Query 036960
Match_columns 176
No_of_seqs 252 out of 1805
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:08:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617 Ras suppressor protein 99.1 2E-11 4.3E-16 90.9 1.1 109 2-115 47-160 (264)
2 PLN03210 Resistant to P. syrin 99.0 1.1E-09 2.3E-14 102.9 9.7 114 3-121 604-720 (1153)
3 PF13855 LRR_8: Leucine rich r 99.0 2.1E-10 4.5E-15 71.3 3.2 59 11-72 1-61 (61)
4 PLN00113 leucine-rich repeat r 98.9 2.2E-09 4.8E-14 98.9 7.6 86 3-92 156-246 (968)
5 KOG0617 Ras suppressor protein 98.9 7.9E-11 1.7E-15 87.8 -2.7 94 2-100 70-190 (264)
6 KOG0472 Leucine-rich repeat pr 98.9 1.4E-10 3E-15 95.9 -1.6 108 2-114 197-306 (565)
7 PLN03150 hypothetical protein; 98.9 3.4E-09 7.3E-14 93.8 6.6 75 3-80 434-511 (623)
8 PLN03210 Resistant to P. syrin 98.9 8.5E-09 1.8E-13 96.9 9.3 92 2-97 793-908 (1153)
9 PLN00113 leucine-rich repeat r 98.9 5E-09 1.1E-13 96.6 7.1 86 3-92 180-270 (968)
10 KOG0444 Cytoskeletal regulator 98.8 6.5E-10 1.4E-14 96.5 0.7 116 2-122 236-379 (1255)
11 KOG0444 Cytoskeletal regulator 98.8 1.1E-09 2.4E-14 95.1 1.7 87 2-92 94-183 (1255)
12 KOG0618 Serine/threonine phosp 98.7 2.9E-09 6.2E-14 95.4 0.4 111 5-121 377-492 (1081)
13 PF14580 LRR_9: Leucine-rich r 98.7 3.5E-08 7.5E-13 74.1 5.3 104 8-118 16-126 (175)
14 PRK15370 E3 ubiquitin-protein 98.7 7.1E-08 1.5E-12 86.9 8.2 101 3-115 193-293 (754)
15 PF14580 LRR_9: Leucine-rich r 98.7 2.4E-08 5.2E-13 75.0 4.3 84 5-93 35-124 (175)
16 PF12799 LRR_4: Leucine Rich r 98.7 2.6E-08 5.5E-13 57.9 3.4 40 11-50 1-40 (44)
17 KOG0532 Leucine-rich repeat (L 98.6 6.4E-09 1.4E-13 89.2 0.2 113 2-121 112-226 (722)
18 KOG0472 Leucine-rich repeat pr 98.6 1.2E-08 2.6E-13 84.6 1.5 111 3-118 427-541 (565)
19 PLN03150 hypothetical protein; 98.6 1.5E-07 3.3E-12 83.4 7.5 101 12-116 419-526 (623)
20 PRK15370 E3 ubiquitin-protein 98.6 7.7E-08 1.7E-12 86.6 5.6 98 12-115 263-377 (754)
21 KOG4194 Membrane glycoprotein 98.6 9.5E-09 2.1E-13 88.6 -0.4 81 6-90 288-373 (873)
22 PF12799 LRR_4: Leucine Rich r 98.5 9.7E-08 2.1E-12 55.4 2.9 40 34-76 1-40 (44)
23 PF13855 LRR_8: Leucine rich r 98.5 9.8E-08 2.1E-12 59.1 2.9 55 34-92 1-59 (61)
24 KOG0532 Leucine-rich repeat (L 98.5 3.6E-08 7.8E-13 84.7 0.3 106 3-114 136-243 (722)
25 PRK15387 E3 ubiquitin-protein 98.4 5E-07 1.1E-11 81.5 7.4 86 2-98 215-317 (788)
26 KOG4194 Membrane glycoprotein 98.4 9E-08 2E-12 82.7 2.5 74 7-83 145-220 (873)
27 KOG0618 Serine/threonine phosp 98.3 5E-08 1.1E-12 87.6 -1.6 87 3-94 398-488 (1081)
28 COG4886 Leucine-rich repeat (L 98.3 2.6E-07 5.6E-12 77.2 1.8 87 2-92 130-219 (394)
29 PRK15387 E3 ubiquitin-protein 98.3 2.2E-06 4.8E-11 77.5 7.1 73 10-90 241-330 (788)
30 KOG4237 Extracellular matrix p 98.2 3.4E-07 7.3E-12 75.9 1.2 68 12-81 68-137 (498)
31 KOG4658 Apoptotic ATPase [Sign 98.2 4.4E-07 9.5E-12 83.1 2.0 81 7-90 567-650 (889)
32 KOG1259 Nischarin, modulator o 98.1 8.1E-07 1.8E-11 71.7 -0.0 65 8-76 281-345 (490)
33 KOG4579 Leucine-rich repeat (L 98.0 5.9E-07 1.3E-11 64.8 -1.1 70 9-81 51-121 (177)
34 KOG4237 Extracellular matrix p 98.0 1.2E-06 2.6E-11 72.7 0.3 72 7-81 270-343 (498)
35 COG4886 Leucine-rich repeat (L 98.0 2.5E-06 5.4E-11 71.2 1.9 90 7-101 112-204 (394)
36 KOG4658 Apoptotic ATPase [Sign 97.9 8.6E-06 1.9E-10 74.8 4.4 100 10-113 544-650 (889)
37 KOG4579 Leucine-rich repeat (L 97.8 1.7E-06 3.7E-11 62.5 -2.1 76 2-80 67-143 (177)
38 KOG1259 Nischarin, modulator o 97.8 6.6E-06 1.4E-10 66.5 1.0 84 3-92 299-384 (490)
39 cd00116 LRR_RI Leucine-rich re 97.6 2.4E-05 5.1E-10 63.0 1.4 42 6-47 76-121 (319)
40 PRK15386 type III secretion pr 97.6 0.00017 3.7E-09 60.9 5.9 62 9-77 50-112 (426)
41 cd00116 LRR_RI Leucine-rich re 97.6 3.8E-05 8.1E-10 61.8 1.9 58 13-73 110-178 (319)
42 KOG0531 Protein phosphatase 1, 97.5 5E-05 1.1E-09 64.2 2.3 66 7-76 91-156 (414)
43 PRK15386 type III secretion pr 97.4 0.00023 5.1E-09 60.1 4.4 65 30-100 48-112 (426)
44 KOG0531 Protein phosphatase 1, 97.3 9.1E-05 2E-09 62.6 0.9 66 7-77 114-179 (414)
45 KOG1859 Leucine-rich repeat pr 97.2 1.3E-05 2.9E-10 71.2 -4.7 60 13-76 166-225 (1096)
46 KOG1644 U2-associated snRNP A' 97.1 0.0005 1.1E-08 52.7 3.6 64 10-76 41-104 (233)
47 KOG1859 Leucine-rich repeat pr 97.0 5.1E-05 1.1E-09 67.6 -2.8 78 6-90 182-262 (1096)
48 PF00560 LRR_1: Leucine Rich R 97.0 0.00028 6.1E-09 34.5 0.9 19 13-31 2-20 (22)
49 PF00560 LRR_1: Leucine Rich R 96.9 0.0003 6.6E-09 34.4 0.3 20 35-54 1-20 (22)
50 PF13306 LRR_5: Leucine rich r 96.5 0.0039 8.4E-08 43.4 4.1 76 7-89 8-88 (129)
51 KOG1644 U2-associated snRNP A' 96.5 0.0036 7.9E-08 48.0 4.1 68 6-76 59-129 (233)
52 KOG2739 Leucine-rich acidic nu 96.4 0.0025 5.4E-08 50.4 2.7 58 12-73 44-104 (260)
53 PF13504 LRR_7: Leucine rich r 96.2 0.0028 6.2E-08 28.9 1.3 16 12-27 2-17 (17)
54 KOG2739 Leucine-rich acidic nu 96.2 0.0039 8.4E-08 49.3 2.5 62 7-70 61-127 (260)
55 PF13504 LRR_7: Leucine rich r 96.1 0.0034 7.3E-08 28.7 1.3 16 35-50 2-17 (17)
56 KOG3207 Beta-tubulin folding c 95.9 0.0023 5E-08 54.1 0.4 39 9-47 144-185 (505)
57 KOG3665 ZYG-1-like serine/thre 95.8 0.0071 1.5E-07 54.6 2.8 56 10-68 147-204 (699)
58 KOG3207 Beta-tubulin folding c 95.7 0.0051 1.1E-07 52.1 1.6 64 10-76 245-317 (505)
59 KOG2120 SCF ubiquitin ligase, 95.6 0.00082 1.8E-08 54.5 -3.4 108 10-120 209-328 (419)
60 KOG3665 ZYG-1-like serine/thre 95.2 0.014 3E-07 52.8 2.8 57 9-68 171-229 (699)
61 smart00369 LRR_TYP Leucine-ric 95.1 0.016 3.6E-07 29.1 1.8 18 34-51 2-19 (26)
62 smart00370 LRR Leucine-rich re 95.1 0.016 3.6E-07 29.1 1.8 18 34-51 2-19 (26)
63 smart00370 LRR Leucine-rich re 95.1 0.02 4.3E-07 28.8 2.0 22 58-80 1-22 (26)
64 smart00369 LRR_TYP Leucine-ric 95.1 0.02 4.3E-07 28.8 2.0 22 58-80 1-22 (26)
65 KOG2982 Uncharacterized conser 94.8 0.02 4.2E-07 46.7 2.2 62 9-73 95-159 (418)
66 KOG2123 Uncharacterized conser 94.8 0.0019 4.1E-08 52.0 -3.6 60 12-76 20-79 (388)
67 KOG0473 Leucine-rich repeat pr 94.3 0.0011 2.3E-08 52.2 -5.8 82 6-91 37-120 (326)
68 KOG2123 Uncharacterized conser 94.2 0.0029 6.2E-08 51.0 -3.7 63 8-72 38-100 (388)
69 PF13306 LRR_5: Leucine rich r 93.4 0.33 7.2E-06 33.4 6.0 68 7-80 31-100 (129)
70 smart00364 LRR_BAC Leucine-ric 92.0 0.092 2E-06 26.7 1.2 17 35-51 3-19 (26)
71 smart00364 LRR_BAC Leucine-ric 91.8 0.11 2.3E-06 26.4 1.2 18 11-28 2-19 (26)
72 KOG2120 SCF ubiquitin ligase, 91.3 0.0073 1.6E-07 49.2 -5.1 79 12-93 186-271 (419)
73 KOG0473 Leucine-rich repeat pr 90.9 0.0059 1.3E-07 48.1 -5.9 64 6-72 60-123 (326)
74 KOG1909 Ran GTPase-activating 90.5 0.098 2.1E-06 43.3 0.6 37 11-47 185-226 (382)
75 KOG2982 Uncharacterized conser 89.6 0.16 3.4E-06 41.6 1.0 34 12-45 72-108 (418)
76 smart00365 LRR_SD22 Leucine-ri 89.6 0.27 5.8E-06 24.9 1.5 16 34-49 2-17 (26)
77 KOG1909 Ran GTPase-activating 87.1 0.22 4.8E-06 41.3 0.4 81 8-92 154-251 (382)
78 COG5238 RNA1 Ran GTPase-activa 86.5 0.41 8.8E-06 38.8 1.6 81 8-92 27-130 (388)
79 PF13516 LRR_6: Leucine Rich r 83.5 0.64 1.4E-05 22.6 1.0 15 11-25 2-16 (24)
80 KOG3864 Uncharacterized conser 80.1 0.37 8.1E-06 37.1 -0.9 77 12-94 102-188 (221)
81 smart00368 LRR_RI Leucine rich 75.0 2.5 5.3E-05 21.5 1.6 13 12-24 3-15 (28)
82 smart00367 LRR_CC Leucine-rich 74.8 2.3 5.1E-05 21.0 1.5 15 59-73 2-16 (26)
83 KOG3763 mRNA export factor TAP 70.5 2.4 5.3E-05 37.3 1.5 63 9-73 216-283 (585)
84 COG5238 RNA1 Ran GTPase-activa 69.9 8.5 0.00018 31.5 4.3 73 6-79 87-176 (388)
85 KOG3864 Uncharacterized conser 64.4 2.9 6.2E-05 32.4 0.6 88 25-116 92-187 (221)
86 KOG4341 F-box protein containi 60.7 6.4 0.00014 33.7 2.1 62 10-73 319-386 (483)
87 KOG1947 Leucine rich repeat pr 58.2 7.9 0.00017 32.5 2.3 106 10-118 187-308 (482)
88 TIGR00864 PCC polycystin catio 56.3 8.7 0.00019 40.1 2.5 31 17-47 1-32 (2740)
89 KOG1947 Leucine rich repeat pr 52.4 6.2 0.00013 33.2 0.8 14 32-45 241-254 (482)
90 TIGR00864 PCC polycystin catio 51.2 9.2 0.0002 39.9 1.8 31 40-73 1-32 (2740)
91 KOG3763 mRNA export factor TAP 26.0 34 0.00074 30.4 1.1 58 31-93 215-281 (585)
92 KOG4341 F-box protein containi 22.2 41 0.00088 29.1 0.8 62 9-72 344-414 (483)
No 1
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.10 E-value=2e-11 Score=90.93 Aligned_cols=109 Identities=27% Similarity=0.291 Sum_probs=74.1
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCC--CCCchhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTL--QSLPKLL 79 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l--~~lP~~l 79 (176)
.+|+.+..+.+|+.|++++|+|+++|.+++.+++|+.|++.-|++..+|..|+ .++.|+.||+.. |++ ..+|..+
T Consensus 47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg--s~p~levldlty-nnl~e~~lpgnf 123 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG--SFPALEVLDLTY-NNLNENSLPGNF 123 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC--CCchhhhhhccc-cccccccCCcch
Confidence 46777777888888888888888888888888888888888888777888888 788888888877 777 4567554
Q ss_pred hc--CccceeeccCCcCCcccccc-cCCCCccEEEeeCC
Q 036960 80 LP--SYPEKVDTFMLESLSKLFRI-ITTRKLTYFIFTKC 115 (176)
Q Consensus 80 ~~--~L~~~L~l~~~~~L~~l~~~-~~~~~l~~l~~~~c 115 (176)
+. .| +.|++++. ..+.+|.. ....+++.+.+...
T Consensus 124 f~m~tl-ralyl~dn-dfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 124 FYMTTL-RALYLGDN-DFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred hHHHHH-HHHHhcCC-CcccCChhhhhhcceeEEeeccC
Confidence 43 45 55555543 34555332 23445555555443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.03 E-value=1.1e-09 Score=102.95 Aligned_cols=114 Identities=25% Similarity=0.357 Sum_probs=86.8
Q ss_pred cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCC-CcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENK-LDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~-l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
+|..+ ...+|+.|++.+|+++.+|.++..+++|+.|+++++. ++.+|. +. .+++|+.|++++|+.+..+|..+..
T Consensus 604 lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls--~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 604 MPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS--MATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred CCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cc--cCCcccEEEecCCCCccccchhhhc
Confidence 45554 3567888888888888888778888888888888764 667774 66 7888888888888888888876654
Q ss_pred --CccceeeccCCcCCcccccccCCCCccEEEeeCCcCcccc
Q 036960 82 --SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKS 121 (176)
Q Consensus 82 --~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~~l~~~ 121 (176)
+| +.|++.+|..++.+|.......++.+.+++|..+...
T Consensus 680 L~~L-~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 680 LNKL-EDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred cCCC-CEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc
Confidence 77 8888888888888876666677888888888766543
No 3
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=2.1e-10 Score=71.26 Aligned_cols=59 Identities=34% Similarity=0.597 Sum_probs=53.2
Q ss_pred CCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCC
Q 036960 11 SLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTL 72 (176)
Q Consensus 11 ~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l 72 (176)
++|++|++++|+|+.+|. .|..+++|++|++++|.++.+|. .|. ++++|++|++++ |++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~--~l~~L~~L~l~~-N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFS--NLPNLRYLDLSN-NNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTT--TSTTESEEEETS-SSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHc--CCCCCCEEeCcC-CcC
Confidence 478999999999999886 78999999999999999998865 588 999999999999 764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.93 E-value=2.2e-09 Score=98.89 Aligned_cols=86 Identities=31% Similarity=0.421 Sum_probs=52.9
Q ss_pred cCccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCC-CCchhh
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQ-SLPKLL 79 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~-~lP~~l 79 (176)
+|..++.+++|++|++++|.+.+ +|..++.+++|++|++++|.+. .+|..++ ++++|+.|++++ |.+. .+|..+
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~-n~l~~~~p~~l 232 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG--QMKSLKWIYLGY-NNLSGEIPYEI 232 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc--CcCCccEEECcC-CccCCcCChhH
Confidence 45566666666666666666654 6666666666666666666655 5566666 666666666666 5443 455544
Q ss_pred hc--CccceeeccCC
Q 036960 80 LP--SYPEKVDTFML 92 (176)
Q Consensus 80 ~~--~L~~~L~l~~~ 92 (176)
.. +| ++|+++++
T Consensus 233 ~~l~~L-~~L~L~~n 246 (968)
T PLN00113 233 GGLTSL-NHLDLVYN 246 (968)
T ss_pred hcCCCC-CEEECcCc
Confidence 43 55 56665544
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.90 E-value=7.9e-11 Score=87.76 Aligned_cols=94 Identities=31% Similarity=0.450 Sum_probs=58.2
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCc--c-----------------------cCcccccc
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLD--N-----------------------LPITISIK 56 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~--~-----------------------lP~~~~~~ 56 (176)
++|.+++.+++|+.|++.-|.+..+|..||.++-|+.||+.+|++. . +|..++
T Consensus 70 ~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg-- 147 (264)
T KOG0617|consen 70 ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVG-- 147 (264)
T ss_pred hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhh--
Confidence 4677777777777777777777777777777777777777776655 3 444555
Q ss_pred cCCccceeeccccCCCCCCchhhhc--CccceeeccCCcCCccccc
Q 036960 57 QISPLRTLELRNCNTLQSLPKLLLP--SYPEKVDTFMLESLSKLFR 100 (176)
Q Consensus 57 ~l~~L~~L~l~~cn~l~~lP~~l~~--~L~~~L~l~~~~~L~~l~~ 100 (176)
++++|+.|.+.. |.+-++|.+++. .| +.|.+.+. .|..+|.
T Consensus 148 ~lt~lqil~lrd-ndll~lpkeig~lt~l-relhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 148 KLTNLQILSLRD-NDLLSLPKEIGDLTRL-RELHIQGN-RLTVLPP 190 (264)
T ss_pred hhcceeEEeecc-CchhhCcHHHHHHHHH-HHHhcccc-eeeecCh
Confidence 555555555555 555555555543 34 44445442 4444433
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.89 E-value=1.4e-10 Score=95.88 Aligned_cols=108 Identities=27% Similarity=0.381 Sum_probs=84.9
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
++|+++++|.+|..|++..|+|..+| +|+++..|.+++++.|+|+.+|.... ++++++.+||+.. |+++++|+++..
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~-~~L~~l~vLDLRd-Nklke~Pde~cl 273 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHL-KHLNSLLVLDLRD-NKLKEVPDEICL 273 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHh-cccccceeeeccc-cccccCchHHHH
Confidence 58888999999999999999998888 78888888888888888888887643 2888999999999 999999988875
Q ss_pred --CccceeeccCCcCCcccccccCCCCccEEEeeC
Q 036960 82 --SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTK 114 (176)
Q Consensus 82 --~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~ 114 (176)
+| ++||+++. .++.+|...++..++.+.+.+
T Consensus 274 LrsL-~rLDlSNN-~is~Lp~sLgnlhL~~L~leG 306 (565)
T KOG0472|consen 274 LRSL-ERLDLSNN-DISSLPYSLGNLHLKFLALEG 306 (565)
T ss_pred hhhh-hhhcccCC-ccccCCcccccceeeehhhcC
Confidence 78 88898764 577775555444444444443
No 7
>PLN03150 hypothetical protein; Provisional
Probab=98.88 E-value=3.4e-09 Score=93.84 Aligned_cols=75 Identities=35% Similarity=0.583 Sum_probs=54.9
Q ss_pred cCccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCC-CCCchhh
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTL-QSLPKLL 79 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l-~~lP~~l 79 (176)
+|+.++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|+++ .+|+.++ ++++|+.|++++ |.+ ..+|..+
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~--~L~~L~~L~Ls~-N~l~g~iP~~l 510 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG--QLTSLRILNLNG-NSLSGRVPAAL 510 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh--cCCCCCEEECcC-CcccccCChHH
Confidence 56677777777777777777765 7777777777777777777777 6677777 777777777777 666 4677655
Q ss_pred h
Q 036960 80 L 80 (176)
Q Consensus 80 ~ 80 (176)
.
T Consensus 511 ~ 511 (623)
T PLN03150 511 G 511 (623)
T ss_pred h
Confidence 4
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.87 E-value=8.5e-09 Score=96.92 Aligned_cols=92 Identities=28% Similarity=0.425 Sum_probs=52.2
Q ss_pred ccCccccCCCCCcEEeccCC-CCccccccccCCCCCcE---------------------EEeeCCCCcccCcccccccCC
Q 036960 2 EILQDIGCLSLLKELNLCVN-DFQRLPASIGSLSSLKR---------------------MNLVENKLDNLPITISIKQIS 59 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~---------------------L~l~~n~l~~lP~~~~~~~l~ 59 (176)
++|.+++++++|+.|++++| .++.+|..+ .+++|+. |++++|.|+.+|.++. .++
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~--~l~ 869 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIE--KFS 869 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHh--cCC
Confidence 36777777888888888776 566676544 3344444 4444444445555555 555
Q ss_pred ccceeeccccCCCCCCchhhhc--CccceeeccCCcCCcc
Q 036960 60 PLRTLELRNCNTLQSLPKLLLP--SYPEKVDTFMLESLSK 97 (176)
Q Consensus 60 ~L~~L~l~~cn~l~~lP~~l~~--~L~~~L~l~~~~~L~~ 97 (176)
+|+.|++++|++++.+|..+.. +| +.+++.+|.+|..
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~L~~L-~~L~l~~C~~L~~ 908 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISKLKHL-ETVDFSDCGALTE 908 (1153)
T ss_pred CCCEEECCCCCCcCccCcccccccCC-CeeecCCCccccc
Confidence 5555555555555555543332 44 5555555555543
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.86 E-value=5e-09 Score=96.57 Aligned_cols=86 Identities=27% Similarity=0.391 Sum_probs=51.9
Q ss_pred cCccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCC-CCCchhh
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTL-QSLPKLL 79 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l-~~lP~~l 79 (176)
+|..++++++|++|++++|.+++ +|..++.+++|++|++++|.+. .+|..++ ++++|++|++++ |.+ ..+|..+
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~-n~l~~~~p~~l 256 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVY-NNLTGPIPSSL 256 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh--cCCCCCEEECcC-ceeccccChhH
Confidence 56666666677777776666654 5666666666666666666665 5566666 666666666666 444 3455444
Q ss_pred hc--CccceeeccCC
Q 036960 80 LP--SYPEKVDTFML 92 (176)
Q Consensus 80 ~~--~L~~~L~l~~~ 92 (176)
.. +| ++|+++++
T Consensus 257 ~~l~~L-~~L~L~~n 270 (968)
T PLN00113 257 GNLKNL-QYLFLYQN 270 (968)
T ss_pred hCCCCC-CEEECcCC
Confidence 32 45 55555443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.84 E-value=6.5e-10 Score=96.55 Aligned_cols=116 Identities=23% Similarity=0.258 Sum_probs=75.9
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCC--CCCchhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTL--QSLPKLL 79 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l--~~lP~~l 79 (176)
.+|+.+.++.+|+.|+|++|+|+++.-..+.+.+|++|+++.|+++.+|..+. +|++|+.|.+.+ |++ ..||.++
T Consensus 236 ~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avc--KL~kL~kLy~n~-NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVC--KLTKLTKLYANN-NKLTFEGIPSGI 312 (1255)
T ss_pred cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHh--hhHHHHHHHhcc-CcccccCCccch
Confidence 35666777777777777777777776667777777777777777777777776 777777766666 655 4566655
Q ss_pred hc-------------------------CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCccccc
Q 036960 80 LP-------------------------SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKLNKSG 122 (176)
Q Consensus 80 ~~-------------------------~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l~~~~ 122 (176)
+. .| +.|.+ +++.|-++|+.+ ....+..+++...++|.-.+
T Consensus 313 GKL~~Levf~aanN~LElVPEglcRC~kL-~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLELVPEGLCRCVKL-QKLKL-DHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhhHHHHhhccccccCchhhhhhHHH-HHhcc-cccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 43 22 33333 344555665544 34567778888888875433
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.83 E-value=1.1e-09 Score=95.11 Aligned_cols=87 Identities=24% Similarity=0.306 Sum_probs=71.7
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
-||+.|..+..|..|+|++|+++++|..+..-+++-.|+|++|+|..||.. +. +|+-|-.||+++ |++..+|+.+-
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi--nLtDLLfLDLS~-NrLe~LPPQ~R 170 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFI--NLTDLLFLDLSN-NRLEMLPPQIR 170 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHH--hhHhHhhhcccc-chhhhcCHHHH
Confidence 378888899999999999999999998888888889999999999999887 45 888888999999 99999987665
Q ss_pred c--CccceeeccCC
Q 036960 81 P--SYPEKVDTFML 92 (176)
Q Consensus 81 ~--~L~~~L~l~~~ 92 (176)
. .| ++|++++.
T Consensus 171 RL~~L-qtL~Ls~N 183 (1255)
T KOG0444|consen 171 RLSML-QTLKLSNN 183 (1255)
T ss_pred HHhhh-hhhhcCCC
Confidence 4 45 56665543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.71 E-value=2.9e-09 Score=95.40 Aligned_cols=111 Identities=28% Similarity=0.387 Sum_probs=91.0
Q ss_pred ccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--
Q 036960 5 QDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP-- 81 (176)
Q Consensus 5 ~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-- 81 (176)
+-+.++++|+.|+|++|+|..+|. .+.+|..|++|+||||+++++|..+. .+..|++|...+ |.+..+| ++..
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva--~~~~L~tL~ahs-N~l~~fP-e~~~l~ 452 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVA--NLGRLHTLRAHS-NQLLSFP-ELAQLP 452 (1081)
T ss_pred hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHH--hhhhhHHHhhcC-Cceeech-hhhhcC
Confidence 346788999999999999999998 67899999999999999999999898 999999999999 9999999 4443
Q ss_pred CccceeeccCCcCCccc--ccccCCCCccEEEeeCCcCcccc
Q 036960 82 SYPEKVDTFMLESLSKL--FRIITTRKLTYFIFTKCLKLNKS 121 (176)
Q Consensus 82 ~L~~~L~l~~~~~L~~l--~~~~~~~~l~~l~~~~c~~l~~~ 121 (176)
.| +.+|++ |+.|+.+ +......+++.|++++...+.-.
T Consensus 453 qL-~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d 492 (1081)
T KOG0618|consen 453 QL-KVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRLVFD 492 (1081)
T ss_pred cc-eEEecc-cchhhhhhhhhhCCCcccceeeccCCcccccc
Confidence 77 889995 5567654 22222368999999988876443
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=3.5e-08 Score=74.08 Aligned_cols=104 Identities=24% Similarity=0.323 Sum_probs=34.3
Q ss_pred cCCCCCcEEeccCCCCcccccccc-CCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh---cCc
Q 036960 8 GCLSLLKELNLCVNDFQRLPASIG-SLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL---PSY 83 (176)
Q Consensus 8 ~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~---~~L 83 (176)
.+..++++|+|++|.|+.+. .++ .+.+|+.|++++|.|+.++ .+. .+++|+.|++++ |.++.+++.+. ++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~--~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLP--GLPRLKTLDLSN-NRISSISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T------TT--EEE--S-S---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-Ccc--ChhhhhhcccCC-CCCCccccchHHhCCcC
Confidence 34456888999999998874 566 5788999999999999885 577 889999999999 99998875442 478
Q ss_pred cceeeccCCcCCccc---ccccCCCCccEEEeeCCcCc
Q 036960 84 PEKVDTFMLESLSKL---FRIITTRKLTYFIFTKCLKL 118 (176)
Q Consensus 84 ~~~L~l~~~~~L~~l---~~~~~~~~l~~l~~~~c~~l 118 (176)
++|++++. .+..+ .......+++.+++.+++--
T Consensus 91 -~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 -QELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred -CEEECcCC-cCCChHHhHHHHcCCCcceeeccCCccc
Confidence 88888654 34433 22224566777777766543
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.67 E-value=7.1e-08 Score=86.86 Aligned_cols=101 Identities=24% Similarity=0.385 Sum_probs=72.4
Q ss_pred cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcC
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPS 82 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~ 82 (176)
+|..+. ++|+.|++++|+|+.+|..+. .+|++|++++|+++.+|..+. .+|+.|++++ |.+..+|..++.+
T Consensus 193 LP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~----~~L~~L~Ls~-N~L~~LP~~l~s~ 263 (754)
T PRK15370 193 IPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP----DTIQEMELSI-NRITELPERLPSA 263 (754)
T ss_pred CCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh----ccccEEECcC-CccCcCChhHhCC
Confidence 555442 468888888888888887654 478888888888888886544 3678888888 7788888777777
Q ss_pred ccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 83 YPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 83 L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
| +.|++++ .++..+|+... ..++.|++++|
T Consensus 264 L-~~L~Ls~-N~L~~LP~~l~-~sL~~L~Ls~N 293 (754)
T PRK15370 264 L-QSLDLFH-NKISCLPENLP-EELRYLSVYDN 293 (754)
T ss_pred C-CEEECcC-CccCccccccC-CCCcEEECCCC
Confidence 7 8888864 46776654332 35677777665
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=2.4e-08 Score=74.95 Aligned_cols=84 Identities=25% Similarity=0.417 Sum_probs=37.5
Q ss_pred cccc-CCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCccc-ccccCCccceeeccccCCCCCCch--hh-
Q 036960 5 QDIG-CLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITI-SIKQISPLRTLELRNCNTLQSLPK--LL- 79 (176)
Q Consensus 5 ~~l~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~-~~~~l~~L~~L~l~~cn~l~~lP~--~l- 79 (176)
+.++ .+.+|+.|++++|.|+.++ .+..++.|++|++++|+|+.+++.+ . .+++|+.|++++ |++..+-+ .+
T Consensus 35 e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~--~lp~L~~L~L~~-N~I~~l~~l~~L~ 110 (175)
T PF14580_consen 35 ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK--NLPNLQELYLSN-NKISDLNELEPLS 110 (175)
T ss_dssp -S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHH--H-TT--EEE-TT-S---SCCCCGGGG
T ss_pred cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHH--hCCcCCEEECcC-CcCCChHHhHHHH
Confidence 3455 5789999999999999986 7888999999999999999997655 4 689999999999 99987753 11
Q ss_pred -hcCccceeeccCCc
Q 036960 80 -LPSYPEKVDTFMLE 93 (176)
Q Consensus 80 -~~~L~~~L~l~~~~ 93 (176)
.++| +.|++.+++
T Consensus 111 ~l~~L-~~L~L~~NP 124 (175)
T PF14580_consen 111 SLPKL-RVLSLEGNP 124 (175)
T ss_dssp G-TT---EEE-TT-G
T ss_pred cCCCc-ceeeccCCc
Confidence 1256 666666553
No 16
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.66 E-value=2.6e-08 Score=57.90 Aligned_cols=40 Identities=30% Similarity=0.570 Sum_probs=25.3
Q ss_pred CCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccC
Q 036960 11 SLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLP 50 (176)
Q Consensus 11 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 50 (176)
++|++|++++|+|+.+|..++.+++|++|++++|+|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3566677777777776666667777777777777666554
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=6.4e-09 Score=89.24 Aligned_cols=113 Identities=29% Similarity=0.375 Sum_probs=75.8
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
.||..+.++..|.+|+++.|++..+|..+..++ |+.|.+++|+++.+|+.++ .+..|..|+.+. |.+..+|..+..
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig--~~~tl~~ld~s~-nei~slpsql~~ 187 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIG--LLPTLAHLDVSK-NEIQSLPSQLGY 187 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccc--cchhHHHhhhhh-hhhhhchHHhhh
Confidence 477777778888888888888777777777776 7777777777777777777 777777777777 777777766654
Q ss_pred --CccceeeccCCcCCcccccccCCCCccEEEeeCCcCcccc
Q 036960 82 --SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNKS 121 (176)
Q Consensus 82 --~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~~l~~~ 121 (176)
+| +.|.+... .+..+|......++..|+|+ |.++...
T Consensus 188 l~sl-r~l~vrRn-~l~~lp~El~~LpLi~lDfS-cNkis~i 226 (722)
T KOG0532|consen 188 LTSL-RDLNVRRN-HLEDLPEELCSLPLIRLDFS-CNKISYL 226 (722)
T ss_pred HHHH-HHHHHhhh-hhhhCCHHHhCCceeeeecc-cCceeec
Confidence 44 45544432 34455554445555666665 3444333
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.62 E-value=1.2e-08 Score=84.61 Aligned_cols=111 Identities=24% Similarity=0.278 Sum_probs=88.0
Q ss_pred cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchh-hhc
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKL-LLP 81 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~-l~~ 81 (176)
+|-.++.+++|..|+|++|-+.++|.+++.+..|++|+++.|++..+|+.+. .+..++++-.++ |+++++|+. +..
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y--~lq~lEtllas~-nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLY--ELQTLETLLASN-NQIGSVDPSGLKN 503 (565)
T ss_pred chHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHh--hHHHHHHHHhcc-ccccccChHHhhh
Confidence 3556788899999999999999999999999999999999999999998777 777788887788 888888865 332
Q ss_pred --CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCc
Q 036960 82 --SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKL 118 (176)
Q Consensus 82 --~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l 118 (176)
+| ..||+.+. .++.+|... ...+++.+.+++.+.-
T Consensus 504 m~nL-~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNL-TTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhc-ceeccCCC-chhhCChhhccccceeEEEecCCccC
Confidence 77 78888654 677776655 4467888888876544
No 19
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=1.5e-07 Score=83.45 Aligned_cols=101 Identities=23% Similarity=0.334 Sum_probs=79.4
Q ss_pred CCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCC-CCchhhhc--Cccce
Q 036960 12 LLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQ-SLPKLLLP--SYPEK 86 (176)
Q Consensus 12 ~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~-~lP~~l~~--~L~~~ 86 (176)
.++.|+|++|.+++ +|..++.+++|+.|+|++|.+. .+|..++ .+++|+.|++++ |.+. .+|+.+.. +| +.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~--~l~~L~~LdLs~-N~lsg~iP~~l~~L~~L-~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG--SITSLEVLDLSY-NSFNGSIPESLGQLTSL-RI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh--CCCCCCEEECCC-CCCCCCCchHHhcCCCC-CE
Confidence 37789999999987 8999999999999999999998 8999999 999999999999 8885 78877765 88 99
Q ss_pred eeccCCcCCcccccccCC--CCccEEEeeCCc
Q 036960 87 VDTFMLESLSKLFRIITT--RKLTYFIFTKCL 116 (176)
Q Consensus 87 L~l~~~~~L~~l~~~~~~--~~l~~l~~~~c~ 116 (176)
|+++++.--..+|..... ..+..+.+.++.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCc
Confidence 999877533355443322 233455555443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.57 E-value=7.7e-08 Score=86.64 Aligned_cols=98 Identities=24% Similarity=0.368 Sum_probs=51.5
Q ss_pred CCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCccccc-----------------ccCCccceeeccccCCCCC
Q 036960 12 LLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISI-----------------KQISPLRTLELRNCNTLQS 74 (176)
Q Consensus 12 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~-----------------~~l~~L~~L~l~~cn~l~~ 74 (176)
+|+.|++++|+|+.+|..+. .+|+.|++++|+++.+|..+.. .-.++|+.|++++ |.++.
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~-N~Lt~ 339 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGE-NALTS 339 (754)
T ss_pred CCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccC-Ccccc
Confidence 45666666666666555443 3566666666666655542210 0112455555555 55555
Q ss_pred CchhhhcCccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 75 LPKLLLPSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 75 lP~~l~~~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
+|..++++| +.|+++++ .+..+|... ...++.+++++|
T Consensus 340 LP~~l~~sL-~~L~Ls~N-~L~~LP~~l-p~~L~~LdLs~N 377 (754)
T PRK15370 340 LPASLPPEL-QVLDVSKN-QITVLPETL-PPTITTLDVSRN 377 (754)
T ss_pred CChhhcCcc-cEEECCCC-CCCcCChhh-cCCcCEEECCCC
Confidence 555555555 66666554 344443322 245666777665
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.57 E-value=9.5e-09 Score=88.62 Aligned_cols=81 Identities=27% Similarity=0.306 Sum_probs=57.4
Q ss_pred cccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhc--
Q 036960 6 DIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLP-- 81 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-- 81 (176)
++.+|+.|+.|++++|.|.. -++++...++|++|+|++|+|+++++. |. .|..|+.|.|++ |+++.+.++.+.
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~--~L~~Le~LnLs~-Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR--VLSQLEELNLSH-NSIDHLAEGAFVGL 364 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH--HHHHhhhhcccc-cchHHHHhhHHHHh
Confidence 46677777777777777777 355677777788888888888877654 66 677777777777 777777665543
Q ss_pred -Cccceeecc
Q 036960 82 -SYPEKVDTF 90 (176)
Q Consensus 82 -~L~~~L~l~ 90 (176)
+| +.||++
T Consensus 365 ssL-~~LdLr 373 (873)
T KOG4194|consen 365 SSL-HKLDLR 373 (873)
T ss_pred hhh-hhhcCc
Confidence 56 666664
No 22
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.50 E-value=9.7e-08 Score=55.43 Aligned_cols=40 Identities=30% Similarity=0.606 Sum_probs=35.8
Q ss_pred CCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960 34 SSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP 76 (176)
Q Consensus 34 ~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP 76 (176)
++|++|++++|+|+.+|..++ +|++|+.|++++ |.++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~--~l~~L~~L~l~~-N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELS--NLPNLETLNLSN-NPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGT--TCTTSSEEEETS-SCCSBEG
T ss_pred CcceEEEccCCCCcccCchHh--CCCCCCEEEecC-CCCCCCc
Confidence 479999999999999998899 999999999999 9999887
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.49 E-value=9.8e-08 Score=59.05 Aligned_cols=55 Identities=31% Similarity=0.472 Sum_probs=45.8
Q ss_pred CCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc---CccceeeccCC
Q 036960 34 SSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP---SYPEKVDTFML 92 (176)
Q Consensus 34 ~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~---~L~~~L~l~~~ 92 (176)
++|++|++++|+|+.+|. .|. ++++|++|++++ |.++.+|+..+. +| ++|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~--~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L-~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS--NLPNLETLDLSN-NNLTSIPPDAFSNLPNL-RYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT--TGTTESEEEETS-SSESEEETTTTTTSTTE-SEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHc--CCCCCCEeEccC-CccCccCHHHHcCCCCC-CEEeCcCC
Confidence 478999999999999986 578 999999999999 999999976654 55 66666554
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.45 E-value=3.6e-08 Score=84.72 Aligned_cols=106 Identities=26% Similarity=0.416 Sum_probs=85.1
Q ss_pred cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP- 81 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~- 81 (176)
+|..++.++ |+.|-+++|+++.+|..++.+..|..||.+.|.|..+|..++ ++.+|+.|.+.. |.+..+|+++..
T Consensus 136 lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~--~l~slr~l~vrR-n~l~~lp~El~~L 211 (722)
T KOG0532|consen 136 LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLG--YLTSLRDLNVRR-NHLEDLPEELCSL 211 (722)
T ss_pred CChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhh--hHHHHHHHHHhh-hhhhhCCHHHhCC
Confidence 566776665 889999999999999999998999999999999999999999 999999999999 999999988875
Q ss_pred CccceeeccCCcCCccccccc-CCCCccEEEeeC
Q 036960 82 SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTK 114 (176)
Q Consensus 82 ~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~ 114 (176)
.| ..||++ |+++..+|-.+ ....++++-+.+
T Consensus 212 pL-i~lDfS-cNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 212 PL-IRLDFS-CNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred ce-eeeecc-cCceeecchhhhhhhhheeeeecc
Confidence 56 788885 66787775433 233455554443
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.45 E-value=5e-07 Score=81.53 Aligned_cols=86 Identities=26% Similarity=0.346 Sum_probs=53.8
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccC-----------------Ccccee
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQI-----------------SPLRTL 64 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l-----------------~~L~~L 64 (176)
++|+.+. ++|+.|++++|+|+.+|.. .++|++|++++|+|+.+|..+. +| .+|+.|
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~--sL~~L~Ls~N~L~~Lp~lp~~L~~L 287 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPP--GLLELSIFSNPLTHLPALPSGLCKL 287 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCccc--ccceeeccCCchhhhhhchhhcCEE
Confidence 3676664 3688888888888888753 4678888888888887774322 11 234455
Q ss_pred eccccCCCCCCchhhhcCccceeeccCCcCCccc
Q 036960 65 ELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKL 98 (176)
Q Consensus 65 ~l~~cn~l~~lP~~l~~~L~~~L~l~~~~~L~~l 98 (176)
++++ |.++.+|. ..++| +.|+++++ .+..+
T Consensus 288 ~Ls~-N~Lt~LP~-~p~~L-~~LdLS~N-~L~~L 317 (788)
T PRK15387 288 WIFG-NQLTSLPV-LPPGL-QELSVSDN-QLASL 317 (788)
T ss_pred ECcC-Cccccccc-ccccc-ceeECCCC-ccccC
Confidence 5666 56666653 33456 66666654 45444
No 26
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.45 E-value=9e-08 Score=82.74 Aligned_cols=74 Identities=26% Similarity=0.463 Sum_probs=54.2
Q ss_pred ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhcCc
Q 036960 7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLPSY 83 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L 83 (176)
+.-++.|+.|||+.|.|+++|. +|..-.++++|+|++|+|+.+-.. |. .+.+|.+|.|+. |.++.+|...+++|
T Consensus 145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~--~lnsL~tlkLsr-NrittLp~r~Fk~L 220 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD--SLNSLLTLKLSR-NRITTLPQRSFKRL 220 (873)
T ss_pred HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccc--ccchheeeeccc-CcccccCHHHhhhc
Confidence 4456667777777777777665 566667788888888888877543 77 788888888888 88888887666534
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.34 E-value=5e-08 Score=87.62 Aligned_cols=87 Identities=29% Similarity=0.446 Sum_probs=77.2
Q ss_pred cCcc-ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCC--CCchhh
Q 036960 3 ILQD-IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQ--SLPKLL 79 (176)
Q Consensus 3 lP~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~--~lP~~l 79 (176)
+|.+ +.++..|+.|+|++|+++.+|..+..+..|++|...+|++..+| .+. .++.|+.+|++. |.++ .+|...
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~--~l~qL~~lDlS~-N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELA--QLPQLKVLDLSC-NNLSEVTLPEAL 473 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhh--hcCcceEEeccc-chhhhhhhhhhC
Confidence 5655 57889999999999999999999999999999999999999999 678 899999999999 9995 466666
Q ss_pred h-cCccceeeccCCcC
Q 036960 80 L-PSYPEKVDTFMLES 94 (176)
Q Consensus 80 ~-~~L~~~L~l~~~~~ 94 (176)
+ ++| ++||+++.+.
T Consensus 474 p~p~L-kyLdlSGN~~ 488 (1081)
T KOG0618|consen 474 PSPNL-KYLDLSGNTR 488 (1081)
T ss_pred CCccc-ceeeccCCcc
Confidence 6 689 9999988764
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.30 E-value=2.6e-07 Score=77.19 Aligned_cols=87 Identities=37% Similarity=0.537 Sum_probs=66.0
Q ss_pred ccCccccCCC-CCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchh--
Q 036960 2 EILQDIGCLS-LLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKL-- 78 (176)
Q Consensus 2 ~lP~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~-- 78 (176)
+||+....++ +|+.|++++|++..+|..++.++.|+.|++++|++..+|...+ .+++|+.|++++ |+++.+|..
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~~~L~~L~ls~-N~i~~l~~~~~ 206 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS--NLSNLNNLDLSG-NKISDLPPEIE 206 (394)
T ss_pred cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh--hhhhhhheeccC-CccccCchhhh
Confidence 4666666664 8888888888888887778888888888888888888887776 678888888888 888888865
Q ss_pred hhcCccceeeccCC
Q 036960 79 LLPSYPEKVDTFML 92 (176)
Q Consensus 79 l~~~L~~~L~l~~~ 92 (176)
....| +.+.+.+.
T Consensus 207 ~~~~L-~~l~~~~N 219 (394)
T COG4886 207 LLSAL-EELDLSNN 219 (394)
T ss_pred hhhhh-hhhhhcCC
Confidence 33346 66666544
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.27 E-value=2.2e-06 Score=77.45 Aligned_cols=73 Identities=29% Similarity=0.404 Sum_probs=39.2
Q ss_pred CCCCcEEeccCCCCccccccccCC-----------------CCCcEEEeeCCCCcccCcccccccCCccceeeccccCCC
Q 036960 10 LSLLKELNLCVNDFQRLPASIGSL-----------------SSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTL 72 (176)
Q Consensus 10 l~~L~~L~L~~n~l~~lp~~~~~l-----------------~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l 72 (176)
+++|++|++++|+|+.+|..+..+ .+|+.|++++|+++.+|. .+++|+.|++++ |.+
T Consensus 241 p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~-N~L 314 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSD-NQL 314 (788)
T ss_pred CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc-----cccccceeECCC-Ccc
Confidence 467788888888887776432111 123334444444444442 224677777777 777
Q ss_pred CCCchhhhcCccceeecc
Q 036960 73 QSLPKLLLPSYPEKVDTF 90 (176)
Q Consensus 73 ~~lP~~l~~~L~~~L~l~ 90 (176)
+.+|. ++.+| ..|++.
T Consensus 315 ~~Lp~-lp~~L-~~L~Ls 330 (788)
T PRK15387 315 ASLPA-LPSEL-CKLWAY 330 (788)
T ss_pred ccCCC-Ccccc-cccccc
Confidence 66663 33334 444443
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.24 E-value=3.4e-07 Score=75.90 Aligned_cols=68 Identities=25% Similarity=0.407 Sum_probs=55.1
Q ss_pred CCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhhc
Q 036960 12 LLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 12 ~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
.-..++|..|+|+.+|+ .|+.+.+|+.|||++|+|+.| |..|. ++.+|..|-+.+-|+|+.+|.+.+.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~--GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK--GLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh--hhHhhhHHHhhcCCchhhhhhhHhh
Confidence 45678888999999887 788899999999999999977 66688 8888877666544888999987665
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.24 E-value=4.4e-07 Score=83.11 Aligned_cols=81 Identities=31% Similarity=0.510 Sum_probs=66.1
Q ss_pred ccCCCCCcEEeccCC-CCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960 7 IGCLSLLKELNLCVN-DFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY 83 (176)
Q Consensus 7 l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L 83 (176)
|..++.|++|||++| .+..+|++++.+-+|++|++++..+..+|.+++ +|.+|.+|++.....+..+|..... +|
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~--~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLG--NLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHH--HHHhhheeccccccccccccchhhhcccc
Confidence 667999999999988 788899999999999999999999999999999 9999999999884556666533331 56
Q ss_pred cceeecc
Q 036960 84 PEKVDTF 90 (176)
Q Consensus 84 ~~~L~l~ 90 (176)
++|.+.
T Consensus 645 -r~L~l~ 650 (889)
T KOG4658|consen 645 -RVLRLP 650 (889)
T ss_pred -cEEEee
Confidence 666653
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.06 E-value=8.1e-07 Score=71.71 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=56.6
Q ss_pred cCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960 8 GCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP 76 (176)
Q Consensus 8 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP 76 (176)
.....|+++||++|.|+.+-+++.-.+.++.|++++|.|..+.. +. .+++|+.||+++ |.+.++-
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La--~L~~L~~LDLS~-N~Ls~~~ 345 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LA--ELPQLQLLDLSG-NLLAECV 345 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hh--hcccceEeeccc-chhHhhh
Confidence 34567889999999999999999999999999999999998864 77 899999999999 9887765
No 33
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=5.9e-07 Score=64.80 Aligned_cols=70 Identities=26% Similarity=0.495 Sum_probs=50.4
Q ss_pred CCCCCcEEeccCCCCccccccccCC-CCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960 9 CLSLLKELNLCVNDFQRLPASIGSL-SSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l~~lp~~~~~l-~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
....|+..+|++|.++.+|+.|... +.++++++++|.|..+|+.+. .++.|+.|+++. |.+...|.-+.+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~A--am~aLr~lNl~~-N~l~~~p~vi~~ 121 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELA--AMPALRSLNLRF-NPLNAEPRVIAP 121 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHh--hhHHhhhccccc-CccccchHHHHH
Confidence 3445666677788777777766544 367777888888888887777 777888888887 777777765554
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.02 E-value=1.2e-06 Score=72.69 Aligned_cols=72 Identities=25% Similarity=0.366 Sum_probs=63.3
Q ss_pred ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhc
Q 036960 7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
|..+++|+.|+|++|+|+.+-+ +|..+.++++|.|..|+|..+-+. |. ++..|++|++++ |+++.+-.+.+.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~--~ls~L~tL~L~~-N~it~~~~~aF~ 343 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ--GLSGLKTLSLYD-NQITTVAPGAFQ 343 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhh--ccccceeeeecC-CeeEEEeccccc
Confidence 7789999999999999999754 899999999999999999988654 78 999999999999 999887666664
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.00 E-value=2.5e-06 Score=71.24 Aligned_cols=90 Identities=33% Similarity=0.497 Sum_probs=76.7
Q ss_pred ccCCCCCcEEeccCCCCccccccccCCC-CCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhh--hcCc
Q 036960 7 IGCLSLLKELNLCVNDFQRLPASIGSLS-SLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLL--LPSY 83 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l--~~~L 83 (176)
+..++.+..|++.+|.++.+|...+.+. +|+.|++++|.+..+|..+. .+++|+.|++++ |.+..+|... ...|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~--~l~~L~~L~l~~-N~l~~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLR--NLPNLKNLDLSF-NDLSDLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhh--ccccccccccCC-chhhhhhhhhhhhhhh
Confidence 4456779999999999999999888885 99999999999999988889 999999999999 9999999764 3477
Q ss_pred cceeeccCCcCCcccccc
Q 036960 84 PEKVDTFMLESLSKLFRI 101 (176)
Q Consensus 84 ~~~L~l~~~~~L~~l~~~ 101 (176)
+.|++++. .+..++..
T Consensus 189 -~~L~ls~N-~i~~l~~~ 204 (394)
T COG4886 189 -NNLDLSGN-KISDLPPE 204 (394)
T ss_pred -hheeccCC-ccccCchh
Confidence 88888765 56666554
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.95 E-value=8.6e-06 Score=74.80 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=81.0
Q ss_pred CCCCcEEeccCCC--Ccccccc-ccCCCCCcEEEeeCCC-CcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960 10 LSLLKELNLCVND--FQRLPAS-IGSLSSLKRMNLVENK-LDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY 83 (176)
Q Consensus 10 l~~L~~L~L~~n~--l~~lp~~-~~~l~~L~~L~l~~n~-l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L 83 (176)
.+.|++|-+..|. +..++.. |..++.|+.||+++|. +.++|+.++ +|-+|++|++++ ..+..+|.++.. .|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~--~Li~LryL~L~~-t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG--ELVHLRYLDLSD-TGISHLPSGLGNLKKL 620 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh--hhhhhhcccccC-CCccccchHHHHHHhh
Confidence 3468888888885 6666654 7889999999999886 889999999 999999999999 999999998886 78
Q ss_pred cceeeccCCcCCcccccccC-CCCccEEEee
Q 036960 84 PEKVDTFMLESLSKLFRIIT-TRKLTYFIFT 113 (176)
Q Consensus 84 ~~~L~l~~~~~L~~l~~~~~-~~~l~~l~~~ 113 (176)
.+|++.....+..++.... ..+++++.+.
T Consensus 621 -~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 621 -IYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred -heeccccccccccccchhhhcccccEEEee
Confidence 8999987777766644443 5667766554
No 37
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.81 E-value=1.7e-06 Score=62.46 Aligned_cols=76 Identities=21% Similarity=0.338 Sum_probs=67.9
Q ss_pred ccCccccC-CCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh
Q 036960 2 EILQDIGC-LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 2 ~lP~~l~~-l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
++|+.|.. ++.++.|++++|+|.++|.++..++.|+.|+++.|.+...|+.+. .|.+|-.|+..+ |...++|-.+.
T Consensus 67 ~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~--~L~~l~~Lds~~-na~~eid~dl~ 143 (177)
T KOG4579|consen 67 KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA--PLIKLDMLDSPE-NARAEIDVDLF 143 (177)
T ss_pred hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHH--HHHhHHHhcCCC-CccccCcHHHh
Confidence 45666654 568999999999999999999999999999999999999999998 899999999999 99999996554
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.80 E-value=6.6e-06 Score=66.53 Aligned_cols=84 Identities=21% Similarity=0.233 Sum_probs=64.2
Q ss_pred cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP- 81 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~- 81 (176)
|-++..-++.++.|++++|.|..+.. +..+.+|+.||+++|.++.+-.+-. ++-+.+.|.+++ |.++.+. ++..
T Consensus 299 iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~--KLGNIKtL~La~-N~iE~LS-GL~KL 373 (490)
T KOG1259|consen 299 IDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHL--KLGNIKTLKLAQ-NKIETLS-GLRKL 373 (490)
T ss_pred hhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHh--hhcCEeeeehhh-hhHhhhh-hhHhh
Confidence 34455567889999999999998864 8899999999999999887755545 667778888888 8887776 5554
Q ss_pred -CccceeeccCC
Q 036960 82 -SYPEKVDTFML 92 (176)
Q Consensus 82 -~L~~~L~l~~~ 92 (176)
+| ..||+++.
T Consensus 374 YSL-vnLDl~~N 384 (490)
T KOG1259|consen 374 YSL-VNLDLSSN 384 (490)
T ss_pred hhh-eecccccc
Confidence 66 66666543
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.61 E-value=2.4e-05 Score=63.00 Aligned_cols=42 Identities=26% Similarity=0.218 Sum_probs=20.0
Q ss_pred cccCCCCCcEEeccCCCCcc-ccccccCCCC---CcEEEeeCCCCc
Q 036960 6 DIGCLSLLKELNLCVNDFQR-LPASIGSLSS---LKRMNLVENKLD 47 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~---L~~L~l~~n~l~ 47 (176)
.+..+++|+.|++++|.+.. .+..+..+.+ |++|++++|.+.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 34445555566665555543 2223333322 555555555544
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.56 E-value=0.00017 Score=60.92 Aligned_cols=62 Identities=23% Similarity=0.353 Sum_probs=43.6
Q ss_pred CCCCCcEEeccCCCCccccccccCCCCCcEEEeeCC-CCcccCcccccccCCccceeeccccCCCCCCch
Q 036960 9 CLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVEN-KLDNLPITISIKQISPLRTLELRNCNTLQSLPK 77 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n-~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~ 77 (176)
.+.+++.|++++|.|+.+|. -..+|+.|.++++ .++.+|..+. ++|+.|++++|..+..+|.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP----~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP----EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh----hhhhheEccCccccccccc
Confidence 45778888888888888872 2346888888774 4667775433 4677888888667776664
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.55 E-value=3.8e-05 Score=61.81 Aligned_cols=58 Identities=29% Similarity=0.448 Sum_probs=31.1
Q ss_pred CcEEeccCCCCcc-----ccccccCC-CCCcEEEeeCCCCc-----ccCcccccccCCccceeeccccCCCC
Q 036960 13 LKELNLCVNDFQR-----LPASIGSL-SSLKRMNLVENKLD-----NLPITISIKQISPLRTLELRNCNTLQ 73 (176)
Q Consensus 13 L~~L~L~~n~l~~-----lp~~~~~l-~~L~~L~l~~n~l~-----~lP~~~~~~~l~~L~~L~l~~cn~l~ 73 (176)
|++|++++|.++. +...+..+ ++|+.|++++|.++ .++..+. .+++|+.|++++ |.++
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~--~~~~L~~L~l~~-n~l~ 178 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR--ANRDLKELNLAN-NGIG 178 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH--hCCCcCEEECcC-CCCc
Confidence 6666666666552 22334444 56666666666655 2233344 455566666666 5544
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.52 E-value=5e-05 Score=64.22 Aligned_cols=66 Identities=26% Similarity=0.434 Sum_probs=49.6
Q ss_pred ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960 7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP 76 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP 76 (176)
+..+.+|+.|++.+|+|+.+...+..+.+|++|++++|.|+.+. .+. .++.|+.|++++ |.+..++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~--~l~~L~~L~l~~-N~i~~~~ 156 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLS--TLTLLKELNLSG-NLISDIS 156 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chh--hccchhhheecc-Ccchhcc
Confidence 56677788888888888887655777888888888888888773 355 666777888888 7777766
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.36 E-value=0.00023 Score=60.06 Aligned_cols=65 Identities=23% Similarity=0.404 Sum_probs=55.2
Q ss_pred ccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccceeeccCCcCCccccc
Q 036960 30 IGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFMLESLSKLFR 100 (176)
Q Consensus 30 ~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~~L~l~~~~~L~~l~~ 100 (176)
+..+.++..|++++|.++.+|. -..+|+.|.+++|+.++.+|..++.+| ++|++.+|..+..+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~LP~nL-e~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-----LPNELTEITIENCNNLTTLPGSIPEGL-EKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-----CCCCCcEEEccCCCCcccCCchhhhhh-hheEccCccccccccc
Confidence 4457899999999999999983 235799999999999999998888899 9999999977776644
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.26 E-value=9.1e-05 Score=62.65 Aligned_cols=66 Identities=24% Similarity=0.468 Sum_probs=58.0
Q ss_pred ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCch
Q 036960 7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPK 77 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~ 77 (176)
+..+++|++|++++|.|+.+. .+..+..|+.|++++|.|+.+. .+. .++.|+.+++++ |.+..+..
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~--~l~~L~~l~l~~-n~i~~ie~ 179 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLE--SLKSLKLLDLSY-NRIVDIEN 179 (414)
T ss_pred hhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCc--cchhhhcccCCc-chhhhhhh
Confidence 567899999999999999985 6888888999999999999885 466 688999999999 99988875
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.21 E-value=1.3e-05 Score=71.19 Aligned_cols=60 Identities=25% Similarity=0.457 Sum_probs=30.4
Q ss_pred CcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960 13 LKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP 76 (176)
Q Consensus 13 L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP 76 (176)
|.+.+.++|.++.+-+++.-++.|+.|+|++|+++.+. .+. .+++|++||++. |.++.+|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr--~l~~LkhLDlsy-N~L~~vp 225 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLR--RLPKLKHLDLSY-NCLRHVP 225 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHH--hccccccccccc-chhcccc
Confidence 33444445555554445555555555555555555443 344 455555555555 5555555
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.13 E-value=0.0005 Score=52.65 Aligned_cols=64 Identities=27% Similarity=0.447 Sum_probs=52.1
Q ss_pred CCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960 10 LSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP 76 (176)
Q Consensus 10 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP 76 (176)
+.+...++|++|.+..++ .+..++.|.+|.+.+|+|+.+-+.+. ..+++|+.|.+.+ |+++++-
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~-~~~p~l~~L~Ltn-Nsi~~l~ 104 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLD-TFLPNLKTLILTN-NSIQELG 104 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchh-hhccccceEEecC-cchhhhh
Confidence 346678899999888875 68889999999999999998866554 1567899999999 9998775
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.04 E-value=5.1e-05 Score=67.60 Aligned_cols=78 Identities=31% Similarity=0.409 Sum_probs=55.8
Q ss_pred cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhc--C
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLP--S 82 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~ 82 (176)
++.-++.|+.|+|++|+++.+- .+..+++|+.|||+.|.+..+|.. .. ++ +|+.|.+++ |.++.+- ++.+ +
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~--gc-~L~~L~lrn-N~l~tL~-gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMV--GC-KLQLLNLRN-NALTTLR-GIENLKS 255 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchh--hh-hheeeeecc-cHHHhhh-hHHhhhh
Confidence 3445677888888888888875 778888888888888888888763 22 33 377788888 7777766 4443 5
Q ss_pred ccceeecc
Q 036960 83 YPEKVDTF 90 (176)
Q Consensus 83 L~~~L~l~ 90 (176)
| +.||++
T Consensus 256 L-~~LDls 262 (1096)
T KOG1859|consen 256 L-YGLDLS 262 (1096)
T ss_pred h-hccchh
Confidence 6 666654
No 48
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.00 E-value=0.00028 Score=34.49 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=9.6
Q ss_pred CcEEeccCCCCcccccccc
Q 036960 13 LKELNLCVNDFQRLPASIG 31 (176)
Q Consensus 13 L~~L~L~~n~l~~lp~~~~ 31 (176)
|++|++++|+|+.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 49
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.86 E-value=0.0003 Score=34.38 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=14.1
Q ss_pred CCcEEEeeCCCCcccCcccc
Q 036960 35 SLKRMNLVENKLDNLPITIS 54 (176)
Q Consensus 35 ~L~~L~l~~n~l~~lP~~~~ 54 (176)
+|++|++++|+|+.+|++|+
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 46777777777777776655
No 50
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.53 E-value=0.0039 Score=43.42 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=43.0
Q ss_pred ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhc---
Q 036960 7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLP--- 81 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--- 81 (176)
|.+.++|+.+.+.. .++.++. .|.+.++|+.+.+.++ +..++.. |. ++++++.+.+.+ .+..++...+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~--~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFS--NCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTT--T-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeee--cccccccccccc--cccccccccccccc
Confidence 56677888888875 5777766 6778888999998775 7777664 66 777888888854 44555544432
Q ss_pred Cccceeec
Q 036960 82 SYPEKVDT 89 (176)
Q Consensus 82 ~L~~~L~l 89 (176)
.+ +.+++
T Consensus 82 ~l-~~i~~ 88 (129)
T PF13306_consen 82 NL-KNIDI 88 (129)
T ss_dssp TE-CEEEE
T ss_pred cc-ccccc
Confidence 45 55555
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.53 E-value=0.0036 Score=48.04 Aligned_cols=68 Identities=24% Similarity=0.321 Sum_probs=56.5
Q ss_pred cccCCCCCcEEeccCCCCccccccccC-CCCCcEEEeeCCCCcccCcc--cccccCCccceeeccccCCCCCCc
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPASIGS-LSSLKRMNLVENKLDNLPIT--ISIKQISPLRTLELRNCNTLQSLP 76 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~-l~~L~~L~l~~n~l~~lP~~--~~~~~l~~L~~L~l~~cn~l~~lP 76 (176)
.|..++.|.+|.+.+|.|+.+-+.+.. +++|..|.+.+|.|.++.+- +. .+++|++|.+-+ |.++.-+
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa--~~p~L~~Ltll~-Npv~~k~ 129 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA--SCPKLEYLTLLG-NPVEHKK 129 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc--cCCccceeeecC-Cchhccc
Confidence 466788999999999999998776655 56799999999999988553 45 789999999999 8887655
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.0025 Score=50.36 Aligned_cols=58 Identities=22% Similarity=0.398 Sum_probs=25.4
Q ss_pred CCcEEeccCCCCccccccccCCCCCcEEEeeCC--CCc-ccCcccccccCCccceeeccccCCCC
Q 036960 12 LLKELNLCVNDFQRLPASIGSLSSLKRMNLVEN--KLD-NLPITISIKQISPLRTLELRNCNTLQ 73 (176)
Q Consensus 12 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n--~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~ 73 (176)
.|+.+.+.+..++.+- .+..|++|++|.++.| ++. .++-... .+++|+++++++ |+++
T Consensus 44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e--~~P~l~~l~ls~-Nki~ 104 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAE--KAPNLKVLNLSG-NKIK 104 (260)
T ss_pred chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhh--hCCceeEEeecC-Cccc
Confidence 3444444444443331 3344455555555555 222 3332233 345555555555 5543
No 53
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.24 E-value=0.0028 Score=28.91 Aligned_cols=16 Identities=38% Similarity=0.596 Sum_probs=5.9
Q ss_pred CCcEEeccCCCCcccc
Q 036960 12 LLKELNLCVNDFQRLP 27 (176)
Q Consensus 12 ~L~~L~L~~n~l~~lp 27 (176)
+|+.|++++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3455555555544443
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.0039 Score=49.30 Aligned_cols=62 Identities=31% Similarity=0.450 Sum_probs=47.5
Q ss_pred ccCCCCCcEEeccCC--CCcc-ccccccCCCCCcEEEeeCCCCcccC--cccccccCCccceeeccccC
Q 036960 7 IGCLSLLKELNLCVN--DFQR-LPASIGSLSSLKRMNLVENKLDNLP--ITISIKQISPLRTLELRNCN 70 (176)
Q Consensus 7 l~~l~~L~~L~L~~n--~l~~-lp~~~~~l~~L~~L~l~~n~l~~lP--~~~~~~~l~~L~~L~l~~cn 70 (176)
+-.|++|++|.++.| .+.. ++.-...+++|+++++++|+|+-+- .... .+.+|..|++.+|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~--~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK--ELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh--hhcchhhhhcccCC
Confidence 446789999999999 5555 6655666699999999999987431 1245 67889999999943
No 55
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.12 E-value=0.0034 Score=28.67 Aligned_cols=16 Identities=38% Similarity=0.818 Sum_probs=6.9
Q ss_pred CCcEEEeeCCCCcccC
Q 036960 35 SLKRMNLVENKLDNLP 50 (176)
Q Consensus 35 ~L~~L~l~~n~l~~lP 50 (176)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666655554
No 56
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0023 Score=54.14 Aligned_cols=39 Identities=31% Similarity=0.453 Sum_probs=17.9
Q ss_pred CCCCCcEEeccCCCCcc---ccccccCCCCCcEEEeeCCCCc
Q 036960 9 CLSLLKELNLCVNDFQR---LPASIGSLSSLKRMNLVENKLD 47 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~l~~n~l~ 47 (176)
.+++++.|+|+.|-+.. +-.-+..+++|+.|+++.|++.
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 44555555555554443 1112344445555555554433
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.77 E-value=0.0071 Score=54.64 Aligned_cols=56 Identities=25% Similarity=0.463 Sum_probs=30.1
Q ss_pred CCCCcEEeccCCCCcc--ccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccc
Q 036960 10 LSLLKELNLCVNDFQR--LPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN 68 (176)
Q Consensus 10 l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~ 68 (176)
+|+|+.|.+++-.+.. .-.-..++++|..||+|+.+++.+ .+++ .|++|+.|.+.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS--~LknLq~L~mrn 204 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGIS--RLKNLQVLSMRN 204 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHh--ccccHHHHhccC
Confidence 5566666655544322 223344555666666666666655 3455 555555555554
No 58
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.0051 Score=52.09 Aligned_cols=64 Identities=23% Similarity=0.444 Sum_probs=43.4
Q ss_pred CCCCcEEeccCCCCcccc--ccccCCCCCcEEEeeCCCCccc--Ccc-----cccccCCccceeeccccCCCCCCc
Q 036960 10 LSLLKELNLCVNDFQRLP--ASIGSLSSLKRMNLVENKLDNL--PIT-----ISIKQISPLRTLELRNCNTLQSLP 76 (176)
Q Consensus 10 l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~l~~n~l~~l--P~~-----~~~~~l~~L~~L~l~~cn~l~~lP 76 (176)
+..|+.|+|++|++-..+ .-.+.++.|+.|+++.+.|..+ |+. .. ..++|++|+++. |++..++
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~--~f~kL~~L~i~~-N~I~~w~ 317 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH--TFPKLEYLNISE-NNIRDWR 317 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhc--ccccceeeeccc-Ccccccc
Confidence 456777777777776655 3567777777777777777743 443 23 466778888887 7776666
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.00082 Score=54.52 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=53.3
Q ss_pred CCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCC-CcccC--cccccccCCccceeeccccCCCCCC----chhhhc
Q 036960 10 LSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENK-LDNLP--ITISIKQISPLRTLELRNCNTLQSL----PKLLLP 81 (176)
Q Consensus 10 l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~-l~~lP--~~~~~~~l~~L~~L~l~~cn~l~~l----P~~l~~ 81 (176)
+.+|+.|.+.++++.. +-..+..-..|+.|+++.+. ++... --+. +++.|+.|+++.|-..+.. -..+++
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~--scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS--SCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH--hhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 3445555555555544 33345555555666665543 44221 1234 5566666666654333221 112233
Q ss_pred CccceeeccCCcCCccccc----ccCCCCccEEEeeCCcCccc
Q 036960 82 SYPEKVDTFMLESLSKLFR----IITTRKLTYFIFTKCLKLNK 120 (176)
Q Consensus 82 ~L~~~L~l~~~~~L~~l~~----~~~~~~l~~l~~~~c~~l~~ 120 (176)
+| ..|+++++.+--...+ ...-.++..+++++|..++.
T Consensus 287 ~l-~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 287 TL-TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred hh-hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 55 5666665532111100 11345677888888888876
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.23 E-value=0.014 Score=52.77 Aligned_cols=57 Identities=16% Similarity=0.359 Sum_probs=25.7
Q ss_pred CCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCc--ccccccCCccceeeccc
Q 036960 9 CLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPI--TISIKQISPLRTLELRN 68 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~--~~~~~~l~~L~~L~l~~ 68 (176)
++++|..||+|+.+++.+ .+++.|++|+.|.+.+=.+..-.. .+. +|++|+.||+|.
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF--~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF--NLKKLRVLDISR 229 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh--cccCCCeeeccc
Confidence 344455555555555444 344455555555444433332221 233 444555555544
No 61
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.13 E-value=0.016 Score=29.07 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=9.2
Q ss_pred CCCcEEEeeCCCCcccCc
Q 036960 34 SSLKRMNLVENKLDNLPI 51 (176)
Q Consensus 34 ~~L~~L~l~~n~l~~lP~ 51 (176)
++|++|++++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555544
No 62
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.13 E-value=0.016 Score=29.07 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=9.2
Q ss_pred CCCcEEEeeCCCCcccCc
Q 036960 34 SSLKRMNLVENKLDNLPI 51 (176)
Q Consensus 34 ~~L~~L~l~~n~l~~lP~ 51 (176)
++|++|++++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555544
No 63
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.07 E-value=0.02 Score=28.78 Aligned_cols=22 Identities=45% Similarity=0.649 Sum_probs=19.3
Q ss_pred CCccceeeccccCCCCCCchhhh
Q 036960 58 ISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 58 l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
+++|+.|++++ |.++.+|.+++
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSN-NQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHHHc
Confidence 46899999999 99999998765
No 64
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.07 E-value=0.02 Score=28.78 Aligned_cols=22 Identities=45% Similarity=0.649 Sum_probs=19.3
Q ss_pred CCccceeeccccCCCCCCchhhh
Q 036960 58 ISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 58 l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
+++|+.|++++ |.++.+|.+++
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSN-NQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHHHc
Confidence 46899999999 99999998765
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.02 Score=46.73 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=30.0
Q ss_pred CCCCCcEEeccCCCCccccccc-cCCCCCcEEEeeCCCCc--ccCcccccccCCccceeeccccCCCC
Q 036960 9 CLSLLKELNLCVNDFQRLPASI-GSLSSLKRMNLVENKLD--NLPITISIKQISPLRTLELRNCNTLQ 73 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~l~~n~l~--~lP~~~~~~~l~~L~~L~l~~cn~l~ 73 (176)
+|+.|++|+++.|.+...-... ..+.+|+.|-|.|..+. ..-.... .+|.++.|+++. |+++
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~--~lP~vtelHmS~-N~~r 159 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD--DLPKVTELHMSD-NSLR 159 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh--cchhhhhhhhcc-chhh
Confidence 4555555555555544311111 23445555555554433 2323344 566666666666 6443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.0019 Score=52.02 Aligned_cols=60 Identities=25% Similarity=0.363 Sum_probs=26.5
Q ss_pred CCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960 12 LLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP 76 (176)
Q Consensus 12 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP 76 (176)
+.+.|+..++.|+.+. -...++.|+.|.|+-|.|+.+- .+. .+++|+.|.|.. |.|..+.
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~--rCtrLkElYLRk-N~I~sld 79 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQ--RCTRLKELYLRK-NCIESLD 79 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHH--HHHHHHHHHHHh-cccccHH
Confidence 3444444444444432 2344444455555555444442 233 444444444444 4444433
No 67
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.32 E-value=0.0011 Score=52.17 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=63.1
Q ss_pred cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY 83 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L 83 (176)
++......+.||++.|++..+-..+.-++.|..|+++.|+|..+|+.++ .+..+..+++.. |..+..|.+... ++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~--q~~e~~~~~~~~-n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAK--QQRETVNAASHK-NNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHH--HHHHHHHHHhhc-cchhhCCccccccCCc
Confidence 3566777888888888888887788888888888888888888888888 888888888888 888888865543 33
Q ss_pred cceeeccC
Q 036960 84 PEKVDTFM 91 (176)
Q Consensus 84 ~~~L~l~~ 91 (176)
++++..+
T Consensus 114 -k~~e~k~ 120 (326)
T KOG0473|consen 114 -KKNEQKK 120 (326)
T ss_pred -chhhhcc
Confidence 4444433
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=0.0029 Score=51.00 Aligned_cols=63 Identities=30% Similarity=0.389 Sum_probs=53.7
Q ss_pred cCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCC
Q 036960 8 GCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTL 72 (176)
Q Consensus 8 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l 72 (176)
..|+.|++|.|+-|+|+.+- .+..++.|++|.|..|.|..+-+-+.+.++++|+.|+|.. |.-
T Consensus 38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E-NPC 100 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE-NPC 100 (388)
T ss_pred HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc-CCc
Confidence 46899999999999999984 6889999999999999999886643222899999999998 766
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.35 E-value=0.33 Score=33.43 Aligned_cols=68 Identities=15% Similarity=0.280 Sum_probs=38.6
Q ss_pred ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh
Q 036960 7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
|.++++|+.+.+.++ ++.++. .+.+..+|+.+.+.+ .+..++.. |. .+++|+.+.+.. + +..++....
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~--~~~~l~~i~~~~-~-~~~i~~~~f 100 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS--NCTNLKNIDIPS-N-ITEIGSSSF 100 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT--T-TTECEEEETT-T--BEEHTTTT
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc--ccccccccccCc-c-ccEEchhhh
Confidence 556667888887664 666665 567776788888865 56656543 55 677888887765 4 555554433
No 70
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.04 E-value=0.092 Score=26.67 Aligned_cols=17 Identities=47% Similarity=0.729 Sum_probs=8.4
Q ss_pred CCcEEEeeCCCCcccCc
Q 036960 35 SLKRMNLVENKLDNLPI 51 (176)
Q Consensus 35 ~L~~L~l~~n~l~~lP~ 51 (176)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 34455555555555543
No 71
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.78 E-value=0.11 Score=26.44 Aligned_cols=18 Identities=44% Similarity=0.643 Sum_probs=16.2
Q ss_pred CCCcEEeccCCCCccccc
Q 036960 11 SLLKELNLCVNDFQRLPA 28 (176)
Q Consensus 11 ~~L~~L~L~~n~l~~lp~ 28 (176)
++|++|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468999999999999996
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=0.0073 Score=49.17 Aligned_cols=79 Identities=24% Similarity=0.261 Sum_probs=60.4
Q ss_pred CCcEEeccCCCCcc--ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCCCCchhhh----cCcc
Q 036960 12 LLKELNLCVNDFQR--LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQSLPKLLL----PSYP 84 (176)
Q Consensus 12 ~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~----~~L~ 84 (176)
.|++|||++..|+. +-.-+..+.+|+.|.+.|+++. .+-..+. +-.+|+.|+++.|+-+++....+- ..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA--kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L- 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA--KNSNLVRLNLSMCSGFTENALQLLLSSCSRL- 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh--ccccceeeccccccccchhHHHHHHHhhhhH-
Confidence 48899999988876 5446788899999999999988 5656677 788999999999998877543221 255
Q ss_pred ceeeccCCc
Q 036960 85 EKVDTFMLE 93 (176)
Q Consensus 85 ~~L~l~~~~ 93 (176)
..|+++.|.
T Consensus 263 ~~LNlsWc~ 271 (419)
T KOG2120|consen 263 DELNLSWCF 271 (419)
T ss_pred hhcCchHhh
Confidence 666666653
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.87 E-value=0.0059 Score=48.08 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=57.2
Q ss_pred cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCC
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTL 72 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l 72 (176)
.++.++.|..|+++.|++..+|.+++.+..+..+++..|..++.|.+++ .++.++.++... |.+
T Consensus 60 n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~--k~~~~k~~e~k~-~~~ 123 (326)
T KOG0473|consen 60 NFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK--KEPHPKKNEQKK-TEF 123 (326)
T ss_pred chHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc--ccCCcchhhhcc-Ccc
Confidence 3455677888999999999999999999999999999999999999999 999999999988 664
No 74
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=90.55 E-value=0.098 Score=43.31 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=16.5
Q ss_pred CCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCc
Q 036960 11 SLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLD 47 (176)
Q Consensus 11 ~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~ 47 (176)
+.|+.+.+..|.|.. +-..+..+++|+.||+..|.++
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 444444444444322 1223444455555555555444
No 75
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.58 E-value=0.16 Score=41.63 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=15.3
Q ss_pred CCcEEeccCCCCcccc---ccccCCCCCcEEEeeCCC
Q 036960 12 LLKELNLCVNDFQRLP---ASIGSLSSLKRMNLVENK 45 (176)
Q Consensus 12 ~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~l~~n~ 45 (176)
.++.++|.+|.|.... .-+.+++.|++|+++.|.
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence 3444455555444421 123444555555555554
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.57 E-value=0.27 Score=24.95 Aligned_cols=16 Identities=25% Similarity=0.659 Sum_probs=9.2
Q ss_pred CCCcEEEeeCCCCccc
Q 036960 34 SSLKRMNLVENKLDNL 49 (176)
Q Consensus 34 ~~L~~L~l~~n~l~~l 49 (176)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666665544
No 77
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=87.05 E-value=0.22 Score=41.26 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=57.1
Q ss_pred cCCCCCcEEeccCCCCcccc-----ccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCCCc-
Q 036960 8 GCLSLLKELNLCVNDFQRLP-----ASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQSLP- 76 (176)
Q Consensus 8 ~~l~~L~~L~L~~n~l~~lp-----~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~lP- 76 (176)
..-+.|+++....|.+..-+ ..+...+.|+.+.++.|.|.. +-..+. .+++|+.||+.+ |.++.--
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~--~~~~LevLdl~D-Ntft~egs 230 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE--HCPHLEVLDLRD-NTFTLEGS 230 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH--hCCcceeeeccc-chhhhHHH
Confidence 44567899999998887633 346777889999999998762 223456 789999999999 8885321
Q ss_pred ----hhhh--cCccceeeccCC
Q 036960 77 ----KLLL--PSYPEKVDTFML 92 (176)
Q Consensus 77 ----~~l~--~~L~~~L~l~~~ 92 (176)
..++ ++| +.+++++|
T Consensus 231 ~~LakaL~s~~~L-~El~l~dc 251 (382)
T KOG1909|consen 231 VALAKALSSWPHL-RELNLGDC 251 (382)
T ss_pred HHHHHHhcccchh-eeeccccc
Confidence 1111 256 78888877
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.48 E-value=0.41 Score=38.85 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=44.9
Q ss_pred cCCCCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCc----ccCcc-------cccccCCccceeeccccCC
Q 036960 8 GCLSLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLD----NLPIT-------ISIKQISPLRTLELRNCNT 71 (176)
Q Consensus 8 ~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~----~lP~~-------~~~~~l~~L~~L~l~~cn~ 71 (176)
..+..++.++||+|.|.. +...+.+-.+|+..+++.-... ++|+. +- ++++|+..++|. |-
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLl--kcp~l~~v~LSD-NA 103 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALL--KCPRLQKVDLSD-NA 103 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHh--cCCcceeeeccc-cc
Confidence 346778888999988754 3334555566666666543211 23322 23 456666666666 66
Q ss_pred CC-CCchhhhc------CccceeeccCC
Q 036960 72 LQ-SLPKLLLP------SYPEKVDTFML 92 (176)
Q Consensus 72 l~-~lP~~l~~------~L~~~L~l~~~ 92 (176)
++ ..|+.+.. .| .+|.+++|
T Consensus 104 fg~~~~e~L~d~is~~t~l-~HL~l~Nn 130 (388)
T COG5238 104 FGSEFPEELGDLISSSTDL-VHLKLNNN 130 (388)
T ss_pred cCcccchHHHHHHhcCCCc-eeEEeecC
Confidence 63 34443332 44 55555544
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.47 E-value=0.64 Score=22.56 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=7.1
Q ss_pred CCCcEEeccCCCCcc
Q 036960 11 SLLKELNLCVNDFQR 25 (176)
Q Consensus 11 ~~L~~L~L~~n~l~~ 25 (176)
++|++|++++|.|+.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 455566666665543
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.10 E-value=0.37 Score=37.11 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=48.3
Q ss_pred CCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCC-Cc-----ccCcccccccCCccceeeccccCCCCCCch-hhh--c
Q 036960 12 LLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENK-LD-----NLPITISIKQISPLRTLELRNCNTLQSLPK-LLL--P 81 (176)
Q Consensus 12 ~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~-l~-----~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~-~l~--~ 81 (176)
.++.++.++..|...- +.+..++.++.|.+.++. +. .+.. -.++|+.|++++|.+|++--- .+. +
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-----~~~~L~~L~lsgC~rIT~~GL~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-----LAPSLQDLDLSGCPRITDGGLACLLKLK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc-----cccchheeeccCCCeechhHHHHHHHhh
Confidence 4677888888777632 357777888888887774 22 2221 246899999999888876321 111 2
Q ss_pred CccceeeccCCcC
Q 036960 82 SYPEKVDTFMLES 94 (176)
Q Consensus 82 ~L~~~L~l~~~~~ 94 (176)
+| +.|.+.+++.
T Consensus 177 nL-r~L~l~~l~~ 188 (221)
T KOG3864|consen 177 NL-RRLHLYDLPY 188 (221)
T ss_pred hh-HHHHhcCchh
Confidence 55 5566655443
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.03 E-value=2.5 Score=21.48 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=7.5
Q ss_pred CCcEEeccCCCCc
Q 036960 12 LLKELNLCVNDFQ 24 (176)
Q Consensus 12 ~L~~L~L~~n~l~ 24 (176)
+|++|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.84 E-value=2.3 Score=21.01 Aligned_cols=15 Identities=33% Similarity=0.762 Sum_probs=9.2
Q ss_pred CccceeeccccCCCC
Q 036960 59 SPLRTLELRNCNTLQ 73 (176)
Q Consensus 59 ~~L~~L~l~~cn~l~ 73 (176)
++|+.|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 456666666665554
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.50 E-value=2.4 Score=37.28 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=42.0
Q ss_pred CCCCCcEEeccCCCCcccc---ccccCCCCCcEEEeeCC--CCcccCcccccccCCccceeeccccCCCC
Q 036960 9 CLSLLKELNLCVNDFQRLP---ASIGSLSSLKRMNLVEN--KLDNLPITISIKQISPLRTLELRNCNTLQ 73 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~l~~n--~l~~lP~~~~~~~l~~L~~L~l~~cn~l~ 73 (176)
+.+.+..+.|++|++..+- +-....++|..|+|++| .+..-++.-. .+...|+.|.+.+ |.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K-~k~l~Leel~l~G-NPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK-LKGLPLEELVLEG-NPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh-hcCCCHHHeeecC-Cccc
Confidence 4566778889999877643 33455688999999999 4444333211 0334688888999 8883
No 84
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=69.91 E-value=8.5 Score=31.46 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=51.6
Q ss_pred cccCCCCCcEEeccCCCCcc-ccc----cccCCCCCcEEEeeCCCCcccCcc-cc-----------cccCCccceeeccc
Q 036960 6 DIGCLSLLKELNLCVNDFQR-LPA----SIGSLSSLKRMNLVENKLDNLPIT-IS-----------IKQISPLRTLELRN 68 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~-lp~----~~~~l~~L~~L~l~~n~l~~lP~~-~~-----------~~~l~~L~~L~l~~ 68 (176)
.+-++++|+..+||+|.+.. .|+ -++.-+.|..|.+++|.+..+... ++ +++-|.|++.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 35578899999999998765 444 356778899999999987654321 11 02457788888888
Q ss_pred cCCCCCCchhh
Q 036960 69 CNTLQSLPKLL 79 (176)
Q Consensus 69 cn~l~~lP~~l 79 (176)
|++...|...
T Consensus 167 -NRlengs~~~ 176 (388)
T COG5238 167 -NRLENGSKEL 176 (388)
T ss_pred -chhccCcHHH
Confidence 8888777543
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.42 E-value=2.9 Score=32.37 Aligned_cols=88 Identities=14% Similarity=0.215 Sum_probs=54.0
Q ss_pred cccccccCCCCCcEEEeeCCCCcccC-cccccccCCccceeeccccCCCC-----CCchhhhcCccceeeccCCcCCccc
Q 036960 25 RLPASIGSLSSLKRMNLVENKLDNLP-ITISIKQISPLRTLELRNCNTLQ-----SLPKLLLPSYPEKVDTFMLESLSKL 98 (176)
Q Consensus 25 ~lp~~~~~l~~L~~L~l~~n~l~~lP-~~~~~~~l~~L~~L~l~~cn~l~-----~lP~~l~~~L~~~L~l~~~~~L~~l 98 (176)
.+|.....-..++.++.++..|.... +.+. +++.++.|.+.+|..+. .+- .+.++| +.|++++|+.++.-
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~--~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L-~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLR--DLRSIKSLSLANCKYFDDWCLERLG-GLAPSL-QDLDLSGCPRITDG 167 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHh--ccchhhhheeccccchhhHHHHHhc-ccccch-heeeccCCCeechh
Confidence 44543333445788888888887553 3366 77888888888887764 233 244588 88888888877654
Q ss_pred --ccccCCCCccEEEeeCCc
Q 036960 99 --FRIITTRKLTYFIFTKCL 116 (176)
Q Consensus 99 --~~~~~~~~l~~l~~~~c~ 116 (176)
.-.....+++.+.+.+..
T Consensus 168 GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 168 GLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHHHHhhhhHHHHhcCch
Confidence 111133445555554433
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=60.72 E-value=6.4 Score=33.75 Aligned_cols=62 Identities=24% Similarity=0.261 Sum_probs=32.4
Q ss_pred CCCCcEEeccCC-CCccc--cccccCCCCCcEEEeeCCCCc---ccCcccccccCCccceeeccccCCCC
Q 036960 10 LSLLKELNLCVN-DFQRL--PASIGSLSSLKRMNLVENKLD---NLPITISIKQISPLRTLELRNCNTLQ 73 (176)
Q Consensus 10 l~~L~~L~L~~n-~l~~l--p~~~~~l~~L~~L~l~~n~l~---~lP~~~~~~~l~~L~~L~l~~cn~l~ 73 (176)
.++|+.+.++.+ +++.. ..--.++.+|+.+++.++... ++-..-. +++.|+.+.+++|..++
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~--~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR--NCPRLRVLSLSHCELIT 386 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc--CCchhccCChhhhhhhh
Confidence 455666666666 34432 112244566666666665422 1222223 56677777777765554
No 87
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=58.15 E-value=7.9 Score=32.55 Aligned_cols=106 Identities=22% Similarity=0.291 Sum_probs=48.1
Q ss_pred CCCCcEEeccCC-CCcc--ccccccCCCCCcEEEeeCC--CCcccC----cccccccCCccceeeccccCCCCCCc-hhh
Q 036960 10 LSLLKELNLCVN-DFQR--LPASIGSLSSLKRMNLVEN--KLDNLP----ITISIKQISPLRTLELRNCNTLQSLP-KLL 79 (176)
Q Consensus 10 l~~L~~L~L~~n-~l~~--lp~~~~~l~~L~~L~l~~n--~l~~lP----~~~~~~~l~~L~~L~l~~cn~l~~lP-~~l 79 (176)
.+.|+.+.+.++ .++. +-......++|+.|+++++ .+...+ .... .+.+|+.|+++.|..++..- ..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS--ICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh--hcCCcCccchhhhhccCchhHHHH
Confidence 455555655555 4444 2234555666666666652 111111 1122 45566666666644443221 011
Q ss_pred ---hcCccceeeccCCcCCccc--cccc-CCCCccEEEeeCCcCc
Q 036960 80 ---LPSYPEKVDTFMLESLSKL--FRII-TTRKLTYFIFTKCLKL 118 (176)
Q Consensus 80 ---~~~L~~~L~l~~~~~L~~l--~~~~-~~~~l~~l~~~~c~~l 118 (176)
.++| +.|.+.+|..+... .... ....++.++++.|..+
T Consensus 265 ~~~c~~L-~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNL-ETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCc-ceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 1245 55555555443211 0111 1233666666666555
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=56.32 E-value=8.7 Score=40.08 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=27.1
Q ss_pred eccCCCCccccc-cccCCCCCcEEEeeCCCCc
Q 036960 17 NLCVNDFQRLPA-SIGSLSSLKRMNLVENKLD 47 (176)
Q Consensus 17 ~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~ 47 (176)
||++|+|+.+|. .|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 588999999887 6788999999999999765
No 89
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=52.39 E-value=6.2 Score=33.18 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=7.1
Q ss_pred CCCCCcEEEeeCCC
Q 036960 32 SLSSLKRMNLVENK 45 (176)
Q Consensus 32 ~l~~L~~L~l~~n~ 45 (176)
.+.+|+.|+++++.
T Consensus 241 ~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCG 254 (482)
T ss_pred hcCCcCccchhhhh
Confidence 34455555555544
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=51.21 E-value=9.2 Score=39.92 Aligned_cols=31 Identities=16% Similarity=0.409 Sum_probs=27.2
Q ss_pred EeeCCCCcccCcc-cccccCCccceeeccccCCCC
Q 036960 40 NLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQ 73 (176)
Q Consensus 40 ~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~ 73 (176)
||++|+|+.||.. |. .+++|+.|+|++ |.+.
T Consensus 1 DLSnN~LstLp~g~F~--~L~sL~~LdLsg-NPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICA--NLCNLSEIDLSG-NPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhc--cCCCceEEEeeC-Cccc
Confidence 5889999999886 77 899999999999 8773
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.04 E-value=34 Score=30.43 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=36.8
Q ss_pred cCCCCCcEEEeeCCCCcccCc--cc-ccccCCccceeeccccC--CCCCCchhhhc----CccceeeccCCc
Q 036960 31 GSLSSLKRMNLVENKLDNLPI--TI-SIKQISPLRTLELRNCN--TLQSLPKLLLP----SYPEKVDTFMLE 93 (176)
Q Consensus 31 ~~l~~L~~L~l~~n~l~~lP~--~~-~~~~l~~L~~L~l~~cn--~l~~lP~~l~~----~L~~~L~l~~~~ 93 (176)
.+.+.+..++|++|++..+-. ++ . .-++|..|+|++ | .+..-+ ++.+ .| +.|.+.+.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq--~apklk~L~LS~-N~~~~~~~~-el~K~k~l~L-eel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQ--IAPKLKTLDLSH-NHSKISSES-ELDKLKGLPL-EELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHH--hcchhheeeccc-chhhhcchh-hhhhhcCCCH-HHeeecCCc
Confidence 345678888999999886632 22 3 457999999999 8 444333 2222 34 556555543
No 92
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=22.24 E-value=41 Score=29.08 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=37.6
Q ss_pred CCCCCcEEeccCCCC-cc--ccccccCCCCCcEEEeeCCC-Ccc-----cCcccccccCCccceeeccccCCC
Q 036960 9 CLSLLKELNLCVNDF-QR--LPASIGSLSSLKRMNLVENK-LDN-----LPITISIKQISPLRTLELRNCNTL 72 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l-~~--lp~~~~~l~~L~~L~l~~n~-l~~-----lP~~~~~~~l~~L~~L~l~~cn~l 72 (176)
+.+.|+.+++..+.. +. +-.--.+.+.|+.+.++++. |+. +-..-. .+..|..+.+++|..+
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c--~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC--SLEGLEVLELDNCPLI 414 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc--cccccceeeecCCCCc
Confidence 456777788777743 32 33334567778888888775 332 222234 5667778888886554
Done!