Query 036963
Match_columns 194
No_of_seqs 175 out of 1124
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 11:47:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.5E-24 5.2E-29 152.6 5.6 62 5-66 1-63 (63)
2 3igm_B PF14_0633 protein; AP2 92.6 0.065 2.2E-06 39.0 2.5 26 2-27 3-29 (77)
3 1u3e_M HNH homing endonuclease 83.2 0.22 7.6E-06 39.4 -0.1 37 8-47 110-146 (174)
4 1z1b_A Integrase; protein-DNA 80.6 1.7 5.9E-05 35.8 4.4 42 8-53 14-55 (356)
5 3jtz_A Integrase; four strande 76.3 5 0.00017 28.8 5.3 43 11-53 29-75 (88)
6 3ju0_A Phage integrase; four s 64.1 12 0.0004 27.9 5.1 43 11-53 29-75 (108)
7 1x60_A Sporulation-specific N- 60.4 6 0.00021 26.7 2.7 33 19-51 36-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 55.1 11 0.00039 25.6 3.4 33 19-51 36-68 (81)
9 3iot_A Maltose-binding protein 48.7 2.2 7.4E-05 37.1 -1.5 16 38-53 356-371 (449)
10 2ftc_I Mitochondrial ribosomal 40.3 38 0.0013 25.7 4.5 36 17-54 79-114 (118)
11 3eik_A Tata-box-binding protei 34.5 63 0.0021 27.1 5.4 56 4-62 74-130 (218)
12 1b69_A Protein (integrase); in 31.5 47 0.0016 23.3 3.5 30 4-33 9-39 (69)
13 3r8s_M 50S ribosomal protein L 27.7 61 0.0021 25.2 4.0 36 17-55 91-126 (136)
14 1kcq_A Gelsolin, brevin, ADF, 23.7 99 0.0034 21.9 4.2 36 17-52 28-63 (104)
15 1ffk_F Ribosomal protein L10E; 22.5 90 0.0031 25.0 4.1 37 17-56 110-146 (157)
16 1svq_A Severin; actin-binding; 20.5 1E+02 0.0035 22.4 3.8 34 19-52 40-73 (114)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.90 E-value=1.5e-24 Score=152.58 Aligned_cols=62 Identities=79% Similarity=1.322 Sum_probs=57.6
Q ss_pred CceeeEEECCCCcEEEEEeCCCC-CcEEecccccCHHHHHHHHHHHHHHhcCCCCCCCCChhh
Q 036963 5 RHYRGVRQRPWGKWAAEIRDPKK-AARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERV 66 (194)
Q Consensus 5 S~YRGVr~r~~GKW~A~I~~~~k-gkri~LGtFdT~EEAA~AYD~Aa~kl~G~~A~lNFP~~~ 66 (194)
.+||||+++++|||+|+|+++.+ |+++|||+|+|+||||+|||+|+++++|.++++|||+++
T Consensus 1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 37999988889999999998874 789999999999999999999999999999999999863
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=92.61 E-value=0.065 Score=38.98 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=20.8
Q ss_pred CCCCceeeE-EECCCCcEEEEEeCCCC
Q 036963 2 VRRRHYRGV-RQRPWGKWAAEIRDPKK 27 (194)
Q Consensus 2 ~r~S~YRGV-r~r~~GKW~A~I~~~~k 27 (194)
..+|+|+|| |..+.+.|.|.-.+.++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~ 29 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGAS 29 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCe
Confidence 468999999 66678999999996643
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=83.23 E-value=0.22 Score=39.41 Aligned_cols=37 Identities=5% Similarity=-0.092 Sum_probs=27.3
Q ss_pred eeEEECCCCcEEEEEeCCCCCcEEecccccCHHHHHHHHH
Q 036963 8 RGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYD 47 (194)
Q Consensus 8 RGVr~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAA~AYD 47 (194)
+||.....++|.+.|.+. + .++||.|++.+|||+++.
T Consensus 110 ~g~~~~~~~k~~~vi~~~-~--~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 110 KAQQIAKIKNQKPIIVIS-P--DGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHTCCCEEEEC-T--TSCEEEESCHHHHHHHHT
T ss_pred eeeeeccCCCCceEEEEc-C--CceEEeeCCHHHHHHHHC
Confidence 455223345699999865 3 567999999999999964
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=80.62 E-value=1.7 Score=35.76 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=30.6
Q ss_pred eeEEECCCCcEEEEEeCCCCCcEEecccccCHHHHHHHHHHHHHHh
Q 036963 8 RGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRF 53 (194)
Q Consensus 8 RGVr~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAA~AYD~Aa~kl 53 (194)
.||+.++.|.|..++. .+|+++.+|. |.+||..+..++...+
T Consensus 14 ~~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 3787777889998876 4566888996 8888877766554443
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=76.27 E-value=5 Score=28.77 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=32.9
Q ss_pred EECCCC--cEEEEEeCCCCCcEEeccccc--CHHHHHHHHHHHHHHh
Q 036963 11 RQRPWG--KWAAEIRDPKKAARVWLGTFD--TAEAAALAYDEAALRF 53 (194)
Q Consensus 11 r~r~~G--KW~A~I~~~~kgkri~LGtFd--T~EEAA~AYD~Aa~kl 53 (194)
+-.+.| .|+-+.+..++.+++-||.|. |.+||....+++...+
T Consensus 29 ~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 344444 599998877888889999997 5888888877776665
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=64.10 E-value=12 Score=27.88 Aligned_cols=43 Identities=28% Similarity=0.307 Sum_probs=32.1
Q ss_pred EECCCC--cEEEEEeCCCCCcEEeccccc--CHHHHHHHHHHHHHHh
Q 036963 11 RQRPWG--KWAAEIRDPKKAARVWLGTFD--TAEAAALAYDEAALRF 53 (194)
Q Consensus 11 r~r~~G--KW~A~I~~~~kgkri~LGtFd--T~EEAA~AYD~Aa~kl 53 (194)
+-.+.| .|+-+.+..++.+++-||.|. |.+||....+++...+
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 344444 599988877888889999997 4888887777666555
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=60.41 E-value=6 Score=26.70 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=23.0
Q ss_pred EEEEeCCCCCcEEecccccCHHHHHHHHHHHHH
Q 036963 19 AAEIRDPKKAARVWLGTFDTAEAAALAYDEAAL 51 (194)
Q Consensus 19 ~A~I~~~~kgkri~LGtFdT~EEAA~AYD~Aa~ 51 (194)
.+.|.....--+|.+|.|.+.+||..+.++...
T Consensus 36 ~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 36 DSIVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp CEEEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CeEEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 344432233457899999999999888776655
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=55.09 E-value=11 Score=25.62 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=24.1
Q ss_pred EEEEeCCCCCcEEecccccCHHHHHHHHHHHHH
Q 036963 19 AAEIRDPKKAARVWLGTFDTAEAAALAYDEAAL 51 (194)
Q Consensus 19 ~A~I~~~~kgkri~LGtFdT~EEAA~AYD~Aa~ 51 (194)
.+.|.....--+|.+|-|.+.+||..+.++...
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 455553344458999999999999988777655
No 9
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=48.71 E-value=2.2 Score=37.09 Aligned_cols=16 Identities=31% Similarity=0.223 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHHHh
Q 036963 38 TAEAAALAYDEAALRF 53 (194)
Q Consensus 38 T~EEAA~AYD~Aa~kl 53 (194)
|.|||.....+.+..+
T Consensus 356 ~~eeal~~~~~~~~~i 371 (449)
T 3iot_A 356 TVDAALAAAQTNAAAM 371 (449)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5666666555544444
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=40.32 E-value=38 Score=25.68 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=27.1
Q ss_pred cEEEEEeCCCCCcEEecccccCHHHHHHHHHHHHHHhc
Q 036963 17 KWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFK 54 (194)
Q Consensus 17 KW~A~I~~~~kgkri~LGtFdT~EEAA~AYD~Aa~kl~ 54 (194)
.|+|+|. ....-+-++...+++.|.+|...|+.+|=
T Consensus 79 ~wva~Vk--~G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVK--AGRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEEC--CCCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 3999998 23224455555889999999999998874
No 11
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=34.45 E-value=63 Score=27.10 Aligned_cols=56 Identities=16% Similarity=0.085 Sum_probs=39.2
Q ss_pred CCceeeEE-ECCCCcEEEEEeCCCCCcEEecccccCHHHHHHHHHHHHHHhcCCCCCCCC
Q 036963 4 RRHYRGVR-QRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNF 62 (194)
Q Consensus 4 ~S~YRGVr-~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAA~AYD~Aa~kl~G~~A~lNF 62 (194)
..+|-||. +-..-|-.+-|. ..||-+..|. .++|+|..|.++.+..+........|
T Consensus 74 Pe~Fpglv~Rl~~Pk~t~LIF--~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~ 130 (218)
T 3eik_A 74 PKRFAAVIMRIREPKTTALIF--ASGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATF 130 (218)
T ss_dssp TTTCSSEEEEETTTTEEEEEC--TTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CccCceEEEEecCCcEEEEEE--CCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 34678873 334567888888 5666777776 67999999999988887543333444
No 12
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=31.48 E-value=47 Score=23.29 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=22.1
Q ss_pred CCceeeEEECCCCcEEEEEeCC-CCCcEEec
Q 036963 4 RRHYRGVRQRPWGKWAAEIRDP-KKAARVWL 33 (194)
Q Consensus 4 ~S~YRGVr~r~~GKW~A~I~~~-~kgkri~L 33 (194)
+--+.|+.++..|+|+.++.+. ++.+.||-
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~~Gkr~~vYs 39 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDSFGEPQFVYS 39 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred CccCCCeEEccCCcEEEEEEcCCCCEEEEEe
Confidence 3447889999999999999876 44445554
No 13
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=27.69 E-value=61 Score=25.17 Aligned_cols=36 Identities=22% Similarity=0.154 Sum_probs=26.4
Q ss_pred cEEEEEeCCCCCcEEecccccCHHHHHHHHHHHHHHhcC
Q 036963 17 KWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKG 55 (194)
Q Consensus 17 KW~A~I~~~~kgkri~LGtFdT~EEAA~AYD~Aa~kl~G 55 (194)
.|+|+|.. ...-+-++. .+++.|.+|...|+.+|=+
T Consensus 91 ~wva~Vk~--G~ilfEi~g-~~~~~A~eAlr~a~~KLP~ 126 (136)
T 3r8s_M 91 YWVALIQP--GKVLYEMDG-VPEELAREAFKLAAAKLPI 126 (136)
T ss_dssp EEEEEECT--TCEEEEEES-SCHHHHHHHHHHHHTTCSS
T ss_pred EEEEEECC--CCEEEEEeC-CCHHHHHHHHHHHHhcCCC
Confidence 39999983 322445555 4899999999999988743
No 14
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=23.75 E-value=99 Score=21.91 Aligned_cols=36 Identities=14% Similarity=0.002 Sum_probs=29.1
Q ss_pred cEEEEEeCCCCCcEEecccccCHHHHHHHHHHHHHH
Q 036963 17 KWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALR 52 (194)
Q Consensus 17 KW~A~I~~~~kgkri~LGtFdT~EEAA~AYD~Aa~k 52 (194)
.-.+.|-+.++.-.+|.|...+.+|.+.|-+.|...
T Consensus 28 s~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 28 NGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp TTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345677777777789999999999999999887554
No 15
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=22.53 E-value=90 Score=24.99 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=26.8
Q ss_pred cEEEEEeCCCCCcEEecccccCHHHHHHHHHHHHHHhcCC
Q 036963 17 KWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGS 56 (194)
Q Consensus 17 KW~A~I~~~~kgkri~LGtFdT~EEAA~AYD~Aa~kl~G~ 56 (194)
.|+|+|. .|+-++--.-.+++.|.+|..+|+.+|=+.
T Consensus 110 ~wvArVk---~G~ilfei~gv~~~~A~eAlr~A~~KlP~k 146 (157)
T 1ffk_F 110 GTAARSH---GANHDFIAWVNPDPAVEFAWRRAYMKVTPT 146 (157)
T ss_pred EEEEEEc---CCCEEEEEeccCHHHHHHHHHHHHhhCCCc
Confidence 4999998 344554444467889999999999887443
No 16
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=20.53 E-value=1e+02 Score=22.40 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=26.9
Q ss_pred EEEEeCCCCCcEEecccccCHHHHHHHHHHHHHH
Q 036963 19 AAEIRDPKKAARVWLGTFDTAEAAALAYDEAALR 52 (194)
Q Consensus 19 ~A~I~~~~kgkri~LGtFdT~EEAA~AYD~Aa~k 52 (194)
.+.|-+.++.-.+|.|...+.+|-++|-..|...
T Consensus 40 D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i 73 (114)
T 1svq_A 40 DCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI 73 (114)
T ss_dssp SEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3556655666789999999999999998877654
Done!