BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036968
         (352 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8AAB1|GLMS_BACTN Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
           OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM
           2079 / NCTC 10582 / E50 / VPI-5482) GN=glmS PE=3 SV=2
          Length = 614

 Score = 35.0 bits (79), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 289 VINKMSKLEAVNLLNITT----------LSQLRKDGHPSFYGTGGHSTPDCSHWCLPG 336
           VIN+  +L+ V+L N+            L QL K G+P F        PDC H C+ G
Sbjct: 217 VINRGKELKVVDLSNVEMTPEVKKVELKLGQLEKGGYPHFMLKEIFEQPDCIHDCMRG 274


>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
          Length = 781

 Score = 32.3 bits (72), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 72  TWQPTGCNLPRFNGEDFLQRFRGKSIMFVGDSLGLNQWQSLTCMLHKAV 120
            WQP GC L ++   +     R K I FVGDS     + S   M++  V
Sbjct: 63  VWQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQLFYSFIKMMNPEV 111


>sp|P29683|CHLN_CHLRE Light-independent protochlorophyllide reductase subunit N
           OS=Chlamydomonas reinhardtii GN=chlN PE=3 SV=1
          Length = 545

 Score = 32.3 bits (72), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 14/23 (60%), Positives = 19/23 (82%), Gaps = 1/23 (4%)

Query: 83  FNG-EDFLQRFRGKSIMFVGDSL 104
           FNG ED+L+  RGKS+ F+GD+L
Sbjct: 393 FNGLEDYLKLLRGKSVFFMGDNL 415


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,946,052
Number of Sequences: 539616
Number of extensions: 6462285
Number of successful extensions: 11967
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 11966
Number of HSP's gapped (non-prelim): 10
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)