BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036966
         (546 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
 pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
          Length = 540

 Score = 33.9 bits (76), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 13/93 (13%)

Query: 236 RLAEEIDNPEY-----------QRLRCRVNYHALRFKPNI--MKLSESIVDKLRAEGHFM 282
           ++AE I++PE            +R  C   Y+ +  +PN+  + + E+ + ++ A+G   
Sbjct: 306 KVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKGVVT 365

Query: 283 SIHLRFEMDMLAFAGCFDIFKPEQQRILKKYRE 315
              +  E+D+L FA  FD      +RI  + R+
Sbjct: 366 EDGVLHELDVLVFATGFDAVDGNYRRIEIRGRD 398


>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
           Monooxygenase In The Rotated Conformation
          Length = 573

 Score = 33.5 bits (75), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 13/93 (13%)

Query: 236 RLAEEIDNPEY-----------QRLRCRVNYHALRFKPNI--MKLSESIVDKLRAEGHFM 282
           ++AE I++PE            +R  C   Y+ +  +PN+  + + E+ + ++ A+G   
Sbjct: 339 KVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKGVVT 398

Query: 283 SIHLRFEMDMLAFAGCFDIFKPEQQRILKKYRE 315
              +  E+D+L FA  FD      +RI  + R+
Sbjct: 399 EDGVLHELDVLVFATGFDAVDGNYRRIEIRGRD 431


>pdb|1LHS|A Chain A, Loggerhead Sea Turtle Myoglobin (Aquo-Met)
 pdb|1LHT|A Chain A, Loggerhead Sea Turtle Myoglobin (Cyano-Met)
          Length = 153

 Score = 30.0 bits (66), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 187 PEIHKNGKTKKIKAYQLRPPRDAPISWY--LT-----EAMEQMKKHGAIYLTPFSHRLAE 239
           P++  +G+   I+ +QL P      + +  LT     ++ E++KKHG   LT    R+ +
Sbjct: 19  PDLSAHGQEVIIRLFQLHPETQERFAKFKNLTTIDALKSSEEVKKHGTTVLTALG-RILK 77

Query: 240 EIDNPEYQRLRCRVNYHALRFKPNIMKLSE--SIVDKLRAEGH 280
           + +N E Q L+     HA + K  +  L     I+ K+ AE H
Sbjct: 78  QKNNHE-QELKPLAESHATKHKIPVKYLEFICEIIVKVIAEKH 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,613,219
Number of Sequences: 62578
Number of extensions: 708853
Number of successful extensions: 1513
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1511
Number of HSP's gapped (non-prelim): 11
length of query: 546
length of database: 14,973,337
effective HSP length: 104
effective length of query: 442
effective length of database: 8,465,225
effective search space: 3741629450
effective search space used: 3741629450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)