BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036960
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 4 LQDIGCLSLLKELN---LCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQIS 59
L DI L L L L N Q LP + L++LK + LVEN+L +LP + +++
Sbjct: 75 LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV-FDKLT 133
Query: 60 PLRTLELRNCNTLQSLPK 77
L L L + N LQSLPK
Sbjct: 134 NLTYLNLAH-NQLQSLPK 150
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 9 CLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNL 49
C S L+EL+L LP+ + LS+LK++ L NK +NL
Sbjct: 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 10 LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
L+ L +L L N Q LP + L+SL +NL N+L +LP + +++ L+ L L N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV-FDKLTQLKELAL-N 108
Query: 69 CNTLQSLP 76
N LQSLP
Sbjct: 109 TNQLQSLP 116
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 4 LQDIGCLSLLKELN---LCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQIS 59
L DI L L L L N Q LP + L++LK + LVEN+L +LP + +++
Sbjct: 75 LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV-FDKLT 133
Query: 60 PLRTLELRNCNTLQSLPK 77
L L L + N LQSLPK
Sbjct: 134 NLTYLYLYH-NQLQSLPK 150
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 10 LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
L+ L L L N Q LP + L++L R++L N+L +LP + +++ L+ L L N
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGV-FDKLTQLKQLSL-N 189
Query: 69 CNTLQSLPK 77
N L+S+P
Sbjct: 190 DNQLKSVPD 198
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 4 LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
LQ G L +L L+L N Q LP +L +L +++ N+L +LP+ +++ + L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQE 128
Query: 64 LELRNCNTLQSLPKLLLPSYPE 85
L L+ N L++LP LL P+
Sbjct: 129 LYLKG-NELKTLPPGLLTPTPK 149
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 4 LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
LQ G L +L L+L N Q LP +L +L +++ N+L +LP+ +++ + L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQE 128
Query: 64 LELRNCNTLQSLPKLLLPSYPE 85
L L+ N L++LP LL P+
Sbjct: 129 LYLKG-NELKTLPPGLLTPTPK 149
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 4 LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
LQ G L +L L+L N Q LP +L +L +++ N+L +LP+ +++ + L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQE 128
Query: 64 LELRNCNTLQSLPKLLLPSYPE 85
L L+ N L++LP LL P+
Sbjct: 129 LYLKG-NELKTLPPGLLTPTPK 149
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 4 LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
LQ G L +L L+L N Q LP +L +L +++ N+L +LP+ +++ + L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQE 128
Query: 64 LELRNCNTLQSLPKLLLPSYPE 85
L L+ N L++LP LL P+
Sbjct: 129 LYLKG-NELKTLPPGLLTPTPK 149
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 4 LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
LQ G L +L L+L N Q LP +L +L +++ N+L +LP+ +++ + L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQE 128
Query: 64 LELRNCNTLQSLPKLLLPSYPE 85
L L+ N L++LP LL P+
Sbjct: 129 LYLKG-NELKTLPPGLLTPTPK 149
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 4 LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
LQ G L +L L+L N Q LP +L +L +++ N+L +LP+ +++ + L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQE 128
Query: 64 LELRNCNTLQSLPKLLLPSYPE 85
L L+ N L++LP LL P+
Sbjct: 129 LYLKG-NELKTLPPGLLTPTPK 149
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 4 LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
LQ G L +L L+L N Q LP +L +L +++ N+L +LP+ +++ + L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQE 128
Query: 64 LELRNCNTLQSLPKLLLPSYPE 85
L L+ N L++LP LL P+
Sbjct: 129 LYLKG-NELKTLPPGLLTPTPK 149
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 4 LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
LQ G L +L L+L N Q LP +L +L +++ N+L +LP+ +++ + L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQE 128
Query: 64 LELRNCNTLQSLPKLLLPSYPE 85
L L+ N L++LP LL P+
Sbjct: 129 LYLKG-NELKTLPPGLLTPTPK 149
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 4 LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
LQ G L +L L+L N Q LP +L +L +++ N+L +LP+ +++ + L+
Sbjct: 71 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQE 129
Query: 64 LELRNCNTLQSLPKLLLPSYPE 85
L L+ N L++LP LL P+
Sbjct: 130 LYLKG-NELKTLPPGLLTPTPK 150
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 4 LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRT 63
LQ G L +L L+L N Q LP +L +L +++ N+L +LP+ +++ + L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQE 128
Query: 64 LELRNCNTLQSLPKLLLPSYPE 85
L L+ N L++LP LL P+
Sbjct: 129 LYLKG-NELKTLPPGLLTPTPK 149
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 10 LSLLKELNLCVNDFQRLPAS-IGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
L L+ L+L N L +S G LSSLK +NL+ N L +T ++ L+TL + N
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
Query: 69 CNTLQSLPKL 78
T + ++
Sbjct: 133 VETFSEIRRI 142
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 10 LSLLKELNLCVNDFQRLPAS-IGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
L L+ L+L N L +S G LSSLK +NL+ N L +T ++ L+TL + N
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 158
Query: 69 CNTLQSLPKL 78
T + ++
Sbjct: 159 VETFSEIRRI 168
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 10 LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68
L+ L L+L N+ Q LP + L+SLK + L N+L +P + +++ L+TL+L N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDN 190
Query: 69 CNTLQSLPK 77
N L+ +P+
Sbjct: 191 -NQLKRVPE 198
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 10 LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
LS L+ + LP + + L+ + L N L LP SI ++ LR L +R C
Sbjct: 103 LSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPA--SIASLNRLRELSIRAC 160
Query: 70 NTLQSLPKLL 79
L LP+ L
Sbjct: 161 PELTELPEPL 170
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 13 LKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLP 50
LKEL +C N LP I L+ L + L +N+L ++P
Sbjct: 114 LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITIS 54
I +I L L L N LPA I +LS+L+ ++L N+L +LP +
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLP 50
E+ +I LS L+ L+L N LPA +GS LK +N + LP
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLP 309
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 7 IGCLSLLKELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNL 49
IG L LKELN+ N Q +LP +L++L+ ++L NK+ ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 7 IGCLSLLKELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNL 49
IG L LKELN+ N Q +LP +L++L+ ++L NK+ ++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 7 IGCLSLLKELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNL 49
IG L LKELN+ N Q +LP +L++L+ ++L NK+ ++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 7 IGCLSLLKELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNL 49
IG L LKELN+ N Q +LP +L++L+ ++L NK+ ++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 7 IGCLSLLKELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNL 49
IG L LKELN+ N Q +LP +L++L+ ++L NK+ ++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 7 IGCLSLLKELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNL 49
IG L LKELN+ N Q +LP +L++L+ ++L NK+ ++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 9 CLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNL 49
C + ++EL+L LP+ I ++SLK++ L N D L
Sbjct: 275 CFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQL 315
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 7 IGCLSLLKELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNL 49
IG L LKELN+ N Q +LP +L++L+ ++L NK+ ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3ETU|A Chain A, Crystal Structure Of Yeast Dsl1p
Length = 365
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 22/114 (19%)
Query: 12 LLKELNLCVNDFQRLPASIGSLSS---LKRMNLVENKL---DNLPITIS-IKQI-SPLRT 63
LLK+ + ND +R S L S L+R ++ N+L DNL ++ IK++ + L
Sbjct: 19 LLKDPLILKNDSKRSNGSELELDSSDLLQREAILANELNILDNLKTFLNLIKEVKTNLNI 78
Query: 64 LELRNCN-TLQSLPKLL-------------LPSYPEKVDTFMLESLSKLFRIIT 103
LEL NC +LQSL K + S VDT LE +S L++I+T
Sbjct: 79 LELENCYYSLQSLRKKMRNNAAYLKQSFNFQQSISTYVDTLHLELVSTLYKILT 132
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 7 IGCLSLLKELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNL 49
IG L LKELN+ N Q +LP +L++L+ ++L NK+ ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 4 LQDIGC--LSLLKELNLCVNDFQRLPA--SIGSLSSLKRMNLVENK---LDNLPIT 52
LQ+I C ++ L+ L+L NDF LP G+L+ L + L K LD LP+
Sbjct: 112 LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 10 LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELR 67
LS L LNL N F +P + L LK ++L N L+ LP ++ Q+S L++L L+
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS-LKSLNLQ 592
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 10 LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELR 67
LS L LNL N F +P + L LK ++L N L+ LP ++ Q+S L++L L+
Sbjct: 540 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS-LKSLNLQ 597
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 10 LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELR 67
LS L LNL N F +P + L LK ++L N L+ LP ++ Q+S L++L L+
Sbjct: 545 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS-LKSLNLQ 602
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 10 LSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLEL 66
L+ LKEL L N Q +PA + L++L+ ++L N+L ++P + ++ L+T+ L
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG-AFDRLGKLQTITL 186
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 10 LSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLEL 66
L+ LKEL L N Q +PA + L++L+ ++L N+L ++P + ++ L+T+ L
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG-AFDRLGKLQTITL 186
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 8 GCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLEL 66
G + + L+L +N +L P SL+ L +NL N+L LP+ + +++ L L L
Sbjct: 37 GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGV-FDKLTKLTHLAL 95
Query: 67 RNCNTLQSLP 76
N L+S+P
Sbjct: 96 H-INQLKSIP 104
>pdb|3ETV|A Chain A, Crystal Structure Of A Tip20p-Dsl1p Fusion Protein
Length = 355
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 44 NKLDNLPITIS-IKQI-SPLRTLELRNCN-TLQSLPKLL-------------LPSYPEKV 87
N LDNL ++ IK++ + L LEL NC +LQSL K + S V
Sbjct: 69 NILDNLKTFLNLIKEVKTNLNILELENCYYSLQSLRKKMRNNAAYLKQSFNFQQSISTYV 128
Query: 88 DTFMLESLSKLFRIIT 103
DT LE +S L++I+T
Sbjct: 129 DTLHLELVSTLYKILT 144
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 9 CLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELR 67
C + L+EL+L + LP+ + L+ LK++ L N D L IS L L +R
Sbjct: 273 CFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQL-CQISAANFPSLTHLYIR 330
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 35 SLKRMNLVENKLDNLPITISIKQISPLRTLELRNC 69
+LK +NL NK+ +L +K++ L++L+L NC
Sbjct: 94 NLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 128
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 10 LSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLDNLPITI 53
L L+ + N +++P I G + LK++NL N+L ++P I
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,314,127
Number of Sequences: 62578
Number of extensions: 141700
Number of successful extensions: 454
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 60
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)