BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036967
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
WWKDLDF T LPYARDR+V+ + K I M SI+DDTFDAYG
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
+EL+ +T+A+QR+ I +D+LP+YMKI YKA+LD Y + E+ L+ GRS + +
Sbjct: 310 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 366
Query: 102 EKV 104
E++
Sbjct: 367 ERM 369
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
WWKDLDF T LPYARDR+V+ + K I M SI+DDTFDAYG
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
+EL+ +T+A+QR+ I +D+LP+YMKI YKA+LD Y + E+ L+ GRS + +
Sbjct: 310 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 366
Query: 102 EKV 104
E++
Sbjct: 367 ERM 369
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
WWKDLDF T LPYARDR+V+ + K I M SI+DDTFDAYG
Sbjct: 252 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 311
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
+EL+ +T+A+QR+ I +D+LP+YMKI YKA+LD Y + E+ L+ GRS + +
Sbjct: 312 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 368
Query: 102 EKV 104
E++
Sbjct: 369 ERM 371
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
WWKDLDF T LPYARDR+V+ + K I M SI+DDTFDAYG
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
+EL+ +T+A+QR+ I +D+LP+YMKI YKA+LD Y + E+ L+ GRS + +
Sbjct: 310 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 366
Query: 102 EKV 104
E++
Sbjct: 367 ERM 369
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
WWKDLDF T LPYARDR+V+ + K I M SI+DDTFDAYG
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
+EL+ +T+A+QR+ I +D+LP+YMKI YKA+LD Y + E+ L+ GRS + +
Sbjct: 310 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 366
Query: 102 EKV 104
E++
Sbjct: 367 ERM 369
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
WWKDLDF T LPYARDR+V+ + K I M SI+DDTFDAYG
Sbjct: 237 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 296
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
+EL+ +T+A+QR+ I +D+LP+YMKI YKA+LD Y + E+ L+ GRS + +
Sbjct: 297 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 353
Query: 102 EKV 104
E++
Sbjct: 354 ERM 356
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
WWKDLDF T LPYARDR+V+ + K I M SI+DDTFDAYG
Sbjct: 252 WWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 311
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
+EL+ +T+A+QR+ I +D+LP+YMKI YKA+LD Y + E+ L+ GRS + +
Sbjct: 312 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 368
Query: 102 EKV 104
E++
Sbjct: 369 ERM 371
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
WWKDLDF T LPYARDR+V+ + K I M SI+DDTFDAYG
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
+EL+ +T+A+QR+ I +D+LP+YMKI YKA+LD Y + E+ L+ GRS + +
Sbjct: 310 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 366
Query: 102 EKV 104
E++
Sbjct: 367 ERM 369
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
WWKDLDF T LPYARDR+V+ + K I M SI+DDTFDAYG
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
+EL+ +T+A+QR+ I +D+LP+YMKI YKA+LD Y + E+ L+ GRS + +
Sbjct: 310 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 366
Query: 102 EKV 104
E++
Sbjct: 367 ERM 369
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 22/120 (18%)
Query: 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
WWKDLDF KLPYARDR+V+ +TK+I M SI+DDT+D+Y
Sbjct: 256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
+EEL +T A++R+ I +D++PEYMK YKALLD Y E+ Q++A+ GR + Y K
Sbjct: 316 YEELIPYTNAIERWDI---KCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAK 372
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 22/103 (21%)
Query: 1 WWKDLDFSTKLPYARDRIV-------------------DQMTKLIYMTSIIDDTFDAYGI 41
WW+ + +TKL +ARDR++ + + K+ +IIDD +D YG
Sbjct: 254 WWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGT 313
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEI 84
+EL+LFT+AV+R+ + A++ LP+YMK+ + AL +T NEI
Sbjct: 314 LDELELFTDAVERWD---VNAINDLPDYMKLCFLALYNTINEI 353
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 22/103 (21%)
Query: 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
WW +LP+ RDRIV+ +TK+ + + IDD FD YG
Sbjct: 272 WWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGT 331
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEI 84
EEL+LFT A+QR+ I +M +LP YM+I Y AL + NE+
Sbjct: 332 LEELQLFTTAIQRWD---IESMKQLPPYMQICYLALFNFVNEM 371
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 22/96 (22%)
Query: 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
WW++ F KLP+ARDR+V+ M K+ + ++IDD +D YG
Sbjct: 245 WWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGT 304
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKAL 77
EEL+ FT+ ++R+ I ++D+LP+YM++ + AL
Sbjct: 305 LEELEQFTDLIRRWD---INSIDQLPDYMQLCFLAL 337
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 27/117 (23%)
Query: 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
WWK F T L + R+R+ + TK T I+DD +DA+G
Sbjct: 488 WWKSSGF-TDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGS 546
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLR 98
++LKLFTE+V+R+ + + D++P+ MKI + +T+N+I AKEGR R
Sbjct: 547 LDDLKLFTESVKRWDLSLV---DQMPQQMKICFVGFYNTFNDI----AKEGRERQGR 596
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
Query: 13 YARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKI 72
YA+ R + TK+ + +++DD +D YG +ELKLFTEAV+R+ + + + LP+YMK+
Sbjct: 548 YAKCRFL--FTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSF---TENLPDYMKL 602
Query: 73 LYKALLDTYNEIEQVLAKE-GR 93
Y+ D +E+ KE GR
Sbjct: 603 CYQIYYDIVHEVAWEAEKEQGR 624
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 22/123 (17%)
Query: 1 WWKDLDFSTKLPYARDRIVDQM-------------------TKLIYMTSIIDDTFDAYGI 41
WW L F KLP+ RDR+V+ +I + ++IDD +D YG
Sbjct: 251 WWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGT 310
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
+EL+LFT+ +R+ ++ +LP YM++ Y + + ++ + KE L+Y +
Sbjct: 311 LDELELFTDTFKRWD---TESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLR 367
Query: 102 EKV 104
+ V
Sbjct: 368 KSV 370
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 13 YARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKI 72
Y+ RI TK+ + + DD D + +ELK FTE V+R+ + ++PE M+
Sbjct: 489 YSATRIA--FTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWD---TSLLHEIPECMQT 543
Query: 73 LYKALLDTYNEIEQ-VLAKEGR 93
+K E+ V+ +GR
Sbjct: 544 CFKVWFKLMEEVNNDVVKVQGR 565
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKIL------YKALLDTYNEIEQVLAKEGRSS 95
++LK+ +V+R+K +IG +K+ + + + YK+LL+ N +E + E +
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE--TE 963
Query: 96 YLRYDKEKV 104
LR D E++
Sbjct: 964 KLRSDVERL 972
>pdb|1HXX|A Chain A, Ompf Porin Mutant Y106f
Length = 340
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%)
Query: 36 FDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSS 95
FDA G + L F F++G + + Y + L+D N Q L K R +
Sbjct: 106 FDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDT 165
Query: 96 YLRYDKEKVG 105
R + + VG
Sbjct: 166 ARRSNGDGVG 175
>pdb|3HN0|A Chain A, Crystal Structure Of An Abc Transporter (bdi_1369) From
Parabacteroides Distasonis At 1.75 A Resolution
pdb|3HN0|B Chain B, Crystal Structure Of An Abc Transporter (bdi_1369) From
Parabacteroides Distasonis At 1.75 A Resolution
Length = 283
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 35 TFDAYGIFEELKLFTEAVQRFKIFYIGAMD 64
+ + +GIF + L ++++R KI+Y+ A++
Sbjct: 220 SLEEHGIFAQGALTPKSIERCKIYYLSAIE 249
>pdb|1GFO|A Chain A, Ompf Porin (mutant R132p)
Length = 340
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 36 FDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSS 95
+DA G + L F F++G + + Y + L+D N Q L K R +
Sbjct: 106 YDALGYTDMLPEFGGDTAYSDDFFVGPVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDT 165
Query: 96 YLRYDKEKVG 105
R + + VG
Sbjct: 166 ARRSNGDGVG 175
>pdb|3HW9|A Chain A, Cation Selective Pathway Of Ompf Porin Revealed By
Anomalous X-Ray Diffraction
pdb|3HW9|B Chain B, Cation Selective Pathway Of Ompf Porin Revealed By
Anomalous X-Ray Diffraction
pdb|3HWB|A Chain A, Cation Selective Pathway Of Ompf Porin Revealed By
Anomalous Diffraction
pdb|3HWB|B Chain B, Cation Selective Pathway Of Ompf Porin Revealed By
Anomalous Diffraction
Length = 362
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 36 FDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSS 95
+DA G + L F F++G + + Y + L+D N Q L K R +
Sbjct: 128 YDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDT 187
Query: 96 YLRYDKEKVG 105
R + + VG
Sbjct: 188 ARRSNGDGVG 197
>pdb|4GCP|A Chain A, Crystal Structure Of E. Coli Ompf Porin In Complex With
Ampicillin
pdb|4GCP|B Chain B, Crystal Structure Of E. Coli Ompf Porin In Complex With
Ampicillin
pdb|4GCQ|A Chain A, Crystal Structure Of E. Coli Ompf Porin In Complex With
Carbenicillin
pdb|4GCQ|B Chain B, Crystal Structure Of E. Coli Ompf Porin In Complex With
Carbenicillin
pdb|4GCS|A Chain A, Crystal Structure Of E. Coli Ompf Porin In Complex With
Ertapenem
pdb|4GCS|B Chain B, Crystal Structure Of E. Coli Ompf Porin In Complex With
Ertapenem
Length = 341
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 36 FDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSS 95
+DA G + L F F++G + + Y + L+D N Q L K R +
Sbjct: 107 YDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDT 166
Query: 96 YLRYDKEKVG 105
R + + VG
Sbjct: 167 ARRSNGDGVG 176
>pdb|1OPF|A Chain A, The Structure Of Ompf Porin In A Tetragonal Crystal Form
pdb|1OPF|B Chain B, The Structure Of Ompf Porin In A Tetragonal Crystal Form
pdb|1OPF|C Chain C, The Structure Of Ompf Porin In A Tetragonal Crystal Form
pdb|1OPF|D Chain D, The Structure Of Ompf Porin In A Tetragonal Crystal Form
pdb|1OPF|E Chain E, The Structure Of Ompf Porin In A Tetragonal Crystal Form
pdb|1OPF|F Chain F, The Structure Of Ompf Porin In A Tetragonal Crystal Form
pdb|2OMF|A Chain A, Ompf Porin
pdb|2ZFG|A Chain A, Structure Of Ompf Porin
pdb|2ZLD|A Chain A, Structure Of Ompf Co-Crystallized With T83
pdb|2ZLD|B Chain B, Structure Of Ompf Co-Crystallized With T83
pdb|3K19|A Chain A, Ompf Porin
pdb|3K19|B Chain B, Ompf Porin
pdb|3K19|C Chain C, Ompf Porin
pdb|3K19|D Chain D, Ompf Porin
pdb|3K19|E Chain E, Ompf Porin
pdb|3K19|F Chain F, Ompf Porin
pdb|3K19|G Chain G, Ompf Porin
pdb|3K19|H Chain H, Ompf Porin
pdb|3K19|I Chain I, Ompf Porin
pdb|3K19|J Chain J, Ompf Porin
pdb|3K19|K Chain K, Ompf Porin
pdb|3K19|L Chain L, Ompf Porin
pdb|3K1B|A Chain A, Structure Of Ompf Porin
pdb|3K1B|B Chain B, Structure Of Ompf Porin
pdb|3K1B|C Chain C, Structure Of Ompf Porin
pdb|3K1B|D Chain D, Structure Of Ompf Porin
pdb|3O0E|A Chain A, Crystal Structure Of Ompf In Complex With Colicin Peptide
Obs1
pdb|3O0E|B Chain B, Crystal Structure Of Ompf In Complex With Colicin Peptide
Obs1
pdb|3O0E|C Chain C, Crystal Structure Of Ompf In Complex With Colicin Peptide
Obs1
pdb|3O0E|D Chain D, Crystal Structure Of Ompf In Complex With Colicin Peptide
Obs1
pdb|3O0E|E Chain E, Crystal Structure Of Ompf In Complex With Colicin Peptide
Obs1
pdb|3O0E|F Chain F, Crystal Structure Of Ompf In Complex With Colicin Peptide
Obs1
pdb|3POQ|A Chain A, Crystal Structure Of E.Coli Ompf Porin In Lipidic Cubic
Phase: Space Group H32, Small Unit Cell
pdb|3POU|A Chain A, Crystal Structure Of E.Coli Ompf Porin In Lipidic Cubic
Phase: Space Group H32, Large Unit Cell
pdb|3POX|A Chain A, Crystal Structure Of E.Coli Ompf Porin In Lipidic Cubic
Phase: Space Group P1
pdb|3POX|B Chain B, Crystal Structure Of E.Coli Ompf Porin In Lipidic Cubic
Phase: Space Group P1
pdb|3POX|C Chain C, Crystal Structure Of E.Coli Ompf Porin In Lipidic Cubic
Phase: Space Group P1
pdb|3POX|D Chain D, Crystal Structure Of E.Coli Ompf Porin In Lipidic Cubic
Phase: Space Group P1
pdb|3POX|E Chain E, Crystal Structure Of E.Coli Ompf Porin In Lipidic Cubic
Phase: Space Group P1
pdb|3POX|F Chain F, Crystal Structure Of E.Coli Ompf Porin In Lipidic Cubic
Phase: Space Group P1
Length = 340
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 36 FDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSS 95
+DA G + L F F++G + + Y + L+D N Q L K R +
Sbjct: 106 YDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDT 165
Query: 96 YLRYDKEKVG 105
R + + VG
Sbjct: 166 ARRSNGDGVG 175
>pdb|1BT9|A Chain A, Ompf Porin Mutant D74a
Length = 340
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 36 FDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSS 95
+DA G + L F F++G + + Y + L+D N Q L K R +
Sbjct: 106 YDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDT 165
Query: 96 YLRYDKEKVG 105
R + + VG
Sbjct: 166 ARRSNGDGVG 175
>pdb|1HXT|A Chain A, Ompf Porin Mutant Nqaaa
Length = 340
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 29/70 (41%)
Query: 36 FDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSS 95
+DA G L F F++GA+ + Y + L+D N Q L K R +
Sbjct: 106 YDALGYTNMLPQFGGDTAYSDDFFVGAVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDT 165
Query: 96 YLRYDKEKVG 105
R + + VG
Sbjct: 166 ARRSNGDGVG 175
>pdb|3LPX|A Chain A, Crystal Structure Of Gyra
pdb|3LPX|B Chain B, Crystal Structure Of Gyra
Length = 500
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 39 YGIFEELKLFT----EAVQRFKIFYIGAMDKLPEYMKIL--YKALLDTYNEIEQVLAKEG 92
YGI + L T +A+ +++ + M E+ KIL YKALLD E+ +LA
Sbjct: 411 YGIRDGLYYLTAEQAKAIVDLQLYKLSGM----EHDKILSEYKALLDLIAELMHILATPA 466
Query: 93 R 93
R
Sbjct: 467 R 467
>pdb|1MPF|A Chain A, Structural And Functional Alterations Of A Colicin
Resistant Mutant Of Ompf-porin From Escherichia Coli
Length = 340
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 36 FDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSS 95
+DA G + L F F++G + + Y + L+D N Q L K R +
Sbjct: 106 YDALGYTDMLPEFDGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDT 165
Query: 96 YLRYDKEKVG 105
R + + VG
Sbjct: 166 ARRSNGDGVG 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,017,186
Number of Sequences: 62578
Number of extensions: 109545
Number of successful extensions: 438
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 32
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)