Query 036966
Match_columns 546
No_of_seqs 200 out of 432
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 11:51:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 2E-14 6.9E-19 149.8 13.3 301 112-440 20-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.2 2.6E-11 8.9E-16 125.5 11.0 276 113-437 7-348 (362)
3 2hhc_A NODZ, nodulation fucosy 97.7 0.00045 1.5E-08 69.4 13.4 263 113-430 3-294 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 97.5 0.0055 1.9E-07 66.7 20.1 253 113-436 144-420 (526)
5 1wgl_A TOLL-interacting protei 57.6 4 0.00014 32.1 1.5 49 366-418 9-57 (59)
6 3l32_A Phosphoprotein; antipar 37.3 15 0.00053 27.6 1.8 30 257-286 2-31 (45)
7 1p3q_Q VPS9P, vacuolar protein 26.4 9.1 0.00031 29.9 -1.0 39 368-410 14-52 (54)
8 2dhy_A CUE domain-containing p 21.7 15 0.00053 29.6 -0.6 43 367-413 19-61 (67)
9 1l2m_A REP protein; A+B fold, 17.1 1.2E+02 0.0043 26.8 4.2 29 332-361 16-44 (118)
10 2nyg_A YOKD protein; PFAM02522 13.0 1.4E+02 0.0047 29.8 3.7 12 143-154 63-74 (273)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.55 E-value=2e-14 Score=149.75 Aligned_cols=301 Identities=15% Similarity=0.219 Sum_probs=171.1
Q ss_pred CCCceEEEEec-C-CchhhhhhHhhHHHHHHHhcCe----EEecccCCCCcccCC------CCCcccCcHHHHHHHhhhh
Q 036966 112 ESNGYLRVRCN-G-GLNQQRTAICNAVLAARIMNAT----LVLPELDANSFWHDD------SGFQGIYDVEHFIQTLRYD 179 (546)
Q Consensus 112 ~snGyL~V~~n-G-GLNqqR~~IcDaVavARiLNAT----LVlP~L~~~s~WkD~------S~F~dIFD~dhFI~sL~~d 179 (546)
..++||+...| | |.|+||...-.|.+.|+.||.| ||||-...---|+.. -.|++.||++++- ..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~----~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN----KN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----TT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----hh
Confidence 57899999764 5 8999999999999999999999 999966433335432 2799999998753 44
Q ss_pred hhhh------hcC-chh-------------hhccc---cc-cccccc------cCCCCCCCchh-h--------------
Q 036966 180 VQIV------ESI-PEI-------------HKNGK---TK-KIKAYQ------LRPPRDAPISW-Y-------------- 214 (546)
Q Consensus 180 VrIV------k~L-P~~-------------~~~~~---~~-~i~~~~------~~p~~~a~~~w-Y-------------- 214 (546)
|+|+ +++ |.. ...+. .. ...+.. ........+.| |
T Consensus 96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~ 175 (408)
T 4ap5_A 96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQ 175 (408)
T ss_dssp SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEEC
T ss_pred CCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEe
Confidence 4443 111 110 00000 00 000000 00000001222 0
Q ss_pred --HHHHHHHHHHhcc---eEeccCCcccccCCCchhHHhhhhhhcccccccchhHHHHHHHHHHHHHhcCCcceecchhh
Q 036966 215 --LTEAMEQMKKHGA---IYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPNIMKLSESIVDKLRAEGHFMSIHLRFE 289 (546)
Q Consensus 215 --~~~vLP~L~k~~V---i~l~~fd~rLa~~~~p~eiQrLRCrvnf~ALrF~p~I~~Lg~~lV~RLR~~GpfiAlHLR~E 289 (546)
...+-|.+.+..- +.+..+...|+.-....+...+| ..|+|.+.|.+.|++.++..- .++|+++|+|..
T Consensus 176 ~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L-~~~~~~~h~r~~ 249 (408)
T 4ap5_A 176 GSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHL-NSTDDADRIPFQ 249 (408)
T ss_dssp SBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHH-CCCTTTTTCCCC
T ss_pred ecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHh-Ccccceeecccc
Confidence 1112344433221 11222222232222223333332 379999999999999988766 469999999999
Q ss_pred hhHHhhhcCCCCCCHHHHHHHHHHHHhhhcccccChHHHhc-CCCCCCCHHHHHHHHHHcCCCCCceEEEeeccccCCcc
Q 036966 290 MDMLAFAGCFDIFKPEQQRILKKYREENFKEKKLVYKERRA-IGKCPLTPEEVGLILRAMGFDNSTKIYLAAGELFGGEK 368 (546)
Q Consensus 290 ~DMLAfsgC~~~~~~~E~~eL~~~R~~~w~~k~i~~~~~R~-~G~CPLtPeEvgl~LralGf~~~T~IYlAsGeiyGg~~ 368 (546)
.||.. .|.......- ..|-..||..... ... ...+|..++.+..+.+.|-=-+.+.||||+=+. +.
T Consensus 250 ~dw~~--~~~~~~~~~~----~~y~~~H~Rr~d~----~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~~---~~ 316 (408)
T 4ap5_A 250 EDWMK--MKVKLGSALG----GPYLGVHLRRKDF----IWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAV---RK 316 (408)
T ss_dssp SSGGG--CCCCTTCBCC----EEEEEEEECCTTT----TTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECCC---HH
T ss_pred hhHhh--hhcccccccC----CCccccccccccc----hhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCCc---hh
Confidence 99877 4532210000 0000001111100 001 123344444444444434333445799998652 44
Q ss_pred cchhHHHhCCccccccCCCChhhhcccccchhhhhhHhhhhhcCccccccCCCCchhhhhhhhhcccccCce
Q 036966 369 FMKPFRALFPHLENHSSVDPSEELVTNTRGLLGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRT 440 (546)
Q Consensus 369 ~l~pL~~~FPnl~tKe~L~~~eEL~~~~~~~~~AALDYiVcl~SDVFv~t~~G~sNfa~~V~GhR~y~G~~k 440 (546)
.+..|++.+|.++.-.. ..+++... .....|.||-+||.+||+||+|..+ +|+..|.-.|-+.|+..
T Consensus 317 ~~~~l~~~~~~~~~~~~--~~~~~~~~-~d~~~a~idq~Ic~~a~~FiGt~~S--tfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 317 EYEELKKLLPEMVRFEP--TWEELELY-KDGGVAIIDQWICAHARFFIGTSVS--TFSFRIHEEREILGLDP 383 (408)
T ss_dssp HHHHHHHHCTTEECCCC--CHHHHHHH-HHHHHHHHHHHHHHTEEEEEBCTTC--HHHHHHHHHHHHHTBCG
T ss_pred HHHHHHHhCCCcEEecC--cchhhhcc-CcchhhHHHHHHHHhCCeeEeCCcC--chhHHHHHHHHhcCCCC
Confidence 57889999998763322 22333332 2334589999999999999999655 99999999999999863
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.23 E-value=2.6e-11 Score=125.53 Aligned_cols=276 Identities=16% Similarity=0.240 Sum_probs=155.8
Q ss_pred CCceEEE-EecCCchhhhhhHhhHHHHHHHhcCeEEecccCCCCccc-CCCCCcccCcHHHHHHHhhhhhhhh------h
Q 036966 113 SNGYLRV-RCNGGLNQQRTAICNAVLAARIMNATLVLPELDANSFWH-DDSGFQGIYDVEHFIQTLRYDVQIV------E 184 (546)
Q Consensus 113 snGyL~V-~~nGGLNqqR~~IcDaVavARiLNATLVlP~L~~~s~Wk-D~S~F~dIFD~dhFI~sL~~dVrIV------k 184 (546)
.||||+. -|-|-+.||-....-+.+.|+.||.|||||-+-.-..-+ -.-.|++.|+++.- +..-||| +
T Consensus 7 ~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~~~~~~vpf~~yF~v~~l----~~yhrvi~me~Fm~ 82 (362)
T 3zy2_A 7 PNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHPETKMIPFEFLFQVGTV----AKYTRVVTMQEFTK 82 (362)
T ss_dssp TTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSSSSCEEECHHHHBCHHHH----TTTSCEECHHHHHH
T ss_pred CCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccCCcccccchhheeecchh----hhhceeeeHHHHHH
Confidence 6999998 799999999999999999999999999999875332211 01258888887653 2222221 1
Q ss_pred cC-chhhhccccccccccccC-----------CCCCC----------------------C----chhhHHHHHHHH----
Q 036966 185 SI-PEIHKNGKTKKIKAYQLR-----------PPRDA----------------------P----ISWYLTEAMEQM---- 222 (546)
Q Consensus 185 ~L-P~~~~~~~~~~i~~~~~~-----------p~~~a----------------------~----~~wY~~~vLP~L---- 222 (546)
+| |..+--.+ +..-++..+ -+.+. + .+|-........
T Consensus 83 ~lap~~WP~~~-R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~~ 161 (362)
T 3zy2_A 83 KIMPTVWPPEK-RKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEKF 161 (362)
T ss_dssp HTHHHHSCGGG-CEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHHS
T ss_pred HhccccCCccc-ceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHHhC
Confidence 12 11111000 000011000 00000 0 111001111111
Q ss_pred --HHhcceEeccCCcccccCCCchhHHhhhhhhcccccccchhHHHHHHHHHHHHHhcCCcceecchhhhhHHhhhcCCC
Q 036966 223 --KKHGAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPNIMKLSESIVDKLRAEGHFMSIHLRFEMDMLAFAGCFD 300 (546)
Q Consensus 223 --~k~~Vi~l~~fd~rLa~~~~p~eiQrLRCrvnf~ALrF~p~I~~Lg~~lV~RLR~~GpfiAlHLR~E~DMLAfsgC~~ 300 (546)
.+|=|+.|++.-.-.--....-.+|| -|+++++|.+.|++.++.--. +||||+|||--.||.- .|.+
T Consensus 162 p~~~~pVlAf~gaPa~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~-rpyVgIHLR~G~DW~~--aC~h 230 (362)
T 3zy2_A 162 PSEEYPVLAFSSAPAPFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANLA-KPFVAVHLRNDADWVR--VCEH 230 (362)
T ss_dssp CTTTCSEEEESSCSSCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHCC-SSEEEEEECCCHHHHH--HHHT
T ss_pred CcccCceEeecCCCCCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhcC-CCeEEEEEecCCcHHH--HHhh
Confidence 24566666653211000001122333 599999999999998888543 4999999999999986 5764
Q ss_pred CCCHHHHHHHHHHHHhhhcccccChH----HHhcCC-----CCCCCHHH----HHHHHHHcCCCCCceEEEeeccccCCc
Q 036966 301 IFKPEQQRILKKYREENFKEKKLVYK----ERRAIG-----KCPLTPEE----VGLILRAMGFDNSTKIYLAAGELFGGE 367 (546)
Q Consensus 301 ~~~~~E~~eL~~~R~~~w~~k~i~~~----~~R~~G-----~CPLtPeE----vgl~LralGf~~~T~IYlAsGeiyGg~ 367 (546)
.-.. + + .. -..+. -+...| .|==+.++ +..+++.++. ..||||+-. +
T Consensus 231 lk~~-~---~-----~~----lfaSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~l---ksVFIATDa----~ 290 (362)
T 3zy2_A 231 IDTT-T---N-----RP----LFASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGA---KSVFVASDK----D 290 (362)
T ss_dssp CCTT-T---C-----CC----CTTTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHTC---SEEEEEESS----C
T ss_pred hccc-c---C-----cc----cccCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcCC---cEEEEecCC----H
Confidence 2100 0 0 00 00000 000112 23223333 4445555554 469999965 3
Q ss_pred ccchhHHHhCCccccc-cCCCChhhhcccccchhhhhhHhhhhhcCccccccCCCCchhhhhhhhhccccc
Q 036966 368 KFMKPFRALFPHLENH-SSVDPSEELVTNTRGLLGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYG 437 (546)
Q Consensus 368 ~~l~pL~~~FPnl~tK-e~L~~~eEL~~~~~~~~~AALDYiVcl~SDVFv~t~~G~sNfa~~V~GhR~y~G 437 (546)
..+.-|++.|+....+ ..+ .++ .|+||-+||.+||+||+|.. |+|+..|.-.|--.|
T Consensus 291 ~~~~ELk~~L~~~~v~vv~~-~pe----------~a~ID~~I~~~A~~FIGN~~--SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 291 HMIDEINEALKPYEIEAHRQ-EPD----------DMYTSLAIMGRADLFVGNCV--STFSHIVKRERDHAG 348 (362)
T ss_dssp CCHHHHHHHHGGGTCCEECC-SSC----------CHHHHHHHHHHSSEEEECTT--CHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhhccCceEEEe-CCc----------hhHHHHHHHHhCCEeecCcc--ccccHHHHHHHHhcC
Confidence 4578888888652111 011 111 48999999999999999954 599999999998888
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.65 E-value=0.00045 Score=69.43 Aligned_cols=263 Identities=12% Similarity=0.103 Sum_probs=126.6
Q ss_pred CCceEEEEecCCchhhhhhHhhHHHHHHHhcCeEEecccCCCCcccCCCCCcccCcHHHHHHHhhhh--hhhhhc-Cchh
Q 036966 113 SNGYLRVRCNGGLNQQRTAICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIQTLRYD--VQIVES-IPEI 189 (546)
Q Consensus 113 snGyL~V~~nGGLNqqR~~IcDaVavARiLNATLVlP~L~~~s~WkD~S~F~dIFD~dhFI~sL~~d--VrIVk~-LP~~ 189 (546)
+..||++...|||.+|=-+++.|.++|.+.|.+|+|--.. ..|-. ..|.+.| .-.|. ....- ..+... .|..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~ 77 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQ 77 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH-HHHBC-CCSEETTEEEECSGGGGT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC-ccccc-chhhhcccceeccccccc
Confidence 5579999999999999999999999999999998886443 22321 2455555 22232 11000 000000 0000
Q ss_pred hhccccccccccccCCCCC--CCch-hh--HHHHHHHHHHhc----------ceEeccCCcccccCCCchhHHhhhhhhc
Q 036966 190 HKNGKTKKIKAYQLRPPRD--APIS-WY--LTEAMEQMKKHG----------AIYLTPFSHRLAEEIDNPEYQRLRCRVN 254 (546)
Q Consensus 190 ~~~~~~~~i~~~~~~p~~~--a~~~-wY--~~~vLP~L~k~~----------Vi~l~~fd~rLa~~~~p~eiQrLRCrvn 254 (546)
..+..+ +.|+.+ .... .| .+++.|.-.+.. ..++.+ +..+..... .+ .-...
T Consensus 78 ------~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~w~~~-~~----~~~~i 144 (330)
T 2hhc_A 78 ------LSFPGP-FFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVC-DACLMWRCS-EE----AERLI 144 (330)
T ss_dssp ------CCCCSS-EESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEE-CSCCTTSSC-HH----HHHHH
T ss_pred ------ccCCCC-cCchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEc-ccccccchh-hh----hHHHH
Confidence 000000 000000 0000 11 233333111100 012221 000100000 01 11233
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCcceecchhhhhHHhhhcCCCCCCHHHH-HHHHHHHHhhhcccccChHHHhcCCC
Q 036966 255 YHALRFKPNIMKLSESIVDKLRAEGHFMSIHLRFEMDMLAFAGCFDIFKPEQQ-RILKKYREENFKEKKLVYKERRAIGK 333 (546)
Q Consensus 255 f~ALrF~p~I~~Lg~~lV~RLR~~GpfiAlHLR~E~DMLAfsgC~~~~~~~E~-~eL~~~R~~~w~~k~i~~~~~R~~G~ 333 (546)
|.-|+++++|++..+++.+.+-...++||+|.|.=.+.- .|.++..-.+. .-+..|.
T Consensus 145 ~~yl~p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~~---~~~~~~~~~~~~~~l~~~~------------------- 202 (330)
T 2hhc_A 145 FRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHGNGED---IMEHAPYWADSELALHQVC------------------- 202 (330)
T ss_dssp HHHSCBCHHHHHHHHHHHHHHTTTSEEEEEEECC---------------CHHHHHHHHHHH-------------------
T ss_pred HhcCCccHHHHHHHHHHHHHhccCCceEEEEEecCCCCc---ccccCcchHHHhHHHHHHH-------------------
Confidence 467899999999999888765445699999999653311 23221000000 0011111
Q ss_pred CCCCHHHHHHHHHHc-C-CC-CCceEEEeeccccCCcccchhHHHhCCcccccc-CCCCh--hhhcc---cccchhhhhh
Q 036966 334 CPLTPEEVGLILRAM-G-FD-NSTKIYLAAGELFGGEKFMKPFRALFPHLENHS-SVDPS--EELVT---NTRGLLGSAV 404 (546)
Q Consensus 334 CPLtPeEvgl~Lral-G-f~-~~T~IYlAsGeiyGg~~~l~pL~~~FPnl~tKe-~L~~~--eEL~~---~~~~~~~AAL 404 (546)
.-++.+ . .+ .+..|||||-+. ..++-|+++||++.+-. .+... ..+.. .......+.+
T Consensus 203 ---------~~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 269 (330)
T 2hhc_A 203 ---------MAIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALI 269 (330)
T ss_dssp ---------HHHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHH
Confidence 111111 1 12 467899999874 46788999999854321 11110 11100 0112455889
Q ss_pred HhhhhhcCcccc-ccCCCCchhhhhhh
Q 036966 405 DYMVCLLSDIFM-PTYDGPSNFANNLL 430 (546)
Q Consensus 405 DYiVcl~SDVFv-~t~~G~sNfa~~V~ 430 (546)
|.+...++|.+| .+ +.|+|+...+
T Consensus 270 Dm~LLS~cd~~I~~~--~~STFs~~aa 294 (330)
T 2hhc_A 270 DMYLLARCATVIRFP--PTSAFTRYAR 294 (330)
T ss_dssp HHHHHTTCSEEEEES--TTCGGGHHHH
T ss_pred HHHHHHcCCeeEECC--CCCCHHHHHH
Confidence 999999999999 33 1458888776
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.50 E-value=0.0055 Score=66.71 Aligned_cols=253 Identities=16% Similarity=0.174 Sum_probs=138.7
Q ss_pred CCceEEEEe--cCCchhhhhhHhhHHHHHHHhcCeEEecccCCCCcccC-CCCCcccCcHHHHHHHhhhhhhhhhcCchh
Q 036966 113 SNGYLRVRC--NGGLNQQRTAICNAVLAARIMNATLVLPELDANSFWHD-DSGFQGIYDVEHFIQTLRYDVQIVESIPEI 189 (546)
Q Consensus 113 snGyL~V~~--nGGLNqqR~~IcDaVavARiLNATLVlP~L~~~s~WkD-~S~F~dIFD~dhFI~sL~~dVrIVk~LP~~ 189 (546)
+..||+... -.|+..+-..++-|..+|-.+|.|||+-.=. |.- ...|+++|.. +...+...
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~---------- 207 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR---------- 207 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC----------
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC----------
Confidence 458999876 5799999999999999999999999994432 432 2467777764 11111110
Q ss_pred hhccccccccccccCCCCCCCchhhHHHHHHHHHHhcceEeccCCc-----ccccCCCch----hHHhhh-------hh-
Q 036966 190 HKNGKTKKIKAYQLRPPRDAPISWYLTEAMEQMKKHGAIYLTPFSH-----RLAEEIDNP----EYQRLR-------CR- 252 (546)
Q Consensus 190 ~~~~~~~~i~~~~~~p~~~a~~~wY~~~vLP~L~k~~Vi~l~~fd~-----rLa~~~~p~----eiQrLR-------Cr- 252 (546)
+......|--... -..+.||.+...+. ...+-..|. .++++. +.
T Consensus 208 ----------------~~~~~~~w~~~~~---~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q 268 (526)
T 2de0_X 208 ----------------SGISTGHWSGEVK---DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQ 268 (526)
T ss_dssp ----------------CCSCCCBCCCTTG---GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHH
T ss_pred ----------------CccccCCCCCccc---CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHH
Confidence 0001111100000 01233333221110 010001111 222221 11
Q ss_pred hcccccccchhHHHHHHHHHHHHHhcCCcceecchhhhhHHhhhcCCCCCCHHHHHHHHHHHHhhhcccccChHHHhcCC
Q 036966 253 VNYHALRFKPNIMKLSESIVDKLRAEGHFMSIHLRFEMDMLAFAGCFDIFKPEQQRILKKYREENFKEKKLVYKERRAIG 332 (546)
Q Consensus 253 vnf~ALrF~p~I~~Lg~~lV~RLR~~GpfiAlHLR~E~DMLAfsgC~~~~~~~E~~eL~~~R~~~w~~k~i~~~~~R~~G 332 (546)
+.-.-+|+.++|++..+++...+.-.+|.|++|.|-- |-+..- ..-...++- +... ..|+
T Consensus 269 ~~~yl~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrG-Dk~~~E--~~~~~~~~Y--~~~v-~~~~-------------- 328 (526)
T 2de0_X 269 FVKYLIRPQPWLEKEIEEATKKLGFKHPVIGVHVRRT-DKVGTE--AAFHPIEEY--MVHV-EEHF-------------- 328 (526)
T ss_dssp HHHHHTCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC------C--CCSCSHHHH--HHHH-HHHH--------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCC-CCCccc--cccCCHHHH--HHHH-HHHH--------------
Confidence 1112489999999999999988766789999999963 332210 000011110 1000 0111
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEeeccccCCcccchhHHHhCCcc--ccccCCCChhhhcc--cccchhhhhhHhhh
Q 036966 333 KCPLTPEEVGLILRAMGFDNSTKIYLAAGELFGGEKFMKPFRALFPHL--ENHSSVDPSEELVT--NTRGLLGSAVDYMV 408 (546)
Q Consensus 333 ~CPLtPeEvgl~LralGf~~~T~IYlAsGeiyGg~~~l~pL~~~FPnl--~tKe~L~~~eEL~~--~~~~~~~AALDYiV 408 (546)
..|+.......+.||||+-+ ...++-+++.||+. ++-........+.. ...+...+.+|.++
T Consensus 329 ----------~~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~l 394 (526)
T 2de0_X 329 ----------QLLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHF 394 (526)
T ss_dssp ----------HHHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHH
T ss_pred ----------HHHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHH
Confidence 11233346778899999987 56688888899986 32222211111111 11234568999999
Q ss_pred hhcCccccccCCCCchhhhhhhhhcccc
Q 036966 409 CLLSDIFMPTYDGPSNFANNLLGHRLYY 436 (546)
Q Consensus 409 cl~SDVFv~t~~G~sNfa~~V~GhR~y~ 436 (546)
..++|+||+|+.+ ||+.++...+.-.
T Consensus 395 Ls~cd~~Vgt~sS--~~srla~~l~~~~ 420 (526)
T 2de0_X 395 LSQADFLVCTFSS--QVCRVAYEIMQTL 420 (526)
T ss_dssp HHHSSEEEECTTS--HHHHHHHHHHTTS
T ss_pred HhcCCeeecCCCC--HHHHHHHHHhcCc
Confidence 9999999999765 9999888766433
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=57.62 E-value=4 Score=32.08 Aligned_cols=49 Identities=16% Similarity=0.389 Sum_probs=35.5
Q ss_pred CcccchhHHHhCCccccccCCCChhhhcccccchhhhhhHhhhhhcCcccccc
Q 036966 366 GEKFMKPFRALFPHLENHSSVDPSEELVTNTRGLLGSAVDYMVCLLSDIFMPT 418 (546)
Q Consensus 366 g~~~l~pL~~~FPnl~tKe~L~~~eEL~~~~~~~~~AALDYiVcl~SDVFv~t 418 (546)
-+..+..|++|||++ +++.+ +.......+...+|||-+..+..+-|=|+
T Consensus 9 ~ee~l~~L~emFP~l-d~~~I---~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNM-DQEVI---RSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHHHCSSS-CHHHH---HHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CHHHHHHHHHHCCCC-CHHHH---HHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 355689999999996 45444 22222246778899999999998877766
No 6
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=37.34 E-value=15 Score=27.57 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=23.5
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCcceecc
Q 036966 257 ALRFKPNIMKLSESIVDKLRAEGHFMSIHL 286 (546)
Q Consensus 257 ALrF~p~I~~Lg~~lV~RLR~~GpfiAlHL 286 (546)
++-|+.-+.++|.++|.||+++..|.-+--
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtGe~FfKiWS 31 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSGERFLKIWS 31 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 355778889999999999998777764433
No 7
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=26.36 E-value=9.1 Score=29.87 Aligned_cols=39 Identities=21% Similarity=0.517 Sum_probs=20.8
Q ss_pred ccchhHHHhCCccccccCCCChhhhcccccchhhhhhHhhhhh
Q 036966 368 KFMKPFRALFPHLENHSSVDPSEELVTNTRGLLGSAVDYMVCL 410 (546)
Q Consensus 368 ~~l~pL~~~FPnl~tKe~L~~~eEL~~~~~~~~~AALDYiVcl 410 (546)
..+..|++|||++ +++-+ +....-..+...+|||....+
T Consensus 14 ~~~~~L~~MFP~l-D~evI---~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 14 DTLNTLQNMFPDM-DPSLI---EDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHSTTS-CHHHH---HHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHcccC-CHHHH---HHHHHHcCCCHHHHHHHHHhh
Confidence 3478999999996 45544 222222456677888876543
No 8
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.74 E-value=15 Score=29.56 Aligned_cols=43 Identities=16% Similarity=0.436 Sum_probs=29.0
Q ss_pred cccchhHHHhCCccccccCCCChhhhcccccchhhhhhHhhhhhcCc
Q 036966 367 EKFMKPFRALFPHLENHSSVDPSEELVTNTRGLLGSAVDYMVCLLSD 413 (546)
Q Consensus 367 ~~~l~pL~~~FPnl~tKe~L~~~eEL~~~~~~~~~AALDYiVcl~SD 413 (546)
+..++-|++|||++ +++.+- .-|.. ..+...+|||-+..+..|
T Consensus 19 ~~~v~~L~~MFP~l-D~~vI~--~vL~a-~~G~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 19 NQAMDDFKTMFPNM-DYDIIE--CVLRA-NSGAVDATIDQLLQMNLE 61 (67)
T ss_dssp HHHHHHHHHHCSSS-CHHHHH--HHHHH-HTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCC-CHHHHH--HHHHH-cCCCHHHHHHHHHhcCCC
Confidence 34588999999996 454442 23333 467788999988776654
No 9
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=17.12 E-value=1.2e+02 Score=26.79 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCceEEEeec
Q 036966 332 GKCPLTPEEVGLILRAMGFDNSTKIYLAAG 361 (546)
Q Consensus 332 G~CPLtPeEvgl~LralGf~~~T~IYlAsG 361 (546)
-.|||++||+...|+.+--+. ...|+...
T Consensus 16 p~c~l~Ke~~l~~l~~l~~p~-~~~yi~i~ 44 (118)
T 1l2m_A 16 PKCDLTKENALSQITNLQTPT-NKLFIKIC 44 (118)
T ss_dssp TTCCCCHHHHHHHHHHCCCSS-CEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhhcCCc-ceeeeeeh
Confidence 369999999999999988554 35666665
No 10
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=12.95 E-value=1.4e+02 Score=29.78 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=9.9
Q ss_pred cCeEEecccCCC
Q 036966 143 NATLVLPELDAN 154 (546)
Q Consensus 143 NATLVlP~L~~~ 154 (546)
+.|||||.+..+
T Consensus 63 ~GTLvmPtft~~ 74 (273)
T 2nyg_A 63 EGTIVMPSQSVE 74 (273)
T ss_dssp TSEEEEECCCTT
T ss_pred CCeEEEeccccc
Confidence 589999998654
Done!