Query 036966
Match_columns 546
No_of_seqs 200 out of 432
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 11:51:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036966.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036966hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 43.0 4.5 0.00032 30.3 1.5 49 367-419 10-58 (59)
2 d2ihoa2 d.3.1.18 (A:156-293) A 34.7 3.6 0.00026 35.0 -0.2 36 145-180 31-71 (138)
3 d1l5ia_ d.89.1.4 (A:) DNA-bind 19.8 45 0.0033 27.6 4.1 29 332-361 16-44 (118)
4 d2gh1a1 c.66.1.49 (A:13-293) M 14.8 36 0.0026 30.6 2.4 90 254-352 100-189 (281)
5 d1a0aa_ a.38.1.1 (A:) Pho4 B/H 13.7 40 0.0029 24.3 2.0 42 369-414 20-61 (63)
6 d2g7ja1 d.198.5.1 (A:1-112) Pu 13.0 38 0.0028 27.5 1.7 18 336-353 3-20 (112)
7 d1jjcb2 a.6.1.1 (B:400-474) Do 12.8 63 0.0046 24.0 3.0 24 327-351 12-35 (75)
8 d1f54a_ a.39.1.5 (A:) Calmodul 12.7 1.1E+02 0.0081 21.7 4.4 17 336-352 27-43 (77)
9 d1hfoa_ d.80.1.3 (A:) Micropha 12.3 1.2E+02 0.0088 23.7 4.8 29 265-293 20-48 (113)
10 d1y0ya1 b.49.3.1 (A:73-163) Fr 11.6 51 0.0037 25.4 2.1 16 112-127 8-23 (91)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.97 E-value=4.5 Score=30.26 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=35.5
Q ss_pred cccchhHHHhCCccccccCCCChhhhcccccchhhhhhHhhhhhcCccccccC
Q 036966 367 EKFMKPFRALFPHLENHSSVDPSEELVTNTRGLLGSAVDYMVCLLSDIFMPTY 419 (546)
Q Consensus 367 ~~~l~pL~~~FPnl~tKe~L~~~eEL~~~~~~~~~AALDYiVcl~SDVFv~t~ 419 (546)
+..+..|++|||++- ++.+- .=|.. ..+...+|+|=+.-+.-+.|-|+.
T Consensus 10 Ee~i~~LkeMFP~~D-~~vI~--~VL~a-~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMD-QEVIR--SVLEA-QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSC-HHHHH--HHHTT-TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCC-HHHHH--HHHHH-cCCCHHHHHHHHHhcCCCCcCCCC
Confidence 456999999999974 43331 12222 467788999999999888888763
No 2
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=34.65 E-value=3.6 Score=35.00 Aligned_cols=36 Identities=31% Similarity=0.563 Sum_probs=30.7
Q ss_pred eEEecccCCCCcccCC-----CCCcccCcHHHHHHHhhhhh
Q 036966 145 TLVLPELDANSFWHDD-----SGFQGIYDVEHFIQTLRYDV 180 (546)
Q Consensus 145 TLVlP~L~~~s~WkD~-----S~F~dIFD~dhFI~sL~~dV 180 (546)
=||||...-+++|+++ .-=+.|||-|.|--..|.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 3899999999999985 35589999999998888765
No 3
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=19.77 E-value=45 Score=27.57 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCceEEEeec
Q 036966 332 GKCPLTPEEVGLILRAMGFDNSTKIYLAAG 361 (546)
Q Consensus 332 G~CPLtPeEvgl~LralGf~~~T~IYlAsG 361 (546)
-+|||++||+...|+.|--+.+ ..||..+
T Consensus 16 p~C~l~ke~~l~~l~~l~~p~~-~~~i~v~ 44 (118)
T d1l5ia_ 16 PKCDLTKENALSQITNLQTPTN-KLFIKIC 44 (118)
T ss_dssp TTCCCCHHHHHHHHHHCCCSSC-EEEEEEE
T ss_pred CCCCCCHHHHHHHHHHhcCCcc-eeEEEEc
Confidence 3699999999999999876544 4577665
No 4
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=14.77 E-value=36 Score=30.58 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=55.4
Q ss_pred cccccccchhHHHHHHHHHHHHHhcCCcceecchhhhhHHhhhcCCCCCCHHHHHHHHHHHHhhhcccccChHHHhcCCC
Q 036966 254 NYHALRFKPNIMKLSESIVDKLRAEGHFMSIHLRFEMDMLAFAGCFDIFKPEQQRILKKYREENFKEKKLVYKERRAIGK 333 (546)
Q Consensus 254 nf~ALrF~p~I~~Lg~~lV~RLR~~GpfiAlHLR~E~DMLAfsgC~~~~~~~E~~eL~~~R~~~w~~k~i~~~~~R~~G~ 333 (546)
+.++|...++.+++-+++.+.|+.+|.++....-...++..+. ..+....+...+....+. | ....+..|.
T Consensus 100 ~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~ 170 (281)
T d2gh1a1 100 CHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYL--LDGEKQSEFIQLGVLQKL-F------ESDTQRNGK 170 (281)
T ss_dssp EESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEE--ETTSCHHHHCCHHHHHHH-H------HHHHHTTCC
T ss_pred EehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhc--cCchhhhhhhhHHHHHHH-H------HHHHHHcCC
Confidence 4456777788888888888888888888877665555555432 233333222222211111 1 122345677
Q ss_pred CCCCHHHHHHHHHHcCCCC
Q 036966 334 CPLTPEEVGLILRAMGFDN 352 (546)
Q Consensus 334 CPLtPeEvgl~LralGf~~ 352 (546)
.|....++..+|+..||.+
T Consensus 171 ~~~i~~~l~~~l~eaGf~~ 189 (281)
T d2gh1a1 171 DGNIGMKIPIYLSELGVKN 189 (281)
T ss_dssp CTTGGGTHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHcCCeE
Confidence 7777788999999999986
No 5
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.74 E-value=40 Score=24.25 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=26.3
Q ss_pred cchhHHHhCCccccccCCCChhhhcccccchhhhhhHhhhhhcCcc
Q 036966 369 FMKPFRALFPHLENHSSVDPSEELVTNTRGLLGSAVDYMVCLLSDI 414 (546)
Q Consensus 369 ~l~pL~~~FPnl~tKe~L~~~eEL~~~~~~~~~AALDYiVcl~SDV 414 (546)
.++.|+++-|...+..+.... .....-+..|+|||-.++.+|
T Consensus 20 ~~~~L~~llP~~~~~~~~~~k----~sKa~iL~~Av~yI~~Lq~~v 61 (63)
T d1a0aa_ 20 ALHELASLIPAEWKQQNVSAA----PSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp HHHHHHHTSCHHHHTSSCCCC----SCTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHCCCcccccCCccc----ccHHHHHHHHHHHHHHHHHhh
Confidence 367788888876544332211 111234669999999998775
No 6
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=12.97 E-value=38 Score=27.54 Aligned_cols=18 Identities=39% Similarity=0.698 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHcCCCCC
Q 036966 336 LTPEEVGLILRAMGFDNS 353 (546)
Q Consensus 336 LtPeEvgl~LralGf~~~ 353 (546)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 779999999999999754
No 7
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=12.83 E-value=63 Score=24.01 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=19.7
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCCC
Q 036966 327 ERRAIGKCPLTPEEVGLILRAMGFD 351 (546)
Q Consensus 327 ~~R~~G~CPLtPeEvgl~LralGf~ 351 (546)
..|..|.. ++++|+..+|+.|||.
T Consensus 12 i~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 12 ANRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHHhCCC-CCHHHHHHHHHHcCCc
Confidence 34556755 9999999999999996
No 8
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.69 E-value=1.1e+02 Score=21.71 Aligned_cols=17 Identities=18% Similarity=0.632 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHcCCCC
Q 036966 336 LTPEEVGLILRAMGFDN 352 (546)
Q Consensus 336 LtPeEvgl~LralGf~~ 352 (546)
++++|+..+|+.+|+.-
T Consensus 27 I~~~el~~~l~~~g~~~ 43 (77)
T d1f54a_ 27 ISSSELATVMRSLGLSP 43 (77)
T ss_dssp EEHHHHHHHHHHHTCCC
T ss_pred EChHHHHHHHHHhCCCC
Confidence 66777777777777664
No 9
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]}
Probab=12.35 E-value=1.2e+02 Score=23.68 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCcceecchhhhhHH
Q 036966 265 MKLSESIVDKLRAEGHFMSIHLRFEMDML 293 (546)
Q Consensus 265 ~~Lg~~lV~RLR~~GpfiAlHLR~E~DML 293 (546)
.++++.|.+.|.+.-.||.+|++....|.
T Consensus 20 ~~~s~~la~~lgKpe~~vmV~v~~~~~m~ 48 (113)
T d1hfoa_ 20 SSTSALVGNILSKPGSYVAVHINTDQQLS 48 (113)
T ss_dssp HHHHHHHHHHHTCCGGGCEEEEECSCEEE
T ss_pred HHHHHHHHHHHCCCHHHEEEEEcCCCcEE
Confidence 45666666777667789999999887764
No 10
>d1y0ya1 b.49.3.1 (A:73-163) Frv operon protein FrvX {Pyrococcus horikoshii [TaxId: 53953]}
Probab=11.57 E-value=51 Score=25.44 Aligned_cols=16 Identities=50% Similarity=0.870 Sum_probs=13.8
Q ss_pred CCCceEEEEecCCchh
Q 036966 112 ESNGYLRVRCNGGLNQ 127 (546)
Q Consensus 112 ~snGyL~V~~nGGLNq 127 (546)
..||||.|...||.+.
T Consensus 8 ~~~G~l~v~~vGG~~~ 23 (91)
T d1y0ya1 8 EKNGFLRVAPIGGVDP 23 (91)
T ss_dssp CTTSCEEEEEESSCCG
T ss_pred CCCCeEEEEecCCCCh
Confidence 4789999999999874
Done!