Query 036967
Match_columns 106
No_of_seqs 104 out of 645
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:12:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02279 ent-kaur-16-ene synth 100.0 4.6E-33 1E-37 238.0 10.2 102 1-106 480-601 (784)
2 PLN02592 ent-copalyl diphospha 100.0 7E-31 1.5E-35 224.7 9.6 102 1-106 528-662 (800)
3 cd00684 Terpene_cyclase_plant_ 100.0 1.8E-29 4E-34 208.5 9.2 103 1-106 246-367 (542)
4 cd00868 Terpene_cyclase_C1 Ter 99.5 4.2E-14 9E-19 105.9 9.6 102 1-105 12-132 (284)
5 PF03936 Terpene_synth_C: Terp 99.3 1.9E-12 4.1E-17 96.3 4.3 102 1-105 26-147 (270)
6 cd00687 Terpene_cyclase_nonpla 97.2 0.00066 1.4E-08 51.8 5.2 65 21-88 61-126 (303)
7 cd00385 Isoprenoid_Biosyn_C1 I 90.9 0.54 1.2E-05 32.8 4.6 57 21-86 18-74 (243)
8 PF14165 YtzH: YtzH-like prote 76.6 12 0.00026 24.6 5.5 49 26-79 8-57 (87)
9 PF15602 Imm43: Immunity prote 63.7 31 0.00067 25.3 5.9 75 13-96 5-81 (171)
10 KOG2099 Glycogen phosphorylase 56.8 12 0.00026 32.9 3.1 37 48-87 381-418 (843)
11 PF00156 Pribosyltran: Phospho 54.3 5.6 0.00012 25.8 0.6 20 30-49 92-111 (125)
12 TIGR00636 PduO_Nterm ATP:cob(I 53.8 8.1 0.00017 28.2 1.4 20 33-52 22-41 (171)
13 PF06883 RNA_pol_Rpa2_4: RNA p 53.2 3.8 8.3E-05 24.8 -0.3 33 39-74 3-35 (58)
14 PF14769 CLAMP: Flagellar C1a 53.0 36 0.00077 22.2 4.4 69 11-80 4-79 (101)
15 PRK09177 xanthine-guanine phos 51.6 5.9 0.00013 28.0 0.4 23 29-51 87-109 (156)
16 COG2236 Predicted phosphoribos 48.0 6.7 0.00014 29.2 0.2 22 30-51 91-112 (192)
17 PF11433 DUF3198: Protein of u 47.0 52 0.0011 19.4 3.9 28 78-105 20-49 (51)
18 TIGR00201 comF comF family pro 43.8 4.5 9.8E-05 29.2 -1.2 19 29-47 155-173 (190)
19 COG4755 Uncharacterized protei 41.8 94 0.002 22.2 5.2 36 41-91 9-44 (151)
20 COG1040 ComFC Predicted amidop 41.4 8.7 0.00019 28.8 -0.0 21 29-49 187-207 (225)
21 PRK11595 DNA utilization prote 40.2 8.4 0.00018 28.6 -0.3 19 29-47 190-208 (227)
22 PRK09162 hypoxanthine-guanine 36.1 15 0.00034 26.4 0.6 21 29-49 100-120 (181)
23 TIGR01090 apt adenine phosphor 34.6 11 0.00024 26.6 -0.4 22 29-50 112-133 (169)
24 PF09288 UBA_3: Fungal ubiquit 34.1 19 0.00041 21.7 0.6 18 10-27 18-35 (55)
25 PRK02304 adenine phosphoribosy 33.8 21 0.00047 25.2 1.0 22 29-50 117-138 (175)
26 PRK05205 bifunctional pyrimidi 33.5 19 0.0004 25.7 0.7 20 29-48 98-117 (176)
27 PRK09441 cytoplasmic alpha-amy 32.9 39 0.00085 27.8 2.6 19 38-56 76-94 (479)
28 PF13060 DUF3921: Protein of u 31.8 77 0.0017 18.9 3.0 23 70-92 6-28 (58)
29 TIGR01203 HGPRTase hypoxanthin 31.8 21 0.00045 25.3 0.7 21 29-49 87-107 (166)
30 PF01923 Cob_adeno_trans: Coba 30.2 41 0.00089 23.8 2.0 20 35-54 25-44 (163)
31 TIGR01367 pyrE_Therm orotate p 28.6 17 0.00037 26.4 -0.2 21 29-49 108-128 (187)
32 COG4572 ChaB Putative cation t 28.6 45 0.00098 21.3 1.7 20 64-83 15-34 (76)
33 PF06595 BDV_P24: Borna diseas 28.2 92 0.002 23.1 3.5 31 48-80 118-148 (201)
34 PRK07322 adenine phosphoribosy 27.9 28 0.00061 24.9 0.8 20 29-48 123-142 (178)
35 PRK15423 hypoxanthine phosphor 27.4 18 0.0004 26.1 -0.2 21 30-50 96-116 (178)
36 TIGR00336 pyrE orotate phospho 26.7 20 0.00043 25.5 -0.2 22 29-50 111-132 (173)
37 smart00642 Aamy Alpha-amylase 25.6 63 0.0014 22.9 2.3 19 38-56 65-83 (166)
38 PF00128 Alpha-amylase: Alpha 25.6 51 0.0011 24.0 1.9 20 37-56 46-65 (316)
39 KOG2254 Predicted endo-1,3-bet 24.7 1.1E+02 0.0023 27.3 3.8 36 21-56 421-457 (747)
40 PLN02238 hypoxanthine phosphor 24.3 21 0.00045 26.0 -0.5 20 30-49 101-120 (189)
41 PF06394 Pepsin-I3: Pepsin inh 24.2 65 0.0014 20.6 1.9 30 42-74 45-74 (76)
42 PRK13812 orotate phosphoribosy 23.2 46 0.00099 24.0 1.2 21 30-50 111-131 (176)
43 PRK07199 phosphoribosylpyropho 22.9 39 0.00084 26.5 0.8 20 29-48 214-233 (301)
44 PRK00455 pyrE orotate phosphor 22.7 29 0.00063 25.2 0.1 23 29-51 116-138 (202)
45 PLN02297 ribose-phosphate pyro 22.2 39 0.00085 27.0 0.7 21 29-49 233-253 (326)
46 TIGR03209 P21_Cbot clostridium 22.1 1.1E+02 0.0023 20.2 2.8 30 60-89 102-134 (142)
47 PF12881 NUT_N: NUT protein N 21.6 1E+02 0.0022 24.9 2.9 56 22-87 230-287 (328)
48 COG2096 cob(I)alamin adenosylt 21.3 1.4E+02 0.0031 22.1 3.5 20 34-53 30-49 (184)
49 PF00616 RasGAP: GTPase-activa 21.2 2.3E+02 0.005 19.8 4.5 24 61-84 115-138 (197)
50 PRK08558 adenine phosphoribosy 20.8 50 0.0011 25.0 1.0 23 29-51 179-201 (238)
51 cd07177 terB_like tellurium re 20.4 2E+02 0.0043 17.4 3.7 38 37-74 13-50 (104)
52 cd01709 RT_like_1 RT_like_1: A 20.1 2.9E+02 0.0062 22.5 5.2 30 76-105 250-282 (346)
No 1
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=4.6e-33 Score=237.99 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=96.5
Q ss_pred CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG 61 (106)
Q Consensus 1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~ 61 (106)
|||++|| .+|||||||+|| ++||+++|+|++||+||+|||+|||++||+|||||| ++
T Consensus 480 Wwke~~L-~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD---~~ 555 (784)
T PLN02279 480 WIVENRL-DKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWD---VN 555 (784)
T ss_pred eHHhcCC-ccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhc---cc
Confidence 9999999 699999999999 999999999999999999999999999999999999 88
Q ss_pred -ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967 62 -AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN 106 (106)
Q Consensus 62 -~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~ 106 (106)
.+++||+|||+||.+|++++|||+.++.+.+|+++++|++++|++
T Consensus 556 ~~~~~lpeymki~f~aL~~t~nei~~~~~~~qGr~v~~~l~~aW~~ 601 (784)
T PLN02279 556 GSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGRNVTSHIIKIWLD 601 (784)
T ss_pred cchhhCcHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 679999999999999999999999996656667999999999973
No 2
>PLN02592 ent-copalyl diphosphate synthase
Probab=99.97 E-value=7e-31 Score=224.70 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=98.1
Q ss_pred CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHh--------
Q 036967 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQ-------- 53 (106)
Q Consensus 1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~ave-------- 53 (106)
|||++|| .+|||||||+|| ++||+++|+|++||+||+|||+|||++||++|+
T Consensus 528 Wwke~~L-~~L~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~ 606 (800)
T PLN02592 528 WYEECNL-GEFGVSRSELLLAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGR 606 (800)
T ss_pred HHHhcCC-CcCCcchhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhccccccc
Confidence 9999999 599999999999 999999999999999999999999999999997
Q ss_pred hhhhccccccccCCH------HHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967 54 RFKIFYIGAMDKLPE------YMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN 106 (106)
Q Consensus 54 RWd~~~~~~~~~lp~------~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~ 106 (106)
||| .+++++||+ |||+||.+|++|+|||+.++.+.+|+++++|++++|.+
T Consensus 607 rWd---~~~~~~lp~~~~~~~~mki~f~aLy~tineia~~a~~~qGr~v~~~L~~~W~~ 662 (800)
T PLN02592 607 RSD---HHFNDRNMRRSGSVKTGEELVGLLLGTLNQLSLDALEAHGRDISHLLRHAWEM 662 (800)
T ss_pred ccC---chhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 999 999999988 99999999999999999998888899999999999963
No 3
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=99.96 E-value=1.8e-29 Score=208.45 Aligned_cols=103 Identities=58% Similarity=0.999 Sum_probs=100.3
Q ss_pred CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG 61 (106)
Q Consensus 1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~ 61 (106)
||+++||.++|||+|+|++| ++||.+++++++||+||+|||+|||+.||+||+||| ++
T Consensus 246 Wwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd---~~ 322 (542)
T cd00684 246 WWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWD---IS 322 (542)
T ss_pred HHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhcc---cc
Confidence 99999999999999999999 999999999999999999999999999999999999 99
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967 62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN 106 (106)
Q Consensus 62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~ 106 (106)
++++||+|||+||.+|+++++++++++.++||++.+.++++.|++
T Consensus 323 ~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~ 367 (542)
T cd00684 323 AIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKD 367 (542)
T ss_pred chhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999963
No 4
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=99.54 E-value=4.2e-14 Score=105.94 Aligned_cols=102 Identities=57% Similarity=0.952 Sum_probs=92.5
Q ss_pred CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG 61 (106)
Q Consensus 1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~ 61 (106)
||+++|+....+++|.+..+ ++||.+.++.++||.||.+|+.+|+..++++++||+ .+
T Consensus 12 W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~~~~~~~---~~ 88 (284)
T cd00868 12 WWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTEAVERWD---IS 88 (284)
T ss_pred HHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHhcC---hh
Confidence 88999997666688888777 999999999999999999999999999999999999 99
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhh
Q 036967 62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVG 105 (106)
Q Consensus 62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~ 105 (106)
..+.+|++++.++.+++++.+++.+.+.+++|......+++.|.
T Consensus 89 ~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~ 132 (284)
T cd00868 89 AIDELPEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLKEAWK 132 (284)
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 99999999999999999999999999888777777777777764
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=99.30 E-value=1.9e-12 Score=96.31 Aligned_cols=102 Identities=28% Similarity=0.399 Sum_probs=88.0
Q ss_pred CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967 1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG 61 (106)
Q Consensus 1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~ 61 (106)
||+++|+..+.+.+|+|++. ++||.+..+.++||.||..|+.++++.|+++++||+ +.
T Consensus 26 W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~D~~~~~~~~~~l~~~~~~~~---~~ 102 (270)
T PF03936_consen 26 WVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFFDDGGSAEELEALTDAVERWD---PN 102 (270)
T ss_dssp HHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTS---SG
T ss_pred HHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeeccccccchHHHHHHHHHHhccc---cc
Confidence 88889986677778888888 899999999999999999999999999999999999 88
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCC-ccHHHHHHHHhh
Q 036967 62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGR-SSYLRYDKEKVG 105 (106)
Q Consensus 62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~-~~~~~~~~~~~~ 105 (106)
....+|++++.++.++.++++++...+.+.++ +...+++++.|.
T Consensus 103 ~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~ 147 (270)
T PF03936_consen 103 SGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWR 147 (270)
T ss_dssp GGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHH
Confidence 88899999999999999999999888776633 335555666553
No 6
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=97.23 E-value=0.00066 Score=51.77 Aligned_cols=65 Identities=15% Similarity=0.040 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhccccccc-CCHHHHHHHHHHHhhhhhccccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 036967 21 QMTKLIYMTSIIDDTFDAY-GIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVL 88 (106)
Q Consensus 21 ~~tK~~~l~tilDD~yD~y-gt~eEl~~ft~aveRWd~~~~~~~~~lp~~mki~f~~l~~t~~ei~~~~ 88 (106)
+.++.+..+.++||.||.. ++.+++..+++.+.++. ......-|.....+..++.+....+....
T Consensus 61 l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~d~~~r~~~~~ 126 (303)
T cd00687 61 LAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDIL---RGDGLDSPDDATPLEFGLADLWRRTLARM 126 (303)
T ss_pred HHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhcc---CCCCCCCCCCCCHHHHHHHHHHHHhccCC
Confidence 7899999999999999998 49999999998888865 43211114667777777777777775553
No 7
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=90.90 E-value=0.54 Score=32.83 Aligned_cols=57 Identities=28% Similarity=0.294 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhccccccccCCHHHHHHHHHHHHHHHHHHH
Q 036967 21 QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQ 86 (106)
Q Consensus 21 ~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~~~~~lp~~mki~f~~l~~t~~ei~~ 86 (106)
.++++.....++||++|..++..+.......++ ....|..+...+..+...++++.+
T Consensus 18 ~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 74 (243)
T cd00385 18 AVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVA---------IDGLPEAILAGDLLLADAFEELAR 74 (243)
T ss_pred HHHHHHHHHHHHhhcccCCCCCCCchhhhhhHH---------hcCchHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999988777655444321 123455555555555555555543
No 8
>PF14165 YtzH: YtzH-like protein
Probab=76.60 E-value=12 Score=24.64 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=34.0
Q ss_pred HHHHHhhccc-ccccCCHHHHHHHHHHHhhhhhccccccccCCHHHHHHHHHHHH
Q 036967 26 IYMTSIIDDT-FDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLD 79 (106)
Q Consensus 26 ~~l~tilDD~-yD~ygt~eEl~~ft~aveRWd~~~~~~~~~lp~~mki~f~~l~~ 79 (106)
..|--++.+= -|++||..|++.+...|+. .-+=..++..+|-+...+|+
T Consensus 8 ~LLkDIL~~hq~DccgTvsEcEQieRLvks-----Lm~n~~i~~~ik~~L~~Iy~ 57 (87)
T PF14165_consen 8 TLLKDILSNHQLDCCGTVSECEQIERLVKS-----LMANPNIDADIKQTLEEIYS 57 (87)
T ss_pred HHHHHHHHhhhhhccCcHHHHHHHHHHHHH-----HHcCCCcCHHHHHHHHHHHH
Confidence 3344444443 7999999999988888776 33445678888877766654
No 9
>PF15602 Imm43: Immunity protein 43
Probab=63.69 E-value=31 Score=25.35 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=47.5
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhccccccccCCHHHHHHHHHHHHHHHHHHHH--HHH
Q 036967 13 YARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQV--LAK 90 (106)
Q Consensus 13 f~Rdr~ve~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~~~~~lp~~mki~f~~l~~t~~ei~~~--~~~ 90 (106)
.+|.|+.-.+-|... .|..+...|.|.+. +..+-.+|++|. .+.-+.+|+. .|..+++.+..+|+. ...
T Consensus 5 ~~RrkiF~LLKr~TS-~T~w~r~~d~y~~F--~~~~E~~v~~~p---~~d~~~~~~~---~~~~il~~La~~e~Gl~~L~ 75 (171)
T PF15602_consen 5 DERRKIFWLLKRYTS-FTLWNRARDLYRDF--ADAYERAVRTWP---ENDPEEMPAD---DYVRILNILAHMERGLRRLR 75 (171)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHHHHH--HHHHHHHHhcCC---CCCcccCcHH---HHHHHHHHHHHHHHHHHHHh
Confidence 578888855544444 67888888888665 445778899988 6555555432 244455666666665 344
Q ss_pred hCCccH
Q 036967 91 EGRSSY 96 (106)
Q Consensus 91 ~~~~~~ 96 (106)
+|++++
T Consensus 76 ~G~r~v 81 (171)
T PF15602_consen 76 RGDRSV 81 (171)
T ss_pred cCCcee
Confidence 455443
No 10
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=56.80 E-value=12 Score=32.91 Aligned_cols=37 Identities=24% Similarity=0.499 Sum_probs=27.8
Q ss_pred HHHHHhhhhhccccccccC-CHHHHHHHHHHHHHHHHHHHH
Q 036967 48 FTEAVQRFKIFYIGAMDKL-PEYMKILYKALLDTYNEIEQV 87 (106)
Q Consensus 48 ft~aveRWd~~~~~~~~~l-p~~mki~f~~l~~t~~ei~~~ 87 (106)
+-+|+|||- .+.++.| |.++.|+|..=...++.+...
T Consensus 381 lpEALErWp---~~L~e~LLPRHleIIy~In~~~l~~i~~~ 418 (843)
T KOG2099|consen 381 LPEALERWP---VSLMEKLLPRHLEIIYEINQRFLQTVAAK 418 (843)
T ss_pred cHHHHHHhh---HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 447899999 9988865 999999998755555555443
No 11
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=54.33 E-value=5.6 Score=25.85 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=16.3
Q ss_pred HhhcccccccCCHHHHHHHH
Q 036967 30 SIIDDTFDAYGIFEELKLFT 49 (106)
Q Consensus 30 tilDD~yD~ygt~eEl~~ft 49 (106)
.++||++|+.+|+.++..+.
T Consensus 92 liVDDvi~tG~Tl~~~~~~L 111 (125)
T PF00156_consen 92 LIVDDVIDTGGTLKEAIELL 111 (125)
T ss_dssp EEEEEEESSSHHHHHHHHHH
T ss_pred EEEeeeEcccHHHHHHHHHH
Confidence 47999999999988876543
No 12
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=53.79 E-value=8.1 Score=28.17 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=16.8
Q ss_pred cccccccCCHHHHHHHHHHH
Q 036967 33 DDTFDAYGIFEELKLFTEAV 52 (106)
Q Consensus 33 DD~yD~ygt~eEl~~ft~av 52 (106)
|..+++|||+|||..++-.+
T Consensus 22 d~riea~Gt~DElns~iGl~ 41 (171)
T TIGR00636 22 SPRVEAYGTLDELNSFIGVA 41 (171)
T ss_pred CccceehhhHHHHHHHHHHH
Confidence 45689999999999888765
No 13
>PF06883 RNA_pol_Rpa2_4: RNA polymerase I, Rpa2 specific domain ; InterPro: IPR009674 This domain is found between domain 3 and domain 5, but shows no homology to domain 4 of Rpb2. The external domains in multisubunit RNA polymerase (those most distant from the active site) are known to demonstrate more sequence variability [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus
Probab=53.22 E-value=3.8 Score=24.79 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=27.0
Q ss_pred cCCHHHHHHHHHHHhhhhhccccccccCCHHHHHHH
Q 036967 39 YGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILY 74 (106)
Q Consensus 39 ygt~eEl~~ft~aveRWd~~~~~~~~~lp~~mki~f 74 (106)
|.+.++++.+.+.+.+|. .+.-..+|..+.|.|
T Consensus 3 ~~~~~~a~~~~~~LR~~K---v~~~~~vP~~lEI~~ 35 (58)
T PF06883_consen 3 YVSPEEAEQIADQLRYLK---VEGEHGVPPTLEIGY 35 (58)
T ss_pred eecHHHHHHHHHHHHHHH---HcCCCCCCCceEEEE
Confidence 457889999999999999 776778888876654
No 14
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=53.03 E-value=36 Score=22.17 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=41.5
Q ss_pred CCchhHHHHHHHHHHHHHHHhhccccc----ccCCHHHH-HHHHHHHhhhhhccc-cccccC-CHHHHHHHHHHHHH
Q 036967 11 LPYARDRIVDQMTKLIYMTSIIDDTFD----AYGIFEEL-KLFTEAVQRFKIFYI-GAMDKL-PEYMKILYKALLDT 80 (106)
Q Consensus 11 l~f~Rdr~ve~~tK~~~l~tilDD~yD----~ygt~eEl-~~ft~aveRWd~~~~-~~~~~l-p~~mki~f~~l~~t 80 (106)
+-|||++-. -+.|.+++.+++++++. ...+++|+ +.|-+.+-+.....| ..++-. ++.+|.+-.-+.++
T Consensus 4 ~~Fa~~~~f-s~~q~s~~~~i~~~ll~~~i~~~~~~~~~~~~fk~~l~~~sv~rpp~~~~iFs~~~~~~i~~y~~~t 79 (101)
T PF14769_consen 4 FLFAKEQGF-SWEQTSAFLSILKELLEKNIEKGMSLEDSFKYFKELLLRHSVQRPPFSIGIFSVDQVKAIIDYFHNT 79 (101)
T ss_pred hHhHhhCCC-CHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHhccCCCCcccCcCCHHHHHHHHHHHHHH
Confidence 446666665 77889999999999988 77788887 445555544321001 122222 45555555555554
No 15
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=51.58 E-value=5.9 Score=28.03 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=18.9
Q ss_pred HHhhcccccccCCHHHHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLFTEA 51 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~ft~a 51 (106)
+.++||+.|+.+|+.++..+...
T Consensus 87 VLIVDDIiDTG~Tl~~v~~~l~~ 109 (156)
T PRK09177 87 FLVVDDLVDTGGTARAVREMYPK 109 (156)
T ss_pred EEEEeeeeCCHHHHHHHHHHHhh
Confidence 34789999999999999876543
No 16
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=48.03 E-value=6.7 Score=29.16 Aligned_cols=22 Identities=23% Similarity=0.095 Sum_probs=18.4
Q ss_pred HhhcccccccCCHHHHHHHHHH
Q 036967 30 SIIDDTFDAYGIFEELKLFTEA 51 (106)
Q Consensus 30 tilDD~yD~ygt~eEl~~ft~a 51 (106)
.++||+.|+..|++.+..+.+.
T Consensus 91 LIVDDI~DTG~Tl~~a~~~l~~ 112 (192)
T COG2236 91 LIVDDIVDTGETLELALEELKK 112 (192)
T ss_pred EEEecccCchHhHHHHHHHHHh
Confidence 4799999999999988766554
No 17
>PF11433 DUF3198: Protein of unknown function (DUF3198); InterPro: IPR024504 This domain is found at the C-terminal of a family of archaeal proteins annotated as membrane proteins.; PDB: 1X9B_A.
Probab=47.00 E-value=52 Score=19.40 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhCCccH--HHHHHHHhh
Q 036967 78 LDTYNEIEQVLAKEGRSSY--LRYDKEKVG 105 (106)
Q Consensus 78 ~~t~~ei~~~~~~~~~~~~--~~~~~~~~~ 105 (106)
++.++|+|+-..+-|++|. ++-.++.|+
T Consensus 20 v~nL~ELE~is~rlg~~Y~~~LeeaK~kWk 49 (51)
T PF11433_consen 20 VRNLTELERISKRLGKSYQIRLEEAKEKWK 49 (51)
T ss_dssp HHHHHHHHHHHHHH-SHHHHHHHHHHHHH-
T ss_pred HHhHHHHHHHHHHHchHHHHHHHHHHHhhc
Confidence 4556666666666777764 567888886
No 18
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=43.77 E-value=4.5 Score=29.15 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=16.6
Q ss_pred HHhhcccccccCCHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKL 47 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~ 47 (106)
+.++||+|.+.+|+.|+..
T Consensus 155 vllvDDV~TTGaTl~~~~~ 173 (190)
T TIGR00201 155 IVLVDDVVTTGATLHEIAR 173 (190)
T ss_pred EEEEeeeeccHHHHHHHHH
Confidence 5679999999999999864
No 19
>COG4755 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.75 E-value=94 Score=22.19 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHhhhhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 036967 41 IFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKE 91 (106)
Q Consensus 41 t~eEl~~ft~aveRWd~~~~~~~~~lp~~mki~f~~l~~t~~ei~~~~~~~ 91 (106)
.++-+.+|+..+++|- .+=+.++.+++.+++.+...
T Consensus 9 ~~~~~~sf~~~Le~Wv---------------klQk~~l~~lk~~~~~~k~~ 44 (151)
T COG4755 9 VLEYLESFMERLEQWV---------------KLQKRQLKELKSHGEHMKVA 44 (151)
T ss_pred HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhHHHHhhHH
Confidence 4667889999999987 55566677777776654443
No 20
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=41.43 E-value=8.7 Score=28.84 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=17.4
Q ss_pred HHhhcccccccCCHHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLFT 49 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~ft 49 (106)
+.++||+|-+++|+.|+....
T Consensus 187 vlLvDDV~TTGaTl~~~~~~L 207 (225)
T COG1040 187 VLLVDDVYTTGATLKEAAKLL 207 (225)
T ss_pred EEEEecccccHHHHHHHHHHH
Confidence 567999999999999986443
No 21
>PRK11595 DNA utilization protein GntX; Provisional
Probab=40.22 E-value=8.4 Score=28.65 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.5
Q ss_pred HHhhcccccccCCHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKL 47 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~ 47 (106)
+.++||++++.+|+.|+..
T Consensus 190 vllvDDv~tTG~Tl~~~~~ 208 (227)
T PRK11595 190 MAIVDDVVTTGSTVAEIAQ 208 (227)
T ss_pred EEEEeeeecchHHHHHHHH
Confidence 5689999999999988854
No 22
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=36.07 E-value=15 Score=26.35 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=17.1
Q ss_pred HHhhcccccccCCHHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLFT 49 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~ft 49 (106)
+.++||+.|+..|+.++....
T Consensus 100 VLIVDDIidTG~Tl~~~~~~L 120 (181)
T PRK09162 100 VLVVDDILDEGHTLAAIRDRC 120 (181)
T ss_pred EEEEccccCcHHHHHHHHHHH
Confidence 346899999999999887543
No 23
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=34.57 E-value=11 Score=26.62 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=17.7
Q ss_pred HHhhcccccccCCHHHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLFTE 50 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~ft~ 50 (106)
+.++||++++.+|+.++.....
T Consensus 112 VLIVDDIitTG~Tl~~a~~~L~ 133 (169)
T TIGR01090 112 VLIVDDLLATGGTAEATDELIR 133 (169)
T ss_pred EEEEeccccchHHHHHHHHHHH
Confidence 4578999999999999865543
No 24
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=34.13 E-value=19 Score=21.75 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=11.0
Q ss_pred CCCchhHHHHHHHHHHHH
Q 036967 10 KLPYARDRIVDQMTKLIY 27 (106)
Q Consensus 10 ~l~f~Rdr~ve~~tK~~~ 27 (106)
.++|.|+++||++.++.+
T Consensus 18 ~mGF~~dkVvevlrrlgi 35 (55)
T PF09288_consen 18 NMGFERDKVVEVLRRLGI 35 (55)
T ss_dssp HHT--HHHHHHHHHHS--
T ss_pred HcCCcHHHHHHHHHHhCC
Confidence 467889999987766553
No 25
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=33.78 E-value=21 Score=25.25 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=17.5
Q ss_pred HHhhcccccccCCHHHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLFTE 50 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~ft~ 50 (106)
+.++||++++.+|+.++.....
T Consensus 117 VLIVDDivtTG~Tl~~~~~~l~ 138 (175)
T PRK02304 117 VLIVDDLLATGGTLEAAIKLLE 138 (175)
T ss_pred EEEEeCCccccHHHHHHHHHHH
Confidence 4579999999999888865543
No 26
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=33.49 E-value=19 Score=25.69 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=16.6
Q ss_pred HHhhcccccccCCHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLF 48 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~f 48 (106)
+.++||+.|+.+|+.++...
T Consensus 98 VLIVDDIidTG~Tl~~~~~~ 117 (176)
T PRK05205 98 VILVDDVLYTGRTIRAALDA 117 (176)
T ss_pred EEEEecccCcHHHHHHHHHH
Confidence 46799999999998887544
No 27
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=32.93 E-value=39 Score=27.79 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=16.7
Q ss_pred ccCCHHHHHHHHHHHhhhh
Q 036967 38 AYGIFEELKLFTEAVQRFK 56 (106)
Q Consensus 38 ~ygt~eEl~~ft~aveRWd 56 (106)
.|||.+||+.|+++..+=.
T Consensus 76 ~fGt~~dl~~Li~~~H~~G 94 (479)
T PRK09441 76 KYGTKEELLNAIDALHENG 94 (479)
T ss_pred CcCCHHHHHHHHHHHHHCC
Confidence 7899999999999998633
No 28
>PF13060 DUF3921: Protein of unknown function (DUF3921)
Probab=31.84 E-value=77 Score=18.89 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 036967 70 MKILYKALLDTYNEIEQVLAKEG 92 (106)
Q Consensus 70 mki~f~~l~~t~~ei~~~~~~~~ 92 (106)
|.++=+++..|+.|+.+++..+|
T Consensus 6 lsmiqkaih~tydelgkei~~~g 28 (58)
T PF13060_consen 6 LSMIQKAIHRTYDELGKEIDLQG 28 (58)
T ss_pred HHHHHHHHHHhHHHHhHHhhhcc
Confidence 45677889999999999988875
No 29
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=31.83 E-value=21 Score=25.34 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=17.4
Q ss_pred HHhhcccccccCCHHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLFT 49 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~ft 49 (106)
+.++||+.|+.+|+.++....
T Consensus 87 vlivDDii~TG~Tl~~~~~~l 107 (166)
T TIGR01203 87 VLIVEDIVDTGLTLQYLLDLL 107 (166)
T ss_pred EEEEeeeeCcHHHHHHHHHHH
Confidence 457999999999999986543
No 30
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=30.19 E-value=41 Score=23.82 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=15.6
Q ss_pred cccccCCHHHHHHHHHHHhh
Q 036967 35 TFDAYGIFEELKLFTEAVQR 54 (106)
Q Consensus 35 ~yD~ygt~eEl~~ft~aveR 54 (106)
..+.||++|||..++-.+..
T Consensus 25 rie~~G~lDEl~a~igla~~ 44 (163)
T PF01923_consen 25 RIEAYGTLDELNAFIGLARS 44 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eeeeeeeHHHHHHHHHHHHH
Confidence 36789999999988776543
No 31
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=28.65 E-value=17 Score=26.43 Aligned_cols=21 Identities=14% Similarity=0.040 Sum_probs=17.5
Q ss_pred HHhhcccccccCCHHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLFT 49 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~ft 49 (106)
+.++||+.|+.+|+.++....
T Consensus 108 VLIVDDIi~TG~Tl~~a~~~l 128 (187)
T TIGR01367 108 FVAVEDVVTTGGSLLEAIRAI 128 (187)
T ss_pred EEEEEeeecchHHHHHHHHHH
Confidence 457999999999999887554
No 32
>COG4572 ChaB Putative cation transport regulator [General function prediction only]
Probab=28.63 E-value=45 Score=21.26 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.4
Q ss_pred ccCCHHHHHHHHHHHHHHHH
Q 036967 64 DKLPEYMKILYKALLDTYNE 83 (106)
Q Consensus 64 ~~lp~~mki~f~~l~~t~~e 83 (106)
.+||...+++|.+.+|.--+
T Consensus 15 ~~lp~haqdiy~~afnsA~e 34 (76)
T COG4572 15 HQLPSHAQDIYKAAFNSAWE 34 (76)
T ss_pred HHhHHHHHHHHHHHHHHHHh
Confidence 47899999999999887444
No 33
>PF06595 BDV_P24: Borna disease virus P24 protein; InterPro: IPR009517 Borna disease virus (BDV) is a non-cytolytic, neurotropic RNA virus that has a broad host range in warm-blooded animals. BDV is an enveloped virus, non-segmented, negative-stranded RNA genome and has an organisation characteristic of a member of Bornaviridae in the order of Mononegavirale. This family consists of several BDV P24 (phosphoprotein 24) proteins. They are essential components of the RNA polymerase transcription and replication complex. P24 is encoded by open reading frame II (ORF-II) and undergoes high rates of mutation in humans. They bind amphoterin-HMGB1, a multifunctional protein, directly may cause deleterious effects in cellular functions by its interference with HMGB1 []. Horse and human P24 have no species-specific amino acid residues, suggesting that the two viruses related [, ]. Numerous interactions of the immune system with the central nervous system have been described. Mood and psychotic disorders, such as severe depression and schizophrenia, are both heterogeneous disorders regarding clinical symptomatology, the acuity of symptoms, the clinical course and the treatment response []. BDV p24 RNA has been detected in the peripheral blood mononuclear cells (PBMCs) of psychiatric patients with such conditions []. Some studies find a significant difference in the prevalence of BDV p24 RNA in patients with mood disorders and schizophrenia [], whilst others find no difference between patients and control groups []. Consequently, debate about the role of BDV in psychiatric diseases remains alive.
Probab=28.20 E-value=92 Score=23.07 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=24.9
Q ss_pred HHHHHhhhhhccccccccCCHHHHHHHHHHHHH
Q 036967 48 FTEAVQRFKIFYIGAMDKLPEYMKILYKALLDT 80 (106)
Q Consensus 48 ft~aveRWd~~~~~~~~~lp~~mki~f~~l~~t 80 (106)
..++||+-| |.+.+..|.++||++=+.+-..
T Consensus 118 tl~~iq~~D--ya~SIk~lGEN~kvLDRS~Ktm 148 (201)
T PF06595_consen 118 TLQAIQQSD--YADSIKQLGENIKVLDRSMKTM 148 (201)
T ss_pred HHHHHHhhc--hhHHHHHHcchhhHHHHHHHHH
Confidence 458999977 5789999999999987765433
No 34
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=27.93 E-value=28 Score=24.92 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=16.6
Q ss_pred HHhhcccccccCCHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLF 48 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~f 48 (106)
+.++||++++.+|+.++...
T Consensus 123 VLIVDDiitTG~Tl~aa~~~ 142 (178)
T PRK07322 123 VAIVDDVVSTGGTLTALERL 142 (178)
T ss_pred EEEEeccccccHHHHHHHHH
Confidence 45799999999999887644
No 35
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=27.37 E-value=18 Score=26.14 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=17.5
Q ss_pred HhhcccccccCCHHHHHHHHH
Q 036967 30 SIIDDTFDAYGIFEELKLFTE 50 (106)
Q Consensus 30 tilDD~yD~ygt~eEl~~ft~ 50 (106)
.++||+.|+..|+..+..+..
T Consensus 96 LlVDDIiDTG~TL~~l~~~l~ 116 (178)
T PRK15423 96 LIVEDIIDSGNTLSKVREILS 116 (178)
T ss_pred EEEeeecCchHHHHHHHHHHH
Confidence 469999999999998876643
No 36
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=26.65 E-value=20 Score=25.52 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=17.5
Q ss_pred HHhhcccccccCCHHHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLFTE 50 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~ft~ 50 (106)
+.++||+.++.||+.++....+
T Consensus 111 VlIVDDvi~TG~Tl~~a~~~l~ 132 (173)
T TIGR00336 111 VVVVEDVITTGTSILEAVEIIQ 132 (173)
T ss_pred EEEEeccccChHHHHHHHHHHH
Confidence 4579999999999888865443
No 37
>smart00642 Aamy Alpha-amylase domain.
Probab=25.62 E-value=63 Score=22.87 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=16.9
Q ss_pred ccCCHHHHHHHHHHHhhhh
Q 036967 38 AYGIFEELKLFTEAVQRFK 56 (106)
Q Consensus 38 ~ygt~eEl~~ft~aveRWd 56 (106)
.|||.+|++.|+++..+=.
T Consensus 65 ~~Gt~~d~~~lv~~~h~~G 83 (166)
T smart00642 65 RFGTMEDFKELVDAAHARG 83 (166)
T ss_pred ccCCHHHHHHHHHHHHHCC
Confidence 6899999999999988755
No 38
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=25.56 E-value=51 Score=23.98 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=16.8
Q ss_pred cccCCHHHHHHHHHHHhhhh
Q 036967 37 DAYGIFEELKLFTEAVQRFK 56 (106)
Q Consensus 37 D~ygt~eEl~~ft~aveRWd 56 (106)
..|||.+|++.|+++..+=.
T Consensus 46 ~~~Gt~~d~~~Lv~~~h~~g 65 (316)
T PF00128_consen 46 PRFGTMEDFKELVDAAHKRG 65 (316)
T ss_dssp TTTBHHHHHHHHHHHHHHTT
T ss_pred cccchhhhhhhhhhcccccc
Confidence 46899999999999988644
No 39
>KOG2254 consensus Predicted endo-1,3-beta-glucanase [Carbohydrate transport and metabolism]
Probab=24.66 E-value=1.1e+02 Score=27.28 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhccc-ccccCCHHHHHHHHHHHhhhh
Q 036967 21 QMTKLIYMTSIIDDT-FDAYGIFEELKLFTEAVQRFK 56 (106)
Q Consensus 21 ~~tK~~~l~tilDD~-yD~ygt~eEl~~ft~aveRWd 56 (106)
++||+.-+..+..++ +|--.|-+=++.+..|++||-
T Consensus 421 viAkyA~i~l~a~eIl~de~~t~~~ltkLk~a~erfl 457 (747)
T KOG2254|consen 421 VIAKYARILLTASEILGDETSTKKILTKLKNAFERFL 457 (747)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 679998888888888 676667677899999999975
No 40
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=24.30 E-value=21 Score=26.03 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=16.5
Q ss_pred HhhcccccccCCHHHHHHHH
Q 036967 30 SIIDDTFDAYGIFEELKLFT 49 (106)
Q Consensus 30 tilDD~yD~ygt~eEl~~ft 49 (106)
.++||+.|+.+|+.++....
T Consensus 101 liVDDIidTG~Tl~~~~~~l 120 (189)
T PLN02238 101 LLVEDIVDTGNTLSALVAHL 120 (189)
T ss_pred EEEecccchHHHHHHHHHHH
Confidence 57999999999988886443
No 41
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=24.21 E-value=65 Score=20.59 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhhhhccccccccCCHHHHHHH
Q 036967 42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILY 74 (106)
Q Consensus 42 ~eEl~~ft~aveRWd~~~~~~~~~lp~~mki~f 74 (106)
..||+.|.+-+.+|. ...-+.+.+.++.+|
T Consensus 45 ~~eL~~y~~~v~~y~---~~l~~~iq~~~~~~~ 74 (76)
T PF06394_consen 45 QQELKTYQKKVAAYK---EQLQQQIQEQVESLF 74 (76)
T ss_dssp HHHHHHHHHHHHHHH---HHHTT----------
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHhhhc
Confidence 467888999999988 666666666665544
No 42
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=23.17 E-value=46 Score=23.96 Aligned_cols=21 Identities=5% Similarity=-0.111 Sum_probs=17.5
Q ss_pred HhhcccccccCCHHHHHHHHH
Q 036967 30 SIIDDTFDAYGIFEELKLFTE 50 (106)
Q Consensus 30 tilDD~yD~ygt~eEl~~ft~ 50 (106)
.++||+.++.||+.++....+
T Consensus 111 lIVDDvitTG~Tl~~~~~~l~ 131 (176)
T PRK13812 111 VVLEDIATTGQSAVDAVEALR 131 (176)
T ss_pred EEEEEeeCCCHHHHHHHHHHH
Confidence 479999999999998875554
No 43
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=22.92 E-value=39 Score=26.46 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=16.2
Q ss_pred HHhhcccccccCCHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLF 48 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~f 48 (106)
+.++||++|+.||+.++...
T Consensus 214 vIIVDDIidTG~Tl~~aa~~ 233 (301)
T PRK07199 214 PVLVDDIVSTGRTLIEAARQ 233 (301)
T ss_pred EEEEecccCcHHHHHHHHHH
Confidence 45799999999998887533
No 44
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=22.74 E-value=29 Score=25.19 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=18.2
Q ss_pred HHhhcccccccCCHHHHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLFTEA 51 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~ft~a 51 (106)
+.++||+.|+.+|+.++....+.
T Consensus 116 VliVDDvi~tG~Tl~~~~~~l~~ 138 (202)
T PRK00455 116 VLVVEDVITTGGSVLEAVEAIRA 138 (202)
T ss_pred EEEEecccCCcHHHHHHHHHHHH
Confidence 45799999999999998655443
No 45
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=22.20 E-value=39 Score=27.00 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=16.8
Q ss_pred HHhhcccccccCCHHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLFT 49 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~ft 49 (106)
+.++||+.|+.||+.++....
T Consensus 233 vlIVDDIidTG~Tl~~aa~~L 253 (326)
T PLN02297 233 VVIVDDLVQSGGTLIECQKVL 253 (326)
T ss_pred EEEEecccCcHHHHHHHHHHH
Confidence 357999999999988886443
No 46
>TIGR03209 P21_Cbot clostridium toxin-associated regulator BotR. Similarly, tetanus toxin production of Clostridium tetani is regulated by TetR which is a very close relative of BotR. Both BotR and TetR are members of the TIGR02937 subfamily of sigma-70 RNA polymerase sigma factors. Functional complementation experiments have been done for botR and tetR in highly transformable strain of Clostridium perfringens host cells to assess functional interchangeability of sigma factors and it has been confirmed that they are interchangeable in vivo.
Probab=22.14 E-value=1.1e+02 Score=20.25 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=22.4
Q ss_pred ccccccCCHHHHHHHHHHH---HHHHHHHHHHH
Q 036967 60 IGAMDKLPEYMKILYKALL---DTYNEIEQVLA 89 (106)
Q Consensus 60 ~~~~~~lp~~mki~f~~l~---~t~~ei~~~~~ 89 (106)
..+++.||+..|.+|..-+ -++.||++.+.
T Consensus 102 ~~~l~~Lp~~~r~v~~l~~~~~~s~~EIA~~l~ 134 (142)
T TIGR03209 102 NDLISILPNKQKKIIYMKFFEDMKEIDIAKKLH 134 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4579999999999888754 25777777643
No 47
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=21.63 E-value=1e+02 Score=24.89 Aligned_cols=56 Identities=13% Similarity=0.242 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhcccccccC--CHHHHHHHHHHHhhhhhccccccccCCHHHHHHHHHHHHHHHHHHHH
Q 036967 22 MTKLIYMTSIIDDTFDAYG--IFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQV 87 (106)
Q Consensus 22 ~tK~~~l~tilDD~yD~yg--t~eEl~~ft~aveRWd~~~~~~~~~lp~~mki~f~~l~~t~~ei~~~ 87 (106)
=|=.|.||-+|--.--..- |+||- +-.|||.|+ +.| .+=+++|-.+-.-|-|+|.+
T Consensus 230 EAlSCFLIpvLrsLar~kPtMtlEeG--l~ra~qEW~--~~S------nfdRmifyemaekFmEFEae 287 (328)
T PF12881_consen 230 EALSCFLIPVLRSLARLKPTMTLEEG--LWRAVQEWQ--HTS------NFDRMIFYEMAEKFMEFEAE 287 (328)
T ss_pred hhhhhhHHHHHHHHHhcCCCccHHHH--HHHHHHHhh--ccc------cccHHHHHHHHHHHccCCcH
Confidence 3445666666665544443 56665 678999998 233 44457777787778777654
No 48
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=21.27 E-value=1.4e+02 Score=22.13 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=15.3
Q ss_pred ccccccCCHHHHHHHHHHHh
Q 036967 34 DTFDAYGIFEELKLFTEAVQ 53 (106)
Q Consensus 34 D~yD~ygt~eEl~~ft~ave 53 (106)
..-.+|||+||+..|+-...
T Consensus 30 ~rVeayGtlDElNs~IG~A~ 49 (184)
T COG2096 30 PRVEAYGTLDELNSFIGLAR 49 (184)
T ss_pred ceeeeeccHHHHHHHHHHHH
Confidence 34578999999998876443
No 49
>PF00616 RasGAP: GTPase-activator protein for Ras-like GTPase; InterPro: IPR001936 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. This intrinsic GTPase activity of ras is stimulated by a family of proteins collectively known as 'GAP' or GTPase-activating proteins [, ]. As it is the GTP bound form of ras which is active, these proteins are said to be down-regulators of ras. The Ras GTPase-activating proteins are quite large (from 765 residues for sar1 to 3079 residues for IRA2) but share only a limited (about 250 residues) region of sequence similarity, referred to as the 'catalytic domain' or rasGAP domain. Note: There are distinctly different GAPs for the rap and rho/rac subfamilies of ras-like proteins (reviewed in reference []) that do not share sequence similarity with ras GAPs.; GO: 0005096 GTPase activator activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3BXJ_B 1WQ1_G 1WER_A 1NF1_A 3FAY_A.
Probab=21.23 E-value=2.3e+02 Score=19.77 Aligned_cols=24 Identities=13% Similarity=0.463 Sum_probs=19.3
Q ss_pred cccccCCHHHHHHHHHHHHHHHHH
Q 036967 61 GAMDKLPEYMKILYKALLDTYNEI 84 (106)
Q Consensus 61 ~~~~~lp~~mki~f~~l~~t~~ei 84 (106)
+.++.+|..+|.+.+.+++.+.+-
T Consensus 115 ~s~~~~P~~lr~i~~~i~~~~~~~ 138 (197)
T PF00616_consen 115 SSIDQIPPSLRYICKQIYEAVEKK 138 (197)
T ss_dssp GGGGGS-HHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHHHHHHHHHh
Confidence 678899999999999988877653
No 50
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=20.77 E-value=50 Score=24.98 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=18.3
Q ss_pred HHhhcccccccCCHHHHHHHHHH
Q 036967 29 TSIIDDTFDAYGIFEELKLFTEA 51 (106)
Q Consensus 29 ~tilDD~yD~ygt~eEl~~ft~a 51 (106)
+.++||+.++.||+..+..+.+.
T Consensus 179 VLIVDDvi~TG~Tl~~~~~ll~~ 201 (238)
T PRK08558 179 VLIVDDIIRSGETQRALLDLARQ 201 (238)
T ss_pred EEEEecccccCHHHHHHHHHHHH
Confidence 35799999999998888755543
No 51
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=20.45 E-value=2e+02 Score=17.43 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=24.5
Q ss_pred cccCCHHHHHHHHHHHhhhhhccccccccCCHHHHHHH
Q 036967 37 DAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILY 74 (106)
Q Consensus 37 D~ygt~eEl~~ft~aveRWd~~~~~~~~~lp~~mki~f 74 (106)
|..-+.+|.+.+.+.++++.-+.....+.+++.++...
T Consensus 13 DG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (104)
T cd07177 13 DGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPL 50 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 66667999999999999976100134455555554444
No 52
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs). An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=20.07 E-value=2.9e+02 Score=22.54 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhCC---ccHHHHHHHHhh
Q 036967 76 ALLDTYNEIEQVLAKEGR---SSYLRYDKEKVG 105 (106)
Q Consensus 76 ~l~~t~~ei~~~~~~~~~---~~~~~~~~~~~~ 105 (106)
.++.|++.|++.+-..++ ..++.|+++...
T Consensus 250 ~~l~t~~riq~~lf~~~~~~~~~~~~~l~~~i~ 282 (346)
T cd01709 250 AILATHERIQRRLFPDAGGGGGSVTEYLRQMIE 282 (346)
T ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Confidence 479999999999776432 356788887653
Done!