BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036971
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 144/217 (66%), Gaps = 6/217 (2%)
Query: 1 MGSSTESKSKVTN-EEEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSAS 59
MGS+ E++ T+ +EE AM L SA VLP + ++ + LD+L+II KAGPGA++S
Sbjct: 1 MGSTGETQITPTHISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPI 60
Query: 60 EIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHG----VRLYSLAPVAKYYVSDQ 115
EIASQ+PT NP+ A MLDR+L LL + IL CS T RLY LA VAKY V ++
Sbjct: 61 EIASQLPTTNPD-APVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 119
Query: 116 NGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVFNNG 175
+GVS+ ++ DKV+M W+ LKD +L+G + +NKA GM ++Y GTD RFN+VFN G
Sbjct: 120 DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 179
Query: 176 MIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLS 212
M ++ + KI+E+Y GF+ + LVDVGGG G ++
Sbjct: 180 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVIN 216
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 142/220 (64%), Gaps = 9/220 (4%)
Query: 1 MGSSTESKSKVT---NEEEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKA-GPGAEL 56
MGS+ ++ ++ + +EE AM L SA VLP +A + LDVL+I+ K+ P +
Sbjct: 1 MGSTGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYI 60
Query: 57 SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSF----STHGVRLYSLAPVAKYYV 112
S +EIA+Q+PT NPE A MLDRVL LL S++++ + S RLY LAPV K+
Sbjct: 61 SPAEIAAQLPTTNPE-APVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLT 119
Query: 113 SDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVF 172
+++GVS+ P++ L+ DKV++ WF LKD ILEG + +NKA GM+ +DY GTD R N+VF
Sbjct: 120 KNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVF 179
Query: 173 NNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLS 212
N GM ++ + KI+E Y GF+ +T +VDVGGG G S
Sbjct: 180 NKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVAS 219
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 132/217 (60%), Gaps = 9/217 (4%)
Query: 1 MGSSTESKSKVTNEEEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASE 60
MGS+ + +E+ ++ A+ L S+ VLP + + L +L+I+ AG G L+ +E
Sbjct: 5 MGSTAADMAASADEDACMF--ALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTE 61
Query: 61 IASQIPTK-NPEGAAKMLDRVLGLLVSFNILCCSFSTHG----VRLYSLAPVAKYYVSDQ 115
+A+++P+ NPE A M+DR+L LL S+N++ C R Y APV K+ ++
Sbjct: 62 VAAKLPSAANPE-APDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNE 120
Query: 116 NGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVFNNG 175
+GVSM ++ DKV+M W+ LKD +L+G + +NKA GM ++Y GTD RFN VFN G
Sbjct: 121 DGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEG 180
Query: 176 MIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLS 212
M + + K++E Y GF+ + LVDVGGG+G T++
Sbjct: 181 MKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVA 217
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 112/204 (54%), Gaps = 7/204 (3%)
Query: 15 EEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGP-GAELSASEIASQIPTKNPEG- 72
E+ AMVL + +V PAV A ++L++ +II KA P GA +S SEIAS++P
Sbjct: 21 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSD 80
Query: 73 AAKMLDRVLGLLVSFNILCCSFST----HGVRLYSLAPVAKYYVSDQNGVSMRPYMNLSL 128
LDR+L LL S+++L + T R+Y L+ V KY V D++ + +
Sbjct: 81 LPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLC 140
Query: 129 DKVMMPGWFQLKDQILEGELS-YNKALGMDFYDYLGTDSRFNEVFNNGMIGQTSFVINKI 187
++ W K+ +++ ++ + G+ Y+++G D + N++FN M+ + + ++
Sbjct: 141 YPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRM 200
Query: 188 VESYKGFQNITRLVDVGGGLGITL 211
+E Y GF+ I+ LVDVGGG G L
Sbjct: 201 LEIYTGFEGISTLVDVGGGSGRNL 224
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 7/204 (3%)
Query: 15 EEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGP-GAELSASEIASQIPTKNPEGA 73
E+ A VL + +V PAV A ++L++ +II KA P GA S SEIAS++P
Sbjct: 21 EDSACLSAXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSEIASKLPASTQHSD 80
Query: 74 -AKMLDRVLGLLVSFNILCCSFST----HGVRLYSLAPVAKYYVSDQNGVSMRPYMNLSL 128
LDR L LL S+++L + T R+Y L+ V KY V D++ + +
Sbjct: 81 LPNRLDRXLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDESRGYLASFTTFLC 140
Query: 129 DKVMMPGWFQLKDQILEGELS-YNKALGMDFYDYLGTDSRFNEVFNNGMIGQTSFVINKI 187
++ W K+ +++ ++ + G+ Y++ G D + N++FN + + +
Sbjct: 141 YPALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRX 200
Query: 188 VESYKGFQNITRLVDVGGGLGITL 211
+E Y GF+ I+ LVDVGGG G L
Sbjct: 201 LEIYTGFEGISTLVDVGGGSGRNL 224
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 14/213 (6%)
Query: 1 MGSSTESK--SKVTNEEEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSA 58
M SS + S++ + +Y H ++ L + V +++ +II G LS
Sbjct: 1 MASSINGRKPSEIFKAQALLYKHIYAFIDSMSL----KWAVEMNIPNIIQNHGKPISLSN 56
Query: 59 SEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYVSDQNGV 118
Q+P+ G + L R L F I+ T Y+L ++ V + +
Sbjct: 57 LVSILQVPSSKI-GNVRRLMRYLAHNGFFEII-----TKEEESYALTVASELLVRGSD-L 109
Query: 119 SMRPYMNLSLDKVMMPGWFQLKDQILEGELS-YNKALGMDFYDYLGTDSRFNEVFNNGMI 177
+ P + LD + + +LK I E +L+ + LG F+D+L + +N FN+ M
Sbjct: 110 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMA 169
Query: 178 GQTSFVINKIVESYKGFQNITRLVDVGGGLGIT 210
+ + + + F + +VDVGGG G T
Sbjct: 170 SDSKLINLALRDCDFVFDGLESIVDVGGGTGTT 202
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 8/177 (4%)
Query: 35 FQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSF 94
+ V ++ +II G LS Q+P+ G + L R L F I+
Sbjct: 33 LKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSKI-GNVRRLXRYLAHNGFFEII---- 87
Query: 95 STHGVRLYSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELS-YNKA 153
T Y+L ++ V + + + P + LD + + +LK I E +L+ +
Sbjct: 88 -TKEEESYALTVASELLVRGSD-LCLAPXVECVLDPTLSGSYHELKKWIYEEDLTLFGVT 145
Query: 154 LGMDFYDYLGTDSRFNEVFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGIT 210
LG F+D+L + +N FN+ + + + + F + +VDVGGG G T
Sbjct: 146 LGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVGGGTGTT 202
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
Query: 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHG 98
+ +++ +II+ G LS QIP+ + +++ R L F I+ +
Sbjct: 37 IEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDNVQRLM-RYLAHNGFFEIITNQELENE 95
Query: 99 VRLYSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELS-YNKALGMD 157
Y+L VA + + + P + LD + + LK + E +L+ + LG D
Sbjct: 96 EEAYALT-VASELLVKGTELCLAPMVECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCD 154
Query: 158 FYDYLGTDSRFNEVFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGIT 210
+++L + +N ++N+ + + + + + F+ + +VDVGGG G T
Sbjct: 155 LWEFLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEGLESIVDVGGGNGTT 207
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 136 WFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVFNNGMIGQTSFVINKIVESYKGFQ 195
W QL + GE S++ A G F+ D + E+FN G S V + F
Sbjct: 143 WEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAX-GSVSLTEAGQVAAAYDFS 201
Query: 196 NITRLVDVGGGLG 208
VD+GGG G
Sbjct: 202 GAATAVDIGGGRG 214
>pdb|3QV9|A Chain A, Crystal Structure Of Trypanosoma Cruzi Pyruvate
Kinase(Tcpyk)in Complex With Ponceau S.
pdb|3QV9|B Chain B, Crystal Structure Of Trypanosoma Cruzi Pyruvate
Kinase(Tcpyk)in Complex With Ponceau S
Length = 499
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 109 KYYVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRF 168
K YV++ + ++ R NL +V +P + + L+ + + M F ++ T +
Sbjct: 163 KCYVNNAHFLTDRKGCNLPGCEVDLPAVSEKDREDLK--FGVEQGIDMVFASFIRTAEQV 220
Query: 169 NEVFNN-GMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220
EV G G+ +I+KI E+++G QNI +++ G+ + D +IP+
Sbjct: 221 QEVREALGEKGKDILIISKI-ENHQGVQNIDGIIEASDGIMVARGDLGVEIPA 272
>pdb|3E0V|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|B Chain B, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|C Chain C, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|D Chain D, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|E Chain E, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|F Chain F, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0W|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana
Length = 539
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 112 VSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEV 171
V++ + +S R +NL V +P KD++ + + + + M F ++ + + +V
Sbjct: 206 VTNSHTISDRRGVNLPGCDVDLPA-VSAKDRV-DLQFGVEQGVDMIFASFIRSAEQVGDV 263
Query: 172 FNN-GMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220
G G+ +I KI E+++G QNI +++ G+ + D +IP+
Sbjct: 264 RKALGPKGRDIMIICKI-ENHQGVQNIDSIIEESDGIMVARGDLGVEIPA 312
>pdb|3PP7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
In Complex With The Drug Suramin, An Inhibitor Of
Glycolysis.
pdb|3PP7|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
In Complex With The Drug Suramin, An Inhibitor Of
Glycolysis
Length = 498
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 112 VSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALGMD--FYDYLGTDSRFN 169
V++ + +S R +NL V +P KD++ +L + G+D F ++ + +
Sbjct: 165 VTNSHTISDRRGVNLPGCDVDLPA-VSAKDRV---DLQFGVEQGVDMIFASFIRSAEQVG 220
Query: 170 EVFNN-GMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220
+V G G+ +I KI E+++G QNI +++ G+ + D +IP+
Sbjct: 221 DVRKALGPKGRDIMIICKI-ENHQGVQNIDSIIEESDGIMVARGDLGVEIPA 271
>pdb|1PKL|A Chain A, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|B Chain B, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|C Chain C, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|D Chain D, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|E Chain E, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|F Chain F, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|H Chain H, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|G Chain G, The Structure Of Leishmania Pyruvate Kinase
pdb|3KTX|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3KTX|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3HQN|D Chain D, Apo Crystal Structure Of Leishmania
Mexicana(Lmpyk)pyruvate Kinase
pdb|3HQN|A Chain A, Apo Crystal Structure Of Leishmania
Mexicana(Lmpyk)pyruvate Kinase
pdb|3HQO|K Chain K, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQO|A Chain A, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQO|B Chain B, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQO|C Chain C, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQP|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|C Chain C, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|E Chain E, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|F Chain F, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|G Chain G, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|H Chain H, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|I Chain I, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|J Chain J, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|K Chain K, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|L Chain L, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|M Chain M, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|N Chain N, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|O Chain O, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|P Chain P, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQQ|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|C Chain C, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|E Chain E, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|F Chain F, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|G Chain G, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|H Chain H, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|I Chain I, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|J Chain J, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|K Chain K, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|L Chain L, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|M Chain M, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|N Chain N, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|O Chain O, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|P Chain P, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|Q Chain Q, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|R Chain R, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|S Chain S, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|T Chain T, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|U Chain U, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|V Chain V, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|W Chain W, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|X Chain X, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3IS4|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3IS4|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3QV6|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Acid Blue 80.
pdb|3QV6|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Acid Blue 80.
pdb|3QV7|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV7|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV7|C Chain C, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV8|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With
Benzothiazole-2,5-Disulfonic Acid.
pdb|3QV8|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With
Benzothiazole-2,5-Disulfonic Acid.
pdb|3SRK|A Chain A, A New Class Of Suicide Inhibitor Blocks Nucleotide Binding
To Pyruvate Kinase
pdb|3SRK|B Chain B, A New Class Of Suicide Inhibitor Blocks Nucleotide Binding
To Pyruvate Kinase
Length = 499
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 112 VSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEV 171
V++ + +S R +NL V +P KD++ + + + + M F ++ + + +V
Sbjct: 166 VTNSHTISDRRGVNLPGCDVDLPA-VSAKDRV-DLQFGVEQGVDMIFASFIRSAEQVGDV 223
Query: 172 FNN-GMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220
G G+ +I KI E+++G QNI +++ G+ + D +IP+
Sbjct: 224 RKALGPKGRDIMIICKI-ENHQGVQNIDSIIEESDGIMVARGDLGVEIPA 272
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 22 AMVLGSAIVLPAVFQAVVNLDV-LDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRV 80
A+ + + V P V +A+V L +++ ++ G L+A E+A +I P+G R
Sbjct: 114 ALHMAAGYVRPEVVEALVELGADIEVEDERG----LTALELAREILKTTPKGNPMQFGRR 169
Query: 81 LGLLVSFNIL 90
+GL N+L
Sbjct: 170 IGLEKVINVL 179
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 22 AMVLGSAIVLPAVFQAVVNLDV-LDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRV 80
A+ + + V P V +A+V L +++ ++ G L+A E+A +I P+G R
Sbjct: 113 ALHMAAGYVRPEVVEALVELGADIEVEDERG----LTALELAREILKTTPKGNPMQFGRR 168
Query: 81 LGLLVSFNIL 90
+GL N+L
Sbjct: 169 IGLEKVINVL 178
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 56/143 (39%), Gaps = 26/143 (18%)
Query: 74 AKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMM 133
A+ + R++ LLV+F I F Y+ P + + + D G S R M L +
Sbjct: 55 AERIHRLMRLLVAFEI----FQGDTRDGYANTPTS-HLLRDVEG-SFRD-MVLFYGEEFH 107
Query: 134 PGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVFNNGMIGQTSFVINKIVESYKG 193
W + +L G + A G DFY YL R + ++ + S
Sbjct: 108 AAWTPACEALLSGTPGFELAFGEDFYSYL---KRCPDAGRRFLLAMKA--------SNLA 156
Query: 194 FQNITRL--------VDVGGGLG 208
F I RL VDVGGG G
Sbjct: 157 FHEIPRLLDFRGRSFVDVGGGSG 179
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 32/211 (15%)
Query: 13 NEEEEVYSHAMVLGSAI---VLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKN 69
+EE E+Y + L + V ++ + L + D I+ G ++ SE+AS + K
Sbjct: 2 SEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIH--NHGKPMTLSELASSL--KL 57
Query: 70 PEGAAKMLDRVLGLLVSFNILCCSFSTHGVRL------YSLAPVAKYYVSDQNGV----- 118
+L R L LL + YSL P +K +S +
Sbjct: 58 HPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIV 117
Query: 119 --SMRPYMNLSLDKVMM-PGWF-QLKDQILEGELSYNKALGMDFYDYLGTDSRFN--EVF 172
++ P SLD WF + K+Q L + A G F+D+L DS + +F
Sbjct: 118 KGALHPS---SLDMWSSSKKWFNEDKEQTL-----FECATGESFWDFLNKDSESSTLSMF 169
Query: 173 NNGMIGQTSFVINKIVESYKGFQNITRLVDV 203
+ M + + E+ + F+ + LVDV
Sbjct: 170 QDAMASDSRMFKLVLQENKRVFEGLESLVDV 200
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 32/211 (15%)
Query: 13 NEEEEVYSHAMVLGSAI---VLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKN 69
+EE E+Y + L + V ++ + L + D I+ G ++ SE+AS + K
Sbjct: 1 SEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIH--NHGKPMTLSELASSL--KL 56
Query: 70 PEGAAKMLDRVLGLLVSFNILCCSFSTHGVRL------YSLAPVAKYYVSDQNGV----- 118
+L R L LL + YSL P +K +S +
Sbjct: 57 HPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIV 116
Query: 119 --SMRPYMNLSLDKVMM-PGWF-QLKDQILEGELSYNKALGMDFYDYLGTDSRFN--EVF 172
++ P SLD WF + K+Q L + A G F+D+L DS + +F
Sbjct: 117 KGALHPS---SLDMWSSSKKWFNEDKEQTL-----FECATGESFWDFLNKDSESSTLSMF 168
Query: 173 NNGMIGQTSFVINKIVESYKGFQNITRLVDV 203
+ M + + E+ + F+ + LVDV
Sbjct: 169 QDAMASDSRMFKLVLQENKRVFEGLESLVDV 199
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 159 YDYLGTDSRFNEVFNNGMIGQTSF 182
Y Y D +FN+ FN G+ Q SF
Sbjct: 100 YPYRTADGKFNDPFNEGVGSQNSF 123
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 33/212 (15%)
Query: 9 SKVTNEEEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTK 68
S++ + + +Y H S++ L ++ + L + D I+ G ++ SE+AS + K
Sbjct: 1 SELYHAQIHLYKHVYNFVSSMAL----KSAMELGIADAIH--NHGKPMTLSELASSL--K 52
Query: 69 NPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRL------YSLAPVAKYYVSDQNGV---- 118
+L R L LL + YSL P +K +S +
Sbjct: 53 LHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSI 112
Query: 119 ---SMRPYMNLSLDKVMM-PGWF-QLKDQILEGELSYNKALGMDFYDYLGTDSRFN--EV 171
++ P SLD WF + K+Q L + A G F+D+L DS + +
Sbjct: 113 VKGALHPS---SLDMWSSSKKWFNEDKEQTL-----FECATGESFWDFLNKDSESSTLSM 164
Query: 172 FNNGMIGQTSFVINKIVESYKGFQNITRLVDV 203
F + M + + E+ + F+ + LVDV
Sbjct: 165 FQDAMASDSRMFKLVLQENKRVFEGLESLVDV 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,384,063
Number of Sequences: 62578
Number of extensions: 257747
Number of successful extensions: 578
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 34
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)