Query 036960
Match_columns 176
No_of_seqs 252 out of 1805
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 11:46:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.5 4E-13 1.4E-17 108.4 10.7 117 2-122 141-270 (328)
2 4fcg_A Uncharacterized protein 99.4 8.5E-13 2.9E-17 106.5 10.0 114 2-120 118-244 (328)
3 3e6j_A Variable lymphocyte rec 99.4 5.2E-12 1.8E-16 96.8 11.5 108 4-116 57-170 (229)
4 2v9t_B SLIT homolog 2 protein 99.3 8.5E-12 2.9E-16 95.2 11.3 105 6-115 51-162 (220)
5 2wfh_A SLIT homolog 2 protein 99.3 8.9E-12 3E-16 93.4 11.1 108 2-116 24-137 (193)
6 2ell_A Acidic leucine-rich nuc 99.3 3.1E-12 1.1E-16 93.1 8.1 101 9-115 22-130 (168)
7 2je0_A Acidic leucine-rich nuc 99.3 2.4E-12 8.3E-17 91.9 6.8 102 9-116 15-124 (149)
8 1p9a_G Platelet glycoprotein I 99.3 1.5E-11 5.2E-16 97.5 11.4 108 3-115 92-205 (290)
9 4b8c_D Glucose-repressible alc 99.3 4E-12 1.4E-16 112.8 8.9 115 3-122 216-333 (727)
10 4g8a_A TOLL-like receptor 4; l 99.3 7.5E-12 2.6E-16 107.3 10.1 63 12-77 53-117 (635)
11 2wfh_A SLIT homolog 2 protein 99.3 9E-12 3.1E-16 93.3 9.2 86 2-91 45-135 (193)
12 2v9t_B SLIT homolog 2 protein 99.3 2.1E-11 7.3E-16 92.9 10.9 107 2-115 25-138 (220)
13 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4.2E-16 91.2 9.1 95 14-115 15-115 (174)
14 3e6j_A Variable lymphocyte rec 99.3 2.6E-11 8.9E-16 92.9 11.2 107 2-115 33-145 (229)
15 3m19_A Variable lymphocyte rec 99.3 2.5E-11 8.7E-16 93.9 11.0 83 6-92 54-141 (251)
16 1ogq_A PGIP-2, polygalacturona 99.3 5.8E-12 2E-16 100.8 7.6 86 3-92 68-159 (313)
17 3g39_A Variable lymphocyte rec 99.3 1.6E-11 5.5E-16 90.1 9.1 96 13-115 11-112 (170)
18 4b8c_D Glucose-repressible alc 99.3 5E-12 1.7E-16 112.1 7.2 88 2-93 238-327 (727)
19 2o6s_A Variable lymphocyte rec 99.3 4.4E-11 1.5E-15 89.8 11.4 107 7-118 48-161 (208)
20 1dce_A Protein (RAB geranylger 99.3 1.6E-11 5.5E-16 106.1 9.7 98 12-116 442-544 (567)
21 3m19_A Variable lymphocyte rec 99.3 4.8E-11 1.6E-15 92.3 11.5 110 4-118 76-192 (251)
22 4ezg_A Putative uncharacterize 99.3 3.4E-11 1.2E-15 90.0 10.2 105 6-115 61-169 (197)
23 2ifg_A High affinity nerve gro 99.2 1.9E-11 6.5E-16 98.6 8.9 86 2-92 23-113 (347)
24 4g8a_A TOLL-like receptor 4; l 99.2 3E-11 1E-15 103.6 10.6 108 3-115 67-183 (635)
25 4eco_A Uncharacterized protein 99.2 2E-11 6.8E-16 106.5 9.3 108 3-115 198-340 (636)
26 1ogq_A PGIP-2, polygalacturona 99.2 1.7E-11 5.7E-16 98.1 8.0 111 2-116 92-208 (313)
27 1p9a_G Platelet glycoprotein I 99.2 4.7E-11 1.6E-15 94.7 10.5 103 8-115 74-182 (290)
28 1w8a_A SLIT protein; signaling 99.2 4E-11 1.4E-15 89.5 9.5 108 2-116 22-137 (192)
29 2o6r_A Variable lymphocyte rec 99.2 9.6E-11 3.3E-15 85.9 11.3 110 2-118 21-137 (177)
30 2v70_A SLIT-2, SLIT homolog 2 99.2 6.9E-11 2.4E-15 90.1 10.8 104 7-115 53-163 (220)
31 4ezg_A Putative uncharacterize 99.2 5.8E-11 2E-15 88.7 10.1 106 4-115 81-191 (197)
32 3zyi_A Leucine-rich repeat-con 99.2 4.8E-11 1.6E-15 99.7 10.2 91 4-98 92-187 (452)
33 1a9n_A U2A', U2A'; complex (nu 99.2 3.1E-11 1.1E-15 88.6 7.9 104 6-116 14-124 (176)
34 3rgz_A Protein brassinosteroid 99.2 1.4E-11 4.8E-16 109.5 7.0 94 3-100 624-722 (768)
35 3zyi_A Leucine-rich repeat-con 99.2 5.7E-11 1.9E-15 99.3 10.3 108 4-115 116-228 (452)
36 2o6q_A Variable lymphocyte rec 99.2 1.2E-10 4E-15 91.0 11.3 68 6-76 56-125 (270)
37 3rfs_A Internalin B, repeat mo 99.2 5.9E-10 2E-14 87.2 15.3 105 7-116 105-216 (272)
38 1xeu_A Internalin C; cellular 99.2 3.6E-11 1.2E-15 94.1 8.1 80 7-92 37-116 (263)
39 3zyj_A Leucine-rich repeat-con 99.2 7E-11 2.4E-15 98.4 10.2 90 5-98 82-176 (440)
40 3zyj_A Leucine-rich repeat-con 99.2 7.3E-11 2.5E-15 98.3 10.1 107 5-115 106-217 (440)
41 3rfs_A Internalin B, repeat mo 99.2 1.5E-10 5E-15 90.7 11.3 105 6-115 80-191 (272)
42 2o6q_A Variable lymphocyte rec 99.2 1.7E-10 5.9E-15 90.1 11.4 81 8-92 82-167 (270)
43 1w8a_A SLIT protein; signaling 99.2 5E-11 1.7E-15 88.9 7.8 82 7-92 50-136 (192)
44 2o6r_A Variable lymphocyte rec 99.2 1.1E-10 3.7E-15 85.6 9.1 86 3-92 43-134 (177)
45 1xku_A Decorin; proteoglycan, 99.2 1.3E-10 4.6E-15 93.0 10.4 106 3-115 46-155 (330)
46 2xwt_C Thyrotropin receptor; s 99.2 5.9E-11 2E-15 91.0 7.9 105 6-115 50-166 (239)
47 2xot_A Amphoterin-induced prot 99.2 1.3E-10 4.5E-15 94.6 10.3 102 9-115 62-173 (361)
48 2ft3_A Biglycan; proteoglycan, 99.2 1.5E-10 5.1E-15 92.9 10.4 107 2-115 47-157 (332)
49 1ds9_A Outer arm dynein; leuci 99.2 1E-12 3.6E-17 98.4 -2.2 107 3-116 40-151 (198)
50 2o6s_A Variable lymphocyte rec 99.2 2.8E-10 9.6E-15 85.4 11.2 106 3-115 22-134 (208)
51 2xwt_C Thyrotropin receptor; s 99.2 6.6E-11 2.2E-15 90.7 7.8 113 3-121 71-195 (239)
52 4ecn_A Leucine-rich repeat pro 99.2 6.6E-11 2.3E-15 106.9 9.0 108 3-115 440-583 (876)
53 2z80_A TOLL-like receptor 2, v 99.2 7.5E-11 2.6E-15 95.4 8.5 89 6-98 71-165 (353)
54 2v70_A SLIT-2, SLIT homolog 2 99.2 1.1E-10 3.8E-15 88.9 8.8 84 5-92 75-163 (220)
55 3o6n_A APL1; leucine-rich repe 99.2 1.8E-10 6.2E-15 94.2 10.5 105 5-115 242-349 (390)
56 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-10 5.3E-15 84.9 9.0 103 7-115 37-150 (176)
57 2ell_A Acidic leucine-rich nuc 99.2 2.8E-10 9.6E-15 82.6 10.2 110 2-117 40-159 (168)
58 1xeu_A Internalin C; cellular 99.2 3.1E-10 1.1E-14 88.7 11.2 100 6-114 58-159 (263)
59 4glp_A Monocyte differentiatio 99.2 4E-11 1.4E-15 95.5 6.2 106 4-115 162-282 (310)
60 2je0_A Acidic leucine-rich nuc 99.2 1.9E-10 6.4E-15 82.0 9.1 93 2-100 33-130 (149)
61 1h6u_A Internalin H; cell adhe 99.2 3.1E-10 1E-14 90.6 11.4 65 7-76 59-123 (308)
62 1h6u_A Internalin H; cell adhe 99.2 2.9E-10 9.9E-15 90.7 11.2 104 3-115 78-183 (308)
63 4fmz_A Internalin; leucine ric 99.1 3.1E-10 1.1E-14 91.1 11.3 103 6-115 61-165 (347)
64 1ozn_A Reticulon 4 receptor; N 99.1 2.9E-10 1E-14 89.2 10.8 38 7-44 52-90 (285)
65 1h6t_A Internalin B; cell adhe 99.1 3.1E-10 1.1E-14 89.9 10.8 79 7-92 64-144 (291)
66 1ozn_A Reticulon 4 receptor; N 99.1 3.7E-10 1.3E-14 88.6 11.1 107 4-115 73-187 (285)
67 3v47_A TOLL-like receptor 5B a 99.1 2.3E-10 7.9E-15 95.0 10.1 115 3-122 291-412 (455)
68 2z81_A CD282 antigen, TOLL-lik 99.1 1.5E-10 5.2E-15 98.3 9.0 82 7-92 357-441 (549)
69 2z80_A TOLL-like receptor 2, v 99.1 4.2E-10 1.5E-14 90.9 11.0 110 2-118 45-162 (353)
70 2z66_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 89.4 10.4 108 4-116 143-259 (306)
71 1h6t_A Internalin B; cell adhe 99.1 5.7E-10 2E-14 88.4 11.5 101 7-115 86-188 (291)
72 1dce_A Protein (RAB geranylger 99.1 3.1E-10 1.1E-14 98.1 10.6 91 2-99 455-549 (567)
73 3oja_B Anopheles plasmodium-re 99.1 2.8E-10 9.5E-15 98.4 10.3 107 4-116 247-356 (597)
74 3g39_A Variable lymphocyte rec 99.1 5.1E-10 1.8E-14 82.0 10.1 85 2-92 23-112 (170)
75 1wwl_A Monocyte differentiatio 99.1 1.2E-10 4E-15 92.9 6.9 106 4-115 166-284 (312)
76 3vq2_A TLR4, TOLL-like recepto 99.1 5.1E-10 1.7E-14 96.2 10.8 106 5-115 50-163 (606)
77 2z81_A CD282 antigen, TOLL-lik 99.1 2.6E-10 8.8E-15 96.9 8.5 66 5-73 44-111 (549)
78 2r9u_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 83.5 7.8 85 2-92 26-115 (174)
79 2z7x_B TOLL-like receptor 1, v 99.1 3.7E-10 1.3E-14 95.5 9.2 108 3-115 340-454 (520)
80 3rgz_A Protein brassinosteroid 99.1 6.4E-10 2.2E-14 98.9 11.1 64 3-68 410-475 (768)
81 2xot_A Amphoterin-induced prot 99.1 4.5E-10 1.5E-14 91.4 9.3 90 5-99 82-179 (361)
82 1jl5_A Outer protein YOPM; leu 99.1 7.4E-10 2.5E-14 93.1 10.7 102 3-115 146-247 (454)
83 2z62_A TOLL-like receptor 4, v 99.1 6.9E-10 2.4E-14 86.7 9.8 106 6-116 47-160 (276)
84 4eco_A Uncharacterized protein 99.1 3E-10 1E-14 99.1 8.4 105 10-119 487-601 (636)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 6E-10 2.1E-14 95.4 10.1 105 3-114 46-155 (562)
86 2z7x_B TOLL-like receptor 1, v 99.1 4.3E-10 1.5E-14 95.1 9.0 107 2-115 14-125 (520)
87 4ecn_A Leucine-rich repeat pro 99.1 1.6E-10 5.4E-15 104.4 6.6 107 3-114 481-604 (876)
88 3t6q_A CD180 antigen; protein- 99.1 7.7E-10 2.6E-14 95.1 10.6 107 4-115 50-163 (606)
89 2z62_A TOLL-like receptor 4, v 99.0 1.2E-09 3.9E-14 85.4 10.3 83 6-92 71-159 (276)
90 3vq2_A TLR4, TOLL-like recepto 99.0 7.3E-10 2.5E-14 95.2 9.9 110 3-117 440-557 (606)
91 2id5_A Lingo-1, leucine rich r 99.0 9.5E-10 3.2E-14 92.1 10.0 68 5-75 50-119 (477)
92 1m9s_A Internalin B; cell inva 99.0 1.4E-09 4.8E-14 94.7 10.9 101 6-114 60-162 (605)
93 1wwl_A Monocyte differentiatio 99.0 3.1E-10 1.1E-14 90.5 6.2 103 9-115 93-211 (312)
94 3o6n_A APL1; leucine-rich repe 99.0 4.2E-10 1.4E-14 92.0 7.1 86 3-92 264-349 (390)
95 4ay9_X Follicle-stimulating ho 99.0 6.7E-10 2.3E-14 90.0 8.1 103 7-113 149-254 (350)
96 2ft3_A Biglycan; proteoglycan, 99.0 1.1E-09 3.8E-14 87.7 9.3 107 3-116 187-305 (332)
97 1ziw_A TOLL-like receptor 3; i 99.0 1.6E-09 5.5E-14 94.4 11.0 108 3-115 472-594 (680)
98 1xku_A Decorin; proteoglycan, 99.0 2.8E-09 9.4E-14 85.3 11.4 105 4-115 164-273 (330)
99 3v47_A TOLL-like receptor 5B a 99.0 1E-09 3.4E-14 91.1 9.0 85 4-92 316-405 (455)
100 1m9s_A Internalin B; cell inva 99.0 1.8E-09 6.2E-14 94.0 10.7 101 7-115 83-185 (605)
101 2z66_A Variable lymphocyte rec 99.0 1.3E-09 4.6E-14 86.1 9.1 105 6-115 121-233 (306)
102 2z63_A TOLL-like receptor 4, v 99.0 1.8E-09 6.3E-14 91.8 10.3 106 5-115 46-159 (570)
103 4glp_A Monocyte differentiatio 99.0 4.2E-10 1.4E-14 89.6 5.7 105 7-116 141-262 (310)
104 3bz5_A Internalin-J, INLJ; leu 99.0 3.1E-09 1.1E-13 89.4 11.1 78 6-91 59-136 (457)
105 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 2.1E-09 7.1E-14 92.0 10.2 107 3-114 369-482 (562)
106 3oja_A Leucine-rich immune mol 99.0 1.1E-09 3.6E-14 92.9 7.8 109 4-118 137-250 (487)
107 3oja_B Anopheles plasmodium-re 99.0 7.7E-10 2.6E-14 95.6 7.1 87 3-93 270-356 (597)
108 3bz5_A Internalin-J, INLJ; leu 99.0 4.1E-09 1.4E-13 88.6 11.1 83 7-97 81-163 (457)
109 2id5_A Lingo-1, leucine rich r 99.0 3.2E-09 1.1E-13 88.9 10.3 85 2-92 25-114 (477)
110 3o53_A Protein LRIM1, AGAP0063 99.0 1.5E-09 5.2E-14 86.6 7.7 108 5-118 138-250 (317)
111 4fmz_A Internalin; leucine ric 99.0 3E-09 1E-13 85.3 9.4 106 7-120 40-147 (347)
112 3cvr_A Invasion plasmid antige 98.9 4.1E-09 1.4E-13 91.2 10.6 58 11-77 80-137 (571)
113 1ziw_A TOLL-like receptor 3; i 98.9 2.4E-09 8.3E-14 93.2 9.2 67 7-76 45-113 (680)
114 1o6v_A Internalin A; bacterial 98.9 2.9E-09 9.9E-14 89.2 9.3 80 6-92 63-144 (466)
115 4ay9_X Follicle-stimulating ho 98.9 2.9E-09 9.8E-14 86.2 8.8 111 2-118 23-141 (350)
116 1o6v_A Internalin A; bacterial 98.9 1.1E-08 3.8E-13 85.7 11.6 100 8-115 262-363 (466)
117 3t6q_A CD180 antigen; protein- 98.9 6E-09 2E-13 89.5 10.0 108 2-116 26-140 (606)
118 3o53_A Protein LRIM1, AGAP0063 98.9 2.3E-09 7.7E-14 85.6 6.8 85 4-93 161-248 (317)
119 1jl5_A Outer protein YOPM; leu 98.9 9.3E-09 3.2E-13 86.4 10.7 97 6-114 190-286 (454)
120 3cvr_A Invasion plasmid antige 98.9 7.2E-09 2.4E-13 89.7 10.0 77 12-100 121-197 (571)
121 3g06_A SSPH2 (leucine-rich rep 98.9 8.6E-09 2.9E-13 90.0 10.4 78 2-92 54-131 (622)
122 2z63_A TOLL-like receptor 4, v 98.9 5.8E-09 2E-13 88.7 9.0 85 4-92 69-159 (570)
123 3j0a_A TOLL-like receptor 5; m 98.9 9.5E-09 3.3E-13 92.2 10.4 107 4-115 41-158 (844)
124 3oja_A Leucine-rich immune mol 98.8 3.8E-09 1.3E-13 89.5 6.7 86 3-93 160-248 (487)
125 2ifg_A High affinity nerve gro 98.8 1.3E-08 4.5E-13 81.9 9.3 97 14-116 11-114 (347)
126 3j0a_A TOLL-like receptor 5; m 98.8 1.5E-08 5.1E-13 90.9 10.0 107 2-116 18-134 (844)
127 1ds9_A Outer arm dynein; leuci 98.8 1.1E-10 3.8E-15 87.2 -3.9 85 3-93 63-151 (198)
128 3g06_A SSPH2 (leucine-rich rep 98.8 4.5E-08 1.5E-12 85.5 11.1 97 11-116 181-295 (622)
129 2ast_B S-phase kinase-associat 98.7 5.9E-09 2E-13 83.1 3.7 88 6-96 88-182 (336)
130 2ast_B S-phase kinase-associat 98.7 5.5E-09 1.9E-13 83.3 2.4 106 7-116 138-258 (336)
131 2ca6_A RAN GTPase-activating p 98.6 1.6E-08 5.5E-13 82.6 2.1 105 7-116 183-314 (386)
132 2ca6_A RAN GTPase-activating p 98.5 5.9E-08 2E-12 79.1 2.7 86 6-93 211-314 (386)
133 3sb4_A Hypothetical leucine ri 98.4 6.1E-07 2.1E-11 71.8 6.8 95 10-120 225-325 (329)
134 3goz_A Leucine-rich repeat-con 98.4 2.4E-07 8.1E-12 75.1 4.4 62 10-74 21-94 (362)
135 3goz_A Leucine-rich repeat-con 98.3 1.8E-07 6.1E-12 75.9 2.3 78 11-92 138-235 (362)
136 3rw6_A Nuclear RNA export fact 98.2 1.6E-06 5.6E-11 68.1 5.8 64 9-76 168-237 (267)
137 3sb4_A Hypothetical leucine ri 98.1 4.3E-06 1.5E-10 66.8 6.4 82 3-98 241-326 (329)
138 1z7x_W Ribonuclease inhibitor; 98.1 9.3E-07 3.2E-11 73.2 2.2 67 4-73 49-126 (461)
139 1z7x_W Ribonuclease inhibitor; 98.1 7.4E-07 2.5E-11 73.8 1.4 65 5-72 221-296 (461)
140 3e4g_A ATP synthase subunit S, 97.7 2.2E-05 7.4E-10 58.0 4.0 94 26-122 53-156 (176)
141 3un9_A NLR family member X1; l 97.7 1.6E-05 5.6E-10 65.0 3.3 61 10-73 154-224 (372)
142 1io0_A Tropomodulin; LRR prote 97.7 1.5E-05 5.1E-10 58.8 2.6 106 6-116 31-162 (185)
143 3rfe_A Platelet glycoprotein I 97.6 9.4E-05 3.2E-09 51.7 5.7 55 14-73 11-68 (130)
144 3ogk_B Coronatine-insensitive 97.6 2.3E-05 7.8E-10 66.8 3.0 65 9-76 162-236 (592)
145 3e4g_A ATP synthase subunit S, 97.6 6.6E-05 2.2E-09 55.4 5.0 92 3-98 53-155 (176)
146 1io0_A Tropomodulin; LRR prote 97.6 5.2E-05 1.8E-09 55.8 3.7 82 27-113 29-129 (185)
147 3un9_A NLR family member X1; l 97.5 2.4E-05 8.4E-10 63.9 1.6 69 4-75 176-254 (372)
148 4fdw_A Leucine rich hypothetic 97.5 0.00033 1.1E-08 57.8 8.0 68 6-78 175-243 (401)
149 3ogk_B Coronatine-insensitive 97.4 0.00013 4.4E-09 62.1 5.1 58 8-67 189-251 (592)
150 3rw6_A Nuclear RNA export fact 97.4 6.7E-05 2.3E-09 58.9 2.9 61 3-66 188-258 (267)
151 2p1m_B Transport inhibitor res 97.4 2.7E-05 9.2E-10 66.3 0.7 104 9-116 103-222 (594)
152 2p1m_B Transport inhibitor res 97.3 0.0001 3.5E-09 62.7 2.8 100 9-113 128-243 (594)
153 3rfe_A Platelet glycoprotein I 97.0 0.00099 3.4E-08 46.3 4.7 44 2-47 24-68 (130)
154 4fs7_A Uncharacterized protein 96.8 0.00079 2.7E-08 54.9 3.9 36 29-67 292-328 (394)
155 4fdw_A Leucine rich hypothetic 96.7 0.003 1E-07 52.0 6.5 96 11-114 248-354 (401)
156 4h09_A Hypothetical leucine ri 96.6 0.0037 1.3E-07 50.4 6.1 69 7-80 236-306 (379)
157 4h09_A Hypothetical leucine ri 96.5 0.0038 1.3E-07 50.3 5.8 35 30-66 282-317 (379)
158 2ra8_A Uncharacterized protein 96.4 0.0011 3.7E-08 54.1 1.7 80 9-92 217-317 (362)
159 4gt6_A Cell surface protein; l 96.3 0.0061 2.1E-07 49.5 6.0 68 7-80 261-330 (394)
160 4gt6_A Cell surface protein; l 96.1 0.011 3.8E-07 47.9 6.3 46 29-79 260-306 (394)
161 2ra8_A Uncharacterized protein 96.0 0.0045 1.5E-07 50.4 3.7 104 10-116 192-318 (362)
162 4fs7_A Uncharacterized protein 94.1 0.059 2E-06 43.6 5.0 96 7-120 293-392 (394)
163 1pgv_A TMD-1, tropomodulin TMD 93.6 0.044 1.5E-06 40.8 3.0 81 8-92 38-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 92.8 0.11 3.6E-06 38.7 4.1 60 7-68 66-135 (197)
165 2lz0_A Uncharacterized protein 40.2 43 0.0015 21.4 4.3 44 22-68 7-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=4e-13 Score=108.38 Aligned_cols=117 Identities=24% Similarity=0.354 Sum_probs=80.7
Q ss_pred ccCccccCCCCCcEEeccCCCC-ccccccccC---------CCCCcEEEeeCCCCcccCcccccccCCccceeeccccCC
Q 036960 2 EILQDIGCLSLLKELNLCVNDF-QRLPASIGS---------LSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNT 71 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l-~~lp~~~~~---------l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~ 71 (176)
.+|+.++.+++|++|++++|++ ..+|..++. +++|++|++++|+++.+|..+. .+++|+.|++++ |.
T Consensus 141 ~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~-N~ 217 (328)
T 4fcg_A 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRN-SP 217 (328)
T ss_dssp CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGG--GCTTCCEEEEES-SC
T ss_pred cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhc--CCCCCCEEEccC-CC
Confidence 4677777778888888877644 347766543 7777777777777777777777 777777777777 77
Q ss_pred CCCCchhhhc--CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCccccc
Q 036960 72 LQSLPKLLLP--SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKLNKSG 122 (176)
Q Consensus 72 l~~lP~~l~~--~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l~~~~ 122 (176)
++.+|..+.. +| ++|+++++.....++... ...+++.+++++|..+...+
T Consensus 218 l~~l~~~l~~l~~L-~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 218 LSALGPAIHHLPKL-EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp CCCCCGGGGGCTTC-CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred CCcCchhhccCCCC-CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 7777766543 67 777777776666554433 34567777777776665544
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.41 E-value=8.5e-13 Score=106.47 Aligned_cols=114 Identities=26% Similarity=0.364 Sum_probs=71.4
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCC-CcccCccccccc---------CCccceeeccccCC
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENK-LDNLPITISIKQ---------ISPLRTLELRNCNT 71 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~-l~~lP~~~~~~~---------l~~L~~L~l~~cn~ 71 (176)
++|..++.+++|++|++++|.++.+|..++.+++|++|++++|+ +..+|..+. . +++|+.|++++ |.
T Consensus 118 ~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~--~~~~~~~~~~l~~L~~L~L~~-n~ 194 (328)
T 4fcg_A 118 ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA--STDASGEHQGLVNLQSLRLEW-TG 194 (328)
T ss_dssp CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSE--EEC-CCCEEESTTCCEEEEEE-EC
T ss_pred chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHh--hccchhhhccCCCCCEEECcC-CC
Confidence 35666677777777777777777777677777777777777654 336665544 3 67777777777 67
Q ss_pred CCCCchhhhc--CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCccc
Q 036960 72 LQSLPKLLLP--SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKLNK 120 (176)
Q Consensus 72 l~~lP~~l~~--~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l~~ 120 (176)
++.+|..+.. +| ++|+++++ .+..++... ....++.+++++|.....
T Consensus 195 l~~lp~~l~~l~~L-~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 195 IRSLPASIANLQNL-KSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp CCCCCGGGGGCTTC-CEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred cCcchHhhcCCCCC-CEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhh
Confidence 7777765543 66 67777655 344443322 345566666666655443
No 3
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=5.2e-12 Score=96.82 Aligned_cols=108 Identities=24% Similarity=0.208 Sum_probs=74.8
Q ss_pred CccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhc
Q 036960 4 LQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
|..+..+++|++|++++|.|+.+|. .+..+++|++|++++|+|+.+|.. +. .+++|+.|++++ |.++.+|..+..
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~l~~L~~L~Ls~-N~l~~lp~~~~~ 133 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD--RLVHLKELFMCC-NKLTELPRGIER 133 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCSCCTTGGG
T ss_pred HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC--cchhhCeEeccC-CcccccCccccc
Confidence 4556777778888888887777765 457777888888888887777654 56 777888888888 778777766653
Q ss_pred --CccceeeccCCcCCcccccc--cCCCCccEEEeeCCc
Q 036960 82 --SYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKCL 116 (176)
Q Consensus 82 --~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c~ 116 (176)
+| ++|+++++ .+..++.. .....++.+.+.+..
T Consensus 134 l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 134 LTHL-THLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTC-SEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCC-CEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 67 77777765 56665432 134566777776544
No 4
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=8.5e-12 Score=95.15 Aligned_cols=105 Identities=19% Similarity=0.273 Sum_probs=59.2
Q ss_pred cccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh---
Q 036960 6 DIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL--- 80 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~--- 80 (176)
.|..+++|++|++++|.|+.+ |..|..+++|++|++++|+|+.+|.. |. ++++|+.|++++ |.++.++....
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~-N~l~~~~~~~~~~l 127 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE--GLFSLQLLLLNA-NKINCLRVDAFQDL 127 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc--CCCCCCEEECCC-CCCCEeCHHHcCCC
Confidence 455566666666666666664 44566666666666666666666554 45 566666666666 66665543322
Q ss_pred cCccceeeccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960 81 PSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKC 115 (176)
Q Consensus 81 ~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c 115 (176)
.+| ++|+++++ .++.++.. .....++.+++.+.
T Consensus 128 ~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 128 HNL-NLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTC-CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCC-CEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 155 66666554 34444321 12345556655543
No 5
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.34 E-value=8.9e-12 Score=93.36 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=87.9
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
++|..+. ++|++|++++|.|+.+|..+..+++|++|++++|.|+.++. .|. ++++|+.|++++ |.++.+|....
T Consensus 24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~-N~l~~i~~~~f 98 (193)
T 2wfh_A 24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS--NMTQLLTLILSY-NRLRCIPPRTF 98 (193)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCBCCTTTT
T ss_pred cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHcc--CCCCCCEEECCC-CccCEeCHHHh
Confidence 4666553 58999999999999999999999999999999999998865 588 999999999999 99999886543
Q ss_pred c---CccceeeccCCcCCccccccc--CCCCccEEEeeCCc
Q 036960 81 P---SYPEKVDTFMLESLSKLFRII--TTRKLTYFIFTKCL 116 (176)
Q Consensus 81 ~---~L~~~L~l~~~~~L~~l~~~~--~~~~l~~l~~~~c~ 116 (176)
. +| ++|+++++ .+..++... ....++.+++.+..
T Consensus 99 ~~l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 99 DGLKSL-RLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTC-CEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCC-CEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 2 78 99999875 577775432 35678888876643
No 6
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=3.1e-12 Score=93.14 Aligned_cols=101 Identities=17% Similarity=0.228 Sum_probs=72.7
Q ss_pred CCCCCcEEeccCCCCc--cccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCC-Cchhhh--cCc
Q 036960 9 CLSLLKELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQS-LPKLLL--PSY 83 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~-lP~~l~--~~L 83 (176)
..++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+. .+++|+.|++++ |.++. +|..+. .+|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLP--KLPKLKKLELSE-NRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCC--CCSSCCEEEEES-CCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhc--cCCCCCEEECcC-CcCchHHHHHHhhCCCC
Confidence 3467888888888887 6877778888888888888888877 5677 788888888888 77776 664443 377
Q ss_pred cceeeccCCcCCccccc---ccCCCCccEEEeeCC
Q 036960 84 PEKVDTFMLESLSKLFR---IITTRKLTYFIFTKC 115 (176)
Q Consensus 84 ~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c 115 (176)
++|+++++ .+..++. ......++.++++++
T Consensus 98 -~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 98 -THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp -CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred -CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC
Confidence 88888776 5665532 224456777777766
No 7
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=2.4e-12 Score=91.90 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=80.5
Q ss_pred CCCCCcEEeccCCCCc--cccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCC-Cchhhh--cCc
Q 036960 9 CLSLLKELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQS-LPKLLL--PSY 83 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~-lP~~l~--~~L 83 (176)
..++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..+. .+++|+.|++++ |.++. +|..+. .+|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~--~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLP--KLNKLKKLELSD-NRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCC--CCTTCCEEECCS-SCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhh--cCCCCCEEECCC-CcccchHHHHhhhCCCC
Confidence 3467899999999998 6888889999999999999999887 6688 899999999999 88877 775543 378
Q ss_pred cceeeccCCcCCcccc---cccCCCCccEEEeeCCc
Q 036960 84 PEKVDTFMLESLSKLF---RIITTRKLTYFIFTKCL 116 (176)
Q Consensus 84 ~~~L~l~~~~~L~~l~---~~~~~~~l~~l~~~~c~ 116 (176)
++|+++++ .+..++ .......++.++++++.
T Consensus 91 -~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 91 -THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp -CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred -CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 89999876 466552 22345678888888773
No 8
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.31 E-value=1.5e-11 Score=97.54 Aligned_cols=108 Identities=24% Similarity=0.295 Sum_probs=61.6
Q ss_pred cCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
+|..+..+++|++|++++|+|+.+|. .+..+++|++|++++|+|+.+|.. +. .+++|+.|++++ |.++.+|..+.
T Consensus 92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~l~~~~~ 168 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT--PTPKLEKLSLAN-NNLTELPAGLL 168 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTT-SCCSCCCTTTT
T ss_pred CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc--cccCCCEEECCC-CcCCccCHHHh
Confidence 45555566666666666666666543 466666666666666666655543 45 566666666666 66666665443
Q ss_pred c---CccceeeccCCcCCccccccc-CCCCccEEEeeCC
Q 036960 81 P---SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKC 115 (176)
Q Consensus 81 ~---~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c 115 (176)
. +| ++|+++++ .++.+|... ....++.+.+.+.
T Consensus 169 ~~l~~L-~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 169 NGLENL-DTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTCTTC-CEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred cCcCCC-CEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence 2 55 66666554 455554333 2334556655543
No 9
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=4e-12 Score=112.77 Aligned_cols=115 Identities=23% Similarity=0.168 Sum_probs=91.8
Q ss_pred cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP- 81 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~- 81 (176)
.|+.+..++.|+.|+|++|.+..+|..+..+++|++|+|++|.|+.+|..++ ++++|+.|+|++ |.++.+|..+..
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~-N~l~~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIK--NLSNLRVLDLSH-NRLTSLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGG--GGTTCCEEECTT-SCCSSCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhh--CCCCCCEEeCcC-CcCCccChhhcCC
Confidence 3566788999999999999999999988899999999999999999999899 999999999999 999999987765
Q ss_pred -CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCccccc
Q 036960 82 -SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKLNKSG 122 (176)
Q Consensus 82 -~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l~~~~ 122 (176)
+| ++|+++++ .+..+|..+ ...+|+.|+++++.--...+
T Consensus 293 ~~L-~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 293 FQL-KYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp TTC-SEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCC-CEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 88 99999876 677776544 45678888888765433333
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.31 E-value=7.5e-12 Score=107.28 Aligned_cols=63 Identities=29% Similarity=0.363 Sum_probs=30.9
Q ss_pred CCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCch
Q 036960 12 LLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPK 77 (176)
Q Consensus 12 ~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~ 77 (176)
++++|+|++|+|+++|+ +|.++++|++|+|++|+|+.+|+ .|. ++++|++|++++ |+++.+|.
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~-N~l~~l~~ 117 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTG-NPIQSLAL 117 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTT-CCCCEECG
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccC-CcCCCCCH
Confidence 44555555555555443 44555555555555555554433 244 455555555555 45554443
No 11
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=9e-12 Score=93.32 Aligned_cols=86 Identities=20% Similarity=0.302 Sum_probs=74.1
Q ss_pred ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLL 79 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l 79 (176)
.+|..+..+++|++|++++|.|+.++. .|..+++|++|++++|+|+.+|. .|. ++++|+.|++++ |.++.+|...
T Consensus 45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~--~l~~L~~L~L~~-N~l~~~~~~~ 121 (193)
T 2wfh_A 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD--GLKSLRLLSLHG-NDISVVPEGA 121 (193)
T ss_dssp SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECCS-SCCCBCCTTT
T ss_pred hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC--CCCCCCEEECCC-CCCCeeChhh
Confidence 478889999999999999999999765 69999999999999999998865 588 999999999999 9999999764
Q ss_pred hc---CccceeeccC
Q 036960 80 LP---SYPEKVDTFM 91 (176)
Q Consensus 80 ~~---~L~~~L~l~~ 91 (176)
.. +| ++|++++
T Consensus 122 ~~~l~~L-~~L~L~~ 135 (193)
T 2wfh_A 122 FNDLSAL-SHLAIGA 135 (193)
T ss_dssp TTTCTTC-CEEECCS
T ss_pred hhcCccc-cEEEeCC
Confidence 43 45 5555544
No 12
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=2.1e-11 Score=92.91 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=87.2
Q ss_pred ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLL 79 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l 79 (176)
++|..+. ++|++|++++|.|+.+|. .+..+++|++|++++|+|+.+ |..|. ++++|+.|++++ |.++.+|..+
T Consensus 25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~-N~l~~l~~~~ 99 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ--GLRSLNSLVLYG-NKITELPKSL 99 (220)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT--TCSSCCEEECCS-SCCCCCCTTT
T ss_pred cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh--CCcCCCEEECCC-CcCCccCHhH
Confidence 4666654 689999999999999876 799999999999999999977 67799 999999999999 9999999876
Q ss_pred hc---CccceeeccCCcCCcccccc-c-CCCCccEEEeeCC
Q 036960 80 LP---SYPEKVDTFMLESLSKLFRI-I-TTRKLTYFIFTKC 115 (176)
Q Consensus 80 ~~---~L~~~L~l~~~~~L~~l~~~-~-~~~~l~~l~~~~c 115 (176)
+. +| ++|+++++ .+..++.. . ....++.++++++
T Consensus 100 f~~l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 100 FEGLFSL-QLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp TTTCTTC-CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCCCC-CEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC
Confidence 43 78 99999876 46655322 2 3457788877665
No 13
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.2e-11 Score=91.18 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=46.7
Q ss_pred cEEeccCCCCccccccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhh---cCccceeec
Q 036960 14 KELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLL---PSYPEKVDT 89 (176)
Q Consensus 14 ~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~---~~L~~~L~l 89 (176)
+.+++++|.++.+|..+. ++|++|++++|+|+.+ |..|. ++++|+.|++++ |.++.+|..++ .+| ++|++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L-~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNS-NKLTAIPTGVFDKLTQL-TQLDL 88 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTCTTC-CEEEC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCC-CCCCccChhHhCCcchh-hEEEC
Confidence 445555555555555443 4555555555555544 33355 555555555555 55555554332 144 55555
Q ss_pred cCCcCCcccccc--cCCCCccEEEeeCC
Q 036960 90 FMLESLSKLFRI--ITTRKLTYFIFTKC 115 (176)
Q Consensus 90 ~~~~~L~~l~~~--~~~~~l~~l~~~~c 115 (176)
+++ .+..++.. ....+++.+++.++
T Consensus 89 ~~N-~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 89 NDN-HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCC-ccceeCHHHhccccCCCEEEeCCC
Confidence 443 34444332 12344555555544
No 14
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.29 E-value=2.6e-11 Score=92.90 Aligned_cols=107 Identities=26% Similarity=0.350 Sum_probs=88.2
Q ss_pred ccCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLL 79 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l 79 (176)
++|..+. ++|++|++++|.|+++ |..+..+++|++|++++|+|+.+|.. +. .+++|+.|++++ |.++.+|...
T Consensus 33 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~--~l~~L~~L~Ls~-N~l~~l~~~~ 107 (229)
T 3e6j_A 33 SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD--SLTQLTVLDLGT-NQLTVLPSAV 107 (229)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTT
T ss_pred ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc--cCCCcCEEECCC-CcCCccChhH
Confidence 4666553 7899999999999996 66899999999999999999999865 68 999999999999 9999998765
Q ss_pred hc---CccceeeccCCcCCccccccc-CCCCccEEEeeCC
Q 036960 80 LP---SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKC 115 (176)
Q Consensus 80 ~~---~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c 115 (176)
.. +| ++|+++++ .+..+|... ....++.++++++
T Consensus 108 ~~~l~~L-~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 108 FDRLVHL-KELFMCCN-KLTELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp TTTCTTC-CEEECCSS-CCCSCCTTGGGCTTCSEEECCSS
T ss_pred hCcchhh-CeEeccCC-cccccCcccccCCCCCEEECCCC
Confidence 43 78 99999875 577775443 4567788877764
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.28 E-value=2.5e-11 Score=93.88 Aligned_cols=83 Identities=29% Similarity=0.399 Sum_probs=44.5
Q ss_pred cccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh---
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL--- 80 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~--- 80 (176)
.+.++++|++|++++|.+++++. .+..+++|++|++++|+++.+|.. +. .+++|+.|++++ |.++.+|....
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l 130 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD--HLTQLDKLYLGG-NQLKSLPSGVFDRL 130 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc--ccCCCCEEEcCC-CcCCCcChhHhccC
Confidence 35555666666666666655433 355555666666666655555432 44 555555555555 55555554332
Q ss_pred cCccceeeccCC
Q 036960 81 PSYPEKVDTFML 92 (176)
Q Consensus 81 ~~L~~~L~l~~~ 92 (176)
.+| ++|+++++
T Consensus 131 ~~L-~~L~Ls~N 141 (251)
T 3m19_A 131 TKL-KELRLNTN 141 (251)
T ss_dssp TTC-CEEECCSS
T ss_pred Ccc-cEEECcCC
Confidence 144 55555443
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.28 E-value=5.8e-12 Score=100.80 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=51.6
Q ss_pred cCccccCCCCCcEEeccC-CCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCC-CCchh
Q 036960 3 ILQDIGCLSLLKELNLCV-NDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQ-SLPKL 78 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~-n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~-~lP~~ 78 (176)
+|+.++.+++|++|++++ |.+.+ +|..++.+++|++|++++|.++ .+|..+. ++++|++|++++ |.++ .+|..
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~-N~l~~~~p~~ 144 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSY-NALSGTLPPS 144 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCS-SEEESCCCGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCC-CccCCcCChH
Confidence 556666666666666663 55553 5666666666666666666666 5565566 666666666666 5554 45544
Q ss_pred hhc--CccceeeccCC
Q 036960 79 LLP--SYPEKVDTFML 92 (176)
Q Consensus 79 l~~--~L~~~L~l~~~ 92 (176)
+.. +| ++|+++++
T Consensus 145 ~~~l~~L-~~L~L~~N 159 (313)
T 1ogq_A 145 ISSLPNL-VGITFDGN 159 (313)
T ss_dssp GGGCTTC-CEEECCSS
T ss_pred HhcCCCC-CeEECcCC
Confidence 433 55 56665544
No 17
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=1.6e-11 Score=90.07 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=53.0
Q ss_pred CcEEeccCCCCccccccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhhc---Cccceee
Q 036960 13 LKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLLP---SYPEKVD 88 (176)
Q Consensus 13 L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~---~L~~~L~ 88 (176)
.+.+++++|.++.+|..+. ++|++|++++|+|+.+ |..|. ++++|+.|++++ |.++.+|...+. +| ++|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L-~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDN-NQLTVLPAGVFDKLTQL-TQLS 84 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCS-SCCCCCCTTTTTTCTTC-CEEE
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhc--CcccCCEEECCC-CCcCccChhhccCCCCC-CEEE
Confidence 4556666666666665442 5566666666666655 33455 666666666666 666666654432 45 5666
Q ss_pred ccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960 89 TFMLESLSKLFRI--ITTRKLTYFIFTKC 115 (176)
Q Consensus 89 l~~~~~L~~l~~~--~~~~~l~~l~~~~c 115 (176)
++++ .++.++.. .....++.+++++.
T Consensus 85 L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 85 LNDN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 6544 45544332 12345566666554
No 18
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=5e-12 Score=112.13 Aligned_cols=88 Identities=25% Similarity=0.303 Sum_probs=77.3
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
.||..+..+++|++|+|++|.|+.+|..++.+++|++|+|++|.|+.+|..++ .+++|+.|+|++ |.++.+|..+..
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~L~~-N~l~~lp~~~~~ 314 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG--SCFQLKYFYFFD-NMVTTLPWEFGN 314 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG--GGTTCSEEECCS-SCCCCCCSSTTS
T ss_pred CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc--CCCCCCEEECCC-CCCCccChhhhc
Confidence 47888888999999999999999999889999999999999999999999898 999999999999 899999987664
Q ss_pred --CccceeeccCCc
Q 036960 82 --SYPEKVDTFMLE 93 (176)
Q Consensus 82 --~L~~~L~l~~~~ 93 (176)
+| ++|+++++.
T Consensus 315 l~~L-~~L~L~~N~ 327 (727)
T 4b8c_D 315 LCNL-QFLGVEGNP 327 (727)
T ss_dssp CTTC-CCEECTTSC
T ss_pred CCCc-cEEeCCCCc
Confidence 78 888887663
No 19
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.27 E-value=4.4e-11 Score=89.84 Aligned_cols=107 Identities=27% Similarity=0.348 Sum_probs=72.1
Q ss_pred ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh---c
Q 036960 7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL---P 81 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~---~ 81 (176)
+..+++|++|++++|+++.+|. .+..+++|++|++++|+++.+|.. +. .+++|+.|++++ |.++.+|.... .
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 124 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD--KLTQLKELALNT-NQLQSLPDGVFDKLT 124 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTCT
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhc--CccCCCEEEcCC-CcCcccCHhHhccCC
Confidence 5677777777777777777665 357777778888877777777654 56 777788888877 77777775432 2
Q ss_pred CccceeeccCCcCCcccccc--cCCCCccEEEeeCCcCc
Q 036960 82 SYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKCLKL 118 (176)
Q Consensus 82 ~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c~~l 118 (176)
+| ++|+++++ .+..++.. ....+++.+++.++.-.
T Consensus 125 ~L-~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 125 QL-KDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TC-CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cC-CEEECCCC-ccceeCHHHhccCCCccEEEecCCCee
Confidence 66 77777665 45555432 23456777777765433
No 20
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=1.6e-11 Score=106.14 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=72.9
Q ss_pred CCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cccceeec
Q 036960 12 LLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SYPEKVDT 89 (176)
Q Consensus 12 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L~~~L~l 89 (176)
.|+.|++++|.|+++|. ++.+++|+.|++++|+|+.+|..++ .+++|+.|++++ |.++.+| .+.. +| +.|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L-~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALA--ALRCLEVLQASD-NALENVD-GVANLPRL-QELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGG--GCTTCCEEECCS-SCCCCCG-GGTTCSSC-CEEEC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhh--cCCCCCEEECCC-CCCCCCc-ccCCCCCC-cEEEC
Confidence 47788888888888875 8888888888888888888888888 888888888888 8888887 5553 67 78888
Q ss_pred cCCcCCccc--cccc-CCCCccEEEeeCCc
Q 036960 90 FMLESLSKL--FRII-TTRKLTYFIFTKCL 116 (176)
Q Consensus 90 ~~~~~L~~l--~~~~-~~~~l~~l~~~~c~ 116 (176)
+++ .+..+ |... ...+++.++++++.
T Consensus 516 s~N-~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 516 CNN-RLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 765 45555 3333 45667777777653
No 21
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.26 E-value=4.8e-11 Score=92.31 Aligned_cols=110 Identities=23% Similarity=0.245 Sum_probs=90.4
Q ss_pred CccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh-
Q 036960 4 LQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL- 80 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~- 80 (176)
|..+..+++|++|++++|.++.+|. .+..+++|++|++++|+|+.+|.. +. .+++|+.|++++ |.++.+|....
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~~ 152 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD--RLTKLKELRLNT-NQLQSIPAGAFD 152 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTT
T ss_pred HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhc--cCCcccEEECcC-CcCCccCHHHcC
Confidence 4457899999999999999999775 679999999999999999998876 68 899999999999 99999997433
Q ss_pred --cCccceeeccCCcCCcccccc--cCCCCccEEEeeCCcCc
Q 036960 81 --PSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKCLKL 118 (176)
Q Consensus 81 --~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c~~l 118 (176)
.+| ++|+++++ .+..++.. .....++.+++.++.--
T Consensus 153 ~l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 153 KLTNL-QTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCTTC-CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcCC-CEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 378 99999876 56666442 23567888988876543
No 22
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=3.4e-11 Score=89.97 Aligned_cols=105 Identities=13% Similarity=0.191 Sum_probs=64.0
Q ss_pred cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcc-cCcccccccCCccceeeccccCCCCC-Cchhhhc--
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDN-LPITISIKQISPLRTLELRNCNTLQS-LPKLLLP-- 81 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-lP~~~~~~~l~~L~~L~l~~cn~l~~-lP~~l~~-- 81 (176)
.+..+++|++|++++|.++.++ .+..+++|++|++++|+++. .|..+. .+++|+.|++++ |.++. .|..+..
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~Ls~-n~i~~~~~~~l~~l~ 136 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLS--GLTSLTLLDISH-SAHDDSILTKINTLP 136 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCT--TCTTCCEEECCS-SBCBGGGHHHHTTCS
T ss_pred HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhc--CCCCCCEEEecC-CccCcHhHHHHhhCC
Confidence 4566666777777766665554 56666777777777777663 455666 677777777777 66653 3433432
Q ss_pred CccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 82 SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 82 ~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
+| ++|+++++..+..++.......++.+++++|
T Consensus 137 ~L-~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 137 KV-NSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169 (197)
T ss_dssp SC-CEEECCSCTBCCCCGGGGGCSSCCEEECTTB
T ss_pred CC-CEEEccCCCCccccHhhcCCCCCCEEECCCC
Confidence 56 6666666644555544444455666666554
No 23
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=1.9e-11 Score=98.57 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=73.1
Q ss_pred ccCccccCCCCCcEEeccC-CCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchh
Q 036960 2 EILQDIGCLSLLKELNLCV-NDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKL 78 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~-n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~ 78 (176)
.||. |..+++|++|+|++ |.|+.+|. .|+.+++|++|+|++|+|+.+|. .|. ++++|+.|+|++ |.|+.+|..
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~-N~l~~~~~~ 98 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH--FTPRLSRLNLSF-NALESLSWK 98 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG--SCSCCCEEECCS-SCCSCCCST
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc--CCcCCCEEeCCC-CccceeCHH
Confidence 4788 89999999999996 99999774 79999999999999999997765 578 999999999999 999999977
Q ss_pred hhc--CccceeeccCC
Q 036960 79 LLP--SYPEKVDTFML 92 (176)
Q Consensus 79 l~~--~L~~~L~l~~~ 92 (176)
++. .| +.|++.++
T Consensus 99 ~~~~~~L-~~l~l~~N 113 (347)
T 2ifg_A 99 TVQGLSL-QELVLSGN 113 (347)
T ss_dssp TTCSCCC-CEEECCSS
T ss_pred HcccCCc-eEEEeeCC
Confidence 664 46 77777544
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.25 E-value=3e-11 Score=103.58 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=86.5
Q ss_pred cC-ccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhh
Q 036960 3 IL-QDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLL 79 (176)
Q Consensus 3 lP-~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l 79 (176)
|| ..|.++++|++|+|++|+|+.+|+ .|.++++|++|+|++|+|+.+|.. |. ++++|++|++++ |+++.+|...
T Consensus 67 l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~--~L~~L~~L~Ls~-N~l~~l~~~~ 143 (635)
T 4g8a_A 67 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVE-TNLASLENFP 143 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT--TCTTCCEEECTT-SCCCCSTTCC
T ss_pred CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc--CCCCCCEEECCC-CcCCCCChhh
Confidence 44 468999999999999999999876 689999999999999999999864 78 999999999999 9999998653
Q ss_pred hc---CccceeeccCCcCCccc--ccc-cCCCCccEEEeeCC
Q 036960 80 LP---SYPEKVDTFMLESLSKL--FRI-ITTRKLTYFIFTKC 115 (176)
Q Consensus 80 ~~---~L~~~L~l~~~~~L~~l--~~~-~~~~~l~~l~~~~c 115 (176)
.. +| ++|+++++ .+..+ +.. .....++.++++++
T Consensus 144 ~~~L~~L-~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 144 IGHLKTL-KELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CTTCTTC-CEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hhcCccc-CeeccccC-ccccCCCchhhccchhhhhhcccCc
Confidence 32 78 89999876 34433 222 23466777777665
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.24 E-value=2e-11 Score=106.53 Aligned_cols=108 Identities=11% Similarity=0.122 Sum_probs=83.7
Q ss_pred cCccccCCCCCcEEeccCCCCcc------------------cccccc--CCCCCcEEEeeCCCCc-ccCcccccccCCcc
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQR------------------LPASIG--SLSSLKRMNLVENKLD-NLPITISIKQISPL 61 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~------------------lp~~~~--~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L 61 (176)
||+.++++++|++|++++|.+++ +|..++ .+++|++|++++|.+. .+|..++ ++++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK--ALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT--TCSSC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh--cCCCC
Confidence 78888889999999999999988 888888 8999999999999866 7888888 89999
Q ss_pred ceeeccccCC-CC--CCchhhh--------cCccceeeccCCcCCccccc---ccCCCCccEEEeeCC
Q 036960 62 RTLELRNCNT-LQ--SLPKLLL--------PSYPEKVDTFMLESLSKLFR---IITTRKLTYFIFTKC 115 (176)
Q Consensus 62 ~~L~l~~cn~-l~--~lP~~l~--------~~L~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c 115 (176)
++|++++ |. ++ .+|..+. .+| ++|+++++ .+..+|. .....+++.++++++
T Consensus 276 ~~L~Ls~-n~~l~~~~lp~~~~~L~~~~~l~~L-~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 276 QLINVAC-NRGISGEQLKDDWQALADAPVGEKI-QIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CEEECTT-CTTSCHHHHHHHHHHHHHSGGGGTC-CEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSC
T ss_pred CEEECcC-CCCCccccchHHHHhhhccccCCCC-CEEECCCC-cCCccCchhhhccCCCCCEEeCcCC
Confidence 9999998 76 76 4787654 477 88888766 4556655 223445666666554
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.24 E-value=1.7e-11 Score=98.08 Aligned_cols=111 Identities=16% Similarity=0.266 Sum_probs=91.6
Q ss_pred ccCccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCC-CCchh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQ-SLPKL 78 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~-~lP~~ 78 (176)
.+|..|+.+++|++|++++|.+++ +|..++.+++|++|++++|.++ .+|..+. .+++|++|++++ |.++ .+|..
T Consensus 92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~~-N~l~~~~p~~ 168 (313)
T 1ogq_A 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS--SLPNLVGITFDG-NRISGAIPDS 168 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--GCTTCCEEECCS-SCCEEECCGG
T ss_pred cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh--cCCCCCeEECcC-CcccCcCCHH
Confidence 478899999999999999999985 8889999999999999999999 7898999 999999999999 9986 88877
Q ss_pred hhc---CccceeeccCCcCCcccccccCCCCccEEEeeCCc
Q 036960 79 LLP---SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCL 116 (176)
Q Consensus 79 l~~---~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~ 116 (176)
+.. .| ++|+++++.--..++.......++.++++++.
T Consensus 169 l~~l~~~L-~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~ 208 (313)
T 1ogq_A 169 YGSFSKLF-TSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208 (313)
T ss_dssp GGCCCTTC-CEEECCSSEEEEECCGGGGGCCCSEEECCSSE
T ss_pred HhhhhhcC-cEEECcCCeeeccCChHHhCCcccEEECcCCc
Confidence 764 68 89999876422244444444458888877653
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.24 E-value=4.7e-11 Score=94.69 Aligned_cols=103 Identities=28% Similarity=0.420 Sum_probs=68.9
Q ss_pred cCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc---Cc
Q 036960 8 GCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP---SY 83 (176)
Q Consensus 8 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~---~L 83 (176)
+.+++|++|++++|.++.+|..+..+++|++|++++|+|+.+|. .|. ++++|+.|++++ |.++.+|..... +|
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR--GLGELQELYLKG-NELKTLPPGLLTPTPKL 150 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTT--TCTTCCEEECTT-SCCCCCCTTTTTTCTTC
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHc--CCCCCCEEECCC-CCCCccChhhcccccCC
Confidence 44566666666666666666667777777777777777777654 467 777777777777 777777765432 66
Q ss_pred cceeeccCCcCCccccccc--CCCCccEEEeeCC
Q 036960 84 PEKVDTFMLESLSKLFRII--TTRKLTYFIFTKC 115 (176)
Q Consensus 84 ~~~L~l~~~~~L~~l~~~~--~~~~l~~l~~~~c 115 (176)
+.|+++++ .++.++... ...+++.++++++
T Consensus 151 -~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 151 -EKLSLANN-NLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp -CEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -CEEECCCC-cCCccCHHHhcCcCCCCEEECCCC
Confidence 77777665 466664432 3456777776654
No 28
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=4e-11 Score=89.50 Aligned_cols=108 Identities=21% Similarity=0.318 Sum_probs=85.3
Q ss_pred ccCccccCCCCCcEEeccCCCCcccccc--ccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPAS--IGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKL 78 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~ 78 (176)
++|..+.. +|++|++++|.|+.++.. ++.+++|++|++++|+|+.+ |..+. ++++|+.|++++ |.++.++..
T Consensus 22 ~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~ 96 (192)
T 1w8a_A 22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE--GASHIQELQLGE-NKIKEISNK 96 (192)
T ss_dssp SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCS-CCCCEECSS
T ss_pred cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC--CcccCCEEECCC-CcCCccCHH
Confidence 46766543 899999999999998764 89999999999999999977 67799 999999999999 999888765
Q ss_pred hh---cCccceeeccCCcCCccc-cccc-CCCCccEEEeeCCc
Q 036960 79 LL---PSYPEKVDTFMLESLSKL-FRII-TTRKLTYFIFTKCL 116 (176)
Q Consensus 79 l~---~~L~~~L~l~~~~~L~~l-~~~~-~~~~l~~l~~~~c~ 116 (176)
.. .+| ++|+++++ .+..+ +... ....++.++++++.
T Consensus 97 ~~~~l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 97 MFLGLHQL-KTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SSTTCTTC-CEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred HhcCCCCC-CEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 33 378 89999876 45554 2222 34578888887654
No 29
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=9.6e-11 Score=85.91 Aligned_cols=110 Identities=24% Similarity=0.280 Sum_probs=88.8
Q ss_pred ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLL 79 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l 79 (176)
++|..+ .++|++|++++|+++++|. .++.+++|++|++++|+++.+|.. +. .+++|+.|++++ |.++.+|...
T Consensus 21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~-N~l~~~~~~~ 95 (177)
T 2o6r_A 21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD--KLTKLTILYLHE-NKLQSLPNGV 95 (177)
T ss_dssp SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTT
T ss_pred cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc--CCCccCEEECCC-CCccccCHHH
Confidence 355444 3689999999999999876 578999999999999999988765 68 999999999999 9999998764
Q ss_pred h---cCccceeeccCCcCCccccccc--CCCCccEEEeeCCcCc
Q 036960 80 L---PSYPEKVDTFMLESLSKLFRII--TTRKLTYFIFTKCLKL 118 (176)
Q Consensus 80 ~---~~L~~~L~l~~~~~L~~l~~~~--~~~~l~~l~~~~c~~l 118 (176)
. .+| ++|+++++ .+..++... ....++.+++.++.-.
T Consensus 96 ~~~l~~L-~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 96 FDKLTQL-KELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTCTTC-CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhCCccc-CEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 3 378 99999876 677775533 3567888988876543
No 30
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=6.9e-11 Score=90.07 Aligned_cols=104 Identities=17% Similarity=0.275 Sum_probs=68.9
Q ss_pred ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchh-hh--c
Q 036960 7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKL-LL--P 81 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~-l~--~ 81 (176)
|..+++|++|++++|.|+.++. .+..+++|++|++++|+|+.+|.. +. .+++|+.|++++ |.++.++.. +. .
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~~~l~ 129 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK--GLESLKTLMLRS-NRITCVGNDSFIGLS 129 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGT--TCSSCCEEECTT-SCCCCBCTTSSTTCT
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhc--CCcCCCEEECCC-CcCCeECHhHcCCCc
Confidence 5677777777777777777655 677777777777777777766554 66 777777777777 777766433 32 2
Q ss_pred CccceeeccCCcCCccc-cccc-CCCCccEEEeeCC
Q 036960 82 SYPEKVDTFMLESLSKL-FRII-TTRKLTYFIFTKC 115 (176)
Q Consensus 82 ~L~~~L~l~~~~~L~~l-~~~~-~~~~l~~l~~~~c 115 (176)
+| ++|+++++ .++.+ +... ....++.++++++
T Consensus 130 ~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 130 SV-RLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TC-SEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred cC-CEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence 66 77777664 45555 2222 3445666766654
No 31
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=5.8e-11 Score=88.72 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=88.4
Q ss_pred CccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCcc-cCcccccccCCccceeeccccCC-CCCCchhhh
Q 036960 4 LQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLDN-LPITISIKQISPLRTLELRNCNT-LQSLPKLLL 80 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~-lP~~~~~~~l~~L~~L~l~~cn~-l~~lP~~l~ 80 (176)
++.+..+++|++|++++|.++. .|..++.+++|++|++++|+++. .|..+. .+++|+.|++++ |. ++.+| .+.
T Consensus 81 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~-n~~i~~~~-~l~ 156 (197)
T 4ezg_A 81 YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN--TLPKVNSIDLSY-NGAITDIM-PLK 156 (197)
T ss_dssp CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHT--TCSSCCEEECCS-CTBCCCCG-GGG
T ss_pred chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHh--hCCCCCEEEccC-CCCccccH-hhc
Confidence 4578899999999999999998 78899999999999999999994 677789 999999999999 76 89998 454
Q ss_pred c--CccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 81 P--SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 81 ~--~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
. +| ++|+++++ .+..++......+++.+++++.
T Consensus 157 ~l~~L-~~L~l~~n-~i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 157 TLPEL-KSLNIQFD-GVHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GCSSC-CEEECTTB-CCCCCTTGGGCSSCCEEEECBC
T ss_pred CCCCC-CEEECCCC-CCcChHHhccCCCCCEEEeeCc
Confidence 3 78 99999876 4666654455667788877654
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.22 E-value=4.8e-11 Score=99.74 Aligned_cols=91 Identities=29% Similarity=0.408 Sum_probs=62.1
Q ss_pred CccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhhc
Q 036960 4 LQDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
|..|.++++|++|++++|.|+.++ ..+..+++|++|++++|+|+.+|.. +. .+++|+.|++++ |.++.+|.....
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~ 168 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE--YLSKLRELWLRN-NPIESIPSYAFN 168 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS--SCTTCCEEECCS-CCCCEECTTTTT
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc--ccCCCCEEECCC-CCcceeCHhHHh
Confidence 455677777777777777777754 4677777777777777777777654 66 777777777777 777776653332
Q ss_pred ---CccceeeccCCcCCccc
Q 036960 82 ---SYPEKVDTFMLESLSKL 98 (176)
Q Consensus 82 ---~L~~~L~l~~~~~L~~l 98 (176)
+| ++|+++++..+..+
T Consensus 169 ~l~~L-~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 169 RVPSL-MRLDLGELKKLEYI 187 (452)
T ss_dssp TCTTC-CEEECCCCTTCCEE
T ss_pred cCCcc-cEEeCCCCCCcccc
Confidence 55 66666665555544
No 33
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=3.1e-11 Score=88.65 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=75.2
Q ss_pred cccCCCCCcEEeccCCCCccccccccCCC-CCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh---c
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPASIGSLS-SLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL---P 81 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~---~ 81 (176)
.+..+.+|++|++++|.++.+|. +..+. +|++|++++|.|+.+ ..+. .+++|+.|++++ |.++.+|..+. +
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~--~l~~L~~L~Ls~-N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFP--LLRRLKTLLVNN-NRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCC--CCSSCCEEECCS-SCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccc--cCCCCCEEECCC-CcccccCcchhhcCC
Confidence 35567788888888888888764 44444 888888888888877 5677 888888888888 88888876542 3
Q ss_pred CccceeeccCCcCCccccc---ccCCCCccEEEeeCCc
Q 036960 82 SYPEKVDTFMLESLSKLFR---IITTRKLTYFIFTKCL 116 (176)
Q Consensus 82 ~L~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c~ 116 (176)
+| ++|+++++ .+..++. ......++.++++++.
T Consensus 89 ~L-~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 89 DL-TELILTNN-SLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp TC-CEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred CC-CEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence 77 88888765 4566644 2245567777777664
No 34
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.21 E-value=1.4e-11 Score=109.48 Aligned_cols=94 Identities=19% Similarity=0.283 Sum_probs=80.7
Q ss_pred cCccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCC-CCchhh
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQ-SLPKLL 79 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~-~lP~~l 79 (176)
+|..++.+++|++|++++|++++ +|.+++.+++|+.|++++|+++ .+|..++ ++++|+.|++++ |++. .+|..+
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~--~L~~L~~LdLs~-N~l~g~ip~~l 700 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG--DLRGLNILDLSS-NKLDGRIPQAM 700 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCS-SCCEECCCGGG
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh--CCCCCCEEECCC-CcccCcCChHH
Confidence 57778889999999999999997 8999999999999999999999 8999999 999999999999 8885 888777
Q ss_pred hc--CccceeeccCCcCCccccc
Q 036960 80 LP--SYPEKVDTFMLESLSKLFR 100 (176)
Q Consensus 80 ~~--~L~~~L~l~~~~~L~~l~~ 100 (176)
.. +| ++|+++++.--..+|.
T Consensus 701 ~~l~~L-~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 701 SALTML-TEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GGCCCC-SEEECCSSEEEEECCS
T ss_pred hCCCCC-CEEECcCCcccccCCC
Confidence 64 78 8899887643334443
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.21 E-value=5.7e-11 Score=99.28 Aligned_cols=108 Identities=17% Similarity=0.257 Sum_probs=78.7
Q ss_pred CccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc
Q 036960 4 LQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
|..|.++++|++|++++|.++.+|. .+..+++|++|++++|+|+.+|. .+. ++++|+.|++++|+.++.+|.....
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~~~~l~~i~~~~~~ 193 (452)
T 3zyi_A 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN--RVPSLMRLDLGELKKLEYISEGAFE 193 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT--TCTTCCEEECCCCTTCCEECTTTTT
T ss_pred hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHh--cCCcccEEeCCCCCCccccChhhcc
Confidence 4668889999999999999999876 48889999999999999998876 477 7888888888887777777754332
Q ss_pred ---CccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 82 ---SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 82 ---~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
+| ++|+++++ .+..++......+++.++++++
T Consensus 194 ~l~~L-~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 194 GLFNL-KYLNLGMC-NIKDMPNLTPLVGLEELEMSGN 228 (452)
T ss_dssp TCTTC-CEEECTTS-CCSSCCCCTTCTTCCEEECTTS
T ss_pred CCCCC-CEEECCCC-cccccccccccccccEEECcCC
Confidence 56 77777654 4555544444444555554443
No 36
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.21 E-value=1.2e-10 Score=91.03 Aligned_cols=68 Identities=38% Similarity=0.536 Sum_probs=32.4
Q ss_pred cccCCCCCcEEeccCCCCcccccc-ccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCc
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPAS-IGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLP 76 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP 76 (176)
.|..+++|++|++++|.++.+|.. +..+++|++|++++|+++.+|.. +. .+++|+.|++++ |.++.+|
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~ 125 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD--QLVNLAELRLDR-NQLKSLP 125 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT--TCSSCCEEECCS-SCCCCCC
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc--cccCCCEEECCC-CccCeeC
Confidence 344555555555555555554442 34455555555555555544432 33 444444444444 4444443
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.21 E-value=5.9e-10 Score=87.22 Aligned_cols=105 Identities=29% Similarity=0.395 Sum_probs=51.7
Q ss_pred ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh---c
Q 036960 7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL---P 81 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~---~ 81 (176)
+..+++|++|++++|.++++|. .++.+++|++|++++|+++.+|.. +. .+++|+.|++++ |.++.+|.... .
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~~~~~~~l~ 181 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD--KLTNLTELDLSY-NQLQSLPEGVFDKLT 181 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTCT
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc--cCccCCEEECCC-CCcCccCHHHhcCCc
Confidence 3445555555555555555443 245555555555555555544433 34 555555555555 55555554321 1
Q ss_pred CccceeeccCCcCCcccccc--cCCCCccEEEeeCCc
Q 036960 82 SYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKCL 116 (176)
Q Consensus 82 ~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c~ 116 (176)
+| ++|+++++ .+..++.. .....++.+++.++.
T Consensus 182 ~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 182 QL-KDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TC-CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cC-CEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC
Confidence 45 55555544 34333221 123455556555543
No 38
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.20 E-value=3.6e-11 Score=94.11 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=42.6
Q ss_pred ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccce
Q 036960 7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEK 86 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~~ 86 (176)
+..+++|++|++++|.++.+| .+..+++|++|++++|+|+.+|. +. .+++|+.|++++ |.++.+|.....+| ++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~--~l~~L~~L~L~~-N~l~~l~~~~~~~L-~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LK--DLTKLEELSVNR-NRLKNLNGIPSACL-SR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GT--TCSSCCEEECCS-SCCSCCTTCCCSSC-CE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hc--cCCCCCEEECCC-CccCCcCccccCcc-cE
Confidence 344555555555555555555 45555555555555555555544 55 555555555555 55555543222344 45
Q ss_pred eeccCC
Q 036960 87 VDTFML 92 (176)
Q Consensus 87 L~l~~~ 92 (176)
|+++++
T Consensus 111 L~L~~N 116 (263)
T 1xeu_A 111 LFLDNN 116 (263)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 554443
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.20 E-value=7e-11 Score=98.40 Aligned_cols=90 Identities=28% Similarity=0.450 Sum_probs=59.5
Q ss_pred ccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc-
Q 036960 5 QDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP- 81 (176)
Q Consensus 5 ~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~- 81 (176)
..|.++++|++|++++|.++.++ ..|..+++|++|++++|+|+.+|. .+. .+++|+.|++++ |.++.+|.....
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~-N~i~~~~~~~~~~ 158 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV--YLSKLKELWLRN-NPIESIPSYAFNR 158 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC--SCSSCCEEECCS-CCCCEECTTTTTT
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh--ccccCceeeCCC-CcccccCHHHhhh
Confidence 45667777777777777777754 467777777777777777777765 366 777777777777 777666653322
Q ss_pred --CccceeeccCCcCCccc
Q 036960 82 --SYPEKVDTFMLESLSKL 98 (176)
Q Consensus 82 --~L~~~L~l~~~~~L~~l 98 (176)
+| ++|+++++..+..+
T Consensus 159 l~~L-~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 159 IPSL-RRLDLGELKRLSYI 176 (440)
T ss_dssp CTTC-CEEECCCCTTCCEE
T ss_pred Cccc-CEeCCCCCCCccee
Confidence 55 66666554444444
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.20 E-value=7.3e-11 Score=98.32 Aligned_cols=107 Identities=21% Similarity=0.300 Sum_probs=76.0
Q ss_pred ccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc-
Q 036960 5 QDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP- 81 (176)
Q Consensus 5 ~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~- 81 (176)
..|.++++|++|++++|+++.+|. .+..+++|++|++++|+|+.+|. .+. ++++|+.|++++|+.++.+|.....
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~l~~~~~l~~i~~~~~~~ 183 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN--RIPSLRRLDLGELKRLSYISEGAFEG 183 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT--TCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhh--hCcccCEeCCCCCCCcceeCcchhhc
Confidence 567889999999999999998876 68889999999999999887765 466 7778888888776667766654332
Q ss_pred --CccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 82 --SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 82 --~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
+| ++|+++++ .++.+++.....+++.++++++
T Consensus 184 l~~L-~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 184 LSNL-RYLNLAMC-NLREIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp CSSC-CEEECTTS-CCSSCCCCTTCSSCCEEECTTS
T ss_pred cccc-CeecCCCC-cCccccccCCCcccCEEECCCC
Confidence 56 66776654 4555544444444555555443
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.19 E-value=1.5e-10 Score=90.67 Aligned_cols=105 Identities=30% Similarity=0.355 Sum_probs=64.9
Q ss_pred cccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh---
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL--- 80 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~--- 80 (176)
.+..+++|++|++++|.++++|. .++.+++|++|++++|+++.+|.. +. .+++|+.|++++ |.++.+|....
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~-n~l~~~~~~~~~~l 156 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD--KLTNLTYLNLAH-NQLQSLPKGVFDKL 156 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc--cCCCCCEEECCC-CccCccCHHHhccC
Confidence 45666667777777777666554 356677777777777777766544 56 677777777777 67766665432
Q ss_pred cCccceeeccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960 81 PSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKC 115 (176)
Q Consensus 81 ~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c 115 (176)
.+| ++|+++++ .+..++.. .....++.++++++
T Consensus 157 ~~L-~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 157 TNL-TELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp TTC-CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccC-CEEECCCC-CcCccCHHHhcCCccCCEEECCCC
Confidence 256 67777665 45554332 23456666666554
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.19 E-value=1.7e-10 Score=90.08 Aligned_cols=81 Identities=31% Similarity=0.401 Sum_probs=46.5
Q ss_pred cCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh---cC
Q 036960 8 GCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL---PS 82 (176)
Q Consensus 8 ~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~---~~ 82 (176)
..+++|++|++++|.++.+|. .+..+++|++|++++|+++.+|.. +. .+++|+.|++++ |.++.+|.... .+
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD--SLTKLTYLSLGY-NELQSLPKGVFDKLTS 158 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC--cCcCCCEEECCC-CcCCccCHhHccCCcc
Confidence 556666666666666666554 345666666666666666655433 45 566666666666 56655554322 14
Q ss_pred ccceeeccCC
Q 036960 83 YPEKVDTFML 92 (176)
Q Consensus 83 L~~~L~l~~~ 92 (176)
| ++|+++++
T Consensus 159 L-~~L~L~~n 167 (270)
T 2o6q_A 159 L-KELRLYNN 167 (270)
T ss_dssp C-CEEECCSS
T ss_pred c-ceeEecCC
Confidence 5 55555443
No 43
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=5e-11 Score=88.95 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=68.8
Q ss_pred ccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchh-hhc--
Q 036960 7 IGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKL-LLP-- 81 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~-l~~-- 81 (176)
++.+++|++|++++|.|+++ |..++.+++|++|++++|+|+.+|.. +. ++++|+.|++++ |.++.++.. +..
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL--GLHQLKTLNLYD-NQISCVMPGSFEHLN 126 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST--TCTTCCEEECCS-SCCCEECTTSSTTCT
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCC-CcCCeeCHHHhhcCC
Confidence 88999999999999999996 67899999999999999999987654 88 999999999999 999876433 322
Q ss_pred CccceeeccCC
Q 036960 82 SYPEKVDTFML 92 (176)
Q Consensus 82 ~L~~~L~l~~~ 92 (176)
+| ++|+++++
T Consensus 127 ~L-~~L~L~~N 136 (192)
T 1w8a_A 127 SL-TSLNLASN 136 (192)
T ss_dssp TC-CEEECTTC
T ss_pred CC-CEEEeCCC
Confidence 55 66666543
No 44
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.1e-10 Score=85.63 Aligned_cols=86 Identities=30% Similarity=0.432 Sum_probs=73.0
Q ss_pred cCc-cccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhh
Q 036960 3 ILQ-DIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLL 79 (176)
Q Consensus 3 lP~-~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l 79 (176)
+|+ .+..+++|++|++++|.++.+|. .++.+++|++|++++|+|+.+|.. +. .+++|+.|++++ |.++.+|..+
T Consensus 43 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~-N~l~~~~~~~ 119 (177)
T 2o6r_A 43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD--KLTQLKELALDT-NQLKSVPDGI 119 (177)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCSCCCTTT
T ss_pred eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhh--CCcccCEEECcC-CcceEeCHHH
Confidence 444 46889999999999999999876 479999999999999999988775 68 899999999999 9999999765
Q ss_pred hc---CccceeeccCC
Q 036960 80 LP---SYPEKVDTFML 92 (176)
Q Consensus 80 ~~---~L~~~L~l~~~ 92 (176)
.. +| ++|+++++
T Consensus 120 ~~~l~~L-~~L~l~~N 134 (177)
T 2o6r_A 120 FDRLTSL-QKIWLHTN 134 (177)
T ss_dssp TTTCTTC-CEEECCSS
T ss_pred hcCCccc-CEEEecCC
Confidence 43 56 67777655
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.18 E-value=1.3e-10 Score=92.96 Aligned_cols=106 Identities=17% Similarity=0.270 Sum_probs=77.9
Q ss_pred cCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhh
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
+|..+. +++++|++++|.++++|. .++.+++|++|++++|.++.+ |..+. ++++|++|++++ |.++.+|..++
T Consensus 46 lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~l~~l~~~~~ 120 (330)
T 1xku_A 46 VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA--PLVKLERLYLSK-NQLKELPEKMP 120 (330)
T ss_dssp CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCS-SCCSBCCSSCC
T ss_pred cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc--CCCCCCEEECCC-CcCCccChhhc
Confidence 555443 578889999999988766 688899999999999998876 67788 899999999999 88888888777
Q ss_pred cCccceeeccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960 81 PSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKC 115 (176)
Q Consensus 81 ~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c 115 (176)
.+| ++|+++++ .+..++.. .....++.++++++
T Consensus 121 ~~L-~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 121 KTL-QELRVHEN-EITKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp TTC-CEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS
T ss_pred ccc-cEEECCCC-cccccCHhHhcCCccccEEECCCC
Confidence 788 88888765 34444221 12344555555443
No 46
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.17 E-value=5.9e-11 Score=90.99 Aligned_cols=105 Identities=14% Similarity=0.175 Sum_probs=60.3
Q ss_pred cccCCCCCcEEeccCCC-Cccccc-cccCCCCCcEEEeeC-CCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc
Q 036960 6 DIGCLSLLKELNLCVND-FQRLPA-SIGSLSSLKRMNLVE-NKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~-l~~lp~-~~~~l~~L~~L~l~~-n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
.+.++++|++|++++|. ++.+|. .+..+++|++|++++ |+++.+|. .|. ++++|+.|++++ |.++.+|. +..
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~--~l~~L~~L~l~~-n~l~~lp~-~~~ 125 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK--ELPLLKFLGIFN-TGLKMFPD-LTK 125 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE--CCTTCCEEEEEE-ECCCSCCC-CTT
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC--CCCCCCEEeCCC-CCCccccc-ccc
Confidence 45666667777776664 666554 566666677777766 66666653 356 666666666666 66666664 222
Q ss_pred --Cccc---eeeccCCcCCcccccc--cCCCCcc-EEEeeCC
Q 036960 82 --SYPE---KVDTFMLESLSKLFRI--ITTRKLT-YFIFTKC 115 (176)
Q Consensus 82 --~L~~---~L~l~~~~~L~~l~~~--~~~~~l~-~l~~~~c 115 (176)
+| + +|+++++..++.++.. .....++ .++++++
T Consensus 126 l~~L-~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 126 VYST-DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp CCBC-CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred cccc-ccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 34 4 5666555445544332 1233455 5555443
No 47
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.17 E-value=1.3e-10 Score=94.58 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=65.4
Q ss_pred CCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc---Cc
Q 036960 9 CLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP---SY 83 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~---~L 83 (176)
.+++|++|+|++|+|+.++. .|..+++|++|++++|+|+.+|. .|. ++++|+.|++++ |.+..++..... +|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS--DLQALEVLLLYN-NHIVVVDRNAFEDMAQL 138 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCS-SCCCEECTTTTTTCTTC
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhC--CCcCCCEEECCC-CcccEECHHHhCCcccC
Confidence 67777777777777777654 57777777777777777776654 366 777777777777 777666433222 56
Q ss_pred cceeeccCCcCCccccccc-----CCCCccEEEeeCC
Q 036960 84 PEKVDTFMLESLSKLFRII-----TTRKLTYFIFTKC 115 (176)
Q Consensus 84 ~~~L~l~~~~~L~~l~~~~-----~~~~l~~l~~~~c 115 (176)
++|+++++ .+..++... ....++.++++++
T Consensus 139 -~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 139 -QKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp -CEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred -CEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 77777654 455554432 2456666666654
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.17 E-value=1.5e-10 Score=92.88 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=81.2
Q ss_pred ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLL 79 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l 79 (176)
++|..+ .++|++|++++|.+++++. .+..+++|++|++++|+++.+ |..+. ++++|++|++++ |.++.+|..+
T Consensus 47 ~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~-n~l~~l~~~~ 121 (332)
T 2ft3_A 47 AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS--PLRKLQKLYISK-NHLVEIPPNL 121 (332)
T ss_dssp SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST--TCTTCCEEECCS-SCCCSCCSSC
T ss_pred ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh--CcCCCCEEECCC-CcCCccCccc
Confidence 356555 3578899999999888654 788999999999999998876 66688 899999999999 8898888877
Q ss_pred hcCccceeeccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960 80 LPSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKC 115 (176)
Q Consensus 80 ~~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c 115 (176)
+.+| ++|+++++ .+..++.. ....+++.++++++
T Consensus 122 ~~~L-~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 122 PSSL-VELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp CTTC-CEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC
T ss_pred cccC-CEEECCCC-ccCccCHhHhCCCccCCEEECCCC
Confidence 7788 88888765 45555432 23456666666554
No 49
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=1e-12 Score=98.39 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=89.9
Q ss_pred cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP- 81 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~- 81 (176)
+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+. .+++|+.|++++ |.++.+| .+..
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~--~~~~L~~L~L~~-N~l~~l~-~~~~l 114 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDA--VADTLEELWISY-NQIASLS-GIEKL 114 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHH--HHHHCSEEEEEE-EECCCHH-HHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhh--cCCcCCEEECcC-CcCCcCC-ccccC
Confidence 4458899999999999999999999 89999999999999999999998888 889999999999 9999988 4543
Q ss_pred -CccceeeccCCcCCccccc---ccCCCCccEEEeeCCc
Q 036960 82 -SYPEKVDTFMLESLSKLFR---IITTRKLTYFIFTKCL 116 (176)
Q Consensus 82 -~L~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c~ 116 (176)
+| ++|+++++ .+..++. .....+++.+++.++.
T Consensus 115 ~~L-~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 115 VNL-RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHS-SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCC-CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 78 99999876 4665533 3355678888888764
No 50
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.17 E-value=2.8e-10 Score=85.41 Aligned_cols=106 Identities=25% Similarity=0.305 Sum_probs=86.2
Q ss_pred cCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
+|..+ .++|++|++++|.++.+|. .++.+++|++|++++|+++.+|.. +. .+++|++|++++ |.++.+|....
T Consensus 22 ~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~l~~~~~~~~ 96 (208)
T 2o6s_A 22 VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN--KLTSLTYLNLST-NQLQSLPNGVF 96 (208)
T ss_dssp CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTT
T ss_pred CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC--CCCCcCEEECCC-CcCCccCHhHh
Confidence 55444 4689999999999999876 478999999999999999988765 68 899999999999 99999987643
Q ss_pred ---cCccceeeccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960 81 ---PSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKC 115 (176)
Q Consensus 81 ---~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c 115 (176)
.+| ++|+++++ .+..++.. ....+++.++++++
T Consensus 97 ~~l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 97 DKLTQL-KELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp TTCTTC-CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCccCC-CEEEcCCC-cCcccCHhHhccCCcCCEEECCCC
Confidence 278 99999876 56666543 24567888888775
No 51
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.17 E-value=6.6e-11 Score=90.73 Aligned_cols=113 Identities=14% Similarity=0.203 Sum_probs=87.3
Q ss_pred cCc-cccCCCCCcEEeccC-CCCccccc-cccCCCCCcEEEeeCCCCcccCcccccccCCccc---eeeccccC-CCCCC
Q 036960 3 ILQ-DIGCLSLLKELNLCV-NDFQRLPA-SIGSLSSLKRMNLVENKLDNLPITISIKQISPLR---TLELRNCN-TLQSL 75 (176)
Q Consensus 3 lP~-~l~~l~~L~~L~L~~-n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~---~L~l~~cn-~l~~l 75 (176)
+|+ .|.++++|++|++++ |.++.+|. .+..+++|++|++++|+++.+|. +. .+++|+ .|++++ | .++.+
T Consensus 71 i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~--~l~~L~~L~~L~l~~-N~~l~~i 146 (239)
T 2xwt_C 71 LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LT--KVYSTDIFFILEITD-NPYMTSI 146 (239)
T ss_dssp ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CT--TCCBCCSEEEEEEES-CTTCCEE
T ss_pred eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cc--cccccccccEEECCC-Ccchhhc
Confidence 444 678899999999998 89999775 68899999999999999999987 77 888888 999999 7 88888
Q ss_pred chhhhc---Cccc-eeeccCCcCCccccccc-CCCCccEEEeeCCcCcccc
Q 036960 76 PKLLLP---SYPE-KVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKLNKS 121 (176)
Q Consensus 76 P~~l~~---~L~~-~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l~~~ 121 (176)
|..... +| + +|+++++ .++.++... ...+++.++++++..+...
T Consensus 147 ~~~~~~~l~~L-~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 147 PVNAFQGLCNE-TLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp CTTTTTTTBSS-EEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEE
T ss_pred Ccccccchhcc-eeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccC
Confidence 865433 67 7 8888765 466665433 2346788888877555543
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=6.6e-11 Score=106.90 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=78.6
Q ss_pred cCccccCCCCCcEEeccCCCCcc------------------cccccc--CCCCCcEEEeeCCCCc-ccCcccccccCCcc
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQR------------------LPASIG--SLSSLKRMNLVENKLD-NLPITISIKQISPL 61 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~------------------lp~~~~--~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L 61 (176)
||+.|+++++|++|+|++|.|++ +|..++ .+++|++|++++|.+. .+|..++ ++++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~--~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY--DLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG--GCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh--CCCCC
Confidence 78888888888888888888888 888877 8888888888888855 7788888 88888
Q ss_pred ceeeccccCC-CCC--Cchhhhc---------CccceeeccCCcCCccccc---ccCCCCccEEEeeCC
Q 036960 62 RTLELRNCNT-LQS--LPKLLLP---------SYPEKVDTFMLESLSKLFR---IITTRKLTYFIFTKC 115 (176)
Q Consensus 62 ~~L~l~~cn~-l~~--lP~~l~~---------~L~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c 115 (176)
+.|++++ |. ++. +|..+.. +| ++|+++++ .+..+|. .....+++.++++++
T Consensus 518 ~~L~Ls~-N~~lsg~~iP~~i~~L~~~~~~l~~L-~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 518 QSLNIAC-NRGISAAQLKADWTRLADDEDTGPKI-QIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp CEEECTT-CTTSCHHHHHHHHHHHHHCTTTTTTC-CEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTS
T ss_pred CEEECcC-CCCcccccchHHHHhhhhcccccCCc-cEEEeeCC-cCCccCChhhhhcCCCCCEEECCCC
Confidence 8888888 76 653 7765542 56 77777665 3445554 223445555555443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.16 E-value=7.5e-11 Score=95.36 Aligned_cols=89 Identities=26% Similarity=0.351 Sum_probs=52.3
Q ss_pred cccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCch--hhh-
Q 036960 6 DIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPK--LLL- 80 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~--~l~- 80 (176)
.+.++++|++|++++|.+++++ ..++.+++|++|++++|+++.+|.. +. ++++|++|++++ |.++.+|. .+.
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~-n~l~~l~~~~~~~~ 147 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK--PLSSLTFLNLLG-NPYKTLGETSLFSH 147 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT--TCTTCSEEECTT-CCCSSSCSSCSCTT
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC--CCccCCEEECCC-CCCcccCchhhhcc
Confidence 4556666666666666666643 3466666666666666666666554 55 666666666666 66666664 122
Q ss_pred -cCccceeeccCCcCCccc
Q 036960 81 -PSYPEKVDTFMLESLSKL 98 (176)
Q Consensus 81 -~~L~~~L~l~~~~~L~~l 98 (176)
.+| ++|+++++..+..+
T Consensus 148 l~~L-~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 148 LTKL-QILRVGNMDTFTKI 165 (353)
T ss_dssp CTTC-CEEEEEESSSCCEE
T ss_pred CCCC-cEEECCCCcccccc
Confidence 155 66666555434433
No 54
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.16 E-value=1.1e-10 Score=88.94 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=70.2
Q ss_pred ccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchh-hhc
Q 036960 5 QDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKL-LLP 81 (176)
Q Consensus 5 ~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~-l~~ 81 (176)
..|.++++|++|++++|.++.+|. .+..+++|++|++++|+|+.+ |..+. .+++|+.|++++ |.++.++.. +..
T Consensus 75 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~ 151 (220)
T 2v70_A 75 GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI--GLSSVRLLSLYD-NQITTVAPGAFDT 151 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST--TCTTCSEEECTT-SCCCCBCTTTTTT
T ss_pred HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC--CCccCCEEECCC-CcCCEECHHHhcC
Confidence 468999999999999999999766 589999999999999999977 66788 999999999999 999888533 332
Q ss_pred --CccceeeccCC
Q 036960 82 --SYPEKVDTFML 92 (176)
Q Consensus 82 --~L~~~L~l~~~ 92 (176)
+| ++|+++++
T Consensus 152 l~~L-~~L~L~~N 163 (220)
T 2v70_A 152 LHSL-STLNLLAN 163 (220)
T ss_dssp CTTC-CEEECCSC
T ss_pred CCCC-CEEEecCc
Confidence 55 56666543
No 55
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.16 E-value=1.8e-10 Score=94.21 Aligned_cols=105 Identities=19% Similarity=0.216 Sum_probs=81.8
Q ss_pred ccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--
Q 036960 5 QDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP-- 81 (176)
Q Consensus 5 ~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-- 81 (176)
+.+..+++|++|++++|.++++ |..+..+++|++|++++|+++.+|..+. .+++|+.|++++ |.++.+|..+..
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~l~~L~~L~L~~-n~l~~~~~~~~~l~ 318 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ--PIPTLKVLDLSH-NHLLHVERNQPQFD 318 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSS--CCTTCCEEECCS-SCCCCCGGGHHHHT
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccC--CCCCCCEEECCC-CcceecCccccccC
Confidence 3567788888999999888884 6688888899999999999888887777 888999999999 888888876653
Q ss_pred CccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 82 SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 82 ~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
+| ++|+++++ .+..++ ......++.++++++
T Consensus 319 ~L-~~L~L~~N-~i~~~~-~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 319 RL-ENLYLDHN-SIVTLK-LSTHHTLKNLTLSHN 349 (390)
T ss_dssp TC-SEEECCSS-CCCCCC-CCTTCCCSEEECCSS
T ss_pred cC-CEEECCCC-ccceeC-chhhccCCEEEcCCC
Confidence 78 88888776 465552 344556777777665
No 56
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=1.5e-10 Score=84.88 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=81.8
Q ss_pred ccCCC-CCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCccc-ccccCCccceeeccccCCCCCCch--hhhc-
Q 036960 7 IGCLS-LLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITI-SIKQISPLRTLELRNCNTLQSLPK--LLLP- 81 (176)
Q Consensus 7 l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~-~~~~l~~L~~L~l~~cn~l~~lP~--~l~~- 81 (176)
+..+. +|++|++++|.++++ ..++.+++|++|++++|+|+.+|..+ . .+++|+.|++++ |.++.+|. .+..
T Consensus 37 ~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~-N~i~~~~~~~~l~~l 112 (176)
T 1a9n_A 37 LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTN-NSLVELGDLDPLASL 112 (176)
T ss_dssp GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH--HCTTCCEEECCS-CCCCCGGGGGGGGGC
T ss_pred hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhh--cCCCCCEEECCC-CcCCcchhhHhhhcC
Confidence 44444 999999999999998 68999999999999999999998764 8 999999999999 99999996 4443
Q ss_pred -CccceeeccCCcCCcccccc-----cCCCCccEEEeeCC
Q 036960 82 -SYPEKVDTFMLESLSKLFRI-----ITTRKLTYFIFTKC 115 (176)
Q Consensus 82 -~L~~~L~l~~~~~L~~l~~~-----~~~~~l~~l~~~~c 115 (176)
+| ++|+++++ .+..++.. .....++.+++..+
T Consensus 113 ~~L-~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 113 KSL-TYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTC-CEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCC-CEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 78 89999876 35555442 23455666666544
No 57
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=2.8e-10 Score=82.63 Aligned_cols=110 Identities=21% Similarity=0.240 Sum_probs=90.7
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcc-cCcccccccCCccceeeccccCCCCCCc--hh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDN-LPITISIKQISPLRTLELRNCNTLQSLP--KL 78 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-lP~~~~~~~l~~L~~L~l~~cn~l~~lP--~~ 78 (176)
.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|+++. +|..+. .+++|+.|++++ |.++.+| ..
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~ 115 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAE--KLPNLTHLNLSG-NKLKDISTLEP 115 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH--HCTTCCEEECBS-SSCCSSGGGGG
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHh--hCCCCCEEeccC-CccCcchhHHH
Confidence 4788888999999999999999999 789999999999999999997 777777 899999999999 9999987 34
Q ss_pred hhc--CccceeeccCCcCCccccc-----ccCCCCccEEEeeCCcC
Q 036960 79 LLP--SYPEKVDTFMLESLSKLFR-----IITTRKLTYFIFTKCLK 117 (176)
Q Consensus 79 l~~--~L~~~L~l~~~~~L~~l~~-----~~~~~~l~~l~~~~c~~ 117 (176)
+.. +| ++|+++++ .+..++. ......++.+++.+|..
T Consensus 116 l~~l~~L-~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 116 LKKLECL-KSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp GSSCSCC-CEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HhcCCCC-CEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 443 78 99999887 4665544 22456788888777654
No 58
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.15 E-value=3.1e-10 Score=88.74 Aligned_cols=100 Identities=25% Similarity=0.288 Sum_probs=59.5
Q ss_pred cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY 83 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L 83 (176)
.+..+++|++|++++|.++++|. +..+++|++|++++|+++.+|. +. . ++|+.|++++ |.++.+| .+.. +|
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~-~~--~-~~L~~L~L~~-N~l~~~~-~l~~l~~L 130 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG-IP--S-ACLSRLFLDN-NELRDTD-SLIHLKNL 130 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTT-CC--C-SSCCEEECCS-SCCSBSG-GGTTCTTC
T ss_pred HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCc-cc--c-CcccEEEccC-CccCCCh-hhcCcccc
Confidence 56677778888888887777765 7777777777777777776653 33 3 5566666666 5555554 2322 45
Q ss_pred cceeeccCCcCCcccccccCCCCccEEEeeC
Q 036960 84 PEKVDTFMLESLSKLFRIITTRKLTYFIFTK 114 (176)
Q Consensus 84 ~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~ 114 (176)
+.|+++++ .++.++.......++.+++++
T Consensus 131 -~~L~Ls~N-~i~~~~~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 131 -EILSIRNN-KLKSIVMLGFLSKLEVLDLHG 159 (263)
T ss_dssp -CEEECTTS-CCCBCGGGGGCTTCCEEECTT
T ss_pred -cEEECCCC-cCCCChHHccCCCCCEEECCC
Confidence 55555543 344443333334444444443
No 59
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.15 E-value=4e-11 Score=95.49 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=70.5
Q ss_pred CccccCCCCCcEEeccCCCCcc---ccc--cccCCCCCcEEEeeCCCCcccCcc----cccccCCccceeeccccCCCCC
Q 036960 4 LQDIGCLSLLKELNLCVNDFQR---LPA--SIGSLSSLKRMNLVENKLDNLPIT----ISIKQISPLRTLELRNCNTLQS 74 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~---lp~--~~~~l~~L~~L~l~~n~l~~lP~~----~~~~~l~~L~~L~l~~cn~l~~ 74 (176)
|..++.+++|++|++++|++.+ ++. .++.+++|++|++++|+++.+|.. +. .+++|++|++++ |.++.
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~--~l~~L~~L~Ls~-N~l~~ 238 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA--AGVQPHSLDLSH-NSLRA 238 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH--HTCCCSSEECTT-SCCCC
T ss_pred HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh--cCCCCCEEECCC-CCCCc
Confidence 4567788888888888887654 332 346777888888888887766542 45 667788888888 77766
Q ss_pred C-chhhh-----cCccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 75 L-PKLLL-----PSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 75 l-P~~l~-----~~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
+ |..+. ++| ++|+++++ .++.+|.... .+++.++++++
T Consensus 239 ~~p~~~~~~~~~~~L-~~L~Ls~N-~l~~lp~~~~-~~L~~L~Ls~N 282 (310)
T 4glp_A 239 TVNPSAPRCMWSSAL-NSLNLSFA-GLEQVPKGLP-AKLRVLDLSSN 282 (310)
T ss_dssp CCCSCCSSCCCCTTC-CCEECCSS-CCCSCCSCCC-SCCSCEECCSC
T ss_pred cchhhHHhccCcCcC-CEEECCCC-CCCchhhhhc-CCCCEEECCCC
Confidence 5 54433 266 77777665 4666654433 56677776654
No 60
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=1.9e-10 Score=81.96 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=79.5
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcc-cCcccccccCCccceeeccccCCCCCCc--hh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDN-LPITISIKQISPLRTLELRNCNTLQSLP--KL 78 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-lP~~~~~~~l~~L~~L~l~~cn~l~~lP--~~ 78 (176)
.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+. .+++|+.|++++ |.++.+| ..
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~ls~-N~i~~~~~~~~ 108 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE--KCPNLTHLNLSG-NKIKDLSTIEP 108 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH--HCTTCCEEECTT-SCCCSHHHHGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh--hCCCCCEEECCC-CcCCChHHHHH
Confidence 4788889999999999999999999 789999999999999999997 777777 899999999999 9999876 44
Q ss_pred hhc--CccceeeccCCcCCccccc
Q 036960 79 LLP--SYPEKVDTFMLESLSKLFR 100 (176)
Q Consensus 79 l~~--~L~~~L~l~~~~~L~~l~~ 100 (176)
+.. +| ++|+++++ .+..++.
T Consensus 109 ~~~l~~L-~~L~l~~N-~l~~~~~ 130 (149)
T 2je0_A 109 LKKLENL-KSLDLFNC-EVTNLND 130 (149)
T ss_dssp GGGCTTC-CEEECTTC-GGGGSTT
T ss_pred HhhCCCC-CEEeCcCC-cccchHH
Confidence 443 78 89999887 4655543
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.15 E-value=3.1e-10 Score=90.57 Aligned_cols=65 Identities=23% Similarity=0.422 Sum_probs=30.8
Q ss_pred ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCc
Q 036960 7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLP 76 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP 76 (176)
+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .+. .+++|+.|++++ |.++.+|
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~--~l~~L~~L~l~~-n~l~~~~ 123 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIA--GLQSIKTLDLTS-TQITDVT 123 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGT--TCTTCCEEECTT-SCCCCCG
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhc--CCCCCCEEECCC-CCCCCch
Confidence 4445555555555555555443 444555555555555444443 233 444444444444 4444443
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.15 E-value=2.9e-10 Score=90.72 Aligned_cols=104 Identities=20% Similarity=0.289 Sum_probs=83.7
Q ss_pred cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP- 81 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~- 81 (176)
+|+ +..+++|++|++++|.++.+| .+..+++|++|++++|+++.+|. +. .+++|+.|++++ |.++.+|. +..
T Consensus 78 ~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~-n~l~~~~~-l~~l 150 (308)
T 1h6u_A 78 LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LA--GLSNLQVLYLDL-NQITNISP-LAGL 150 (308)
T ss_dssp CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GT--TCTTCCEEECCS-SCCCCCGG-GGGC
T ss_pred Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hc--CCCCCCEEECCC-CccCcCcc-ccCC
Confidence 455 788899999999999998886 68889999999999999998875 77 899999999999 89988884 443
Q ss_pred -CccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 82 -SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 82 -~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
+| ++|+++++ .+..++......+++.++++++
T Consensus 151 ~~L-~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 151 TNL-QYLSIGNA-QVSDLTPLANLSKLTTLKADDN 183 (308)
T ss_dssp TTC-CEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred CCc-cEEEccCC-cCCCChhhcCCCCCCEEECCCC
Confidence 78 88998876 5666655445667788877765
No 63
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.15 E-value=3.1e-10 Score=91.11 Aligned_cols=103 Identities=21% Similarity=0.329 Sum_probs=76.7
Q ss_pred cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY 83 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L 83 (176)
.+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+. .+++|++|++++ |.++.+|. +.. +|
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~--~l~~L~~L~l~~-n~i~~~~~-~~~l~~L 134 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQ--NLTNLRELYLNE-DNISDISP-LANLTKM 134 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT--TCTTCSEEECTT-SCCCCCGG-GTTCTTC
T ss_pred hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHc--CCCcCCEEECcC-CcccCchh-hccCCce
Confidence 36778888888888888888776 888888888888888888775 477 888888888888 88888774 332 67
Q ss_pred cceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 84 PEKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 84 ~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
++|+++++..+..++.......++.+.+++|
T Consensus 135 -~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 135 -YSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165 (347)
T ss_dssp -CEEECTTCTTCCCCGGGTTCTTCCEEECCSS
T ss_pred -eEEECCCCCCcccccchhhCCCCcEEEecCC
Confidence 7888877766665544444555666665554
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.14 E-value=2.9e-10 Score=89.18 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=15.9
Q ss_pred ccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCC
Q 036960 7 IGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVEN 44 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n 44 (176)
+..+++|++|++++|.++++ |..++.+++|++|++++|
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 33444444444444444442 233444444444444444
No 65
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.14 E-value=3.1e-10 Score=89.92 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=44.9
Q ss_pred ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Ccc
Q 036960 7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SYP 84 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L~ 84 (176)
+..+++|++|++++|.+++++. +..+++|++|++++|.++.+|. +. .+++|+.|++++ |.++.++ .+.. +|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~-n~i~~~~-~l~~l~~L- 136 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LK--DLKKLKSLSLEH-NGISDIN-GLVHLPQL- 136 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GT--TCTTCCEEECTT-SCCCCCG-GGGGCTTC-
T ss_pred HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hc--cCCCCCEEECCC-CcCCCCh-hhcCCCCC-
Confidence 4556666666666666666554 6666666666666666665543 55 556666666666 5555554 2222 45
Q ss_pred ceeeccCC
Q 036960 85 EKVDTFML 92 (176)
Q Consensus 85 ~~L~l~~~ 92 (176)
++|+++++
T Consensus 137 ~~L~l~~n 144 (291)
T 1h6t_A 137 ESLYLGNN 144 (291)
T ss_dssp CEEECCSS
T ss_pred CEEEccCC
Confidence 55555443
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.14 E-value=3.7e-10 Score=88.60 Aligned_cols=107 Identities=22% Similarity=0.296 Sum_probs=70.5
Q ss_pred CccccCCCCCcEEeccCCC-Cccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhh
Q 036960 4 LQDIGCLSLLKELNLCVND-FQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~-l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
|..+..+++|++|++++|. ++.+ |..+..+++|++|++++|.++.+ |..+. ++++|+.|++++ |.++.+|....
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~~~~~ 149 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR--GLAALQYLYLQD-NALQALPDDTF 149 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTTT
T ss_pred HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh--CCcCCCEEECCC-CcccccCHhHh
Confidence 5567777777777777775 7765 55677777777777777777766 44566 777777777777 77777765432
Q ss_pred ---cCccceeeccCCcCCcccccc--cCCCCccEEEeeCC
Q 036960 81 ---PSYPEKVDTFMLESLSKLFRI--ITTRKLTYFIFTKC 115 (176)
Q Consensus 81 ---~~L~~~L~l~~~~~L~~l~~~--~~~~~l~~l~~~~c 115 (176)
.+| ++|+++++ .+..++.. .....++.++++++
T Consensus 150 ~~l~~L-~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 150 RDLGNL-THLFLHGN-RISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp TTCTTC-CEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccCCCc-cEEECCCC-cccccCHHHhcCccccCEEECCCC
Confidence 266 77777665 45555332 23445666666554
No 67
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.13 E-value=2.3e-10 Score=95.02 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=89.5
Q ss_pred cCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCC-chhh
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSL-PKLL 79 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~l-P~~l 79 (176)
+|..++.+++|++|++++|.++++ |..++.+++|++|++++|.++.+ |..+. .+++|+.|++++ |.++.+ |..+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~~ 367 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE--NLDKLEVLDLSY-NHIRALGDQSF 367 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT--TCTTCCEEECCS-SCCCEECTTTT
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc--CcccCCEEECCC-CcccccChhhc
Confidence 466788899999999999999985 55889999999999999999977 45678 899999999999 888777 4444
Q ss_pred hc--CccceeeccCCcCCccccccc--CCCCccEEEeeCCcCccccc
Q 036960 80 LP--SYPEKVDTFMLESLSKLFRII--TTRKLTYFIFTKCLKLNKSG 122 (176)
Q Consensus 80 ~~--~L~~~L~l~~~~~L~~l~~~~--~~~~l~~l~~~~c~~l~~~~ 122 (176)
.. +| ++|+++++ .++.++... ....++.++++++.--...+
T Consensus 368 ~~l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 368 LGLPNL-KELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTC-CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccc-cEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 43 78 89999875 577765432 45678888888766544444
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.12 E-value=1.5e-10 Score=98.31 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=55.8
Q ss_pred ccCCCCCcEEeccCCCCcccc---ccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCc
Q 036960 7 IGCLSLLKELNLCVNDFQRLP---ASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSY 83 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L 83 (176)
++.+++|++|++++|.++++| ..++.+++|++|++++|+++.+|..+. .+++|+.|++++ |.++.+|..++.+|
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~--~~~~L~~L~Ls~-N~l~~l~~~~~~~L 433 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ--WPEKMRFLNLSS-TGIRVVKTCIPQTL 433 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCC--CCTTCCEEECTT-SCCSCCCTTSCTTC
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhc--ccccccEEECCC-CCcccccchhcCCc
Confidence 456667777777777776654 246677777777777777777777777 777777777777 77777765555455
Q ss_pred cceeeccCC
Q 036960 84 PEKVDTFML 92 (176)
Q Consensus 84 ~~~L~l~~~ 92 (176)
++|+++++
T Consensus 434 -~~L~Ls~N 441 (549)
T 2z81_A 434 -EVLDVSNN 441 (549)
T ss_dssp -SEEECCSS
T ss_pred -eEEECCCC
Confidence 55555544
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.12 E-value=4.2e-10 Score=90.92 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=89.0
Q ss_pred ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccC-cccccccCCccceeeccccCCCCCCchhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLP-ITISIKQISPLRTLELRNCNTLQSLPKLL 79 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP-~~~~~~~l~~L~~L~l~~cn~l~~lP~~l 79 (176)
++|..+. ++|++|++++|.++++|. .+..+++|++|++++|+++.++ ..+. ++++|++|++++ |.++.+|...
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~l~~~~~~~ 119 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS--SLGSLEHLDLSY-NYLSNLSSSW 119 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCS-SCCSSCCHHH
T ss_pred ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC--CCCCCCEEECCC-CcCCcCCHhH
Confidence 4676654 589999999999999877 7999999999999999999774 5689 999999999999 9999999763
Q ss_pred -h--cCccceeeccCCcCCccccc---ccCCCCccEEEeeCCcCc
Q 036960 80 -L--PSYPEKVDTFMLESLSKLFR---IITTRKLTYFIFTKCLKL 118 (176)
Q Consensus 80 -~--~~L~~~L~l~~~~~L~~l~~---~~~~~~l~~l~~~~c~~l 118 (176)
. .+| ++|+++++ .+..++. .....+++.++++++..+
T Consensus 120 ~~~l~~L-~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 120 FKPLSSL-TFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp HTTCTTC-SEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred hCCCccC-CEEECCCC-CCcccCchhhhccCCCCcEEECCCCccc
Confidence 3 278 99999876 5666654 224567788888776433
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.12 E-value=3.6e-10 Score=89.43 Aligned_cols=108 Identities=23% Similarity=0.311 Sum_probs=61.0
Q ss_pred CccccCCCCCcEEeccCCCCcc--ccccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhh
Q 036960 4 LQDIGCLSLLKELNLCVNDFQR--LPASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
|..+..+++|++|++++|.+++ +|..+..+++|++|++++|+++.+ |..+. .+++|+.|++++ |.++.++....
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~ 219 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN--SLSSLQVLNMSH-NNFFSLDTFPY 219 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTT-SCCSBCCSGGG
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc--CCCCCCEEECCC-CccCccChhhc
Confidence 3445556666666666666654 555666666666666666666655 44566 666666666666 66666554222
Q ss_pred ---cCccceeeccCCcCCccc-ccccC-C-CCccEEEeeCCc
Q 036960 81 ---PSYPEKVDTFMLESLSKL-FRIIT-T-RKLTYFIFTKCL 116 (176)
Q Consensus 81 ---~~L~~~L~l~~~~~L~~l-~~~~~-~-~~l~~l~~~~c~ 116 (176)
.+| ++|+++++. +... +.... . ..++.++++++.
T Consensus 220 ~~l~~L-~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 220 KCLNSL-QVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCTTC-CEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCcccC-CEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence 256 666666553 3322 22221 1 256666665543
No 71
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.12 E-value=5.7e-10 Score=88.37 Aligned_cols=101 Identities=21% Similarity=0.288 Sum_probs=65.3
Q ss_pred ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Ccc
Q 036960 7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SYP 84 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L~ 84 (176)
+..+++|++|++++|.++.+|. ++.+++|++|++++|+++.++ .+. .+++|+.|++++ |.++.++ .+.. +|
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~--~l~~L~~L~l~~-n~l~~~~-~l~~l~~L- 158 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLV--HLPQLESLYLGN-NKITDIT-VLSRLTKL- 158 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGG--GCTTCCEEECCS-SCCCCCG-GGGGCTTC-
T ss_pred cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhc--CCCCCCEEEccC-CcCCcch-hhccCCCC-
Confidence 6677777777777777777653 777777777777777777663 466 677777777777 7776664 3332 56
Q ss_pred ceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 85 EKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 85 ~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
++|+++++ .+..++.......++.++++++
T Consensus 159 ~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 159 DTLSLEDN-QISDIVPLAGLTKLQNLYLSKN 188 (291)
T ss_dssp SEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred CEEEccCC-ccccchhhcCCCccCEEECCCC
Confidence 66766655 4544443334445566655544
No 72
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=3.1e-10 Score=98.10 Aligned_cols=91 Identities=24% Similarity=0.319 Sum_probs=80.6
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCC--chhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSL--PKLL 79 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~l--P~~l 79 (176)
.+|. ++.+++|++|++++|.|+.+|..++.+++|++|++++|+|+.+| .++ .+++|+.|++++ |.++.+ |..+
T Consensus 455 ~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~--~l~~L~~L~Ls~-N~l~~~~~p~~l 529 (567)
T 1dce_A 455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVA--NLPRLQELLLCN-NRLQQSAAIQPL 529 (567)
T ss_dssp SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGT--TCSSCCEEECCS-SCCCSSSTTGGG
T ss_pred CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccC--CCCCCcEEECCC-CCCCCCCCcHHH
Confidence 4676 89999999999999999999999999999999999999999998 889 999999999999 999988 7776
Q ss_pred hc--CccceeeccCCcCCcccc
Q 036960 80 LP--SYPEKVDTFMLESLSKLF 99 (176)
Q Consensus 80 ~~--~L~~~L~l~~~~~L~~l~ 99 (176)
.. +| +.|+++++ .+..++
T Consensus 530 ~~l~~L-~~L~L~~N-~l~~~~ 549 (567)
T 1dce_A 530 VSCPRL-VLLNLQGN-SLCQEE 549 (567)
T ss_dssp GGCTTC-CEEECTTS-GGGGSS
T ss_pred hcCCCC-CEEEecCC-cCCCCc
Confidence 64 78 89999876 455553
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.11 E-value=2.8e-10 Score=98.42 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=86.0
Q ss_pred CccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960 4 LQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP- 81 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~- 81 (176)
++.++.+++|++|++++|.+++ .|..++.+++|++|++++|.++.+|..+. .+++|+.|++++ |.+..+|..+..
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~l~~L~~L~Ls~-N~l~~i~~~~~~l 323 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ--PIPTLKVLDLSH-NHLLHVERNQPQF 323 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSS--CCTTCCEEECCS-SCCCCCGGGHHHH
T ss_pred ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccc--cCCCCcEEECCC-CCCCccCcccccC
Confidence 3557788999999999999988 46789999999999999999999888888 899999999999 999999877653
Q ss_pred -CccceeeccCCcCCcccccccCCCCccEEEeeCCc
Q 036960 82 -SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCL 116 (176)
Q Consensus 82 -~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~ 116 (176)
+| ++|+++++ .+..++ ......++.++++++.
T Consensus 324 ~~L-~~L~L~~N-~l~~~~-~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 324 DRL-ENLYLDHN-SIVTLK-LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TTC-SEEECCSS-CCCCCC-CCTTCCCSEEECCSSC
T ss_pred CCC-CEEECCCC-CCCCcC-hhhcCCCCEEEeeCCC
Confidence 78 89999876 455552 3345567777776654
No 74
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=5.1e-10 Score=81.97 Aligned_cols=85 Identities=26% Similarity=0.398 Sum_probs=71.3
Q ss_pred ccCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLL 79 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l 79 (176)
++|..+ .++|++|++++|.|+++ |..+..+++|++|++++|+|+.+|.. |. ++++|+.|++++ |.++.+|...
T Consensus 23 ~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~-N~l~~~~~~~ 97 (170)
T 3g39_A 23 SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD--KLTQLTQLSLND-NQLKSIPRGA 97 (170)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTT
T ss_pred ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc--CCCCCCEEECCC-CccCEeCHHH
Confidence 467666 37899999999999997 55799999999999999999999876 68 999999999999 9999999764
Q ss_pred hc---CccceeeccCC
Q 036960 80 LP---SYPEKVDTFML 92 (176)
Q Consensus 80 ~~---~L~~~L~l~~~ 92 (176)
.. +| ++|++++.
T Consensus 98 ~~~l~~L-~~L~L~~N 112 (170)
T 3g39_A 98 FDNLKSL-THIWLLNN 112 (170)
T ss_dssp TTTCTTC-CEEECCSS
T ss_pred hcCCCCC-CEEEeCCC
Confidence 42 55 66666554
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.10 E-value=1.2e-10 Score=92.93 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=74.2
Q ss_pred CccccCCCCCcEEeccCCCCcc---ccccc--cCCCCCcEEEeeCCCCcccC---cc-cccccCCccceeeccccCCCCC
Q 036960 4 LQDIGCLSLLKELNLCVNDFQR---LPASI--GSLSSLKRMNLVENKLDNLP---IT-ISIKQISPLRTLELRNCNTLQS 74 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~---lp~~~--~~l~~L~~L~l~~n~l~~lP---~~-~~~~~l~~L~~L~l~~cn~l~~ 74 (176)
|..++.+++|++|++++|++.+ +|..+ +.+++|++|++++|+|+.+| .. +. .+++|+.|++++ |.++.
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--~l~~L~~L~Ls~-N~l~~ 242 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA--ARVQLQGLDLSH-NSLRD 242 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH--TTCCCSEEECTT-SCCCS
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh--cCCCCCEEECCC-CcCCc
Confidence 3678888888888888888755 34444 78888888888888888443 22 35 678888888888 88866
Q ss_pred Cc-hh-hh--cCccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 75 LP-KL-LL--PSYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 75 lP-~~-l~--~~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
.+ .. +. .+| ++|+++++ .++.+|.... ..++.++++++
T Consensus 243 ~~~~~~~~~l~~L-~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N 284 (312)
T 1wwl_A 243 AAGAPSCDWPSQL-NSLNLSFT-GLKQVPKGLP-AKLSVLDLSYN 284 (312)
T ss_dssp SCCCSCCCCCTTC-CEEECTTS-CCSSCCSSCC-SEEEEEECCSS
T ss_pred ccchhhhhhcCCC-CEEECCCC-ccChhhhhcc-CCceEEECCCC
Confidence 44 12 21 367 88888775 4666655444 66777777765
No 76
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.09 E-value=5.1e-10 Score=96.23 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=71.6
Q ss_pred ccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCch-hhhc
Q 036960 5 QDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPK-LLLP 81 (176)
Q Consensus 5 ~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~-~l~~ 81 (176)
..|.++++|++|++++|.++++ |..|+.+++|++|++++|.++.+ |..|+ ++++|++|++++ |.+..+|. .+..
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~-n~l~~~~~~~~~~ 126 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS--GLTSLENLVAVE-TKLASLESFPIGQ 126 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST--TCTTCCEEECTT-SCCCCSSSSCCTT
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC--CcccCCEEEccC-CccccccccccCC
Confidence 3577778888888888887775 44677788888888888887766 66677 788888888888 77776662 2332
Q ss_pred --CccceeeccCCcCCcc--ccccc-CCCCccEEEeeCC
Q 036960 82 --SYPEKVDTFMLESLSK--LFRII-TTRKLTYFIFTKC 115 (176)
Q Consensus 82 --~L~~~L~l~~~~~L~~--l~~~~-~~~~l~~l~~~~c 115 (176)
+| ++|+++++. +.. +|... ...+++.++++++
T Consensus 127 l~~L-~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 127 LITL-KKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CTTC-CEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CCCC-CEEeCCCCc-ccceechHhHhhcCCCCEEEccCC
Confidence 67 777777653 332 33322 3456677776665
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.08 E-value=2.6e-10 Score=96.89 Aligned_cols=66 Identities=27% Similarity=0.378 Sum_probs=34.5
Q ss_pred ccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCC
Q 036960 5 QDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQ 73 (176)
Q Consensus 5 ~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~ 73 (176)
..|.++++|++|++++|.+++++ ..++.+++|++|++++|+++.+|.. ++ ++++|++|++++ |.++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~l~ 111 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG--PLSSLKYLNLMG-NPYQ 111 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT--TCTTCCEEECTT-CCCS
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc--cCCCCcEEECCC-Cccc
Confidence 34455555555555555555533 3455555555555555555544433 45 555555555555 5554
No 78
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=3.2e-10 Score=83.53 Aligned_cols=85 Identities=24% Similarity=0.389 Sum_probs=73.0
Q ss_pred ccCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLL 79 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l 79 (176)
++|..+. ++|++|++++|+|+++ |..++.+++|++|++++|+|+.+|.. |. ++++|+.|++++ |.++.+|...
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~--~l~~L~~L~L~~-N~l~~l~~~~ 100 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD--KLTQLTQLDLND-NHLKSIPRGA 100 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCCTTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC--CcchhhEEECCC-CccceeCHHH
Confidence 4677664 8999999999999997 55899999999999999999999876 68 899999999999 9999999763
Q ss_pred hc---CccceeeccCC
Q 036960 80 LP---SYPEKVDTFML 92 (176)
Q Consensus 80 ~~---~L~~~L~l~~~ 92 (176)
.. +| ++|+++++
T Consensus 101 ~~~l~~L-~~L~L~~N 115 (174)
T 2r9u_A 101 FDNLKSL-THIYLYNN 115 (174)
T ss_dssp TTTCTTC-SEEECCSS
T ss_pred hccccCC-CEEEeCCC
Confidence 32 67 77777665
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.08 E-value=3.7e-10 Score=95.48 Aligned_cols=108 Identities=17% Similarity=0.266 Sum_probs=59.8
Q ss_pred cCccccCCCCCcEEeccCCCCcc---ccccccCCCCCcEEEeeCCCCcc-cCcc-cccccCCccceeeccccCCC-CCCc
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQR---LPASIGSLSSLKRMNLVENKLDN-LPIT-ISIKQISPLRTLELRNCNTL-QSLP 76 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~l~~n~l~~-lP~~-~~~~~l~~L~~L~l~~cn~l-~~lP 76 (176)
+|..++.+++|++|++++|++++ +|..++.+++|++|++++|.++. +|.. +. .+++|+.|++++ |.+ +.+|
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~--~l~~L~~L~Ls~-N~l~~~~~ 416 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS--WTKSLLSLNMSS-NILTDTIF 416 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC--CCTTCCEEECCS-SCCCGGGG
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc--cCccCCEEECcC-CCCCcchh
Confidence 45666667777777777777664 34456677777777777777765 6654 44 555555555555 444 3333
Q ss_pred hhhhcCccceeeccCCcCCccccccc-CCCCccEEEeeCC
Q 036960 77 KLLLPSYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKC 115 (176)
Q Consensus 77 ~~l~~~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c 115 (176)
..++.+| +.|+++++ .++.+|... ....++.++++++
T Consensus 417 ~~l~~~L-~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 417 RCLPPRI-KVLDLHSN-KIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp GSCCTTC-CEEECCSS-CCCCCCGGGGGCTTCCEEECCSS
T ss_pred hhhcccC-CEEECCCC-cccccchhhhcCCCCCEEECCCC
Confidence 3333445 55555544 344443322 3334445544443
No 80
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.07 E-value=6.4e-10 Score=98.85 Aligned_cols=64 Identities=33% Similarity=0.445 Sum_probs=30.3
Q ss_pred cCccccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccc
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRN 68 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~ 68 (176)
+|..++.+++|++|++++|.+++ +|..++.+++|++|++++|.++ .+|..+. .+++|+.|++++
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~ 475 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDF 475 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCS
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCceEEEecC
Confidence 34444455555555555554443 4444444444444444444444 3444444 444444444444
No 81
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.07 E-value=4.5e-10 Score=91.43 Aligned_cols=90 Identities=22% Similarity=0.284 Sum_probs=78.5
Q ss_pred ccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhh--
Q 036960 5 QDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLL-- 80 (176)
Q Consensus 5 ~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~-- 80 (176)
..|..+++|++|+|++|+|+.+|. .|..+++|++|++++|+|+.+ |..|. ++++|+.|++++ |.++.+|..+.
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~-N~l~~l~~~~~~~ 158 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE--DMAQLQKLYLSQ-NQISRFPVELIKD 158 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCS-SCCCSCCGGGTC-
T ss_pred hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC--CcccCCEEECCC-CcCCeeCHHHhcC
Confidence 458899999999999999999776 689999999999999999977 55689 999999999999 99999998763
Q ss_pred ----cCccceeeccCCcCCcccc
Q 036960 81 ----PSYPEKVDTFMLESLSKLF 99 (176)
Q Consensus 81 ----~~L~~~L~l~~~~~L~~l~ 99 (176)
.+| ++|+++++ .++.++
T Consensus 159 ~~~l~~L-~~L~L~~N-~l~~l~ 179 (361)
T 2xot_A 159 GNKLPKL-MLLDLSSN-KLKKLP 179 (361)
T ss_dssp ---CTTC-CEEECCSS-CCCCCC
T ss_pred cccCCcC-CEEECCCC-CCCccC
Confidence 378 89999875 566664
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.07 E-value=7.4e-10 Score=93.09 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=70.3
Q ss_pred cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcC
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPS 82 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~ 82 (176)
+| +++.+++|++|++++|+++++|..+ .+|++|++++|+++.+| .++ ++++|+.|++++ |.++.+|. ...+
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~--~l~~L~~L~l~~-N~l~~l~~-~~~~ 216 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQ--NLPFLTAIYADN-NSLKKLPD-LPLS 216 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCT--TCTTCCEEECCS-SCCSSCCC-CCTT
T ss_pred Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-ccc--CCCCCCEEECCC-CcCCcCCC-CcCc
Confidence 45 4677777777777777777766543 36777777777777776 577 888888888888 88887774 3357
Q ss_pred ccceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 83 YPEKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 83 L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
| ++|+++++ .+..+|+......++.++++++
T Consensus 217 L-~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 217 L-ESIVAGNN-ILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp C-CEEECCSS-CCSSCCCCTTCTTCCEEECCSS
T ss_pred c-cEEECcCC-cCCcccccCCCCCCCEEECCCC
Confidence 7 88888766 4556654444556666666554
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.07 E-value=6.9e-10 Score=86.66 Aligned_cols=106 Identities=19% Similarity=0.203 Sum_probs=64.4
Q ss_pred cccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccC-cccccccCCccceeeccccCCCCCCchh-hh--
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLP-ITISIKQISPLRTLELRNCNTLQSLPKL-LL-- 80 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP-~~~~~~~l~~L~~L~l~~cn~l~~lP~~-l~-- 80 (176)
.+.++++|++|++++|.++.++. .+..+++|++|++++|.++.++ ..+. ++++|+.|++++ |.+..++.. +.
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~~~~~~~l 123 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVE-TNLASLENFPIGHL 123 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTT-SCCCCSTTCCCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc--CCccccEEECCC-CCccccCchhcccC
Confidence 45666677777777777666544 5666777777777777766554 3466 677777777777 666665542 22
Q ss_pred cCccceeeccCCcCCcc--ccccc-CCCCccEEEeeCCc
Q 036960 81 PSYPEKVDTFMLESLSK--LFRII-TTRKLTYFIFTKCL 116 (176)
Q Consensus 81 ~~L~~~L~l~~~~~L~~--l~~~~-~~~~l~~l~~~~c~ 116 (176)
.+| ++|+++++ .+.. ++... ...+++.++++++.
T Consensus 124 ~~L-~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 124 KTL-KELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TTC-CEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCC-CEEECcCC-ccceecCchhhccCCCCCEEECCCCC
Confidence 256 67777654 3433 22222 34567777776653
No 84
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.07 E-value=3e-10 Score=99.05 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=87.1
Q ss_pred CCCCcEEeccCCCCcccccccc--CCCCCcEEEeeCCCCcccCcccccccCCccceeeccc-----cCC-CCCCchhhhc
Q 036960 10 LSLLKELNLCVNDFQRLPASIG--SLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRN-----CNT-LQSLPKLLLP 81 (176)
Q Consensus 10 l~~L~~L~L~~n~l~~lp~~~~--~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~-----cn~-l~~lP~~l~~ 81 (176)
+++|++|++++|.++.+|..+. .+++|++|++++|+++.+|..+. .+++|+.|++++ .|. .+.+|..+..
T Consensus 487 l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL--NSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp GGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG--GCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhh--cCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 3489999999999999999887 99999999999999999999999 999999999954 044 4688877764
Q ss_pred --CccceeeccCCcCCcccccccCCCCccEEEeeCCcCcc
Q 036960 82 --SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLN 119 (176)
Q Consensus 82 --~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~~l~ 119 (176)
+| ++|+++++ .+..+|.... ..++.++++++.-..
T Consensus 565 l~~L-~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 565 CPSL-TQLQIGSN-DIRKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp CSSC-CEEECCSS-CCCBCCSCCC-TTCCEEECCSCTTCE
T ss_pred CCCC-CEEECCCC-cCCccCHhHh-CcCCEEECcCCCCcc
Confidence 78 99999887 4688866544 688999998886543
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.06 E-value=6e-10 Score=95.37 Aligned_cols=105 Identities=23% Similarity=0.281 Sum_probs=70.8
Q ss_pred cCccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhh
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
+|..+. ++|++|++++|.++++| ..++.+++|++|++++|+|+.+ |..|. ++++|++|++++ |.++.+|..-.
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~lp~~~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL--FNQDLEYLDVSH-NRLQNISCCPM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT--TCTTCCEEECTT-SCCCEECSCCC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC--CCCCCCEEECCC-CcCCccCcccc
Confidence 555543 67788888888887765 4778888888888888888766 45577 788888888888 77877776523
Q ss_pred cCccceeeccCCcCCcccc--c-ccCCCCccEEEeeC
Q 036960 81 PSYPEKVDTFMLESLSKLF--R-IITTRKLTYFIFTK 114 (176)
Q Consensus 81 ~~L~~~L~l~~~~~L~~l~--~-~~~~~~l~~l~~~~ 114 (176)
.+| ++|+++++ .+..++ . .....+++.+++++
T Consensus 121 ~~L-~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 121 ASL-RHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp TTC-SEEECCSS-CCSBCCCCGGGGGCTTCCEEEEEC
T ss_pred ccC-CEEECCCC-CccccCchHhhcccCcccEEecCC
Confidence 367 77777665 344432 1 22345566666655
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.06 E-value=4.3e-10 Score=95.09 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=72.9
Q ss_pred ccCccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLL 79 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l 79 (176)
++|..+. ++|++|++++|.+++++ ..+..+++|++|++++|+++.+ |..|. ++++|++|++++ |.++.+|..-
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~lp~~~ 88 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFK--FNQELEYLDLSH-NKLVKISCHP 88 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGT--TCTTCCEEECCS-SCCCEEECCC
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhh--cccCCCEEecCC-CceeecCccc
Confidence 3566654 67888888888887765 4778888888888888888766 56677 788888888888 7887777652
Q ss_pred hcCccceeeccCCcCCcc--ccc-ccCCCCccEEEeeCC
Q 036960 80 LPSYPEKVDTFMLESLSK--LFR-IITTRKLTYFIFTKC 115 (176)
Q Consensus 80 ~~~L~~~L~l~~~~~L~~--l~~-~~~~~~l~~l~~~~c 115 (176)
..+| ++|+++++. +.. +|+ .....+++.++++++
T Consensus 89 l~~L-~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 89 TVNL-KHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp CCCC-SEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEES
T ss_pred cCCc-cEEeccCCc-cccccchhhhccCCcceEEEecCc
Confidence 2367 777777653 433 222 223456666666553
No 87
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=1.6e-10 Score=104.45 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=60.2
Q ss_pred cCcccc--CCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCC-Ccc--cCcccccccCC-------ccceeecccc
Q 036960 3 ILQDIG--CLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENK-LDN--LPITISIKQIS-------PLRTLELRNC 69 (176)
Q Consensus 3 lP~~l~--~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~-l~~--lP~~~~~~~l~-------~L~~L~l~~c 69 (176)
+|+.++ ++++|++|++++|.+.+ +|..++.+++|++|++++|+ ++. +|..++ .++ +|+.|++++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~--~L~~~~~~l~~L~~L~Ls~- 557 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT--RLADDEDTGPKIQIFYMGY- 557 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH--HHHHCTTTTTTCCEEECCS-
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH--hhhhcccccCCccEEEeeC-
Confidence 666665 67777777777776544 66666666666666666665 553 565554 444 666666666
Q ss_pred CCCCCCch--hhhc--CccceeeccCCcCCcccccccCCCCccEEEeeC
Q 036960 70 NTLQSLPK--LLLP--SYPEKVDTFMLESLSKLFRIITTRKLTYFIFTK 114 (176)
Q Consensus 70 n~l~~lP~--~l~~--~L~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~ 114 (176)
|.++.+|. .+.. +| +.|+++++ .+..+|......+++.+++++
T Consensus 558 N~L~~ip~~~~l~~L~~L-~~L~Ls~N-~l~~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 558 NNLEEFPASASLQKMVKL-GLLDCVHN-KVRHLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp SCCCBCCCHHHHTTCTTC-CEEECTTS-CCCBCCCCCTTSEESEEECCS
T ss_pred CcCCccCChhhhhcCCCC-CEEECCCC-CcccchhhcCCCcceEEECcC
Confidence 66666665 3433 55 55665544 233443222233344444433
No 88
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.06 E-value=7.7e-10 Score=95.09 Aligned_cols=107 Identities=19% Similarity=0.118 Sum_probs=70.9
Q ss_pred CccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCc-hhhh
Q 036960 4 LQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLP-KLLL 80 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP-~~l~ 80 (176)
|..|+++++|++|++++|.++.+ |..|+.+++|++|++++|+++.+ |..++ ++++|++|++++ |.++.++ ..+.
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~-n~i~~l~~~~~~ 126 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS--GPKALKHLFFIQ-TGISSIDFIPLH 126 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS--SCTTCCEEECTT-SCCSCGGGSCCT
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc--ccccccEeeccc-cCcccCCcchhc
Confidence 45677778888888888877774 55777888888888888887755 55677 778888888887 7777663 2222
Q ss_pred c--CccceeeccCCcCCccc--ccccCCCCccEEEeeCC
Q 036960 81 P--SYPEKVDTFMLESLSKL--FRIITTRKLTYFIFTKC 115 (176)
Q Consensus 81 ~--~L~~~L~l~~~~~L~~l--~~~~~~~~l~~l~~~~c 115 (176)
. +| ++|+++++ .+..+ +......+++.++++++
T Consensus 127 ~l~~L-~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 127 NQKTL-ESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp TCTTC-CEEECCSS-CCCCCCCCTTCCCTTCCEEECCSS
T ss_pred cCCcc-cEEECCCC-cccccCcccccCCcccCEEEcccC
Confidence 2 66 77777665 34333 33333455666666554
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.05 E-value=1.2e-09 Score=85.37 Aligned_cols=83 Identities=31% Similarity=0.400 Sum_probs=48.4
Q ss_pred cccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCC--Cchhhhc
Q 036960 6 DIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQS--LPKLLLP 81 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~--lP~~l~~ 81 (176)
.+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++. .+. .+++|+.|++++ |.++. +|..+..
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~l~~~~~~ 147 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAH-NLIQSFKLPEYFSN 147 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCT--TCTTCCEEECCS-SCCCCCCCCGGGGG
T ss_pred HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcc--cCCCCCEEECcC-CccceecCchhhcc
Confidence 4566666666666666666644 356666666666666666665544 355 566666666666 66554 4444432
Q ss_pred --CccceeeccCC
Q 036960 82 --SYPEKVDTFML 92 (176)
Q Consensus 82 --~L~~~L~l~~~ 92 (176)
+| ++|+++++
T Consensus 148 l~~L-~~L~Ls~N 159 (276)
T 2z62_A 148 LTNL-EHLDLSSN 159 (276)
T ss_dssp CTTC-CEEECCSS
T ss_pred CCCC-CEEECCCC
Confidence 55 55555543
No 90
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.04 E-value=7.3e-10 Score=95.25 Aligned_cols=110 Identities=18% Similarity=0.221 Sum_probs=62.9
Q ss_pred cCccccCCCCCcEEeccCCCCcc--ccccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCC-chh
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQR--LPASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSL-PKL 78 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~l-P~~ 78 (176)
+|..++.+++|++|++++|.+++ +|..++.+++|++|++++|+++.+ |..+. ++++|+.|++++ |.+..+ |..
T Consensus 440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~-N~l~~~~~~~ 516 (606)
T 3vq2_A 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD--TLHRLQLLNMSH-NNLLFLDSSH 516 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCS-SCCSCEEGGG
T ss_pred chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc--ccccCCEEECCC-CcCCCcCHHH
Confidence 34455566666666666666654 455666666666666666666644 34466 666666666666 666554 333
Q ss_pred hhc--CccceeeccCCcCCcccccccCC--CCccEEEeeCCcC
Q 036960 79 LLP--SYPEKVDTFMLESLSKLFRIITT--RKLTYFIFTKCLK 117 (176)
Q Consensus 79 l~~--~L~~~L~l~~~~~L~~l~~~~~~--~~l~~l~~~~c~~ 117 (176)
+.. +| ++|+++++ .++.+|..... ..++.++++++.-
T Consensus 517 ~~~l~~L-~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 517 YNQLYSL-STLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TTTCTTC-CEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred ccCCCcC-CEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 332 56 66666655 35555443322 2366666665443
No 91
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.04 E-value=9.5e-10 Score=92.10 Aligned_cols=68 Identities=25% Similarity=0.461 Sum_probs=38.2
Q ss_pred ccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCC
Q 036960 5 QDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSL 75 (176)
Q Consensus 5 ~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~l 75 (176)
..|.++++|++|++++|.++.+ |..++.+++|++|++++|+++.+|.. +. ++++|+.|++++ |.+..+
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~i~~~ 119 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT--GLSNLTKLDISE-NKIVIL 119 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST--TCTTCCEEECTT-SCCCEE
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccccc--CCCCCCEEECCC-CccccC
Confidence 3455555666666666655553 44555566666666666665555543 45 555566666655 555444
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.02 E-value=1.4e-09 Score=94.68 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=57.8
Q ss_pred cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY 83 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L 83 (176)
.+..+++|+.|+|++|.|+.+|. +..+++|+.|+|++|.|+.+| .+. .+++|+.|++++ |.+..+| .+.. +|
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~--~l~~L~~L~Ls~-N~l~~l~-~l~~l~~L 133 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLK--DLKKLKSLSLEH-NGISDIN-GLVHLPQL 133 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TST--TCTTCCEEECTT-SCCCCCG-GGGGCTTC
T ss_pred HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhc--cCCCCCEEEecC-CCCCCCc-cccCCCcc
Confidence 45666777777777777777654 666666777777776666655 455 666666666666 6666655 2322 45
Q ss_pred cceeeccCCcCCcccccccCCCCccEEEeeC
Q 036960 84 PEKVDTFMLESLSKLFRIITTRKLTYFIFTK 114 (176)
Q Consensus 84 ~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~ 114 (176)
+.|+++++ .+..++.......|+.|++++
T Consensus 134 -~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 134 -ESLYLGNN-KITDITVLSRLTKLDTLSLED 162 (605)
T ss_dssp -SEEECCSS-CCCCCGGGGSCTTCSEEECCS
T ss_pred -CEEECCCC-ccCCchhhcccCCCCEEECcC
Confidence 55555543 233332222333444444433
No 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.02 E-value=3.1e-10 Score=90.47 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=63.3
Q ss_pred CCCCCcEEeccCCCCcc-ccccc--cCCCCCcEEEeeCCCCcccCcccccccC-----CccceeeccccCCCCCCch-hh
Q 036960 9 CLSLLKELNLCVNDFQR-LPASI--GSLSSLKRMNLVENKLDNLPITISIKQI-----SPLRTLELRNCNTLQSLPK-LL 79 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l~~-lp~~~--~~l~~L~~L~l~~n~l~~lP~~~~~~~l-----~~L~~L~l~~cn~l~~lP~-~l 79 (176)
++++|++|++++|.+++ +|..+ +.+++|++|++++|+++.+|..+. .+ ++|++|++++ |.++.+|. .+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~l~~~~~~~L~~L~L~~-N~l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA--ELQQWLKPGLKVLSIAQ-AHSLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHH--HHHTTCCTTCCEEEEES-CSCCCCCTTTC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHH--HHHHhhcCCCcEEEeeC-CCCccchHHHh
Confidence 56777777777777764 66655 677777777777777776666666 55 6777777777 77766663 33
Q ss_pred hc--CccceeeccCCcCCccc--c-cc--cCCCCccEEEeeCC
Q 036960 80 LP--SYPEKVDTFMLESLSKL--F-RI--ITTRKLTYFIFTKC 115 (176)
Q Consensus 80 ~~--~L~~~L~l~~~~~L~~l--~-~~--~~~~~l~~l~~~~c 115 (176)
.. +| ++|+++++.-...+ + .. ....+++.++++++
T Consensus 170 ~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 170 RVFPAL-STLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp CCCSSC-CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred ccCCCC-CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 22 56 67777665422211 1 11 23445666666654
No 94
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.02 E-value=4.2e-10 Score=92.03 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=77.2
Q ss_pred cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcC
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPS 82 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~ 82 (176)
.|..+..+++|++|++++|.++.+|..+..+++|++|++++|+++.+|..+. .+++|+.|++++ |.++.+|.....+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~l~~L~~L~L~~-N~i~~~~~~~~~~ 340 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--QFDRLENLYLDH-NSIVTLKLSTHHT 340 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH--HHTTCSEEECCS-SCCCCCCCCTTCC
T ss_pred ChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCcccc--ccCcCCEEECCC-CccceeCchhhcc
Confidence 4778899999999999999999999888999999999999999999999898 999999999999 9999988555557
Q ss_pred ccceeeccCC
Q 036960 83 YPEKVDTFML 92 (176)
Q Consensus 83 L~~~L~l~~~ 92 (176)
| +.|+++++
T Consensus 341 L-~~L~l~~N 349 (390)
T 3o6n_A 341 L-KNLTLSHN 349 (390)
T ss_dssp C-SEEECCSS
T ss_pred C-CEEEcCCC
Confidence 7 78887765
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.02 E-value=6.7e-10 Score=89.96 Aligned_cols=103 Identities=24% Similarity=0.185 Sum_probs=87.5
Q ss_pred ccCC-CCCcEEeccCCCCccccccccCCCCCcEEEeeC-CCCcccCcc-cccccCCccceeeccccCCCCCCchhhhcCc
Q 036960 7 IGCL-SLLKELNLCVNDFQRLPASIGSLSSLKRMNLVE-NKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLLPSY 83 (176)
Q Consensus 7 l~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~-n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L 83 (176)
+..+ ..++.|++++|+|+.+|..+....+|+++++++ |.++.+|.. |. ++++|+.|++++ |+++.+|.....+|
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~--~l~~L~~LdLs~-N~l~~lp~~~~~~L 225 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH--GASGPVILDISR-TRIHSLPSYGLENL 225 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTT--TEECCSEEECTT-SCCCCCCSSSCTTC
T ss_pred hhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhc--cCcccchhhcCC-CCcCccChhhhccc
Confidence 4444 468889999999999998887888999999975 779999875 78 999999999999 99999998877889
Q ss_pred cceeeccCCcCCcccccccCCCCccEEEee
Q 036960 84 PEKVDTFMLESLSKLFRIITTRKLTYFIFT 113 (176)
Q Consensus 84 ~~~L~l~~~~~L~~l~~~~~~~~l~~l~~~ 113 (176)
+.|.+.++..++.+|......+++.+.+.
T Consensus 226 -~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 226 -KKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp -CEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred -hHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 99999899999999876667777777653
No 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.02 E-value=1.1e-09 Score=87.75 Aligned_cols=107 Identities=23% Similarity=0.205 Sum_probs=74.8
Q ss_pred cCccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhh
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
+|..+. ++|++|++++|.++.++ ..+..+++|++|++++|+++.++. .+. .+++|+.|++++ |.++.+|..+.
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~lp~~l~ 261 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS--FLPTLRELHLDN-NKLSRVPAGLP 261 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG--GCTTCCEEECCS-SCCCBCCTTGG
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh--CCCCCCEEECCC-CcCeecChhhh
Confidence 444443 57888888888888855 578888888888888888887654 577 788888888888 88888887665
Q ss_pred c--CccceeeccCCcCCcccccccC--------CCCccEEEeeCCc
Q 036960 81 P--SYPEKVDTFMLESLSKLFRIIT--------TRKLTYFIFTKCL 116 (176)
Q Consensus 81 ~--~L~~~L~l~~~~~L~~l~~~~~--------~~~l~~l~~~~c~ 116 (176)
. +| ++|+++++ .+..++.... ...++.+.+.++.
T Consensus 262 ~l~~L-~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 262 DLKLL-QVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp GCTTC-CEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred cCccC-CEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 4 67 88888765 4555532221 2345667776654
No 97
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.02 E-value=1.6e-09 Score=94.38 Aligned_cols=108 Identities=20% Similarity=0.237 Sum_probs=79.3
Q ss_pred cCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc---------ccccccCCccceeeccccCCC
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI---------TISIKQISPLRTLELRNCNTL 72 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~---------~~~~~~l~~L~~L~l~~cn~l 72 (176)
+|..++.+++|++|++++|+++.+|. .+..+++|++|++++|+++.++. .+. ++++|+.|++++ |.+
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~--~l~~L~~L~L~~-N~l 548 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK--GLSHLHILNLES-NGF 548 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTT--TCTTCCEEECCS-SCC
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhc--CCCCCCEEECCC-CCC
Confidence 56778888888888888888888765 57888888888888888876532 256 788888888888 888
Q ss_pred CCCchhhhc---CccceeeccCCcCCccccccc--CCCCccEEEeeCC
Q 036960 73 QSLPKLLLP---SYPEKVDTFMLESLSKLFRII--TTRKLTYFIFTKC 115 (176)
Q Consensus 73 ~~lP~~l~~---~L~~~L~l~~~~~L~~l~~~~--~~~~l~~l~~~~c 115 (176)
+.+|..... +| +.|+++++ .++.++... ....++.++++++
T Consensus 549 ~~i~~~~~~~l~~L-~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 549 DEIPVEVFKDLFEL-KIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CCCCTTTTTTCTTC-CEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCHHHcccccCc-ceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 888865432 67 78888654 566665433 3456777777765
No 98
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.01 E-value=2.8e-09 Score=85.26 Aligned_cols=105 Identities=13% Similarity=0.194 Sum_probs=75.0
Q ss_pred CccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCch-hhhc
Q 036960 4 LQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPK-LLLP 81 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~-~l~~ 81 (176)
|..+.++++|++|++++|.++.+|..+. ++|++|++++|+++.+ |..+. .+++|+.|++++ |.++.++. .+..
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~-n~l~~~~~~~~~~ 238 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSF-NSISAVDNGSLAN 238 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGT--TCTTCCEEECCS-SCCCEECTTTGGG
T ss_pred hhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCC-CcCceeChhhccC
Confidence 5567788888888888888888876554 6788888888888865 55677 788888888888 77776664 2332
Q ss_pred --CccceeeccCCcCCccccccc-CCCCccEEEeeCC
Q 036960 82 --SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKC 115 (176)
Q Consensus 82 --~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c 115 (176)
+| ++|+++++ .+..+|... ....++.++++++
T Consensus 239 l~~L-~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 239 TPHL-RELHLNNN-KLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp STTC-CEEECCSS-CCSSCCTTTTTCSSCCEEECCSS
T ss_pred CCCC-CEEECCCC-cCccCChhhccCCCcCEEECCCC
Confidence 67 78888776 566665433 3456777777665
No 99
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.01 E-value=1e-09 Score=91.15 Aligned_cols=85 Identities=24% Similarity=0.275 Sum_probs=73.7
Q ss_pred CccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhhhc
Q 036960 4 LQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
|..|.++++|++|++++|.++++ |..++.+++|++|++++|+++.+ |..+. .+++|+.|++++ |.++.+|.....
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~ 392 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL--GLPNLKELALDT-NQLKSVPDGIFD 392 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCS-SCCSCCCTTTTT
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc--ccccccEEECCC-CccccCCHhHhc
Confidence 56788999999999999999996 56889999999999999999976 67799 999999999999 999999976543
Q ss_pred ---CccceeeccCC
Q 036960 82 ---SYPEKVDTFML 92 (176)
Q Consensus 82 ---~L~~~L~l~~~ 92 (176)
+| ++|+++++
T Consensus 393 ~l~~L-~~L~l~~N 405 (455)
T 3v47_A 393 RLTSL-QKIWLHTN 405 (455)
T ss_dssp TCTTC-CEEECCSS
T ss_pred cCCcc-cEEEccCC
Confidence 56 67777654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.00 E-value=1.8e-09 Score=93.97 Aligned_cols=101 Identities=22% Similarity=0.289 Sum_probs=55.2
Q ss_pred ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Ccc
Q 036960 7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SYP 84 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L~ 84 (176)
+..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|+|..+| .+. .+++|+.|++++ |.+..++ .+.. +|
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~--~l~~L~~L~Ls~-N~l~~l~-~l~~l~~L- 155 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLV--HLPQLESLYLGN-NKITDIT-VLSRLTKL- 155 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGG--GCTTCSEEECCS-SCCCCCG-GGGSCTTC-
T ss_pred hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-ccc--CCCccCEEECCC-CccCCch-hhcccCCC-
Confidence 556666666666666666655 5666666666666666666553 355 566666666666 5565553 3322 45
Q ss_pred ceeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 85 EKVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 85 ~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
+.|+++++ .+..++.......|+.|++++|
T Consensus 156 ~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 156 DTLSLEDN-QISDIVPLAGLTKLQNLYLSKN 185 (605)
T ss_dssp SEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred CEEECcCC-cCCCchhhccCCCCCEEECcCC
Confidence 55555544 3333333333344455544443
No 101
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.00 E-value=1.3e-09 Score=86.11 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=59.8
Q ss_pred cccCCCCCcEEeccCCCCcc-ccccccCCCCCcEEEeeCCCCcc--cCcccccccCCccceeeccccCCCCCCc-hhhhc
Q 036960 6 DIGCLSLLKELNLCVNDFQR-LPASIGSLSSLKRMNLVENKLDN--LPITISIKQISPLRTLELRNCNTLQSLP-KLLLP 81 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~--lP~~~~~~~l~~L~~L~l~~cn~l~~lP-~~l~~ 81 (176)
.+..+++|++|++++|.++. .|..+..+++|++|++++|.++. +|..+. .+++|+.|++++ |.++.++ ..+..
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~Ls~-n~l~~~~~~~~~~ 197 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQ-CQLEQLSPTAFNS 197 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTT-SCCCEECTTTTTT
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh--hCcCCCEEECCC-CCcCCcCHHHhcC
Confidence 45556666666666666655 33345666666666666666653 566666 667777777777 6666553 23322
Q ss_pred --CccceeeccCCcCCccccc--ccCCCCccEEEeeCC
Q 036960 82 --SYPEKVDTFMLESLSKLFR--IITTRKLTYFIFTKC 115 (176)
Q Consensus 82 --~L~~~L~l~~~~~L~~l~~--~~~~~~l~~l~~~~c 115 (176)
+| ++|+++++ .+..++. ......++.++++++
T Consensus 198 l~~L-~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 198 LSSL-QVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp CTTC-CEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS
T ss_pred CCCC-CEEECCCC-ccCccChhhccCcccCCEeECCCC
Confidence 56 66776654 3444322 112345666666554
No 102
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.00 E-value=1.8e-09 Score=91.79 Aligned_cols=106 Identities=19% Similarity=0.203 Sum_probs=67.7
Q ss_pred ccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccC-cccccccCCccceeeccccCCCCCCchh-hhc
Q 036960 5 QDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLP-ITISIKQISPLRTLELRNCNTLQSLPKL-LLP 81 (176)
Q Consensus 5 ~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP-~~~~~~~l~~L~~L~l~~cn~l~~lP~~-l~~ 81 (176)
..|.++++|++|++++|.+++++ ..|+.+++|++|++++|.++.+| ..|. ++++|++|++++ |.++.+|.. +..
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~-n~l~~l~~~~~~~ 122 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVE-TNLASLENFPIGH 122 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTT-SCCCCSTTCSCTT
T ss_pred hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc--Cccccccccccc-cccccCCCccccc
Confidence 35667777777777777777754 35777777777777777777664 4567 777777777777 777766642 222
Q ss_pred --CccceeeccCCcCCcc--ccccc-CCCCccEEEeeCC
Q 036960 82 --SYPEKVDTFMLESLSK--LFRII-TTRKLTYFIFTKC 115 (176)
Q Consensus 82 --~L~~~L~l~~~~~L~~--l~~~~-~~~~l~~l~~~~c 115 (176)
+| ++|+++++. +.. +|... ...+++.++++++
T Consensus 123 l~~L-~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 123 LKTL-KELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp CTTC-CEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTS
T ss_pred cccc-cEEecCCCc-cceecChhhhcccCCCCEEeCcCC
Confidence 66 777776652 332 23222 3456666666654
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.99 E-value=4.2e-10 Score=89.58 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=80.7
Q ss_pred ccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcc---cCc--ccccccCCccceeeccccCCCCCCchh--
Q 036960 7 IGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDN---LPI--TISIKQISPLRTLELRNCNTLQSLPKL-- 78 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~---lP~--~~~~~~l~~L~~L~l~~cn~l~~lP~~-- 78 (176)
+..+++|++|++++|.++.+| ..++.+++|++|++++|++.. ++. .+. .+++|++|++++ |.++.+|..
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~--~l~~L~~L~Ls~-N~l~~l~~~~~ 217 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH--KFPAIQNLALRN-TGMETPTGVCA 217 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT--SSCCCCSCBCCS-SCCCCHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh--cCCCCCEEECCC-CCCCchHHHHH
Confidence 456899999999999999865 588999999999999999763 432 346 899999999999 999887753
Q ss_pred -hh---cCccceeeccCCcCCccc-ccccCC----CCccEEEeeCCc
Q 036960 79 -LL---PSYPEKVDTFMLESLSKL-FRIITT----RKLTYFIFTKCL 116 (176)
Q Consensus 79 -l~---~~L~~~L~l~~~~~L~~l-~~~~~~----~~l~~l~~~~c~ 116 (176)
+. .+| ++|+++++ .+..+ |..... ..++.++++++.
T Consensus 218 ~l~~~l~~L-~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 218 ALAAAGVQP-HSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp HHHHHTCCC-SSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred HHHhcCCCC-CEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCC
Confidence 21 388 99999876 45554 333322 478888887653
No 104
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.98 E-value=3.1e-09 Score=89.38 Aligned_cols=78 Identities=23% Similarity=0.241 Sum_probs=42.4
Q ss_pred cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccc
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPE 85 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~ 85 (176)
.++.+++|++|++++|.++++| ++.+++|++|++++|+++.+| ++ ++++|++|++++ |.++.+|-.-..+| +
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~--~l~~L~~L~L~~-N~l~~l~~~~l~~L-~ 130 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT--PLTKLTYLNCDT-NKLTKLDVSQNPLL-T 130 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT--TCTTCCEEECCS-SCCSCCCCTTCTTC-C
T ss_pred hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC--CCCcCCEEECCC-CcCCeecCCCCCcC-C
Confidence 3555556666666666655554 555556666666666555553 55 556666666666 55555542111245 5
Q ss_pred eeeccC
Q 036960 86 KVDTFM 91 (176)
Q Consensus 86 ~L~l~~ 91 (176)
+|++++
T Consensus 131 ~L~l~~ 136 (457)
T 3bz5_A 131 YLNCAR 136 (457)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 555544
No 105
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.98 E-value=2.1e-09 Score=92.02 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=59.5
Q ss_pred cCccccCCCCCcEEeccCCCCcccc---ccccCCCCCcEEEeeCCCCcc-cCcc-cccccCCccceeeccccCCC-CCCc
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLP---ASIGSLSSLKRMNLVENKLDN-LPIT-ISIKQISPLRTLELRNCNTL-QSLP 76 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~-lP~~-~~~~~l~~L~~L~l~~cn~l-~~lP 76 (176)
+|..++.+++|++|++++|++++++ ..++.+++|++|++++|+++. +|.. +. .+++|+.|++++ |.+ ..+|
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--~l~~L~~L~l~~-n~l~~~~~ 445 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA--WAESILVLNLSS-NMLTGSVF 445 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC--CCTTCCEEECCS-SCCCGGGG
T ss_pred hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc--CcccCCEEECCC-CCCCcchh
Confidence 4556666777777777777766543 346667777777777777664 6654 44 555555555555 444 2333
Q ss_pred hhhhcCccceeeccCCcCCccccccc-CCCCccEEEeeC
Q 036960 77 KLLLPSYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTK 114 (176)
Q Consensus 77 ~~l~~~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~ 114 (176)
..++.+| ++|+++++ .++.+|... ....++.+++++
T Consensus 446 ~~l~~~L-~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 446 RCLPPKV-KVLDLHNN-RIMSIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp SSCCTTC-SEEECCSS-CCCCCCTTTTSSCCCSEEECCS
T ss_pred hhhcCcC-CEEECCCC-cCcccChhhcCCCCCCEEECCC
Confidence 3333355 66666554 455554322 233455555444
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.97 E-value=1.1e-09 Score=92.86 Aligned_cols=109 Identities=20% Similarity=0.168 Sum_probs=78.4
Q ss_pred CccccCCCCCcEEeccCCCCcc-cccccc-CCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960 4 LQDIGCLSLLKELNLCVNDFQR-LPASIG-SLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~-lp~~~~-~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
|..++.+++|++|++++|.+++ .|..+. .+++|++|++++|.|+.+|. .. .+++|+.|++++ |.++.+|..+..
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~--~l~~L~~L~Ls~-N~l~~~~~~~~~ 212 (487)
T 3oja_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QV--VFAKLKTLDLSS-NKLAFMGPEFQS 212 (487)
T ss_dssp GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CC--CCTTCCEEECCS-SCCCEECGGGGG
T ss_pred chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cc--cCCCCCEEECCC-CCCCCCCHhHcC
Confidence 4566777888888888888877 455554 67888888888888887753 44 578888888888 888888776553
Q ss_pred --CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCc
Q 036960 82 --SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKL 118 (176)
Q Consensus 82 --~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l 118 (176)
+| +.|+++++ .+..+|... ....++.++++++.-.
T Consensus 213 l~~L-~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 213 AAGV-TWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GTTC-SEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCc-cEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 77 88888775 566665443 3456778888776544
No 107
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.97 E-value=7.7e-10 Score=95.63 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=79.6
Q ss_pred cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcC
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPS 82 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~ 82 (176)
+|..++.+++|++|++++|.++++|..++.+++|++|++++|.++.+|..+. .+++|+.|++++ |.+..+|....++
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~ 346 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--QFDRLENLYLDH-NSIVTLKLSTHHT 346 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH--HHTTCSEEECCS-SCCCCCCCCTTCC
T ss_pred CHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccc--cCCCCCEEECCC-CCCCCcChhhcCC
Confidence 4778999999999999999999999999999999999999999999999999 999999999999 9999888665668
Q ss_pred ccceeeccCCc
Q 036960 83 YPEKVDTFMLE 93 (176)
Q Consensus 83 L~~~L~l~~~~ 93 (176)
| +.|++++++
T Consensus 347 L-~~L~l~~N~ 356 (597)
T 3oja_B 347 L-KNLTLSHND 356 (597)
T ss_dssp C-SEEECCSSC
T ss_pred C-CEEEeeCCC
Confidence 8 999998764
No 108
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.96 E-value=4.1e-09 Score=88.62 Aligned_cols=83 Identities=24% Similarity=0.247 Sum_probs=63.9
Q ss_pred ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccce
Q 036960 7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEK 86 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~~ 86 (176)
++.+++|++|++++|.++++| ++.+++|++|++++|+++.+| ++ .+++|+.|++++ |.++.+|-.-..+| ++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~--~l~~L~~L~l~~-N~l~~l~l~~l~~L-~~ 152 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VS--QNPLLTYLNCAR-NTLTEIDVSHNTQL-TE 152 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CT--TCTTCCEEECTT-SCCSCCCCTTCTTC-CE
T ss_pred cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CC--CCCcCCEEECCC-CccceeccccCCcC-CE
Confidence 678888999999999888885 888888999999999888876 77 888888888888 88877763323366 77
Q ss_pred eeccCCcCCcc
Q 036960 87 VDTFMLESLSK 97 (176)
Q Consensus 87 L~l~~~~~L~~ 97 (176)
|+++++..+..
T Consensus 153 L~l~~n~~~~~ 163 (457)
T 3bz5_A 153 LDCHLNKKITK 163 (457)
T ss_dssp EECTTCSCCCC
T ss_pred EECCCCCcccc
Confidence 77666543333
No 109
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.96 E-value=3.2e-09 Score=88.85 Aligned_cols=85 Identities=26% Similarity=0.355 Sum_probs=72.8
Q ss_pred ccCccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCchhh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLPKLL 79 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP~~l 79 (176)
++|..+. +++++|++++|.+++++ ..|..+++|++|++++|.++.+ |..|. ++++|++|++++ |.++.+|...
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~-n~l~~~~~~~ 99 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGLRS-NRLKLIPLGV 99 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCS-SCCCSCCTTS
T ss_pred cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEECCC-CcCCccCccc
Confidence 4676553 58999999999999974 5899999999999999999977 67799 999999999999 9999999765
Q ss_pred h---cCccceeeccCC
Q 036960 80 L---PSYPEKVDTFML 92 (176)
Q Consensus 80 ~---~~L~~~L~l~~~ 92 (176)
. .+| ++|+++++
T Consensus 100 ~~~l~~L-~~L~Ls~n 114 (477)
T 2id5_A 100 FTGLSNL-TKLDISEN 114 (477)
T ss_dssp STTCTTC-CEEECTTS
T ss_pred ccCCCCC-CEEECCCC
Confidence 3 278 88888765
No 110
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.95 E-value=1.5e-09 Score=86.63 Aligned_cols=108 Identities=20% Similarity=0.197 Sum_probs=74.1
Q ss_pred ccccCCCCCcEEeccCCCCccc-cccc-cCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960 5 QDIGCLSLLKELNLCVNDFQRL-PASI-GSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP- 81 (176)
Q Consensus 5 ~~l~~l~~L~~L~L~~n~l~~l-p~~~-~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~- 81 (176)
..++.+++|++|++++|.++.+ |..+ ..+++|++|++++|.|+.+|. .. .+++|+.|++++ |.++.+|..+..
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~--~l~~L~~L~Ls~-N~l~~l~~~~~~l 213 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QV--VFAKLKTLDLSS-NKLAFMGPEFQSA 213 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CC--CCTTCCEEECCS-SCCCEECGGGGGG
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-cc--ccccCCEEECCC-CcCCcchhhhccc
Confidence 3566677777777777777774 3344 367778888888888777743 34 577888888888 888887766543
Q ss_pred -CccceeeccCCcCCccccccc-CCCCccEEEeeCCcCc
Q 036960 82 -SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCLKL 118 (176)
Q Consensus 82 -~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~~l 118 (176)
+| ++|+++++ .+..++... ....++.++++++.-.
T Consensus 214 ~~L-~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 214 AGV-TWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TTC-SEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred Ccc-cEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 77 88888776 566665433 3456777877766543
No 111
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.95 E-value=3e-09 Score=85.35 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=89.8
Q ss_pred ccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Ccc
Q 036960 7 IGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SYP 84 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L~ 84 (176)
+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|. +. .+++|++|++++ |.++.+| .+.. +|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~--~l~~L~~L~L~~-n~i~~~~-~~~~l~~L- 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LS--NLVKLTNLYIGT-NKITDIS-ALQNLTNL- 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCS-SCCCCCG-GGTTCTTC-
T ss_pred chhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hh--cCCcCCEEEccC-CcccCch-HHcCCCcC-
Confidence 346789999999999999997 48999999999999999999987 88 999999999999 9999987 4543 88
Q ss_pred ceeeccCCcCCcccccccCCCCccEEEeeCCcCccc
Q 036960 85 EKVDTFMLESLSKLFRIITTRKLTYFIFTKCLKLNK 120 (176)
Q Consensus 85 ~~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c~~l~~ 120 (176)
++|+++++ .+..++......+++.+++++|..+..
T Consensus 113 ~~L~l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~ 147 (347)
T 4fmz_A 113 RELYLNED-NISDISPLANLTKMYSLNLGANHNLSD 147 (347)
T ss_dssp SEEECTTS-CCCCCGGGTTCTTCCEEECTTCTTCCC
T ss_pred CEEECcCC-cccCchhhccCCceeEEECCCCCCccc
Confidence 99999876 476776655677889999988865544
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.94 E-value=4.1e-09 Score=91.20 Aligned_cols=58 Identities=29% Similarity=0.517 Sum_probs=30.1
Q ss_pred CCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCch
Q 036960 11 SLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPK 77 (176)
Q Consensus 11 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~ 77 (176)
++|++|++++|.|+.+| ..+++|++|++++|+|+.+|. +. + +|+.|++++ |.++.+|.
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~--~--~L~~L~Ls~-N~l~~lp~ 137 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LP--A--SLKHLDVDN-NQLTMLPE 137 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CC--T--TCCEEECCS-SCCSCCCC
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hh--c--CCCEEECCC-CcCCCCCC
Confidence 45555666655555555 334555555555555555554 43 3 444444444 44444443
No 113
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.94 E-value=2.4e-09 Score=93.25 Aligned_cols=67 Identities=30% Similarity=0.391 Sum_probs=34.6
Q ss_pred ccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCc
Q 036960 7 IGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLP 76 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP 76 (176)
|+++++|++|++++|.++++ |..++.+++|++|++++|.++.+|. .|. ++++|++|++++ |.++.+|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~--~l~~L~~L~L~~-n~l~~~~ 113 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA--FCTNLTELHLMS-NSIQKIK 113 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCS-SCCCCCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhc--cCCCCCEEECCC-CccCccC
Confidence 44555555555555555553 3344555555555555555555544 245 555555555555 5554444
No 114
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.94 E-value=2.9e-09 Score=89.21 Aligned_cols=80 Identities=16% Similarity=0.320 Sum_probs=62.5
Q ss_pred cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc--Cc
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP--SY 83 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~--~L 83 (176)
.+..+++|++|++++|.++++|. ++.+++|++|++++|.++.++. +. ++++|++|++++ |.++.+|. +.. +|
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~L~~-n~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LA--NLTNLTGLTLFN-NQITDIDP-LKNLTNL 136 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCS-SCCCCCGG-GTTCTTC
T ss_pred chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hc--CCCCCCEEECCC-CCCCCChH-HcCCCCC
Confidence 36678888888888888888776 8888888888888888887766 77 888888888888 78887774 432 67
Q ss_pred cceeeccCC
Q 036960 84 PEKVDTFML 92 (176)
Q Consensus 84 ~~~L~l~~~ 92 (176)
++|+++++
T Consensus 137 -~~L~l~~n 144 (466)
T 1o6v_A 137 -NRLELSSN 144 (466)
T ss_dssp -SEEEEEEE
T ss_pred -CEEECCCC
Confidence 77777654
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.94 E-value=2.9e-09 Score=86.21 Aligned_cols=111 Identities=11% Similarity=0.195 Sum_probs=71.2
Q ss_pred ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCc-ccCc-ccccccCCccceeeccccCCCCCCchh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLD-NLPI-TISIKQISPLRTLELRNCNTLQSLPKL 78 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~-~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~ 78 (176)
+||..+ .+++++|+|++|+|+.+|. .|.++++|++|+|++|++. .+|. .|. ++++++.+...++|+++.+|.+
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~--~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC--SCTTCCEEEEEEETTCCEECTT
T ss_pred ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh--cchhhhhhhcccCCcccccCch
Confidence 466655 3578888999998888886 5788888999999888875 5665 366 7777766444433788777655
Q ss_pred hhc---CccceeeccCCcCCcccccccC--CCCccEEEeeCCcCc
Q 036960 79 LLP---SYPEKVDTFMLESLSKLFRIIT--TRKLTYFIFTKCLKL 118 (176)
Q Consensus 79 l~~---~L~~~L~l~~~~~L~~l~~~~~--~~~l~~l~~~~c~~l 118 (176)
... +| ++|+++++ .+..+++... ...+..+++.++..+
T Consensus 99 ~f~~l~~L-~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i 141 (350)
T 4ay9_X 99 AFQNLPNL-QYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINI 141 (350)
T ss_dssp SBCCCTTC-CEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTC
T ss_pred hhhhcccc-cccccccc-ccccCCchhhcccchhhhhhhcccccc
Confidence 433 56 77777654 4544433322 223344455444444
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.90 E-value=1.1e-08 Score=85.67 Aligned_cols=100 Identities=19% Similarity=0.323 Sum_probs=43.1
Q ss_pred cCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhh--cCccc
Q 036960 8 GCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLL--PSYPE 85 (176)
Q Consensus 8 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~--~~L~~ 85 (176)
..+++|++|++++|.++.+|. +..+++|++|++++|+++.++. +. .+++|+.|++++ |.+..++. +. .+| +
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~--~l~~L~~L~L~~-n~l~~~~~-~~~l~~L-~ 334 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-IS--NLKNLTYLTLYF-NNISDISP-VSSLTKL-Q 334 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GG--GCTTCSEEECCS-SCCSCCGG-GGGCTTC-C
T ss_pred hcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hc--CCCCCCEEECcC-CcCCCchh-hccCccC-C
Confidence 334444444444444444332 4444444444444444444332 33 444455555554 44444332 11 144 4
Q ss_pred eeeccCCcCCcccccccCCCCccEEEeeCC
Q 036960 86 KVDTFMLESLSKLFRIITTRKLTYFIFTKC 115 (176)
Q Consensus 86 ~L~l~~~~~L~~l~~~~~~~~l~~l~~~~c 115 (176)
.|+++++ .+..++.......++.+++++|
T Consensus 335 ~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 335 RLFFYNN-KVSDVSSLANLTNINWLSAGHN 363 (466)
T ss_dssp EEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred EeECCCC-ccCCchhhccCCCCCEEeCCCC
Confidence 5555444 3333333333344555555544
No 117
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.90 E-value=6e-09 Score=89.54 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=83.9
Q ss_pred ccCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCCCc-hh
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQSLP-KL 78 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~lP-~~ 78 (176)
++|..+. ..+++|++++|.|+++ |..|+.+++|++|++++|+++.+ |..|. ++++|++|++++ |.+..++ ..
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~-n~l~~~~~~~ 100 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ--SQHRLDTLVLTA-NPLIFMAETA 100 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTT-CCCSEECTTT
T ss_pred cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc--CccccCeeeCCC-CcccccChhh
Confidence 4676664 3799999999999996 56899999999999999999966 67799 999999999999 9987764 34
Q ss_pred hhc--CccceeeccCCcCCcccc--cccCCCCccEEEeeCCc
Q 036960 79 LLP--SYPEKVDTFMLESLSKLF--RIITTRKLTYFIFTKCL 116 (176)
Q Consensus 79 l~~--~L~~~L~l~~~~~L~~l~--~~~~~~~l~~l~~~~c~ 116 (176)
+.. +| ++|+++++ .+..++ ......+++.++++++.
T Consensus 101 ~~~l~~L-~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~ 140 (606)
T 3t6q_A 101 LSGPKAL-KHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNH 140 (606)
T ss_dssp TSSCTTC-CEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred hcccccc-cEeecccc-CcccCCcchhccCCcccEEECCCCc
Confidence 433 78 99999876 455542 12244567777776653
No 118
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.90 E-value=2.3e-09 Score=85.63 Aligned_cols=85 Identities=24% Similarity=0.220 Sum_probs=71.9
Q ss_pred Cccc-cCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc-
Q 036960 4 LQDI-GCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP- 81 (176)
Q Consensus 4 P~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~- 81 (176)
|..+ ..+++|++|++++|.++.+|. ...+++|++|++++|+++.+|..+. .+++|+.|++++ |.++.+|..+..
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~--~l~~L~~L~L~~-N~l~~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQ--SAAGVTWISLRN-NKLVLIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGG--GGTTCSEEECTT-SCCCEECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhc--ccCcccEEECcC-CcccchhhHhhcC
Confidence 3444 468999999999999999864 4459999999999999999998899 999999999999 999999976543
Q ss_pred -CccceeeccCCc
Q 036960 82 -SYPEKVDTFMLE 93 (176)
Q Consensus 82 -~L~~~L~l~~~~ 93 (176)
+| +.|+++++.
T Consensus 237 ~~L-~~L~l~~N~ 248 (317)
T 3o53_A 237 QNL-EHFDLRGNG 248 (317)
T ss_dssp TTC-CEEECTTCC
T ss_pred CCC-CEEEccCCC
Confidence 67 777777653
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.89 E-value=9.3e-09 Score=86.39 Aligned_cols=97 Identities=27% Similarity=0.378 Sum_probs=62.3
Q ss_pred cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccc
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPE 85 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~ 85 (176)
.++.+++|++|++++|.++++|... .+|++|++++|.++.+|. ++ .+++|+.|++++ |.++.+|. ...+| +
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~--~l~~L~~L~l~~-N~l~~l~~-~~~~L-~ 260 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQ--NLPFLTTIYADN-NLLKTLPD-LPPSL-E 260 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CT--TCTTCCEEECCS-SCCSSCCS-CCTTC-C
T ss_pred cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cC--CCCCCCEEECCC-CcCCcccc-ccccc-C
Confidence 4666777777777777777666432 467777777777777774 77 788888888888 88887774 33567 7
Q ss_pred eeeccCCcCCcccccccCCCCccEEEeeC
Q 036960 86 KVDTFMLESLSKLFRIITTRKLTYFIFTK 114 (176)
Q Consensus 86 ~L~l~~~~~L~~l~~~~~~~~l~~l~~~~ 114 (176)
+|+++++ .+..++.. ...++.+++++
T Consensus 261 ~L~l~~N-~l~~l~~~--~~~L~~L~ls~ 286 (454)
T 1jl5_A 261 ALNVRDN-YLTDLPEL--PQSLTFLDVSE 286 (454)
T ss_dssp EEECCSS-CCSCCCCC--CTTCCEEECCS
T ss_pred EEECCCC-cccccCcc--cCcCCEEECcC
Confidence 7777655 34444322 13344444443
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.89 E-value=7.2e-09 Score=89.69 Aligned_cols=77 Identities=34% Similarity=0.368 Sum_probs=39.2
Q ss_pred CCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhcCccceeeccC
Q 036960 12 LLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLPSYPEKVDTFM 91 (176)
Q Consensus 12 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~~~L~l~~ 91 (176)
+|++|++++|.|+++|. .+++|++|++++|+|+.+|. .+++|+.|++++ |.++.+|. +..+| ++|++++
T Consensus 121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~-N~L~~lp~-l~~~L-~~L~Ls~ 189 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRN-NQLTFLPE-LPESL-EALDVST 189 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCS-SCCSCCCC-CCTTC-CEEECCS
T ss_pred CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC-----cCCCcCEEECCC-CCCCCcch-hhCCC-CEEECcC
Confidence 34444444444444443 34445555555555554443 234566666666 66666664 44556 6666655
Q ss_pred CcCCccccc
Q 036960 92 LESLSKLFR 100 (176)
Q Consensus 92 ~~~L~~l~~ 100 (176)
+ .++.+|.
T Consensus 190 N-~L~~lp~ 197 (571)
T 3cvr_A 190 N-LLESLPA 197 (571)
T ss_dssp S-CCSSCCC
T ss_pred C-CCCchhh
Confidence 4 4555544
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.88 E-value=8.6e-09 Score=90.03 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=49.2
Q ss_pred ccCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
++|..+. ++|++|++++|.|+.+|. .+++|++|++++|+|+.+|. .+++|+.|++++ |.++.+|. ...
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~-N~l~~l~~-~l~ 121 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFS-NPLTHLPA-LPS 121 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECS-CCCCCCCC-CCT
T ss_pred ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcC-CcCCCCCC-CCC
Confidence 3555554 677777777777777775 45677777777777777765 345666666666 66666654 333
Q ss_pred CccceeeccCC
Q 036960 82 SYPEKVDTFML 92 (176)
Q Consensus 82 ~L~~~L~l~~~ 92 (176)
+| +.|+++++
T Consensus 122 ~L-~~L~L~~N 131 (622)
T 3g06_A 122 GL-CKLWIFGN 131 (622)
T ss_dssp TC-CEEECCSS
T ss_pred Cc-CEEECCCC
Confidence 55 55555443
No 122
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.88 E-value=5.8e-09 Score=88.70 Aligned_cols=85 Identities=31% Similarity=0.371 Sum_probs=70.5
Q ss_pred CccccCCCCCcEEeccCCCCcccc-ccccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCC--Cchhh
Q 036960 4 LQDIGCLSLLKELNLCVNDFQRLP-ASIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQS--LPKLL 79 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~--lP~~l 79 (176)
|..|+++++|++|++++|.++.+| ..|+.+++|++|++++|+++.+|. .++ ++++|++|++++ |.++. +|..+
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~--~l~~L~~L~L~~-n~l~~~~lp~~~ 145 (570)
T 2z63_A 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAH-NLIQSFKLPEYF 145 (570)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCT--TCTTCCEEECCS-SCCCCCCCCGGG
T ss_pred cccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccc--ccccccEEecCC-CccceecChhhh
Confidence 345788999999999999998865 578999999999999999998876 578 899999999999 88875 67766
Q ss_pred hc--CccceeeccCC
Q 036960 80 LP--SYPEKVDTFML 92 (176)
Q Consensus 80 ~~--~L~~~L~l~~~ 92 (176)
.. +| ++|+++++
T Consensus 146 ~~l~~L-~~L~l~~n 159 (570)
T 2z63_A 146 SNLTNL-EHLDLSSN 159 (570)
T ss_dssp GGCTTC-CEEECTTS
T ss_pred cccCCC-CEEeCcCC
Confidence 64 78 88888765
No 123
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.86 E-value=9.5e-09 Score=92.19 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=65.4
Q ss_pred CccccCCCCCcEEeccCCC-Cccc-cccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCC-Cchh-
Q 036960 4 LQDIGCLSLLKELNLCVND-FQRL-PASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQS-LPKL- 78 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~-l~~l-p~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~-lP~~- 78 (176)
|..|.++++|++|++++|. +..+ |..|+++++|++|++++|.|+.+ |..|. ++++|++|++++ |.+.. +|..
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~-n~l~~~~~~~~ 117 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ--GLFHLFELRLYF-CGLSDAVLKDG 117 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC--SCSSCCCEECTT-CCCSSCCSTTC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc--CCcccCEeeCcC-CCCCcccccCc
Confidence 4566677777777777773 3345 55677777777777777777754 56677 777777777777 66653 4432
Q ss_pred -hhc--CccceeeccCCcCCcccc---cccCCCCccEEEeeCC
Q 036960 79 -LLP--SYPEKVDTFMLESLSKLF---RIITTRKLTYFIFTKC 115 (176)
Q Consensus 79 -l~~--~L~~~L~l~~~~~L~~l~---~~~~~~~l~~l~~~~c 115 (176)
+.. +| ++|+++++. +..+. ......+++.++++++
T Consensus 118 ~~~~L~~L-~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 118 YFRNLKAL-TRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CCSSCSSC-CEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS
T ss_pred cccccCCC-CEEECCCCc-ccccccchhHhhCCCCCEEECCCC
Confidence 222 66 777776553 33331 1224456666666654
No 124
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.84 E-value=3.8e-09 Score=89.46 Aligned_cols=86 Identities=23% Similarity=0.206 Sum_probs=74.3
Q ss_pred cCcccc-CCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCchhhhc
Q 036960 3 ILQDIG-CLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPKLLLP 81 (176)
Q Consensus 3 lP~~l~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~ 81 (176)
+|..+. .+++|++|++++|.|+++|. ...+++|++|++++|.|+.+|..+. .+++|+.|++++ |.+..+|..+..
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~--~l~~L~~L~Ls~-N~l~~lp~~l~~ 235 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQ--SAAGVTWISLRN-NKLVLIEKALRF 235 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGG--GGTTCSEEECTT-SCCCEECTTCCC
T ss_pred ChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHc--CCCCccEEEecC-CcCcccchhhcc
Confidence 455665 79999999999999999864 4569999999999999999998899 999999999999 999999976653
Q ss_pred --CccceeeccCCc
Q 036960 82 --SYPEKVDTFMLE 93 (176)
Q Consensus 82 --~L~~~L~l~~~~ 93 (176)
+| +.|+++++.
T Consensus 236 l~~L-~~L~l~~N~ 248 (487)
T 3oja_A 236 SQNL-EHFDLRGNG 248 (487)
T ss_dssp CTTC-CEEECTTCC
T ss_pred CCCC-CEEEcCCCC
Confidence 77 888887764
No 125
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=1.3e-08 Score=81.86 Aligned_cols=97 Identities=12% Similarity=0.184 Sum_probs=79.5
Q ss_pred cEEeccCC-CCccccccccCCCCCcEEEeeC-CCCcccCc-ccccccCCccceeeccccCCCCCCchhhhc---Ccccee
Q 036960 14 KELNLCVN-DFQRLPASIGSLSSLKRMNLVE-NKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP---SYPEKV 87 (176)
Q Consensus 14 ~~L~L~~n-~l~~lp~~~~~l~~L~~L~l~~-n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~---~L~~~L 87 (176)
..++.+++ .|+.+|. +..+++|++|+|++ |.|+.+|. .|. ++++|+.|+|++ |.|+.+|+..+. +| ++|
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L-~~L 85 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVK-SGLRFVAPDAFHFTPRL-SRL 85 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCS-SCCCEECTTGGGSCSCC-CEE
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCC-CccceeCHHHhcCCcCC-CEE
Confidence 45788988 9999999 99999999999996 99998875 589 999999999999 999988865543 78 999
Q ss_pred eccCCcCCccccccc-CCCCccEEEeeCCc
Q 036960 88 DTFMLESLSKLFRII-TTRKLTYFIFTKCL 116 (176)
Q Consensus 88 ~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~ 116 (176)
+++++ .|..++... ....++.+.+.++.
T Consensus 86 ~l~~N-~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 86 NLSFN-ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp ECCSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred eCCCC-ccceeCHHHcccCCceEEEeeCCC
Confidence 99875 688776443 33458888887643
No 126
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.82 E-value=1.5e-08 Score=90.91 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=83.2
Q ss_pred ccCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCC-Cccc-CcccccccCCccceeeccccCCCCCC-ch
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENK-LDNL-PITISIKQISPLRTLELRNCNTLQSL-PK 77 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~-l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~l-P~ 77 (176)
.+|. -.+++++|+|++|.|+.+ |..+..+++|++|++++|. +..+ |..|. ++++|++|++++ |.++.+ |.
T Consensus 18 ~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--~L~~L~~L~Ls~-N~l~~~~p~ 91 (844)
T 3j0a_A 18 QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR--NLPNLRILDLGS-SKIYFLHPD 91 (844)
T ss_dssp CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS--SCTTCCEEECTT-CCCCEECTT
T ss_pred CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc--CCCCCCEEECCC-CcCcccCHh
Confidence 3565 457899999999999995 6799999999999999995 5577 66799 999999999999 999876 54
Q ss_pred hhhc--CccceeeccCCcCCcc-ccc---ccCCCCccEEEeeCCc
Q 036960 78 LLLP--SYPEKVDTFMLESLSK-LFR---IITTRKLTYFIFTKCL 116 (176)
Q Consensus 78 ~l~~--~L~~~L~l~~~~~L~~-l~~---~~~~~~l~~l~~~~c~ 116 (176)
.+.. +| ++|+++++. +.. ++. .....+++.++++++.
T Consensus 92 ~~~~l~~L-~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 92 AFQGLFHL-FELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp SSCSCSSC-CCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred HccCCccc-CEeeCcCCC-CCcccccCccccccCCCCEEECCCCc
Confidence 4543 78 999998874 443 322 2345677888776653
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.80 E-value=1.1e-10 Score=87.23 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=74.0
Q ss_pred cCccccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCCCCch--hhh
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQSLPK--LLL 80 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~~lP~--~l~ 80 (176)
+| .+..+++|++|++++|.++.+|..+..+++|++|++++|+++.+| .+. .+++|+.|++++ |.++.+|. .+.
T Consensus 63 l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~--~l~~L~~L~l~~-N~i~~~~~~~~l~ 137 (198)
T 1ds9_A 63 IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE--KLVNLRVLYMSN-NKITNWGEIDKLA 137 (198)
T ss_dssp CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH--HHHHSSEEEESE-EECCCHHHHHHHT
T ss_pred cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccc--cCCCCCEEECCC-CcCCchhHHHHHh
Confidence 56 778899999999999999999988888899999999999999987 688 899999999999 99998874 333
Q ss_pred c--CccceeeccCCc
Q 036960 81 P--SYPEKVDTFMLE 93 (176)
Q Consensus 81 ~--~L~~~L~l~~~~ 93 (176)
. +| ++|+++++.
T Consensus 138 ~l~~L-~~L~l~~N~ 151 (198)
T 1ds9_A 138 ALDKL-EDLLLAGNP 151 (198)
T ss_dssp TTTTC-SEEEECSCH
T ss_pred cCCCC-CEEEecCCc
Confidence 2 77 888887763
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.77 E-value=4.5e-08 Score=85.50 Aligned_cols=97 Identities=27% Similarity=0.296 Sum_probs=50.0
Q ss_pred CCCcEEeccCCCCccccccccC-----------------CCCCcEEEeeCCCCcccCcccccccCCccceeeccccCCCC
Q 036960 11 SLLKELNLCVNDFQRLPASIGS-----------------LSSLKRMNLVENKLDNLPITISIKQISPLRTLELRNCNTLQ 73 (176)
Q Consensus 11 ~~L~~L~L~~n~l~~lp~~~~~-----------------l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~~cn~l~ 73 (176)
++|+.|++++|.|+++|..+.. +++|++|++++|.|+.+| . .+++|+.|++++ |.++
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~--~l~~L~~L~Ls~-N~L~ 254 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---V--LPSELKELMVSG-NRLT 254 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---C--CCTTCCEEECCS-SCCS
T ss_pred CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---C--CCCcCcEEECCC-CCCC
Confidence 5555555555555555432211 134555555555555554 2 445566666666 5666
Q ss_pred CCchhhhcCccceeeccCCcCCccccccc-CCCCccEEEeeCCc
Q 036960 74 SLPKLLLPSYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTKCL 116 (176)
Q Consensus 74 ~lP~~l~~~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~c~ 116 (176)
.+|. ...+| +.|+++++ .+..+|... ...+++.++++++.
T Consensus 255 ~lp~-~~~~L-~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 255 SLPM-LPSGL-LSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCCC-CCTTC-CEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred cCCc-ccccC-cEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 6664 33355 66666554 455554322 33455666665544
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.72 E-value=5.9e-09 Score=83.15 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=51.3
Q ss_pred cccCCCCCcEEeccCCCCcc--ccccccCCCCCcEEEeeCCCCc-ccCcccccccCCccceeeccccCCCC--CCchhhh
Q 036960 6 DIGCLSLLKELNLCVNDFQR--LPASIGSLSSLKRMNLVENKLD-NLPITISIKQISPLRTLELRNCNTLQ--SLPKLLL 80 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~-~lP~~~~~~~l~~L~~L~l~~cn~l~--~lP~~l~ 80 (176)
.+..+++|++|++++|.++. +|..+..+++|++|++++|.++ ..|..+. .+++|+.|++++|..++ .+|..+.
T Consensus 88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh--cCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 34456666667776666654 5556666666666666666665 4555566 66666666666632454 2443222
Q ss_pred --cCccceeeccCCcCCc
Q 036960 81 --PSYPEKVDTFMLESLS 96 (176)
Q Consensus 81 --~~L~~~L~l~~~~~L~ 96 (176)
++| ++|++++|..+.
T Consensus 166 ~~~~L-~~L~l~~~~~l~ 182 (336)
T 2ast_B 166 SCSRL-DELNLSWCFDFT 182 (336)
T ss_dssp HCTTC-CEEECCCCTTCC
T ss_pred cCCCC-CEEcCCCCCCcC
Confidence 256 666666654443
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.68 E-value=5.5e-09 Score=83.33 Aligned_cols=106 Identities=22% Similarity=0.310 Sum_probs=45.5
Q ss_pred ccCCCCCcEEeccCC-CCcc--ccccccCCCCCcEEEeeCC-CCcc--cCcccccccCC-ccceeeccccC--CC--CCC
Q 036960 7 IGCLSLLKELNLCVN-DFQR--LPASIGSLSSLKRMNLVEN-KLDN--LPITISIKQIS-PLRTLELRNCN--TL--QSL 75 (176)
Q Consensus 7 l~~l~~L~~L~L~~n-~l~~--lp~~~~~l~~L~~L~l~~n-~l~~--lP~~~~~~~l~-~L~~L~l~~cn--~l--~~l 75 (176)
++.+++|++|++++| .++. +|..+..+++|++|++++| .++. +|..+. .++ +|+.|++++ | .+ ..+
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~l~~~L~~L~l~~-~~~~~~~~~l 214 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA--HVSETITQLNLSG-YRKNLQKSDL 214 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH--HSCTTCCEEECCS-CGGGSCHHHH
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH--hcccCCCEEEeCC-CcccCCHHHH
Confidence 344444444444444 3442 3333444444455555444 4442 333344 444 555555554 3 22 223
Q ss_pred chhhh--cCccceeeccCCcCCcc--cccccCCCCccEEEeeCCc
Q 036960 76 PKLLL--PSYPEKVDTFMLESLSK--LFRIITTRKLTYFIFTKCL 116 (176)
Q Consensus 76 P~~l~--~~L~~~L~l~~~~~L~~--l~~~~~~~~l~~l~~~~c~ 116 (176)
|..+. ++| ++|++++|..+.. ++......+++.+++++|.
T Consensus 215 ~~~~~~~~~L-~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 215 STLVRRCPNL-VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHHCTTC-SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHHHhhCCCC-CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 32221 145 5555555543221 1112233455566665554
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.56 E-value=1.6e-08 Score=82.56 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=56.0
Q ss_pred ccCCCCCcEEeccCCCCcc------ccccccCCCCCcEEEeeCCCC-----cccCcccccccCCccceeeccccCCCCC-
Q 036960 7 IGCLSLLKELNLCVNDFQR------LPASIGSLSSLKRMNLVENKL-----DNLPITISIKQISPLRTLELRNCNTLQS- 74 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~------lp~~~~~l~~L~~L~l~~n~l-----~~lP~~~~~~~l~~L~~L~l~~cn~l~~- 74 (176)
+..+++|++|++++|.++. +|..+..+++|++|++++|.+ ..+|..+. .+++|+.|++++ |.++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~--~~~~L~~L~L~~-n~i~~~ 259 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK--SWPNLRELGLND-CLLSAR 259 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG--GCTTCCEEECTT-CCCCHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc--cCCCcCEEECCC-CCCchh
Confidence 4445566666666666651 232555666666666666666 34555555 666666666666 55543
Q ss_pred ----Cchhh----hcCccceeeccCCcCCcc-----ccccc-C-CCCccEEEeeCCc
Q 036960 75 ----LPKLL----LPSYPEKVDTFMLESLSK-----LFRII-T-TRKLTYFIFTKCL 116 (176)
Q Consensus 75 ----lP~~l----~~~L~~~L~l~~~~~L~~-----l~~~~-~-~~~l~~l~~~~c~ 116 (176)
+|..+ ..+| ++|+++++ .+.. ++... . ...++.+++++|.
T Consensus 260 ~~~~l~~~l~~~~~~~L-~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGL-QTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHTCSSCCC-CEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hHHHHHHHHhhccCCCe-EEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 23333 2355 66666554 2333 33322 1 3556666665554
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.45 E-value=5.9e-08 Score=79.14 Aligned_cols=86 Identities=22% Similarity=0.224 Sum_probs=71.7
Q ss_pred cccCCCCCcEEeccCCCCc-----cccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCC-
Q 036960 6 DIGCLSLLKELNLCVNDFQ-----RLPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQS- 74 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~- 74 (176)
.+..+++|++|++++|.++ .+|..+..+++|++|++++|.|+. +|..+..+.+++|+.|++++ |.++.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~-n~i~~~ 289 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY-NEIELD 289 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS-SCCBHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcC-CcCCHH
Confidence 6788999999999999994 488889999999999999999984 46666300489999999999 99987
Q ss_pred ----Cchhhh---cCccceeeccCCc
Q 036960 75 ----LPKLLL---PSYPEKVDTFMLE 93 (176)
Q Consensus 75 ----lP~~l~---~~L~~~L~l~~~~ 93 (176)
+|..+. ++| ++|+++++.
T Consensus 290 g~~~l~~~l~~~l~~L-~~L~l~~N~ 314 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDL-LFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHCTTC-CEEECTTSB
T ss_pred HHHHHHHHHHhcCCCc-eEEEccCCc
Confidence 887762 478 999998763
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=6.1e-07 Score=71.77 Aligned_cols=95 Identities=19% Similarity=0.272 Sum_probs=69.7
Q ss_pred CCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccc-eeeccccCCCCCCchhhhcCccce
Q 036960 10 LSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLR-TLELRNCNTLQSLPKLLLPSYPEK 86 (176)
Q Consensus 10 l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~-~L~l~~cn~l~~lP~~l~~~L~~~ 86 (176)
+++|+.+++++|+++.+|. .|.++.+|+.+++.+| ++.++.. |. ++.+|+ .+++.+ .++.+++..+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~--~~~~L~~~l~l~~--~l~~I~~~aF------ 293 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS--NCGRLAGTLELPA--SVTAIEFGAF------ 293 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCEEEEECT--TCCEECTTTT------
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh--CChhccEEEEEcc--cceEEchhhh------
Confidence 7899999999999999887 6899999999999998 8888765 88 999999 999877 6777776555
Q ss_pred eeccCCcCCcccccccCCCCccEE---EeeCCcCccc
Q 036960 87 VDTFMLESLSKLFRIITTRKLTYF---IFTKCLKLNK 120 (176)
Q Consensus 87 L~l~~~~~L~~l~~~~~~~~l~~l---~~~~c~~l~~ 120 (176)
.+|.+|+.+ ....+.++.+ .|.+|.+|+.
T Consensus 294 ---~~c~~L~~l--~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 294 ---MGCDNLRYV--LATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp ---TTCTTEEEE--EECSSCCCEECTTTTCTTCCCCE
T ss_pred ---hCCccCCEE--EeCCCccCccchhhhcCCcchhh
Confidence 344445544 2323334333 3566666654
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.37 E-value=2.4e-07 Score=75.12 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=31.7
Q ss_pred CCCCcEEeccCCCCcccc-----ccccCCC-CCcEEEeeCCCCccc-CcccccccC-----CccceeeccccCCCCC
Q 036960 10 LSLLKELNLCVNDFQRLP-----ASIGSLS-SLKRMNLVENKLDNL-PITISIKQI-----SPLRTLELRNCNTLQS 74 (176)
Q Consensus 10 l~~L~~L~L~~n~l~~lp-----~~~~~l~-~L~~L~l~~n~l~~l-P~~~~~~~l-----~~L~~L~l~~cn~l~~ 74 (176)
.++|++|++++|.++..+ ..+..++ +|++|++++|.|+.. +..+. .+ ++|+.|++++ |.++.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--~~l~~~~~~L~~L~Ls~-n~l~~ 94 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV--QILAAIPANVTSLNLSG-NFLSY 94 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH--HHHHTSCTTCCEEECCS-SCGGG
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH--HHHhccCCCccEEECcC-CcCCh
Confidence 344666666666655543 3445555 566666666555533 22233 32 5555555555 55543
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.31 E-value=1.8e-07 Score=75.86 Aligned_cols=78 Identities=21% Similarity=0.281 Sum_probs=46.1
Q ss_pred CCCcEEeccCCCCcc-----ccccccCCC-CCcEEEeeCCCCcccCc-----ccccccC-CccceeeccccCCCCC----
Q 036960 11 SLLKELNLCVNDFQR-----LPASIGSLS-SLKRMNLVENKLDNLPI-----TISIKQI-SPLRTLELRNCNTLQS---- 74 (176)
Q Consensus 11 ~~L~~L~L~~n~l~~-----lp~~~~~l~-~L~~L~l~~n~l~~lP~-----~~~~~~l-~~L~~L~l~~cn~l~~---- 74 (176)
++|++|++++|.++. ++..+..+. +|++|++++|+|+..+. .+. .. ++|+.|++++ |.++.
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~-N~i~~~~~~ 214 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA--SIPASVTSLDLSA-NLLGLKSYA 214 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH--TSCTTCCEEECTT-SCGGGSCHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHH--hCCCCCCEEECCC-CCCChhHHH
Confidence 467777777777763 444445554 67777777777664432 223 33 4677777777 66655
Q ss_pred -Cchhhh---cCccceeeccCC
Q 036960 75 -LPKLLL---PSYPEKVDTFML 92 (176)
Q Consensus 75 -lP~~l~---~~L~~~L~l~~~ 92 (176)
++..+. .+| ++|+++++
T Consensus 215 ~l~~~l~~~~~~L-~~L~Ls~N 235 (362)
T 3goz_A 215 ELAYIFSSIPNHV-VSLNLCLN 235 (362)
T ss_dssp HHHHHHHHSCTTC-CEEECCSS
T ss_pred HHHHHHhcCCCCc-eEEECcCC
Confidence 444332 256 66776654
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=1.6e-06 Score=68.14 Aligned_cols=64 Identities=30% Similarity=0.365 Sum_probs=48.7
Q ss_pred CCCCCcEEeccCCCCcccc---ccccCCCCCcEEEeeCCCCcccCcccccccCC--ccceeeccccCCCC-CCc
Q 036960 9 CLSLLKELNLCVNDFQRLP---ASIGSLSSLKRMNLVENKLDNLPITISIKQIS--PLRTLELRNCNTLQ-SLP 76 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~--~L~~L~l~~cn~l~-~lP 76 (176)
++++|++|+|++|+|++++ ..+..+++|+.|+|++|+|+.+. .+. .+. +|+.|++++ |.+. .+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~--~l~~l~L~~L~L~~-Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELD--KIKGLKLEELWLDG-NSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGG--GGTTSCCSEEECTT-STTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhh--hcccCCcceEEccC-CcCccccC
Confidence 5778889999999888754 45678888999999999888763 344 444 888899988 8884 355
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=4.3e-06 Score=66.81 Aligned_cols=82 Identities=12% Similarity=0.117 Sum_probs=68.6
Q ss_pred cCc-cccCCCCCcEEeccCCCCccccc-cccCCCCCc-EEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchh
Q 036960 3 ILQ-DIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLK-RMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKL 78 (176)
Q Consensus 3 lP~-~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~-~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~ 78 (176)
||+ .|.++++|+.+++.+| ++.++. .|.++.+|+ .+++.+ .++.++. .|. ++++|+.+++++ |.++.++..
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~--~c~~L~~l~l~~-n~i~~I~~~ 315 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM--GCDNLRYVLATG-DKITTLGDE 315 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT--TCTTEEEEEECS-SCCCEECTT
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhh--CCccCCEEEeCC-CccCccchh
Confidence 444 3788999999999998 888877 799999999 999998 8888865 588 999999999999 999999976
Q ss_pred hhcCccceeeccCCcCCccc
Q 036960 79 LLPSYPEKVDTFMLESLSKL 98 (176)
Q Consensus 79 l~~~L~~~L~l~~~~~L~~l 98 (176)
.+ .+|++|+.+
T Consensus 316 aF---------~~~~~L~~l 326 (329)
T 3sb4_A 316 LF---------GNGVPSKLI 326 (329)
T ss_dssp TT---------CTTCCCCEE
T ss_pred hh---------cCCcchhhh
Confidence 66 355566544
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.10 E-value=9.3e-07 Score=73.18 Aligned_cols=67 Identities=24% Similarity=0.310 Sum_probs=39.2
Q ss_pred CccccCCCCCcEEeccCCCCcc-cccc-ccCCC----CCcEEEeeCCCCc-----ccCcccccccCCccceeeccccCCC
Q 036960 4 LQDIGCLSLLKELNLCVNDFQR-LPAS-IGSLS----SLKRMNLVENKLD-----NLPITISIKQISPLRTLELRNCNTL 72 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~-lp~~-~~~l~----~L~~L~l~~n~l~-----~lP~~~~~~~l~~L~~L~l~~cn~l 72 (176)
|..+..+++|++|++++|.++. .+.. ...+. +|++|++++|+++ .+|..+. .+++|+.|++++ |.+
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~-n~i 125 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR--TLPTLQELHLSD-NLL 125 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT--SCTTCCEEECCS-SBC
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc--cCCceeEEECCC-CcC
Confidence 3445556667777777666655 1222 22333 5677777777666 3455566 666777777776 655
Q ss_pred C
Q 036960 73 Q 73 (176)
Q Consensus 73 ~ 73 (176)
+
T Consensus 126 ~ 126 (461)
T 1z7x_W 126 G 126 (461)
T ss_dssp H
T ss_pred c
Confidence 3
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.08 E-value=7.4e-07 Score=73.78 Aligned_cols=65 Identities=23% Similarity=0.289 Sum_probs=34.2
Q ss_pred ccccCCCCCcEEeccCCCCccc------cccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCC
Q 036960 5 QDIGCLSLLKELNLCVNDFQRL------PASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTL 72 (176)
Q Consensus 5 ~~l~~l~~L~~L~L~~n~l~~l------p~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l 72 (176)
..+..+++|++|++++|.++.. +..+..+++|++|++++|.++. +|..+. .+++|+.|++++ |.+
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~-n~i 296 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR--AKESLKELSLAG-NEL 296 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH--HCTTCCEEECTT-CCC
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh--hCCCcceEECCC-CCC
Confidence 3344455566666666555442 1112245556666666665554 444455 556666666666 555
No 140
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=2.2e-05 Score=57.99 Aligned_cols=94 Identities=12% Similarity=0.243 Sum_probs=54.2
Q ss_pred ccccccCCCCCcEEEeeCCCCccc-CcccccccCCccceeeccccCCCCC-----Cchh--hhcCccceeeccCCcCCcc
Q 036960 26 LPASIGSLSSLKRMNLVENKLDNL-PITISIKQISPLRTLELRNCNTLQS-----LPKL--LLPSYPEKVDTFMLESLSK 97 (176)
Q Consensus 26 lp~~~~~l~~L~~L~l~~n~l~~l-P~~~~~~~l~~L~~L~l~~cn~l~~-----lP~~--l~~~L~~~L~l~~~~~L~~ 97 (176)
+|.....-..|+.||++++.|+.. -..+. ++++|+.|++++|..++. +... ..++| ++|++++|..++.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L-~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM-LEMEIISCGNVTD 129 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHC-CEEEEESCTTCCH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCC-CEEEcCCCCcCCH
Confidence 444332234577777777776632 12345 677777777777766642 1110 11246 7777777766653
Q ss_pred c--ccccCCCCccEEEeeCCcCccccc
Q 036960 98 L--FRIITTRKLTYFIFTKCLKLNKSG 122 (176)
Q Consensus 98 l--~~~~~~~~l~~l~~~~c~~l~~~~ 122 (176)
- .......+++.+++++|..+....
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCCHH
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCchH
Confidence 2 122235678888888888887643
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.72 E-value=1.6e-05 Score=65.01 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=30.8
Q ss_pred CCCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCC
Q 036960 10 LSLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQ 73 (176)
Q Consensus 10 l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~ 73 (176)
.++|++|+|++|.|+. ++..+...++|++|+|++|.|+. ++..+. ..++|+.|++++ |.++
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~--~~~~L~~L~Ls~-N~i~ 224 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD--RNRQLQELNVAY-NGAG 224 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG--GCSCCCEEECCS-SCCC
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh--cCCCcCeEECCC-CCCC
Confidence 3455555555555543 33333455555555555555542 223344 445555555555 5554
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.70 E-value=1.5e-05 Score=58.79 Aligned_cols=106 Identities=15% Similarity=0.162 Sum_probs=75.1
Q ss_pred cccCCCCCcEEeccCC-CCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCC
Q 036960 6 DIGCLSLLKELNLCVN-DFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQS 74 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~ 74 (176)
.+...++|++|+|++| .|.. +...+...++|++|+|++|.|.. +...+. ..+.|++|++++ |.++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~--~n~~L~~L~L~~-N~i~~ 107 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--VNNTLKSLNVES-NFISG 107 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--HCSSCCEEECCS-SCCCH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH--hCCCcCEEECcC-CcCCH
Confidence 3566789999999999 8875 45567778999999999999873 344455 668999999999 98864
Q ss_pred -----Cchhhhc--Cccceeec--cCCcCCcc-----ccc-ccCCCCccEEEeeCCc
Q 036960 75 -----LPKLLLP--SYPEKVDT--FMLESLSK-----LFR-IITTRKLTYFIFTKCL 116 (176)
Q Consensus 75 -----lP~~l~~--~L~~~L~l--~~~~~L~~-----l~~-~~~~~~l~~l~~~~c~ 116 (176)
+...+.. +| ++|++ +++ .+.. +.. ......++.++++.+.
T Consensus 108 ~g~~~l~~~L~~n~~L-~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSL-IELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSC-CEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCc-eEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3333332 78 89999 444 3432 111 1135678888887653
No 143
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.63 E-value=9.4e-05 Score=51.66 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=46.1
Q ss_pred cEEeccCCCCc--cccccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCC
Q 036960 14 KELNLCVNDFQ--RLPASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQ 73 (176)
Q Consensus 14 ~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~ 73 (176)
..++.+++.++ .+|..+. .+|++|+|++|+|+.+|.. |. .+++|+.|+|++ |.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~-NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGA-NPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCS-SCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhh--hccccCEEEecC-CCee
Confidence 47888999998 8886543 4699999999999999876 67 899999999999 8774
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.63 E-value=2.3e-05 Score=66.78 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=32.8
Q ss_pred CCCCCcEEeccCCCCccc-----cccccCCCCCcEEEeeCCCCc-----ccCcccccccCCccceeeccccCCCCCCc
Q 036960 9 CLSLLKELNLCVNDFQRL-----PASIGSLSSLKRMNLVENKLD-----NLPITISIKQISPLRTLELRNCNTLQSLP 76 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l~~l-----p~~~~~l~~L~~L~l~~n~l~-----~lP~~~~~~~l~~L~~L~l~~cn~l~~lP 76 (176)
.+++|++|++++|.+++. +..+..+++|++|++++|.++ .++..+. ++++|+.|++++ +.+..+|
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~--~~~~L~~L~L~~-~~~~~l~ 236 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR--NCRSLVSVKVGD-FEILELV 236 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH--HCTTCCEEECSS-CBGGGGH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh--hCCCCcEEeccC-ccHHHHH
Confidence 456666666666654332 222344555566666555554 2222334 455555555555 4444444
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.62 E-value=6.6e-05 Score=55.38 Aligned_cols=92 Identities=9% Similarity=0.108 Sum_probs=65.6
Q ss_pred cCccccCCCCCcEEeccCCCCccc-cccccCCCCCcEEEeeCCC-Cccc-CcccccccC----CccceeeccccCCCCC-
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRL-PASIGSLSSLKRMNLVENK-LDNL-PITISIKQI----SPLRTLELRNCNTLQS- 74 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~-l~~l-P~~~~~~~l----~~L~~L~l~~cn~l~~- 74 (176)
+|.....-..|+.|+++++.|+.. -..+..+++|+.|+|++|. |+.- =..+. .+ ++|+.|++++|.+++.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~--~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS--QLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH--TCHHHHHHCCEEEEESCTTCCHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH--hcccccCCCCEEEcCCCCcCCHH
Confidence 455433334699999999998772 1357899999999999995 7731 12244 43 4799999999988863
Q ss_pred -Cchhhh--cCccceeeccCCcCCccc
Q 036960 75 -LPKLLL--PSYPEKVDTFMLESLSKL 98 (176)
Q Consensus 75 -lP~~l~--~~L~~~L~l~~~~~L~~l 98 (176)
+- .+. ++| ++|++++|+.++..
T Consensus 131 Gl~-~L~~~~~L-~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 131 GII-ALHHFRNL-KYLFLSDLPGVKEK 155 (176)
T ss_dssp HHH-HGGGCTTC-CEEEEESCTTCCCH
T ss_pred HHH-HHhcCCCC-CEEECCCCCCCCch
Confidence 21 122 378 99999999887753
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.56 E-value=5.2e-05 Score=55.84 Aligned_cols=82 Identities=10% Similarity=0.104 Sum_probs=47.1
Q ss_pred cccccCCCCCcEEEeeCC-CCcc-----cCcccccccCCccceeeccccCCCCC-----Cchhhh--cCccceeeccCCc
Q 036960 27 PASIGSLSSLKRMNLVEN-KLDN-----LPITISIKQISPLRTLELRNCNTLQS-----LPKLLL--PSYPEKVDTFMLE 93 (176)
Q Consensus 27 p~~~~~l~~L~~L~l~~n-~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~-----lP~~l~--~~L~~~L~l~~~~ 93 (176)
...+...++|++|++++| .|.. +...+. ..++|+.|++++ |.++. +...+. .+| ++|+++++
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~--~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L-~~L~L~~N- 103 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK--TNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTL-KSLNVESN- 103 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT--TCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSC-CEEECCSS-
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH--hCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCc-CEEECcCC-
Confidence 334566777888888887 6652 333455 567788888888 77643 222222 267 77777665
Q ss_pred CCcc-----ccc-ccCCCCccEEEee
Q 036960 94 SLSK-----LFR-IITTRKLTYFIFT 113 (176)
Q Consensus 94 ~L~~-----l~~-~~~~~~l~~l~~~ 113 (176)
.+.. +.. ......++.++++
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~ 129 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRID 129 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECC
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEec
Confidence 2332 111 1234567777773
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.52 E-value=2.4e-05 Score=63.95 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=55.8
Q ss_pred CccccCCCCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCC
Q 036960 4 LQDIGCLSLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQ 73 (176)
Q Consensus 4 P~~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~ 73 (176)
+..+...++|++|+|++|.|+. ++..+...++|++|++++|.|+. ++..+. ..++|++|++++ |.++
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~--~~~~L~~L~Ls~-N~i~ 252 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR--EHPSLELLHLYF-NELS 252 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH--HCSSCCEEECTT-SSCC
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH--hCCCCCEEeccC-CCCC
Confidence 3445678899999999999986 45567788899999999999984 344455 678999999999 9886
Q ss_pred CC
Q 036960 74 SL 75 (176)
Q Consensus 74 ~l 75 (176)
..
T Consensus 253 ~~ 254 (372)
T 3un9_A 253 SE 254 (372)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.49 E-value=0.00033 Score=57.81 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=43.0
Q ss_pred cccCCCCCcEEeccCCCCccccccccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchh
Q 036960 6 DIGCLSLLKELNLCVNDFQRLPASIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKL 78 (176)
Q Consensus 6 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~ 78 (176)
.|.++++|+.+++.+|+++.+|...-...+|+.+.+.. .++.++.. |. ++++|+.+.+.. + ++.++..
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~--~~~~L~~l~l~~-~-l~~I~~~ 243 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFL--KTSQLKTIEIPE-N-VSTIGQE 243 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTT--TCTTCCCEECCT-T-CCEECTT
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhh--CCCCCCEEecCC-C-ccCcccc
Confidence 35667777777777777777766443456777777763 36666543 66 677777777765 3 4444443
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.44 E-value=0.00013 Score=62.14 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=32.2
Q ss_pred cCCCCCcEEeccCCCCc-----cccccccCCCCCcEEEeeCCCCcccCcccccccCCccceeecc
Q 036960 8 GCLSLLKELNLCVNDFQ-----RLPASIGSLSSLKRMNLVENKLDNLPITISIKQISPLRTLELR 67 (176)
Q Consensus 8 ~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~n~l~~lP~~~~~~~l~~L~~L~l~ 67 (176)
..+++|++|++++|.++ .++..+..+++|++|++++|.+..+|..+. .+++|+.|+++
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~--~~~~L~~L~l~ 251 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK--AAANLEEFCGG 251 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH--HCTTCCEEEEC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh--hhhHHHhhccc
Confidence 34566666666666664 134444556666666666666555554444 44444444443
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.42 E-value=6.7e-05 Score=58.90 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=47.9
Q ss_pred cCccccCCCCCcEEeccCCCCccccccccCCC--CCcEEEeeCCCCc-ccCc-------ccccccCCccceeec
Q 036960 3 ILQDIGCLSLLKELNLCVNDFQRLPASIGSLS--SLKRMNLVENKLD-NLPI-------TISIKQISPLRTLEL 66 (176)
Q Consensus 3 lP~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~--~L~~L~l~~n~l~-~lP~-------~~~~~~l~~L~~L~l 66 (176)
+|..+..+++|+.|+|++|+|+++. .+..+. +|++|++++|.+. .+|. .+. .+++|+.||=
T Consensus 188 l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~--~~P~L~~LDg 258 (267)
T 3rw6_A 188 MSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE--RFPKLLRLDG 258 (267)
T ss_dssp GTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH--HCTTCCEESS
T ss_pred chhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHH--HCcccCeECC
Confidence 4556678999999999999999873 455555 9999999999998 5663 256 7888888763
No 151
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.42 E-value=2.7e-05 Score=66.28 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=57.7
Q ss_pred CCCCCcEEeccCCCCcc-cccccc-CCCCCcEEEeeCC-CCcc--cCcccccccCCccceeeccccCCCCCCc-hhh---
Q 036960 9 CLSLLKELNLCVNDFQR-LPASIG-SLSSLKRMNLVEN-KLDN--LPITISIKQISPLRTLELRNCNTLQSLP-KLL--- 79 (176)
Q Consensus 9 ~l~~L~~L~L~~n~l~~-lp~~~~-~l~~L~~L~l~~n-~l~~--lP~~~~~~~l~~L~~L~l~~cn~l~~lP-~~l--- 79 (176)
.+++|++|++++|.++. .+..+. .+++|++|++++| .++. ++..+. ++++|++|++++ |.++... ..+
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~--~~~~L~~L~L~~-~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA--TCRNLKELDLRE-SDVDDVSGHWLSHF 179 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHH--HCTTCCEEECTT-CEEECCCGGGGGGS
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHH--hCCCCCEEeCcC-CccCCcchHHHHHH
Confidence 45677777777777665 333443 5677777777777 4553 444455 677777787777 4443211 111
Q ss_pred ---hcCccceeeccCCc-CCc--ccccc-cCCCCccEEEeeCCc
Q 036960 80 ---LPSYPEKVDTFMLE-SLS--KLFRI-ITTRKLTYFIFTKCL 116 (176)
Q Consensus 80 ---~~~L~~~L~l~~~~-~L~--~l~~~-~~~~~l~~l~~~~c~ 116 (176)
..+| ++|+++++. .+. .+... ....+++.+.+.+|.
T Consensus 180 ~~~~~~L-~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 180 PDTYTSL-VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp CTTCCCC-CEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred hhcCCcC-cEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 1256 777776653 110 01000 123566777777663
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.30 E-value=0.0001 Score=62.69 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=66.8
Q ss_pred CCCCCcEEeccCC-CCcc--ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCCCch---
Q 036960 9 CLSLLKELNLCVN-DFQR--LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQSLPK--- 77 (176)
Q Consensus 9 ~l~~L~~L~L~~n-~l~~--lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~lP~--- 77 (176)
.+++|++|++++| .++. ++..+..+++|++|++++|.++. ++.... .+++|+.|++++ +. ..++.
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~~~L~~L~l~~-~~-~~~~~~~l 203 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD--TYTSLVSLNISC-LA-SEVSFSAL 203 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT--TCCCCCEEECTT-CC-SCCCHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh--cCCcCcEEEecc-cC-CcCCHHHH
Confidence 5789999999999 6666 66666689999999999998663 333344 677999999998 44 33321
Q ss_pred -hh---hcCccceeeccCCcCCccccccc-CCCCccEEEee
Q 036960 78 -LL---LPSYPEKVDTFMLESLSKLFRII-TTRKLTYFIFT 113 (176)
Q Consensus 78 -~l---~~~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~ 113 (176)
.+ .++| ++|++.+|..+..++... ....++.+.+.
T Consensus 204 ~~l~~~~~~L-~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 204 ERLVTRCPNL-KSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp HHHHHHCTTC-CEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred HHHHHhCCCC-cEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 11 1478 899998875554443222 23455666543
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.95 E-value=0.00099 Score=46.35 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=36.3
Q ss_pred ccCccccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCc
Q 036960 2 EILQDIGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLD 47 (176)
Q Consensus 2 ~lP~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~ 47 (176)
++|..+ -.+|++|+|++|+|+.+|. .|..+++|++|+|++|.+.
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 455443 2379999999999999987 5788999999999999775
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.83 E-value=0.00079 Score=54.86 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=17.4
Q ss_pred cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeecc
Q 036960 29 SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELR 67 (176)
Q Consensus 29 ~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~ 67 (176)
.+..+.+|+.+.+..+ ++.+++. |. ++.+|+.+++.
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~--~c~~L~~i~lp 328 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFE--SCTSLVSIDLP 328 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTT--TCTTCCEECCC
T ss_pred cccccccccccccccc-cceechhhhc--CCCCCCEEEeC
Confidence 3444555555555432 4444332 44 55555555553
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.71 E-value=0.003 Score=52.00 Aligned_cols=96 Identities=9% Similarity=0.104 Sum_probs=60.6
Q ss_pred CCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCc-----ccCc-ccccccCCccceeeccccCCCCCCchhhhc--
Q 036960 11 SLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLD-----NLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLP-- 81 (176)
Q Consensus 11 ~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~-----~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~-- 81 (176)
.+|+.+.+ .+.++.++. .|.++++|+.+++.+|.+. .++. .|. ++++|+.+.+.+ .++.++...+.
T Consensus 248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~--~c~~L~~l~l~~--~i~~I~~~aF~~c 322 (401)
T 4fdw_A 248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE--GCPKLARFEIPE--SIRILGQGLLGGN 322 (401)
T ss_dssp CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT--TCTTCCEECCCT--TCCEECTTTTTTC
T ss_pred CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh--CCccCCeEEeCC--ceEEEhhhhhcCC
Confidence 67888888 456777755 7888888888888887765 5654 477 888888888875 37777765553
Q ss_pred -CccceeeccCCcCCccccccc-CCCCccEEEeeC
Q 036960 82 -SYPEKVDTFMLESLSKLFRII-TTRKLTYFIFTK 114 (176)
Q Consensus 82 -~L~~~L~l~~~~~L~~l~~~~-~~~~l~~l~~~~ 114 (176)
+| +.+.+.+ +++.+.... ....++.+.+.+
T Consensus 323 ~~L-~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~ 354 (401)
T 4fdw_A 323 RKV-TQLTIPA--NVTQINFSAFNNTGIKEVKVEG 354 (401)
T ss_dssp CSC-CEEEECT--TCCEECTTSSSSSCCCEEEECC
T ss_pred CCc-cEEEECc--cccEEcHHhCCCCCCCEEEEcC
Confidence 45 5555532 244442211 222555555543
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.58 E-value=0.0037 Score=50.38 Aligned_cols=69 Identities=19% Similarity=0.307 Sum_probs=44.0
Q ss_pred ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh
Q 036960 7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
+.+...|+.+.+..+ ++.+.. .+.++.+|+.+.+.. .++.++.. |. ++.+|+.+.+.+ +.++.+++..+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~--~c~~L~~i~l~~-~~i~~I~~~aF 306 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCS--GCSNLTKVVMDN-SAIETLEPRVF 306 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTT--TCTTCCEEEECC-TTCCEECTTTT
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccc--cccccccccccc-cccceehhhhh
Confidence 445667777777654 555544 566677777777754 35666543 56 777777777776 66776665544
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.52 E-value=0.0038 Score=50.27 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=15.1
Q ss_pred ccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeec
Q 036960 30 IGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLEL 66 (176)
Q Consensus 30 ~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l 66 (176)
|.++.+|+.+.+.++.++.+++. |. ++.+|+.+.+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~--~c~~L~~i~l 317 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFM--DCVKLSSVTL 317 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTT--TCTTCCEEEC
T ss_pred cccccccccccccccccceehhhhhc--CCCCCCEEEc
Confidence 34444444444444444444332 33 4444444444
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.37 E-value=0.0011 Score=54.07 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=54.5
Q ss_pred CCCCCcEEeccC--CC------Cccccccc--cCCCCCcEEEeeCCCCcc-cCccc---ccccCCccceeeccccCCCCC
Q 036960 9 CLSLLKELNLCV--ND------FQRLPASI--GSLSSLKRMNLVENKLDN-LPITI---SIKQISPLRTLELRNCNTLQS 74 (176)
Q Consensus 9 ~l~~L~~L~L~~--n~------l~~lp~~~--~~l~~L~~L~l~~n~l~~-lP~~~---~~~~l~~L~~L~l~~cn~l~~ 74 (176)
.+++|+.|+|+. |. +..+...+ ..+++|++|++.+|.+.. .+..+ . .+++|++|+++. |.++.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~--~~~~L~~LdLs~-n~L~d 293 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD--ILPQLETMDISA-GVLTD 293 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS--SGGGCSEEECCS-SCCBH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc--cCCCCCEEECCC-CCCCh
Confidence 689999999863 11 22232223 357899999999999872 32222 3 578999999998 88865
Q ss_pred -----Cchhhh--cCccceeeccCC
Q 036960 75 -----LPKLLL--PSYPEKVDTFML 92 (176)
Q Consensus 75 -----lP~~l~--~~L~~~L~l~~~ 92 (176)
++..+. .+| +.|+++++
T Consensus 294 ~G~~~L~~~L~~l~~L-~~L~L~~n 317 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHL-KFINMKYN 317 (362)
T ss_dssp HHHHHHHTTHHHHTTC-SEEECCSB
T ss_pred HHHHHHHhhcccCCcc-eEEECCCC
Confidence 343322 378 88998776
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.32 E-value=0.0061 Score=49.52 Aligned_cols=68 Identities=7% Similarity=0.223 Sum_probs=46.4
Q ss_pred ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCcc-cccccCCccceeeccccCCCCCCchhhh
Q 036960 7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPIT-ISIKQISPLRTLELRNCNTLQSLPKLLL 80 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~~-~~~~~l~~L~~L~l~~cn~l~~lP~~l~ 80 (176)
|.++..|+.+.+.++. +.+.. .+.++..|+.+.+. +.++.++.. |. ++.+|+.+.+.. + ++.+.+..+
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~--~c~~L~~i~lp~-~-v~~I~~~aF 330 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFA--GCISLKSIDIPE-G-ITQILDDAF 330 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTT--TCTTCCEEECCT-T-CCEECTTTT
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeec--CCCCcCEEEeCC-c-ccEehHhHh
Confidence 5567778888876543 33433 67778888888885 557777664 67 788888888865 3 666665444
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.06 E-value=0.011 Score=47.94 Aligned_cols=46 Identities=13% Similarity=0.290 Sum_probs=21.5
Q ss_pred cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhh
Q 036960 29 SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLL 79 (176)
Q Consensus 29 ~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l 79 (176)
.|.++.+|+.+.+..+. ..++. .|. ++.+|+.+.+. +.++.+++..
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~--~c~~L~~i~l~--~~i~~I~~~a 306 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFM--NCPALQDIEFS--SRITELPESV 306 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTT--TCTTCCEEECC--TTCCEECTTT
T ss_pred eeeecccccEEeccccc-ceecCcccc--cccccccccCC--CcccccCcee
Confidence 34555556666554332 22332 244 55556555553 2344444433
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.01 E-value=0.0045 Score=50.38 Aligned_cols=104 Identities=17% Similarity=0.248 Sum_probs=64.8
Q ss_pred CCCCcEEeccCCCCcc-ccccc--cCCCCCcEEEeeCC--C------CcccCcccccccCCccceeeccccCCCCC-Cch
Q 036960 10 LSLLKELNLCVNDFQR-LPASI--GSLSSLKRMNLVEN--K------LDNLPITISIKQISPLRTLELRNCNTLQS-LPK 77 (176)
Q Consensus 10 l~~L~~L~L~~n~l~~-lp~~~--~~l~~L~~L~l~~n--~------l~~lP~~~~~~~l~~L~~L~l~~cn~l~~-lP~ 77 (176)
+++|+.|++..+.++. ....+ ..+++|+.|+|+.+ . +..+...+....+++|+.|++.+ +.++. .+.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~-~~i~~~~~~ 270 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD-AEEQNVVVE 270 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES-CTTHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC-CCCchHHHH
Confidence 7899999999988765 21233 37899999999632 1 22222222101578999999999 66642 222
Q ss_pred hh-----hcCccceeeccCCcCCcc-----cccc-cCCCCccEEEeeCCc
Q 036960 78 LL-----LPSYPEKVDTFMLESLSK-----LFRI-ITTRKLTYFIFTKCL 116 (176)
Q Consensus 78 ~l-----~~~L~~~L~l~~~~~L~~-----l~~~-~~~~~l~~l~~~~c~ 116 (176)
.+ .++| ++|+++.+ .+.. +... .....++.++++.|.
T Consensus 271 ~la~a~~~~~L-~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 271 MFLESDILPQL-ETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHCSSGGGC-SEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHhCccCCCC-CEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 22 2378 99999654 4554 2111 134678888887763
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.15 E-value=0.059 Score=43.61 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=68.2
Q ss_pred ccCCCCCcEEeccCCCCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccccCCCCCCchhhhcCcc
Q 036960 7 IGCLSLLKELNLCVNDFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRNCNTLQSLPKLLLPSYP 84 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~cn~l~~lP~~l~~~L~ 84 (176)
+..+.+|+.+.+.++ ++.++. .|.++.+|+.+++.. .++.++. .|. ++.+|+.+.+.. + ++.++...+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~--~c~~L~~i~lp~-~-l~~I~~~aF---- 362 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFR--GCTSLSNINFPL-S-LRKIGANAF---- 362 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT--TCTTCCEECCCT-T-CCEECTTTB----
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhcc--CCCCCCEEEECc-c-ccEehHHHh----
Confidence 567889999998765 777766 688999999999975 4888865 488 999999999977 5 777776555
Q ss_pred ceeeccCCcCCccc--ccccCCCCccEEEeeCCcCccc
Q 036960 85 EKVDTFMLESLSKL--FRIITTRKLTYFIFTKCLKLNK 120 (176)
Q Consensus 85 ~~L~l~~~~~L~~l--~~~~~~~~l~~l~~~~c~~l~~ 120 (176)
.+|.+|+.+ |+.. ... ...|.+|.+|+.
T Consensus 363 -----~~C~~L~~i~lp~~~--~~~-~~~F~~c~~L~~ 392 (394)
T 4fs7_A 363 -----QGCINLKKVELPKRL--EQY-RYDFEDTTKFKW 392 (394)
T ss_dssp -----TTCTTCCEEEEEGGG--GGG-GGGBCTTCEEEE
T ss_pred -----hCCCCCCEEEECCCC--EEh-hheecCCCCCcE
Confidence 355566554 1111 111 125778877754
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.57 E-value=0.044 Score=40.82 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=56.8
Q ss_pred cCCCCCcEEeccCC-CCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccccCCCCCC-
Q 036960 8 GCLSLLKELNLCVN-DFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRNCNTLQSL- 75 (176)
Q Consensus 8 ~~l~~L~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~cn~l~~l- 75 (176)
..-+.|++|+|++| .|.. +-+.+..-+.|+.|+|++|+|.. |-+.+. .-+.|+.|+|+. |.++.-
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~--~N~tL~~L~L~~-N~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE--TSPSLRVLNVES-NFLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH--HCSSCCEEECCS-SBCCHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh--cCCccCeEecCC-CcCCHHH
Confidence 34467999999986 7764 44567777899999999999883 233344 457899999999 998631
Q ss_pred ----chhhh--cCccceeeccCC
Q 036960 76 ----PKLLL--PSYPEKVDTFML 92 (176)
Q Consensus 76 ----P~~l~--~~L~~~L~l~~~ 92 (176)
-+.+. ..| ++|+++++
T Consensus 115 a~ala~aL~~N~tL-~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSI-VEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCC-SEEECCCC
T ss_pred HHHHHHHHhhCCce-eEEECCCC
Confidence 11121 267 78888654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.83 E-value=0.11 Score=38.72 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=45.3
Q ss_pred ccCCCCCcEEeccCCCCcc-----ccccccCCCCCcEEEeeCCCCcc-----cCcccccccCCccceeeccc
Q 036960 7 IGCLSLLKELNLCVNDFQR-----LPASIGSLSSLKRMNLVENKLDN-----LPITISIKQISPLRTLELRN 68 (176)
Q Consensus 7 l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----lP~~~~~~~l~~L~~L~l~~ 68 (176)
+..=+.|+.|+|++|.|.. +-+.+..-+.|++|+|++|.|.. +-+.+. .-+.|+.|++++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~--~N~tL~~L~L~n 135 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL--VTQSIVEFKADN 135 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT--TTCCCSEEECCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHh--hCCceeEEECCC
Confidence 3445689999999999986 33345566889999999999883 233444 456799999987
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.24 E-value=43 Score=21.37 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=27.1
Q ss_pred CCccccc-cccCCCCCcEEEeeCCCCcccCc-ccccccCCccceeeccc
Q 036960 22 DFQRLPA-SIGSLSSLKRMNLVENKLDNLPI-TISIKQISPLRTLELRN 68 (176)
Q Consensus 22 ~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP~-~~~~~~l~~L~~L~l~~ 68 (176)
.++.+.. .|.++.+|+.+.+..+ ++.+.. .|. ++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~--~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFS--GCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSST--TCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHh--ccCCccEEEEcC
Confidence 4455444 5667777777777653 455543 366 777777777665
Done!