Query 036971
Match_columns 221
No_of_seqs 122 out of 1073
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 11:57:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9c_A Caffeic acid O-methyltr 100.0 1.5E-35 5.1E-40 258.4 21.7 217 1-221 5-226 (364)
2 3reo_A (ISO)eugenol O-methyltr 100.0 6.1E-35 2.1E-39 254.8 20.5 219 1-221 1-228 (368)
3 1fp2_A Isoflavone O-methyltran 100.0 1.9E-34 6.4E-39 250.0 17.2 210 1-221 1-213 (352)
4 4a6d_A Hydroxyindole O-methylt 100.0 5.6E-34 1.9E-38 247.5 17.1 194 17-221 7-204 (353)
5 3lst_A CALO1 methyltransferase 100.0 1.5E-33 5.1E-38 244.1 16.8 192 14-221 18-209 (348)
6 1zg3_A Isoflavanone 4'-O-methy 100.0 2.3E-32 7.9E-37 237.3 16.2 202 13-221 5-218 (358)
7 3gwz_A MMCR; methyltransferase 100.0 4.7E-32 1.6E-36 236.5 16.3 191 16-221 36-227 (369)
8 2ip2_A Probable phenazine-spec 100.0 2.8E-31 9.5E-36 228.0 18.5 186 17-221 7-192 (334)
9 3i53_A O-methyltransferase; CO 100.0 4.7E-32 1.6E-36 232.9 13.2 188 19-221 6-194 (332)
10 1fp1_D Isoliquiritigenin 2'-O- 100.0 2.1E-30 7.2E-35 226.1 18.3 208 13-221 17-234 (372)
11 1qzz_A RDMB, aclacinomycin-10- 100.0 4.1E-30 1.4E-34 223.8 14.8 192 15-221 13-207 (374)
12 3dp7_A SAM-dependent methyltra 100.0 8.6E-30 2.9E-34 221.7 12.8 191 11-221 8-204 (363)
13 1tw3_A COMT, carminomycin 4-O- 100.0 7.2E-29 2.5E-33 215.0 15.7 189 18-221 19-208 (360)
14 1x19_A CRTF-related protein; m 100.0 9.7E-28 3.3E-32 208.2 16.0 185 11-221 23-215 (359)
15 2r3s_A Uncharacterized protein 100.0 9E-28 3.1E-32 205.8 15.4 180 20-221 8-190 (335)
16 3mcz_A O-methyltransferase; ad 99.9 2.8E-26 9.4E-31 198.2 14.7 178 18-221 24-204 (352)
17 2qm3_A Predicted methyltransfe 98.2 6.1E-07 2.1E-11 77.8 3.8 54 42-111 47-100 (373)
18 2heo_A Z-DNA binding protein 1 97.4 9.9E-05 3.4E-09 48.0 2.6 55 40-105 12-66 (67)
19 3b73_A PHIH1 repressor-like pr 97.2 0.00022 7.5E-09 51.1 3.6 64 39-114 14-79 (111)
20 1y0u_A Arsenical resistance op 97.2 0.00034 1.1E-08 48.4 3.9 62 33-109 26-87 (96)
21 1ve3_A Hypothetical protein PH 97.1 0.00038 1.3E-08 54.9 4.2 59 159-220 4-62 (227)
22 1qbj_A Protein (double-strande 97.1 0.0006 2.1E-08 46.0 4.3 67 39-112 11-77 (81)
23 3mq0_A Transcriptional repress 97.1 0.00035 1.2E-08 57.9 3.7 58 41-109 33-90 (275)
24 1qgp_A Protein (double strande 96.9 0.00053 1.8E-08 45.8 2.9 61 39-106 15-75 (77)
25 1mkm_A ICLR transcriptional re 96.6 0.0017 6E-08 52.8 4.5 57 41-108 11-67 (249)
26 3pqk_A Biofilm growth-associat 96.6 0.0031 1.1E-07 43.8 5.1 51 34-93 19-69 (102)
27 2xrn_A HTH-type transcriptiona 96.5 0.0015 5.1E-08 52.9 3.5 61 41-111 9-69 (241)
28 2oqg_A Possible transcriptiona 96.5 0.0021 7.1E-08 45.4 3.6 61 38-108 21-81 (114)
29 2y75_A HTH-type transcriptiona 96.4 0.0032 1.1E-07 45.8 4.6 47 54-107 25-71 (129)
30 3r4k_A Transcriptional regulat 96.4 0.00063 2.1E-08 55.9 0.7 60 41-110 9-68 (260)
31 1u2w_A CADC repressor, cadmium 96.3 0.0027 9.1E-08 45.9 3.5 54 32-93 36-89 (122)
32 3jth_A Transcription activator 96.3 0.0021 7.1E-08 44.4 2.6 51 34-93 19-69 (98)
33 3dli_A Methyltransferase; PSI- 96.2 0.006 2.1E-07 48.6 5.3 33 187-219 32-64 (240)
34 1xmk_A Double-stranded RNA-spe 96.2 0.0031 1.1E-07 42.2 2.9 63 39-110 12-74 (79)
35 3cuo_A Uncharacterized HTH-typ 96.1 0.0029 9.8E-08 43.4 2.7 49 37-93 23-71 (99)
36 3dtn_A Putative methyltransfer 96.1 0.0095 3.2E-07 47.1 6.1 35 186-220 34-68 (234)
37 3f6o_A Probable transcriptiona 96.1 0.004 1.4E-07 44.6 3.4 64 33-106 13-76 (118)
38 1r1u_A CZRA, repressor protein 96.1 0.0033 1.1E-07 44.1 2.8 47 38-93 26-72 (106)
39 2o0y_A Transcriptional regulat 96.1 0.002 6.7E-08 52.8 1.8 58 41-109 26-83 (260)
40 2g7u_A Transcriptional regulat 96.1 0.0022 7.5E-08 52.4 2.1 60 41-112 17-76 (257)
41 3t8r_A Staphylococcus aureus C 96.1 0.0055 1.9E-07 45.7 4.1 46 54-106 27-72 (143)
42 4a5n_A Uncharacterized HTH-typ 96.0 0.012 4.2E-07 43.2 5.9 78 18-113 15-95 (131)
43 3vc1_A Geranyl diphosphate 2-C 96.0 0.016 5.5E-07 48.2 7.4 47 171-218 93-139 (312)
44 2jt1_A PEFI protein; solution 96.0 0.0045 1.5E-07 41.2 3.1 44 43-93 9-57 (77)
45 2jsc_A Transcriptional regulat 96.0 0.0036 1.2E-07 45.0 2.8 65 33-107 16-80 (118)
46 3e05_A Precorrin-6Y C5,15-meth 96.0 0.01 3.5E-07 46.0 5.6 34 186-220 31-64 (204)
47 3lwf_A LIN1550 protein, putati 95.9 0.0072 2.5E-07 45.9 4.4 63 31-106 26-88 (159)
48 2hzt_A Putative HTH-type trans 95.9 0.017 5.8E-07 40.5 5.8 54 54-112 26-82 (107)
49 1oyi_A Double-stranded RNA-bin 95.8 0.0053 1.8E-07 41.4 2.8 60 38-108 17-76 (82)
50 1jg1_A PIMT;, protein-L-isoasp 95.8 0.0072 2.4E-07 48.2 4.2 36 183-219 79-114 (235)
51 1xn7_A Hypothetical protein YH 95.8 0.0086 2.9E-07 39.9 3.9 43 43-93 7-49 (78)
52 1on2_A Transcriptional regulat 95.8 0.0055 1.9E-07 45.0 3.2 55 46-112 16-70 (142)
53 3dlc_A Putative S-adenosyl-L-m 95.8 0.0077 2.6E-07 46.7 4.2 32 184-217 33-64 (219)
54 2htj_A P fimbrial regulatory p 95.8 0.0063 2.2E-07 40.5 3.1 45 41-93 3-47 (81)
55 2ia2_A Putative transcriptiona 95.8 0.0024 8.3E-08 52.4 1.2 58 41-110 24-81 (265)
56 2kko_A Possible transcriptiona 95.8 0.0022 7.4E-08 45.4 0.7 46 39-93 26-71 (108)
57 4gek_A TRNA (CMO5U34)-methyltr 95.8 0.02 7E-07 46.7 6.7 32 186-219 62-93 (261)
58 3fzg_A 16S rRNA methylase; met 95.8 0.017 5.9E-07 45.4 5.8 27 195-221 48-74 (200)
59 3hem_A Cyclopropane-fatty-acyl 95.8 0.011 3.9E-07 48.8 5.2 34 185-219 62-95 (302)
60 1r7j_A Conserved hypothetical 95.8 0.0057 1.9E-07 42.4 2.8 48 56-113 21-68 (95)
61 2k02_A Ferrous iron transport 95.7 0.0083 2.8E-07 40.9 3.5 43 43-93 7-49 (87)
62 1vl5_A Unknown conserved prote 95.7 0.0038 1.3E-07 50.4 2.1 34 185-219 27-60 (260)
63 3bus_A REBM, methyltransferase 95.7 0.016 5.5E-07 46.9 5.9 34 184-218 50-83 (273)
64 1ub9_A Hypothetical protein PH 95.7 0.0062 2.1E-07 41.6 2.9 69 33-109 11-81 (100)
65 1xtp_A LMAJ004091AAA; SGPP, st 95.7 0.0091 3.1E-07 47.7 4.3 33 185-218 83-115 (254)
66 2fca_A TRNA (guanine-N(7)-)-me 95.7 0.0074 2.5E-07 47.6 3.6 24 197-220 39-62 (213)
67 2o57_A Putative sarcosine dime 95.7 0.0085 2.9E-07 49.3 4.1 34 184-218 67-104 (297)
68 3f6v_A Possible transcriptiona 95.7 0.0058 2E-07 46.0 2.8 67 31-107 51-117 (151)
69 3ech_A MEXR, multidrug resista 95.7 0.026 8.8E-07 41.1 6.3 67 38-112 37-105 (142)
70 1yb2_A Hypothetical protein TA 95.6 0.0067 2.3E-07 49.7 3.3 34 186-220 101-135 (275)
71 3g5l_A Putative S-adenosylmeth 95.5 0.015 5.1E-07 46.6 4.9 33 186-219 35-67 (253)
72 1nkv_A Hypothetical protein YJ 95.5 0.017 6E-07 46.1 5.3 33 185-218 26-58 (256)
73 3ckk_A TRNA (guanine-N(7)-)-me 95.5 0.0065 2.2E-07 48.9 2.6 25 196-220 46-70 (235)
74 3f4k_A Putative methyltransfer 95.5 0.019 6.4E-07 45.9 5.3 34 186-219 36-69 (257)
75 3mb5_A SAM-dependent methyltra 95.5 0.0084 2.9E-07 48.2 3.2 36 184-220 82-118 (255)
76 3bkx_A SAM-dependent methyltra 95.4 0.019 6.5E-07 46.5 5.4 32 186-218 34-65 (275)
77 1yzh_A TRNA (guanine-N(7)-)-me 95.4 0.011 3.7E-07 46.4 3.7 24 197-220 42-65 (214)
78 2wte_A CSA3; antiviral protein 95.4 0.0076 2.6E-07 49.0 2.8 62 40-112 154-215 (244)
79 3bkw_A MLL3908 protein, S-aden 95.4 0.013 4.3E-07 46.4 4.1 33 186-219 34-66 (243)
80 2fu4_A Ferric uptake regulatio 95.4 0.0084 2.9E-07 39.9 2.6 49 40-94 19-72 (83)
81 1kpg_A CFA synthase;, cyclopro 95.4 0.017 5.7E-07 47.2 4.8 34 185-219 54-87 (287)
82 3ou2_A SAM-dependent methyltra 95.4 0.016 5.4E-07 45.0 4.5 31 187-217 37-67 (218)
83 3df8_A Possible HXLR family tr 95.3 0.0097 3.3E-07 42.2 2.7 73 20-112 18-93 (111)
84 3dh0_A SAM dependent methyltra 95.3 0.012 4.2E-07 45.8 3.5 32 186-218 28-59 (219)
85 1ylf_A RRF2 family protein; st 95.2 0.012 4.3E-07 43.9 3.3 63 30-107 12-74 (149)
86 1r1t_A Transcriptional repress 95.2 0.011 3.9E-07 42.6 2.9 48 37-93 45-92 (122)
87 3iv6_A Putative Zn-dependent a 95.2 0.014 4.6E-07 48.0 3.7 33 185-218 35-67 (261)
88 3k69_A Putative transcription 95.1 0.027 9.2E-07 42.8 5.0 47 54-107 27-73 (162)
89 3mgg_A Methyltransferase; NYSG 95.1 0.018 6.3E-07 46.6 4.3 27 194-220 35-61 (276)
90 1jsx_A Glucose-inhibited divis 95.1 0.0055 1.9E-07 47.5 1.1 24 197-220 66-89 (207)
91 3pfg_A N-methyltransferase; N, 95.1 0.026 8.9E-07 45.4 5.2 24 196-219 50-73 (263)
92 3g07_A 7SK snRNA methylphospha 95.1 0.013 4.6E-07 48.4 3.5 25 196-220 46-70 (292)
93 1tbx_A ORF F-93, hypothetical 95.1 0.011 3.9E-07 40.5 2.6 64 40-112 10-77 (99)
94 3ujc_A Phosphoethanolamine N-m 95.1 0.015 5.2E-07 46.5 3.7 34 184-218 44-77 (266)
95 4e2x_A TCAB9; kijanose, tetron 95.1 0.014 4.8E-07 50.6 3.7 36 182-218 94-129 (416)
96 1fbn_A MJ fibrillarin homologu 95.1 0.016 5.4E-07 46.0 3.6 30 189-219 68-97 (230)
97 2qe6_A Uncharacterized protein 95.0 0.03 1E-06 46.0 5.4 25 196-220 77-104 (274)
98 3kp7_A Transcriptional regulat 95.0 0.087 3E-06 38.6 7.5 63 41-112 41-107 (151)
99 3bdd_A Regulatory protein MARR 95.0 0.025 8.6E-07 40.9 4.4 66 39-112 32-99 (142)
100 4dcm_A Ribosomal RNA large sub 94.9 0.028 9.6E-07 48.4 5.1 34 186-220 213-246 (375)
101 2fsw_A PG_0823 protein; alpha- 94.9 0.021 7.3E-07 40.0 3.6 77 18-112 14-93 (107)
102 3orh_A Guanidinoacetate N-meth 94.9 0.014 4.9E-07 46.7 3.1 24 196-219 60-83 (236)
103 3fm5_A Transcriptional regulat 94.9 0.014 4.7E-07 43.0 2.7 66 39-112 40-108 (150)
104 2vdv_E TRNA (guanine-N(7)-)-me 94.9 0.015 5.1E-07 46.7 3.1 26 195-220 48-73 (246)
105 3bja_A Transcriptional regulat 94.9 0.021 7.2E-07 41.1 3.7 66 39-112 34-101 (139)
106 1z7u_A Hypothetical protein EF 94.9 0.012 4.2E-07 41.6 2.4 77 18-112 11-90 (112)
107 3g5t_A Trans-aconitate 3-methy 94.9 0.045 1.5E-06 45.0 6.2 24 195-218 35-58 (299)
108 3ofk_A Nodulation protein S; N 94.9 0.0064 2.2E-07 47.5 0.7 25 194-218 49-73 (216)
109 3uzu_A Ribosomal RNA small sub 94.8 0.018 6.1E-07 47.7 3.5 35 185-220 32-66 (279)
110 3boq_A Transcriptional regulat 94.8 0.064 2.2E-06 39.6 6.3 65 40-112 49-116 (160)
111 2yqz_A Hypothetical protein TT 94.8 0.038 1.3E-06 44.1 5.3 24 194-217 37-60 (263)
112 2p7i_A Hypothetical protein; p 94.8 0.013 4.6E-07 46.2 2.5 25 196-220 42-66 (250)
113 3cgg_A SAM-dependent methyltra 94.8 0.02 6.8E-07 43.3 3.4 29 187-217 39-67 (195)
114 3ggd_A SAM-dependent methyltra 94.8 0.033 1.1E-06 44.2 4.8 27 194-220 54-80 (245)
115 3thr_A Glycine N-methyltransfe 94.7 0.015 5.1E-07 47.6 2.7 24 196-219 57-80 (293)
116 2pwy_A TRNA (adenine-N(1)-)-me 94.7 0.019 6.5E-07 45.9 3.3 34 185-219 86-120 (258)
117 2pg4_A Uncharacterized protein 94.7 0.011 3.6E-07 40.5 1.5 63 43-112 20-83 (95)
118 1nt2_A Fibrillarin-like PRE-rR 94.7 0.026 8.9E-07 44.4 3.9 26 194-219 55-80 (210)
119 2f2e_A PA1607; transcription f 94.6 0.021 7.1E-07 42.5 3.1 74 21-112 16-90 (146)
120 1dus_A MJ0882; hypothetical pr 94.6 0.036 1.2E-06 41.8 4.6 31 186-217 43-73 (194)
121 4hg2_A Methyltransferase type 94.6 0.015 5.3E-07 47.4 2.5 25 196-220 39-63 (257)
122 3r0a_A Putative transcriptiona 94.6 0.017 5.9E-07 41.6 2.5 47 40-93 28-75 (123)
123 2h09_A Transcriptional regulat 94.6 0.016 5.6E-07 43.1 2.5 58 43-112 45-102 (155)
124 1u2z_A Histone-lysine N-methyl 94.6 0.03 1E-06 49.3 4.5 34 185-219 232-265 (433)
125 2aot_A HMT, histamine N-methyl 94.6 0.033 1.1E-06 45.8 4.5 24 197-220 53-80 (292)
126 2yxd_A Probable cobalt-precorr 94.6 0.039 1.3E-06 41.3 4.6 30 187-217 27-56 (183)
127 3uwp_A Histone-lysine N-methyl 94.6 0.036 1.2E-06 48.6 4.9 35 184-219 162-196 (438)
128 3ntv_A MW1564 protein; rossman 94.6 0.0068 2.3E-07 48.3 0.3 25 196-220 71-95 (232)
129 3g89_A Ribosomal RNA small sub 94.6 0.026 8.9E-07 45.7 3.8 27 194-220 78-104 (249)
130 2x4h_A Hypothetical protein SS 94.5 0.021 7.2E-07 41.6 2.9 48 54-111 30-77 (139)
131 2avd_A Catechol-O-methyltransf 94.5 0.023 7.9E-07 44.7 3.3 24 196-219 69-92 (229)
132 3opn_A Putative hemolysin; str 94.5 0.052 1.8E-06 43.5 5.4 32 186-218 27-59 (232)
133 2pjd_A Ribosomal RNA small sub 94.5 0.027 9.3E-07 47.7 3.9 35 185-220 186-220 (343)
134 3kkz_A Uncharacterized protein 94.5 0.045 1.5E-06 44.2 5.0 31 187-217 37-67 (267)
135 1bja_A Transcription regulator 94.5 0.033 1.1E-06 38.5 3.6 61 40-113 18-79 (95)
136 2fk8_A Methoxy mycolic acid sy 94.5 0.048 1.7E-06 45.2 5.3 34 184-218 79-112 (318)
137 1yyv_A Putative transcriptiona 94.5 0.017 5.8E-07 42.3 2.2 76 19-112 25-103 (131)
138 2nnn_A Probable transcriptiona 94.5 0.021 7.1E-07 41.2 2.7 65 39-112 39-106 (140)
139 2bv6_A MGRA, HTH-type transcri 94.4 0.026 8.8E-07 41.0 3.2 66 39-112 38-105 (142)
140 2hr3_A Probable transcriptiona 94.4 0.036 1.2E-06 40.3 4.0 67 38-112 35-104 (147)
141 3fut_A Dimethyladenosine trans 94.4 0.04 1.4E-06 45.4 4.5 32 185-218 37-68 (271)
142 1wzn_A SAM-dependent methyltra 94.4 0.11 3.7E-06 41.3 7.1 31 186-217 32-62 (252)
143 3cdh_A Transcriptional regulat 94.4 0.13 4.4E-06 37.8 7.0 65 40-112 45-111 (155)
144 2b3t_A Protein methyltransfera 94.4 0.059 2E-06 43.9 5.5 34 185-220 100-133 (276)
145 3njr_A Precorrin-6Y methylase; 94.3 0.049 1.7E-06 42.4 4.8 30 187-217 47-76 (204)
146 1ws6_A Methyltransferase; stru 94.3 0.028 9.5E-07 41.8 3.2 25 196-220 41-65 (171)
147 1xd7_A YWNA; structural genomi 94.3 0.034 1.2E-06 41.3 3.5 61 30-107 7-67 (145)
148 1sfx_A Conserved hypothetical 94.2 0.031 1.1E-06 38.4 3.1 47 39-93 21-67 (109)
149 1s3j_A YUSO protein; structura 94.2 0.072 2.5E-06 39.1 5.3 64 40-112 39-105 (155)
150 2qww_A Transcriptional regulat 94.2 0.03 1E-06 41.2 3.1 65 39-112 42-111 (154)
151 2lkp_A Transcriptional regulat 94.2 0.027 9.3E-07 40.0 2.7 47 38-93 32-78 (119)
152 1i9g_A Hypothetical protein RV 94.1 0.028 9.6E-07 45.7 3.1 33 184-217 88-120 (280)
153 3lbf_A Protein-L-isoaspartate 94.1 0.068 2.3E-06 41.3 5.2 31 186-217 68-98 (210)
154 2yxe_A Protein-L-isoaspartate 94.1 0.054 1.9E-06 42.0 4.6 32 186-218 68-99 (215)
155 1vbf_A 231AA long hypothetical 94.1 0.064 2.2E-06 42.1 5.0 33 185-218 60-92 (231)
156 3bj6_A Transcriptional regulat 94.1 0.023 7.7E-07 41.7 2.2 65 40-112 42-108 (152)
157 2lnb_A Z-DNA-binding protein 1 94.0 0.037 1.3E-06 36.5 2.8 56 39-105 20-75 (80)
158 3bpv_A Transcriptional regulat 94.0 0.025 8.4E-07 40.8 2.3 64 40-112 31-97 (138)
159 3nrv_A Putative transcriptiona 94.0 0.026 8.9E-07 41.3 2.5 66 39-112 41-108 (148)
160 2y1w_A Histone-arginine methyl 94.0 0.055 1.9E-06 45.9 4.8 31 186-217 41-71 (348)
161 2zfu_A Nucleomethylin, cerebra 94.0 0.031 1.1E-06 43.4 3.1 20 195-214 66-85 (215)
162 2fyt_A Protein arginine N-meth 94.0 0.071 2.4E-06 45.1 5.4 30 187-217 56-85 (340)
163 2ipx_A RRNA 2'-O-methyltransfe 94.0 0.021 7.3E-07 45.2 2.0 28 190-218 72-99 (233)
164 2a61_A Transcriptional regulat 94.0 0.022 7.6E-07 41.4 2.0 65 39-112 34-101 (145)
165 3k0l_A Repressor protein; heli 94.0 0.05 1.7E-06 40.6 4.0 65 40-112 48-114 (162)
166 3bxo_A N,N-dimethyltransferase 93.9 0.097 3.3E-06 41.0 5.8 24 196-219 40-63 (239)
167 2qvo_A Uncharacterized protein 93.9 0.022 7.6E-07 38.9 1.8 49 55-112 30-81 (95)
168 3hnr_A Probable methyltransfer 93.9 0.032 1.1E-06 43.5 2.9 22 196-217 45-66 (220)
169 1xdz_A Methyltransferase GIDB; 93.9 0.027 9.1E-07 45.0 2.4 27 194-220 68-94 (240)
170 2zkz_A Transcriptional repress 93.9 0.026 8.8E-07 39.0 2.1 48 37-93 26-73 (99)
171 3g3z_A NMB1585, transcriptiona 93.9 0.032 1.1E-06 40.7 2.7 66 39-112 32-99 (145)
172 2fa5_A Transcriptional regulat 93.9 0.029 9.9E-07 41.7 2.5 65 40-112 51-117 (162)
173 2ozv_A Hypothetical protein AT 93.8 0.051 1.8E-06 44.1 4.0 27 194-220 34-60 (260)
174 2h1r_A Dimethyladenosine trans 93.8 0.028 9.7E-07 46.8 2.5 33 185-218 32-64 (299)
175 3gru_A Dimethyladenosine trans 93.8 0.077 2.7E-06 44.2 5.1 33 184-217 39-71 (295)
176 3ccf_A Cyclopropane-fatty-acyl 93.7 0.056 1.9E-06 43.9 4.2 29 187-216 49-77 (279)
177 2pex_A Transcriptional regulat 93.7 0.034 1.2E-06 40.9 2.6 68 39-114 48-117 (153)
178 3g2m_A PCZA361.24; SAM-depende 93.7 0.05 1.7E-06 44.8 3.9 34 183-218 71-104 (299)
179 3e8s_A Putative SAM dependent 93.7 0.04 1.4E-06 42.7 3.2 30 187-217 44-73 (227)
180 2nyx_A Probable transcriptiona 93.7 0.13 4.6E-06 38.5 6.0 66 39-112 46-113 (168)
181 1nv8_A HEMK protein; class I a 93.7 0.04 1.4E-06 45.5 3.1 23 197-220 124-146 (284)
182 2nxc_A L11 mtase, ribosomal pr 93.6 0.072 2.5E-06 43.0 4.6 46 171-219 98-143 (254)
183 1dl5_A Protein-L-isoaspartate 93.6 0.068 2.3E-06 44.6 4.6 34 186-220 66-99 (317)
184 1o54_A SAM-dependent O-methylt 93.6 0.086 2.9E-06 42.9 5.1 35 184-219 101-136 (277)
185 1jgs_A Multiple antibiotic res 93.6 0.033 1.1E-06 40.1 2.3 64 40-112 36-102 (138)
186 2rdp_A Putative transcriptiona 93.6 0.038 1.3E-06 40.4 2.7 65 40-112 44-110 (150)
187 3oop_A LIN2960 protein; protei 93.6 0.029 9.9E-07 40.8 2.0 66 39-112 38-105 (143)
188 3e23_A Uncharacterized protein 93.5 0.065 2.2E-06 41.4 4.1 23 195-217 42-64 (211)
189 2fbi_A Probable transcriptiona 93.5 0.031 1E-06 40.4 2.0 65 39-112 37-104 (142)
190 4htf_A S-adenosylmethionine-de 93.5 0.054 1.8E-06 44.1 3.7 30 186-217 60-89 (285)
191 3hsr_A HTH-type transcriptiona 93.5 0.18 6.3E-06 36.4 6.3 64 41-112 39-104 (140)
192 2gxg_A 146AA long hypothetical 93.5 0.048 1.6E-06 39.6 3.0 65 39-112 38-104 (146)
193 1z91_A Organic hydroperoxide r 93.5 0.071 2.4E-06 38.7 4.0 68 39-114 41-110 (147)
194 2fbh_A Transcriptional regulat 93.5 0.044 1.5E-06 39.7 2.8 45 41-93 40-85 (146)
195 1q1h_A TFE, transcription fact 93.4 0.049 1.7E-06 38.1 2.9 47 40-93 20-66 (110)
196 2eth_A Transcriptional regulat 93.4 0.05 1.7E-06 40.2 3.0 67 38-112 44-112 (154)
197 3duw_A OMT, O-methyltransferas 93.4 0.051 1.7E-06 42.5 3.2 23 197-219 59-81 (223)
198 3bro_A Transcriptional regulat 93.4 0.043 1.5E-06 39.6 2.6 66 40-112 36-104 (141)
199 2fhp_A Methylase, putative; al 93.3 0.091 3.1E-06 39.5 4.6 23 195-217 43-65 (187)
200 3tr6_A O-methyltransferase; ce 93.3 0.053 1.8E-06 42.4 3.2 23 197-219 65-87 (225)
201 3lpm_A Putative methyltransfer 93.2 0.074 2.5E-06 42.9 4.1 26 194-219 46-72 (259)
202 2yvl_A TRMI protein, hypotheti 93.2 0.13 4.5E-06 40.6 5.5 31 186-217 82-112 (248)
203 3cjn_A Transcriptional regulat 93.2 0.033 1.1E-06 41.4 1.8 66 39-112 53-120 (162)
204 3tma_A Methyltransferase; thum 93.2 0.082 2.8E-06 44.8 4.4 35 183-218 191-225 (354)
205 3u2r_A Regulatory protein MARR 93.1 0.23 7.9E-06 37.0 6.5 67 39-112 47-116 (168)
206 3c3p_A Methyltransferase; NP_9 93.1 0.056 1.9E-06 42.0 3.0 23 197-219 57-79 (210)
207 2k4b_A Transcriptional regulat 93.0 0.051 1.7E-06 37.8 2.4 50 40-93 37-86 (99)
208 1g6q_1 HnRNP arginine N-methyl 93.0 0.12 4.2E-06 43.3 5.3 21 197-217 39-59 (328)
209 2gpy_A O-methyltransferase; st 93.0 0.069 2.4E-06 42.1 3.6 24 197-220 55-78 (233)
210 1lj9_A Transcriptional regulat 93.0 0.039 1.3E-06 40.1 1.9 64 40-112 31-97 (144)
211 1o9g_A RRNA methyltransferase; 93.0 0.086 2.9E-06 42.2 4.1 31 186-217 42-72 (250)
212 2qlz_A Transcription factor PF 92.9 0.033 1.1E-06 44.9 1.5 68 32-108 6-78 (232)
213 1vlm_A SAM-dependent methyltra 92.9 0.11 3.7E-06 40.5 4.5 20 197-216 48-67 (219)
214 3e6m_A MARR family transcripti 92.9 0.04 1.4E-06 41.0 1.9 65 40-112 55-121 (161)
215 3adn_A Spermidine synthase; am 92.9 0.062 2.1E-06 44.7 3.2 24 196-219 83-106 (294)
216 2obp_A Putative DNA-binding pr 92.9 0.064 2.2E-06 37.1 2.7 53 54-111 35-87 (96)
217 3c3y_A Pfomt, O-methyltransfer 92.9 0.16 5.5E-06 40.4 5.5 24 196-219 70-93 (237)
218 1p91_A Ribosomal RNA large sub 92.8 0.14 4.8E-06 41.1 5.2 25 196-220 85-109 (269)
219 2h00_A Methyltransferase 10 do 92.8 0.044 1.5E-06 43.9 2.1 25 196-220 65-89 (254)
220 2cfx_A HTH-type transcriptiona 92.8 0.078 2.7E-06 39.0 3.3 47 39-93 6-52 (144)
221 1zx0_A Guanidinoacetate N-meth 92.8 0.079 2.7E-06 41.9 3.6 23 196-218 60-82 (236)
222 3f3x_A Transcriptional regulat 92.8 0.19 6.5E-06 36.3 5.4 64 39-112 38-104 (144)
223 3s2w_A Transcriptional regulat 92.8 0.04 1.4E-06 40.9 1.7 64 41-112 53-118 (159)
224 4hc4_A Protein arginine N-meth 92.7 0.12 4E-06 44.7 4.8 42 164-217 63-104 (376)
225 3hrs_A Metalloregulator SCAR; 92.7 0.045 1.5E-06 43.4 2.0 50 54-112 19-68 (214)
226 2w25_A Probable transcriptiona 92.7 0.079 2.7E-06 39.2 3.3 47 39-93 8-54 (150)
227 1g8a_A Fibrillarin-like PRE-rR 92.7 0.068 2.3E-06 41.9 3.1 25 194-218 71-95 (227)
228 3gjy_A Spermidine synthase; AP 92.7 0.066 2.2E-06 45.2 3.1 24 198-221 91-114 (317)
229 3deu_A Transcriptional regulat 92.7 0.059 2E-06 40.6 2.6 67 39-112 54-122 (166)
230 3tgn_A ADC operon repressor AD 92.7 0.072 2.5E-06 38.6 3.0 65 39-112 39-105 (146)
231 3tfw_A Putative O-methyltransf 92.7 0.069 2.4E-06 42.9 3.2 24 196-219 63-86 (248)
232 2p4w_A Transcriptional regulat 92.7 0.1 3.5E-06 41.0 4.0 67 33-108 10-80 (202)
233 1ku9_A Hypothetical protein MJ 92.6 0.088 3E-06 38.2 3.4 44 43-93 31-74 (152)
234 3b3j_A Histone-arginine methyl 92.6 0.18 6.2E-06 44.8 6.0 32 185-217 148-179 (480)
235 3r0q_C Probable protein argini 92.6 0.14 4.9E-06 43.8 5.2 25 194-218 61-85 (376)
236 4aik_A Transcriptional regulat 92.6 0.12 4.2E-06 38.2 4.2 64 41-112 34-100 (151)
237 2fe3_A Peroxide operon regulat 92.5 0.14 4.8E-06 37.9 4.4 65 39-105 23-87 (145)
238 2pxx_A Uncharacterized protein 92.5 0.075 2.6E-06 40.8 3.0 25 195-219 41-65 (215)
239 3dr5_A Putative O-methyltransf 92.4 0.16 5.3E-06 40.2 4.9 22 198-219 58-79 (221)
240 3m70_A Tellurite resistance pr 92.4 0.067 2.3E-06 43.6 2.7 22 196-217 120-141 (286)
241 2wa2_A Non-structural protein 92.4 0.13 4.3E-06 42.4 4.4 31 186-217 73-103 (276)
242 3u81_A Catechol O-methyltransf 92.4 0.084 2.9E-06 41.4 3.2 23 197-219 59-81 (221)
243 3r3h_A O-methyltransferase, SA 92.3 0.08 2.7E-06 42.5 3.1 23 197-219 61-83 (242)
244 2oxt_A Nucleoside-2'-O-methylt 92.3 0.13 4.4E-06 42.0 4.4 24 194-217 72-95 (265)
245 4hbl_A Transcriptional regulat 92.3 0.039 1.3E-06 40.6 1.1 66 39-112 42-109 (149)
246 2ex4_A Adrenal gland protein A 92.3 0.067 2.3E-06 42.4 2.6 23 196-218 79-101 (241)
247 1ixk_A Methyltransferase; open 92.3 0.12 4.1E-06 43.2 4.3 30 189-219 112-141 (315)
248 3grz_A L11 mtase, ribosomal pr 92.3 0.14 4.9E-06 39.3 4.4 22 196-217 60-81 (205)
249 3eco_A MEPR; mutlidrug efflux 92.3 0.06 2.1E-06 38.8 2.1 68 39-112 32-101 (139)
250 2gs9_A Hypothetical protein TT 92.2 0.12 4E-06 39.9 3.8 26 187-214 29-54 (211)
251 2p5v_A Transcriptional regulat 92.2 0.099 3.4E-06 39.2 3.3 47 39-93 11-57 (162)
252 2dbb_A Putative HTH-type trans 92.2 0.11 3.6E-06 38.5 3.4 47 39-93 10-56 (151)
253 3hp7_A Hemolysin, putative; st 92.2 0.2 6.7E-06 41.7 5.4 32 185-217 74-106 (291)
254 2pn6_A ST1022, 150AA long hypo 92.2 0.068 2.3E-06 39.5 2.3 47 39-93 4-50 (150)
255 2o03_A Probable zinc uptake re 92.2 0.16 5.5E-06 36.8 4.3 61 37-104 10-75 (131)
256 3h2b_A SAM-dependent methyltra 92.1 0.08 2.7E-06 40.6 2.8 22 197-218 42-63 (203)
257 2hnk_A SAM-dependent O-methylt 92.1 0.1 3.4E-06 41.5 3.4 23 197-219 61-83 (239)
258 3m33_A Uncharacterized protein 92.0 0.089 3.1E-06 41.4 2.9 22 196-217 48-69 (226)
259 3l8d_A Methyltransferase; stru 91.9 0.11 3.6E-06 41.0 3.3 22 196-217 53-74 (242)
260 1sui_A Caffeoyl-COA O-methyltr 91.9 0.1 3.6E-06 41.9 3.3 23 197-219 80-102 (247)
261 1p6r_A Penicillinase repressor 91.9 0.066 2.3E-06 35.3 1.7 50 40-93 11-60 (82)
262 2frh_A SARA, staphylococcal ac 91.9 0.054 1.9E-06 38.9 1.4 67 40-112 39-107 (127)
263 2fbk_A Transcriptional regulat 91.8 0.066 2.3E-06 40.7 1.9 68 40-112 71-140 (181)
264 1wy7_A Hypothetical protein PH 91.8 0.19 6.5E-06 38.6 4.6 23 196-218 49-71 (207)
265 2fxa_A Protease production reg 91.7 0.065 2.2E-06 42.0 1.9 65 40-112 50-116 (207)
266 3bwc_A Spermidine synthase; SA 91.7 0.1 3.5E-06 43.4 3.1 25 195-219 94-118 (304)
267 2b25_A Hypothetical protein; s 91.6 0.19 6.6E-06 42.0 4.8 33 185-218 95-127 (336)
268 3bzb_A Uncharacterized protein 91.6 0.16 5.3E-06 41.6 4.1 23 196-218 79-101 (281)
269 2bm8_A Cephalosporin hydroxyla 91.6 0.13 4.6E-06 41.0 3.6 21 197-217 82-102 (236)
270 4df3_A Fibrillarin-like rRNA/T 91.6 0.097 3.3E-06 42.1 2.7 31 187-217 66-98 (233)
271 2cg4_A Regulatory protein ASNC 91.5 0.11 3.6E-06 38.6 2.8 47 39-93 9-55 (152)
272 2ia0_A Putative HTH-type trans 91.5 0.13 4.5E-06 39.1 3.3 47 39-93 18-64 (171)
273 2ift_A Putative methylase HI07 91.5 0.12 4.1E-06 40.0 3.1 22 197-218 54-75 (201)
274 3cbg_A O-methyltransferase; cy 91.4 0.12 4.2E-06 40.9 3.2 23 197-219 73-95 (232)
275 2ih2_A Modification methylase 91.4 0.21 7.3E-06 42.9 5.0 32 186-218 30-61 (421)
276 3p9n_A Possible methyltransfer 91.3 0.13 4.3E-06 39.2 3.1 21 197-217 45-65 (189)
277 3q7e_A Protein arginine N-meth 91.3 0.12 4.2E-06 43.8 3.3 21 197-217 67-87 (349)
278 2p41_A Type II methyltransfera 91.3 0.099 3.4E-06 43.7 2.6 24 194-217 80-103 (305)
279 3ua3_A Protein arginine N-meth 91.3 0.2 6.9E-06 46.7 4.8 49 158-213 378-426 (745)
280 1uly_A Hypothetical protein PH 91.2 0.16 5.5E-06 39.5 3.6 51 34-93 16-66 (192)
281 2dk5_A DNA-directed RNA polyme 91.2 0.16 5.4E-06 34.7 3.1 47 41-93 23-69 (91)
282 3ocj_A Putative exported prote 91.2 0.07 2.4E-06 44.1 1.6 27 194-220 116-143 (305)
283 3fpf_A Mtnas, putative unchara 91.2 0.46 1.6E-05 39.6 6.6 27 194-220 120-146 (298)
284 4gqb_A Protein arginine N-meth 91.2 0.19 6.4E-06 46.4 4.5 51 158-215 323-376 (637)
285 2d1h_A ST1889, 109AA long hypo 91.1 0.14 4.7E-06 35.0 2.8 35 54-93 35-69 (109)
286 1xj5_A Spermidine synthase 1; 91.1 0.12 3.9E-06 43.9 2.8 26 195-220 119-144 (334)
287 1iy9_A Spermidine synthase; ro 91.0 0.11 3.8E-06 42.6 2.6 24 196-219 75-98 (275)
288 2pbf_A Protein-L-isoaspartate 91.0 0.27 9.2E-06 38.4 4.8 25 194-218 78-102 (227)
289 2cyy_A Putative HTH-type trans 91.0 0.097 3.3E-06 38.8 2.0 47 39-93 8-54 (151)
290 3lcc_A Putative methyl chlorid 90.9 0.13 4.6E-06 40.4 2.9 28 187-216 59-86 (235)
291 2gb4_A Thiopurine S-methyltran 90.9 0.13 4.3E-06 41.7 2.8 22 196-217 68-89 (252)
292 1r18_A Protein-L-isoaspartate( 90.9 0.19 6.4E-06 39.4 3.8 25 194-218 82-106 (227)
293 1ne2_A Hypothetical protein TA 90.9 0.13 4.5E-06 39.4 2.8 22 196-217 51-72 (200)
294 2xvc_A ESCRT-III, SSO0910; cel 90.8 0.12 4E-06 32.0 1.9 46 40-92 12-57 (59)
295 2fpo_A Methylase YHHF; structu 90.8 0.16 5.5E-06 39.3 3.2 22 197-218 55-76 (202)
296 3a27_A TYW2, uncharacterized p 90.7 0.15 5E-06 41.6 3.1 26 194-219 117-142 (272)
297 3gdh_A Trimethylguanosine synt 90.7 0.14 4.8E-06 40.4 2.9 22 197-218 79-100 (241)
298 1sfu_A 34L protein; protein/Z- 90.7 0.48 1.7E-05 31.0 4.9 50 46-105 23-72 (75)
299 2e1c_A Putative HTH-type trans 90.6 0.13 4.6E-06 39.1 2.6 47 39-93 28-74 (171)
300 2avn_A Ubiquinone/menaquinone 90.6 0.15 5E-06 41.0 2.9 22 196-217 54-75 (260)
301 2pt6_A Spermidine synthase; tr 90.6 0.12 4.3E-06 43.3 2.6 25 196-220 116-140 (321)
302 4azs_A Methyltransferase WBDD; 90.6 0.15 5E-06 46.3 3.2 22 196-217 66-87 (569)
303 1uir_A Polyamine aminopropyltr 90.6 0.13 4.5E-06 43.0 2.7 25 196-220 77-101 (314)
304 3jw4_A Transcriptional regulat 90.6 0.48 1.6E-05 34.3 5.5 67 40-112 43-111 (148)
305 2i7c_A Spermidine synthase; tr 90.5 0.13 4.4E-06 42.3 2.6 25 195-219 77-101 (283)
306 1inl_A Spermidine synthase; be 90.5 0.13 4.5E-06 42.6 2.6 23 197-219 91-113 (296)
307 1ri5_A MRNA capping enzyme; me 90.4 0.29 1E-05 39.6 4.7 23 195-217 63-85 (298)
308 2o07_A Spermidine synthase; st 90.4 0.13 4.5E-06 42.8 2.6 25 195-219 94-118 (304)
309 3tm4_A TRNA (guanine N2-)-meth 90.4 0.26 8.8E-06 42.2 4.4 26 194-219 215-240 (373)
310 1okr_A MECI, methicillin resis 90.3 0.058 2E-06 38.2 0.3 45 41-93 13-61 (123)
311 1i1g_A Transcriptional regulat 90.3 0.12 4.1E-06 37.6 2.0 46 40-93 6-51 (141)
312 3i4p_A Transcriptional regulat 90.3 0.14 4.7E-06 38.6 2.3 47 39-93 4-50 (162)
313 3k2z_A LEXA repressor; winged 90.3 0.17 5.7E-06 39.3 2.9 42 45-93 16-57 (196)
314 3evz_A Methyltransferase; NYSG 90.3 0.2 6.9E-06 39.1 3.4 24 194-217 53-77 (230)
315 3gcz_A Polyprotein; flavivirus 90.2 0.32 1.1E-05 40.2 4.6 36 182-218 77-112 (282)
316 1y8c_A S-adenosylmethionine-de 90.1 0.12 4E-06 40.6 1.9 23 196-218 37-59 (246)
317 3nqo_A MARR-family transcripti 90.1 0.14 4.7E-06 39.4 2.3 71 37-113 40-112 (189)
318 4fsd_A Arsenic methyltransfera 90.1 0.16 5.4E-06 43.6 2.8 23 196-218 83-105 (383)
319 2frn_A Hypothetical protein PH 90.1 0.19 6.5E-06 41.1 3.2 26 195-220 124-149 (278)
320 3ajd_A Putative methyltransfer 90.0 0.15 5.1E-06 41.6 2.5 27 194-220 81-107 (274)
321 1mjf_A Spermidine synthase; sp 89.9 0.16 5.3E-06 41.8 2.6 23 196-219 75-97 (281)
322 2b2c_A Spermidine synthase; be 89.9 0.17 5.7E-06 42.5 2.8 25 196-220 108-132 (314)
323 3id6_C Fibrillarin-like rRNA/T 89.8 0.25 8.7E-06 39.6 3.7 24 194-217 74-97 (232)
324 2vn2_A DNAD, chromosome replic 89.6 0.21 7.3E-06 36.1 2.8 34 55-93 51-84 (128)
325 3u1d_A Uncharacterized protein 89.6 0.32 1.1E-05 36.4 3.8 88 39-144 30-125 (151)
326 2xig_A Ferric uptake regulatio 89.5 0.38 1.3E-05 35.7 4.2 62 37-105 26-92 (150)
327 3mwm_A ZUR, putative metal upt 89.4 0.31 1E-05 35.7 3.6 67 37-105 13-79 (139)
328 3evf_A RNA-directed RNA polyme 89.4 0.4 1.4E-05 39.5 4.6 33 185-218 64-96 (277)
329 3k0b_A Predicted N6-adenine-sp 89.3 0.36 1.2E-05 41.7 4.6 35 183-218 189-223 (393)
330 3ldu_A Putative methylase; str 89.3 0.36 1.2E-05 41.6 4.5 34 183-217 183-216 (385)
331 1i1n_A Protein-L-isoaspartate 89.3 0.26 9.1E-06 38.4 3.4 24 195-218 76-99 (226)
332 2a14_A Indolethylamine N-methy 89.2 0.11 3.8E-06 41.9 1.2 19 196-214 55-73 (263)
333 3frh_A 16S rRNA methylase; met 89.0 0.18 6.1E-06 41.0 2.2 22 194-215 103-124 (253)
334 2vdw_A Vaccinia virus capping 89.0 0.2 6.8E-06 41.6 2.6 21 197-217 49-69 (302)
335 1j5y_A Transcriptional regulat 88.9 0.27 9.2E-06 37.9 3.1 58 39-108 22-80 (187)
336 2v79_A DNA replication protein 88.4 0.25 8.5E-06 36.2 2.5 35 54-93 50-84 (135)
337 1uwv_A 23S rRNA (uracil-5-)-me 88.3 0.24 8.2E-06 43.3 2.7 31 186-217 277-307 (433)
338 1af7_A Chemotaxis receptor met 88.3 0.58 2E-05 38.4 4.9 23 197-219 106-132 (274)
339 2cmg_A Spermidine synthase; tr 88.3 0.22 7.4E-06 40.6 2.3 22 196-217 72-93 (262)
340 2yxl_A PH0851 protein, 450AA l 88.0 0.38 1.3E-05 42.2 3.8 51 169-220 233-283 (450)
341 3ldg_A Putative uncharacterize 87.9 0.51 1.7E-05 40.7 4.5 35 182-217 181-215 (384)
342 4b8x_A SCO5413, possible MARR- 87.9 0.11 3.8E-06 38.2 0.2 53 54-112 50-105 (147)
343 1z6r_A MLC protein; transcript 87.4 0.47 1.6E-05 40.8 4.0 51 35-93 13-63 (406)
344 4g6q_A Putative uncharacterize 87.4 0.2 6.8E-06 38.6 1.5 68 35-111 20-92 (182)
345 3lcv_B Sisomicin-gentamicin re 87.2 0.11 3.8E-06 42.8 -0.1 26 195-220 131-156 (281)
346 1v4r_A Transcriptional repress 87.2 0.55 1.9E-05 32.1 3.6 52 34-93 15-68 (102)
347 4fx0_A Probable transcriptiona 87.2 0.18 6.1E-06 37.2 1.0 64 42-112 37-105 (148)
348 1fx7_A Iron-dependent represso 86.8 0.25 8.4E-06 39.3 1.7 47 57-112 26-72 (230)
349 3htx_A HEN1; HEN1, small RNA m 86.6 0.33 1.1E-05 46.2 2.8 24 196-219 721-744 (950)
350 3cta_A Riboflavin kinase; stru 86.6 0.25 8.6E-06 39.2 1.7 54 54-113 26-79 (230)
351 2g9w_A Conserved hypothetical 86.4 0.38 1.3E-05 34.9 2.5 48 39-93 10-61 (138)
352 2esh_A Conserved hypothetical 86.2 1.2 4E-05 31.5 5.0 69 35-112 10-90 (118)
353 1sqg_A SUN protein, FMU protei 86.2 0.42 1.4E-05 41.6 3.0 32 188-220 239-270 (429)
354 2i62_A Nicotinamide N-methyltr 85.9 0.14 4.7E-06 40.8 -0.2 24 196-219 56-79 (265)
355 1mzb_A Ferric uptake regulatio 85.9 0.67 2.3E-05 33.6 3.6 65 39-104 19-83 (136)
356 2pjp_A Selenocysteine-specific 85.5 0.36 1.2E-05 34.4 1.9 43 55-106 20-62 (121)
357 3dmg_A Probable ribosomal RNA 85.2 0.44 1.5E-05 41.0 2.7 21 197-217 234-254 (381)
358 2hoe_A N-acetylglucosamine kin 85.2 0.37 1.3E-05 41.2 2.2 55 30-93 12-66 (380)
359 1sd4_A Penicillinase repressor 85.2 0.31 1.1E-05 34.5 1.5 50 40-93 12-61 (126)
360 2r6z_A UPF0341 protein in RSP 84.8 0.54 1.9E-05 38.1 2.9 22 196-217 83-104 (258)
361 1p4x_A Staphylococcal accessor 84.7 0.45 1.6E-05 38.5 2.4 67 40-113 160-229 (250)
362 2yu3_A DNA-directed RNA polyme 84.0 0.55 1.9E-05 32.3 2.2 49 39-93 38-86 (95)
363 3i71_A Ethanolamine utilizatio 83.6 2 7E-05 26.5 4.4 43 54-106 17-59 (68)
364 2qfm_A Spermine synthase; sper 83.4 0.73 2.5E-05 39.5 3.2 24 196-219 188-211 (364)
365 2qq9_A Diphtheria toxin repres 83.4 0.64 2.2E-05 36.8 2.7 50 55-113 24-73 (226)
366 3maj_A DNA processing chain A; 83.3 0.47 1.6E-05 40.9 1.9 53 40-105 330-382 (382)
367 1jhg_A Trp operon repressor; c 83.2 0.85 2.9E-05 31.7 2.9 41 36-85 43-83 (101)
368 1hsj_A Fusion protein consisti 83.2 0.53 1.8E-05 41.3 2.3 66 41-112 407-474 (487)
369 2f8l_A Hypothetical protein LM 83.1 0.41 1.4E-05 40.3 1.5 24 196-219 130-153 (344)
370 2okc_A Type I restriction enzy 82.6 1.3 4.4E-05 38.7 4.6 32 185-217 161-192 (445)
371 4esf_A PADR-like transcription 82.6 1.4 4.8E-05 31.2 4.0 70 34-112 7-86 (117)
372 3m6w_A RRNA methylase; rRNA me 82.5 0.65 2.2E-05 41.1 2.6 27 194-220 99-125 (464)
373 2g72_A Phenylethanolamine N-me 82.4 0.73 2.5E-05 37.4 2.8 16 196-211 71-86 (289)
374 1cf7_A Protein (transcription 82.3 1.2 4E-05 29.3 3.2 36 54-93 29-64 (76)
375 3lmm_A Uncharacterized protein 81.3 1 3.5E-05 41.0 3.6 60 40-112 432-496 (583)
376 1z05_A Transcriptional regulat 81.0 1.2 4E-05 38.7 3.7 52 34-93 35-86 (429)
377 2ek5_A Predicted transcription 81.0 1.8 6.1E-05 31.1 4.1 35 54-93 26-61 (129)
378 2o0m_A Transcriptional regulat 80.8 0.32 1.1E-05 41.2 0.0 60 40-112 22-81 (345)
379 2igt_A SAM dependent methyltra 80.3 1.1 3.7E-05 37.7 3.1 22 197-218 154-175 (332)
380 3elk_A Putative transcriptiona 80.3 1.1 3.9E-05 31.7 2.8 71 33-112 9-89 (117)
381 2oyr_A UPF0341 protein YHIQ; a 79.8 1.5 5.3E-05 35.5 3.8 20 198-217 90-109 (258)
382 3bt7_A TRNA (uracil-5-)-methyl 79.6 0.98 3.3E-05 38.4 2.7 30 187-218 206-235 (369)
383 1bia_A BIRA bifunctional prote 79.6 1.2 4.2E-05 37.2 3.2 56 40-106 7-62 (321)
384 3f8b_A Transcriptional regulat 79.5 2.2 7.6E-05 30.0 4.2 71 33-112 7-89 (116)
385 3tqn_A Transcriptional regulat 79.3 1.2 4.1E-05 31.2 2.6 35 54-93 31-66 (113)
386 2p8t_A Hypothetical protein PH 79.1 0.95 3.2E-05 35.4 2.2 47 54-110 29-75 (200)
387 2vxz_A Pyrsv_GP04; viral prote 79.0 1.1 3.6E-05 33.4 2.3 105 41-176 14-118 (165)
388 2jjq_A Uncharacterized RNA met 78.7 1.1 3.7E-05 39.1 2.7 23 196-218 290-312 (425)
389 2qlz_A Transcription factor PF 78.6 1.3 4.4E-05 35.5 2.9 52 41-105 168-219 (232)
390 3eyi_A Z-DNA-binding protein 1 78.5 2.8 9.7E-05 26.8 3.9 47 40-93 12-58 (72)
391 3u5c_Z RP45, S31, YS23, 40S ri 78.3 4.3 0.00015 28.4 5.1 36 54-94 58-93 (108)
392 2w57_A Ferric uptake regulatio 78.3 1 3.5E-05 33.3 2.2 65 39-104 18-82 (150)
393 3m4x_A NOL1/NOP2/SUN family pr 77.9 0.93 3.2E-05 40.0 2.0 26 194-219 103-128 (456)
394 3ll7_A Putative methyltransfer 77.5 1.2 4.1E-05 38.8 2.6 22 197-218 94-115 (410)
395 3rkx_A Biotin-[acetyl-COA-carb 77.4 1.9 6.6E-05 36.1 3.8 59 40-107 5-63 (323)
396 3eyy_A Putative iron uptake re 77.3 1.4 4.8E-05 32.3 2.6 63 39-104 20-82 (145)
397 3hhh_A Transcriptional regulat 77.2 1.8 6E-05 30.6 3.0 71 33-112 8-88 (116)
398 1xma_A Predicted transcription 77.1 0.89 3E-05 33.6 1.4 69 35-112 38-118 (145)
399 2b0l_A GTP-sensing transcripti 76.8 1.3 4.3E-05 30.6 2.1 35 54-93 41-76 (102)
400 3v97_A Ribosomal RNA large sub 76.6 2.4 8.3E-05 39.4 4.6 34 183-217 178-211 (703)
401 3by6_A Predicted transcription 76.4 1.6 5.4E-05 31.2 2.6 35 54-93 33-68 (126)
402 2frx_A Hypothetical protein YE 76.3 2.3 7.9E-05 37.6 4.2 24 196-219 117-140 (479)
403 2p5k_A Arginine repressor; DNA 76.2 2.2 7.5E-05 26.0 3.0 37 45-93 12-53 (64)
404 3p8z_A Mtase, non-structural p 76.2 3.1 0.00011 33.7 4.4 34 183-217 66-99 (267)
405 3b5i_A S-adenosyl-L-methionine 76.2 2.8 9.4E-05 36.0 4.5 18 197-214 53-70 (374)
406 3neu_A LIN1836 protein; struct 76.2 2.1 7.4E-05 30.4 3.3 35 54-93 35-70 (125)
407 3sso_A Methyltransferase; macr 75.9 1.4 4.8E-05 38.4 2.6 25 196-220 216-247 (419)
408 2as0_A Hypothetical protein PH 75.9 1.6 5.5E-05 37.3 3.0 22 196-217 217-238 (396)
409 3eld_A Methyltransferase; flav 75.7 3.3 0.00011 34.4 4.7 31 186-217 72-102 (300)
410 1yg2_A Gene activator APHA; vi 75.6 2 6.8E-05 32.6 3.2 62 39-109 3-76 (179)
411 4ets_A Ferric uptake regulatio 75.4 1.4 4.7E-05 33.1 2.2 65 39-105 34-100 (162)
412 2b78_A Hypothetical protein SM 75.3 1.6 5.5E-05 37.4 2.8 22 196-217 212-233 (385)
413 3l7w_A Putative uncharacterize 74.9 1.7 5.8E-05 30.1 2.4 66 38-112 9-81 (108)
414 3k6r_A Putative transferase PH 74.9 1.4 4.9E-05 36.2 2.3 23 195-217 124-146 (278)
415 3c0k_A UPF0064 protein YCCW; P 74.9 1.7 5.8E-05 37.2 2.9 22 196-217 220-241 (396)
416 2k4m_A TR8_protein, UPF0146 pr 74.8 2.4 8.1E-05 31.6 3.2 21 196-216 35-56 (153)
417 2ar0_A M.ecoki, type I restric 74.6 2.5 8.6E-05 38.0 4.0 30 187-217 161-190 (541)
418 4dmg_A Putative uncharacterize 73.6 2.1 7.1E-05 36.9 3.1 22 197-218 215-236 (393)
419 3lkz_A Non-structural protein 73.5 3.1 0.00011 34.7 3.9 32 184-216 83-114 (321)
420 1lva_A Selenocysteine-specific 73.4 3.5 0.00012 33.3 4.2 59 38-106 141-199 (258)
421 2px2_A Genome polyprotein [con 73.2 3.1 0.00011 33.9 3.8 33 184-217 62-94 (269)
422 1wxx_A TT1595, hypothetical pr 72.8 2 6.7E-05 36.6 2.7 22 196-217 209-230 (382)
423 4ham_A LMO2241 protein; struct 72.8 2.2 7.5E-05 30.7 2.6 42 54-103 36-78 (134)
424 3ic7_A Putative transcriptiona 72.5 1.5 5.1E-05 31.4 1.6 35 54-93 33-68 (126)
425 3c7j_A Transcriptional regulat 71.9 3 0.0001 33.1 3.4 35 54-93 48-82 (237)
426 2gqq_A Leucine-responsive regu 71.6 0.82 2.8E-05 34.1 0.0 46 39-92 14-59 (163)
427 2w48_A Sorbitol operon regulat 71.4 3.4 0.00012 34.2 3.8 35 54-93 20-55 (315)
428 3giw_A Protein of unknown func 71.2 4.2 0.00014 33.4 4.2 25 196-220 78-105 (277)
429 2yx1_A Hypothetical protein MJ 70.9 2 6.8E-05 36.0 2.3 20 196-216 195-214 (336)
430 2dul_A N(2),N(2)-dimethylguano 70.9 3.6 0.00012 35.2 3.9 24 197-220 48-71 (378)
431 2pi2_A Replication protein A 3 70.7 0.87 3E-05 37.2 0.0 60 39-106 208-268 (270)
432 1p4x_A Staphylococcal accessor 69.9 2.6 9E-05 33.9 2.7 66 41-112 37-104 (250)
433 3cuq_B Vacuolar protein-sortin 69.7 5.8 0.0002 31.3 4.7 35 54-93 167-201 (218)
434 3qph_A TRMB, A global transcri 68.9 0.5 1.7E-05 40.1 -1.9 58 39-106 19-76 (342)
435 1i4w_A Mitochondrial replicati 68.8 4.1 0.00014 34.6 3.8 21 197-217 59-79 (353)
436 1tc3_C Protein (TC3 transposas 67.4 2.9 9.8E-05 23.5 1.9 27 55-86 21-47 (51)
437 3kor_A Possible Trp repressor; 67.2 8.3 0.00028 27.4 4.5 40 36-85 61-100 (119)
438 1zkd_A DUF185; NESG, RPR58, st 67.1 7.4 0.00025 33.5 5.1 49 164-217 53-101 (387)
439 2gau_A Transcriptional regulat 67.1 5 0.00017 30.8 3.8 34 55-93 180-213 (232)
440 2gmg_A Hypothetical protein PF 66.9 3.1 0.00011 28.9 2.2 45 39-88 12-60 (105)
441 2oz6_A Virulence factor regula 66.8 3.4 0.00012 31.0 2.7 34 55-93 164-197 (207)
442 2b9e_A NOL1/NOP2/SUN domain fa 66.7 2.5 8.4E-05 35.1 2.0 25 194-218 100-124 (309)
443 3dv8_A Transcriptional regulat 66.1 4.2 0.00014 30.8 3.1 34 55-93 169-202 (220)
444 3o4f_A Spermidine synthase; am 65.8 4.2 0.00014 33.7 3.2 24 196-219 83-106 (294)
445 3lsg_A Two-component response 65.4 6.8 0.00023 26.3 3.8 34 54-92 18-51 (103)
446 2bgc_A PRFA; bacterial infecti 65.3 7.6 0.00026 30.0 4.6 34 55-93 169-203 (238)
447 1stz_A Heat-inducible transcri 65.2 5.8 0.0002 33.4 4.0 41 46-94 30-72 (338)
448 2xzm_8 RPS25E,; ribosome, tran 65.1 3.2 0.00011 30.4 2.0 34 55-93 63-96 (143)
449 3s1s_A Restriction endonucleas 65.1 4.7 0.00016 38.3 3.7 26 194-219 319-344 (878)
450 2zcw_A TTHA1359, transcription 65.0 4 0.00014 30.7 2.8 34 55-93 146-179 (202)
451 4esb_A Transcriptional regulat 64.9 3 0.0001 29.3 1.9 64 40-112 11-84 (115)
452 3lmm_A Uncharacterized protein 64.8 1.4 4.6E-05 40.2 0.0 45 41-93 519-563 (583)
453 3e97_A Transcriptional regulat 64.6 4.7 0.00016 31.0 3.1 34 55-93 175-208 (231)
454 3ryp_A Catabolite gene activat 64.4 4.1 0.00014 30.6 2.8 34 55-93 167-200 (210)
455 3b02_A Transcriptional regulat 64.2 4.3 0.00015 30.4 2.8 34 55-93 139-172 (195)
456 3iwz_A CAP-like, catabolite ac 63.6 4.3 0.00015 31.0 2.8 34 55-93 187-220 (230)
457 4ev0_A Transcription regulator 63.1 4.4 0.00015 30.6 2.7 34 55-93 163-196 (216)
458 2py6_A Methyltransferase FKBM; 63.1 6.5 0.00022 33.9 4.0 25 195-219 225-250 (409)
459 3ke2_A Uncharacterized protein 62.9 8 0.00027 27.3 3.7 34 55-93 33-66 (117)
460 2k9s_A Arabinose operon regula 62.7 8.8 0.0003 25.9 4.0 34 54-92 19-52 (107)
461 3la7_A Global nitrogen regulat 62.7 5.2 0.00018 31.2 3.1 34 55-93 193-226 (243)
462 3d0s_A Transcriptional regulat 62.6 5.2 0.00018 30.6 3.1 34 55-93 177-210 (227)
463 3dkw_A DNR protein; CRP-FNR, H 62.4 5.4 0.00018 30.4 3.1 34 55-93 178-211 (227)
464 3sxy_A Transcriptional regulat 62.2 4.3 0.00015 31.5 2.5 35 54-93 34-68 (218)
465 3l4g_A Phenylalanyl-tRNA synth 60.8 1.8 6.1E-05 38.7 0.0 69 39-116 6-76 (508)
466 2hs5_A Putative transcriptiona 60.4 6 0.00021 31.3 3.1 35 54-93 50-84 (239)
467 2zig_A TTHA0409, putative modi 60.2 5.6 0.00019 32.5 3.0 32 184-217 225-256 (297)
468 2efj_A 3,7-dimethylxanthine me 60.2 5 0.00017 34.5 2.8 21 197-217 53-73 (384)
469 4f3n_A Uncharacterized ACR, CO 59.9 16 0.00054 31.9 5.9 47 164-218 113-159 (432)
470 3e6c_C CPRK, cyclic nucleotide 59.9 6 0.00021 30.9 3.0 34 55-93 177-210 (250)
471 1zyb_A Transcription regulator 59.3 6.1 0.00021 30.5 3.0 34 55-93 186-219 (232)
472 1hw1_A FADR, fatty acid metabo 59.2 6.1 0.00021 30.9 3.0 44 54-105 29-73 (239)
473 2jpc_A SSRB; DNA binding prote 58.9 6.2 0.00021 23.6 2.4 25 41-71 4-28 (61)
474 3l9f_A Putative uncharacterize 58.8 3.4 0.00012 32.2 1.3 59 42-109 40-110 (204)
475 3f2g_A Alkylmercury lyase; MER 58.8 12 0.00041 29.6 4.5 41 42-93 26-66 (220)
476 2qen_A Walker-type ATPase; unk 58.8 30 0.001 27.9 7.3 51 40-104 284-339 (350)
477 3bwg_A Uncharacterized HTH-typ 57.9 9.9 0.00034 30.0 4.0 43 54-104 27-70 (239)
478 3pfi_A Holliday junction ATP-d 57.6 7.9 0.00027 31.8 3.5 56 43-109 268-324 (338)
479 3ihu_A Transcriptional regulat 57.3 7.3 0.00025 30.2 3.1 35 54-93 38-72 (222)
480 3mn2_A Probable ARAC family tr 56.3 5.7 0.00019 27.0 2.0 34 54-92 17-50 (108)
481 2qko_A Possible transcriptiona 55.8 20 0.0007 26.7 5.4 35 30-71 29-63 (215)
482 3eqx_A FIC domain containing t 55.6 6.8 0.00023 33.5 2.8 64 43-115 302-365 (373)
483 2fmy_A COOA, carbon monoxide o 55.2 6.8 0.00023 29.8 2.5 33 55-92 167-199 (220)
484 3v97_A Ribosomal RNA large sub 54.9 7.3 0.00025 36.2 3.1 21 197-217 540-560 (703)
485 2zfw_A PEX; five alpha-helices 54.9 11 0.00039 27.7 3.6 61 43-112 49-121 (148)
486 3edp_A LIN2111 protein; APC883 54.8 13 0.00045 29.3 4.3 45 54-106 31-76 (236)
487 3kcc_A Catabolite gene activat 54.5 7.3 0.00025 30.8 2.7 34 55-93 217-250 (260)
488 1ft9_A Carbon monoxide oxidati 54.4 8.4 0.00029 29.4 3.0 34 55-93 163-196 (222)
489 2wv0_A YVOA, HTH-type transcri 54.3 9.6 0.00033 30.2 3.4 44 54-105 32-76 (243)
490 2qc0_A Uncharacterized protein 54.3 7.3 0.00025 33.2 2.8 65 42-115 301-365 (373)
491 3oou_A LIN2118 protein; protei 54.1 6.4 0.00022 26.7 2.0 34 54-92 20-53 (108)
492 3to7_A Histone acetyltransfera 53.6 10 0.00035 30.9 3.3 47 28-93 192-238 (276)
493 1u5t_A Appears to BE functiona 53.3 12 0.00039 29.9 3.6 35 54-93 180-214 (233)
494 1hst_A Histone H5; chromosomal 52.9 34 0.0012 22.8 5.5 53 54-108 25-81 (90)
495 3oio_A Transcriptional regulat 52.9 11 0.00036 25.8 3.0 42 45-92 14-55 (113)
496 2elj_A Transcriptional adapter 52.3 17 0.00058 24.2 3.8 60 24-90 29-88 (88)
497 3khk_A Type I restriction-modi 51.7 13 0.00044 33.4 4.1 32 184-217 234-265 (544)
498 3iz6_V 40S ribosomal protein S 51.4 4 0.00014 28.6 0.5 35 54-93 59-93 (108)
499 4auk_A Ribosomal RNA large sub 49.7 12 0.00041 32.1 3.3 24 194-217 209-232 (375)
500 3mkl_A HTH-type transcriptiona 49.6 15 0.0005 25.4 3.4 33 45-83 14-46 (120)
No 1
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=1.5e-35 Score=258.39 Aligned_cols=217 Identities=39% Similarity=0.752 Sum_probs=182.9
Q ss_pred CCCcccCCCcCCchhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCC-CCCcchhhhHHH
Q 036971 1 MGSSTESKSKVTNEEEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPT-KNPEGAAKMLDR 79 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~-~~~~~~~~~l~r 79 (221)
|||..++ ++++|..+++..+++++++++.+++|++|++|||||+|++.| ++|+|++|||+++|+ .+|+ ++..|+|
T Consensus 5 ~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~~~~-~~~~l~r 80 (364)
T 3p9c_A 5 MGSTAAD--MAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAANPE-APDMVDR 80 (364)
T ss_dssp ----------CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTTCTT-HHHHHHH
T ss_pred CCCCCCC--ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCCCcc-chhhHHH
Confidence 8898888 588889999999999999999999999999999999999964 258999999999994 2333 3448999
Q ss_pred HHHHHhcCCceeeeccCCC----CcceeccccccccccCCCCCChHHHHHHhcCccchhhhhhhHHHHhcCCchhHhhhC
Q 036971 80 VLGLLVSFNILCCSFSTHG----VRLYSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALG 155 (221)
Q Consensus 80 lLr~L~~~gll~~~~~~~~----~~~y~lt~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g 155 (221)
|||+|++.|+|+++..+++ +++|++|+.++.|+.+..+.++++++.+..++.++++|.+|.+++++|+++|+..+|
T Consensus 81 lLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g 160 (364)
T 3p9c_A 81 ILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYG 160 (364)
T ss_dssp HHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHS
T ss_pred HHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcC
Confidence 9999999999998621101 478999999998876542258999988776667789999999999999999999999
Q ss_pred CchhhhhccCchHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 156 MDFYDYLGTDSRFNEVFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 156 ~~~~~~l~~~p~~~~~F~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
.++|+|+.++|+..+.|+++|...+....+.+++.++.|++..+|||||||+|.++..+++++|++
T Consensus 161 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~ 226 (364)
T 3p9c_A 161 MSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTI 226 (364)
T ss_dssp SCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTC
T ss_pred CCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCC
Confidence 999999999999999999999998888888899999768888999999999999999999999974
No 2
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=6.1e-35 Score=254.84 Aligned_cols=219 Identities=46% Similarity=0.783 Sum_probs=180.2
Q ss_pred CCCcccCCC---cCCchhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhc-CCCCCCCHHHHHhhCC-CCCCcchhh
Q 036971 1 MGSSTESKS---KVTNEEEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKA-GPGAELSASEIASQIP-TKNPEGAAK 75 (221)
Q Consensus 1 ~~~~~~~~~---~~~~~~~~~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~-g~~~~~t~~eLA~~~g-~~~~~~~~~ 75 (221)
|||..|++- .++.+..++...+++++.+++.+++|++|++|||||+|++. |+++++|++|||+++| . +|. ++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~-~~~-~~~ 78 (368)
T 3reo_A 1 MGSTGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTT-NPE-APV 78 (368)
T ss_dssp ----------------CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCC-CTT-HHH
T ss_pred CCCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcC-CCc-chh
Confidence 788777742 26667888999999999999999999999999999999996 5446899999999998 5 554 455
Q ss_pred hHHHHHHHHhcCCceeeeccCC-C---CcceeccccccccccCCCCCChHHHHHHhcCccchhhhhhhHHHHhcCCchhH
Q 036971 76 MLDRVLGLLVSFNILCCSFSTH-G---VRLYSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYN 151 (221)
Q Consensus 76 ~l~rlLr~L~~~gll~~~~~~~-~---~~~y~lt~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~ 151 (221)
.|+|+||+|++.|+|+++..++ + +++|++|+.++.|+.+..+.++++++.+..++.+++.|.+|.+++++|+++|+
T Consensus 79 ~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~ 158 (368)
T 3reo_A 79 MLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFN 158 (368)
T ss_dssp HHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHH
T ss_pred hHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHH
Confidence 8999999999999999852100 1 37899999999887554225899998877666678899999999999999999
Q ss_pred hhhCCchhhhhccCchHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 152 KALGMDFYDYLGTDSRFNEVFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 152 ~~~g~~~~~~l~~~p~~~~~F~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
..+|.++|+|+.++|+..+.|+++|...+....+.+++.++.|++..+|||||||+|.++..+++++|++
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~ 228 (368)
T 3reo_A 159 KAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSI 228 (368)
T ss_dssp HHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTC
T ss_pred HHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCC
Confidence 9999999999999999999999999998888888899988767888999999999999999999999974
No 3
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=1.9e-34 Score=249.96 Aligned_cols=210 Identities=20% Similarity=0.324 Sum_probs=181.0
Q ss_pred CCCcccCCCcCCchhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHH
Q 036971 1 MGSSTESKSKVTNEEEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRV 80 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rl 80 (221)
|+||||+ ..++|+.++...+++++.+++.+++|++++++|||+.|++.| +++|++|||+++|+ +|. +++.++|+
T Consensus 1 ~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~-~~~-~~~~l~rl 74 (352)
T 1fp2_A 1 MASSING--RKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSS-KIGNVRRL 74 (352)
T ss_dssp ---------CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGG-GHHHHHHH
T ss_pred CCccccC--CChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCc-CCC-ChHHHHHH
Confidence 8999999 557889999999999999999999999999999999999864 59999999999999 865 55699999
Q ss_pred HHHHhcCCceeeeccCCCCcceeccccccccccCCCCCChHHHHHHhcCccchhhhhhhHHHHh-cCCchhHhhhCCchh
Q 036971 81 LGLLVSFNILCCSFSTHGVRLYSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQIL-EGELSYNKALGMDFY 159 (221)
Q Consensus 81 Lr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~g~~~f~~~~g~~~~ 159 (221)
||+|++.|+|++.. ++++.|++|+.++.|+.++| .++++++.+..++.+++.|.+|+++++ +|+++|+.++|.++|
T Consensus 75 Lr~L~~~gll~~~~--~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~ 151 (352)
T 1fp2_A 75 MRYLAHNGFFEIIT--KEEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFW 151 (352)
T ss_dssp HHHHHHTTSEEEEE--SSSEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHH
T ss_pred HHHHHhCCeEEEec--CCCCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHH
Confidence 99999999999851 02689999999999988776 578999988766567889999999999 889999999999999
Q ss_pred hhhccCchHHHHHHHHHhhhhHHHHHHHHHhc--CCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 160 DYLGTDSRFNEVFNNGMIGQTSFVINKIVESY--KGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 160 ~~l~~~p~~~~~F~~aM~~~~~~~~~~~l~~~--~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
+|+.++|+..+.|+.+|...+....+. ++.| + |++..+|||||||+|.++..+++++|++
T Consensus 152 ~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~ 213 (352)
T 1fp2_A 152 DFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIVDVGGGTGTTAKIICETFPKL 213 (352)
T ss_dssp HHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEEEETCTTSHHHHHHHHHCTTC
T ss_pred HHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccc-cccCceEEEeCCCccHHHHHHHHHCCCC
Confidence 999999999999999999988877676 7888 5 7788999999999999999999999974
No 4
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=5.6e-34 Score=247.49 Aligned_cols=194 Identities=16% Similarity=0.253 Sum_probs=174.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC
Q 036971 17 EVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST 96 (221)
Q Consensus 17 ~~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~ 96 (221)
++...|++++.||+.+++|++|++|||||+|++.+ +|+|++|||+++|+ +++ .++|+||+|+++|+|++....
T Consensus 7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~-~~~----~l~rlLr~L~~~gll~~~~~~ 79 (353)
T 4a6d_A 7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRA-SAH----GTELLLDICVSLKLLKVETRG 79 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCc-CHH----HHHHHHHHHHHCCCEEEeccC
Confidence 67888999999999999999999999999999865 69999999999999 988 999999999999999875321
Q ss_pred CCCcceeccccccc-cccCCCCCChHHHHHHhcCccchhhhhhhHHHHhcCCchhHhhhC---CchhhhhccCchHHHHH
Q 036971 97 HGVRLYSLAPVAKY-YVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALG---MDFYDYLGTDSRFNEVF 172 (221)
Q Consensus 97 ~~~~~y~lt~~s~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g---~~~~~~l~~~p~~~~~F 172 (221)
..+.|++|++++. |..++| .++.+++.+.. +..++.|.+|.+++++|+++|...+| .++|+++.++|+....|
T Consensus 80 -~~~~y~~t~~s~~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f 156 (353)
T 4a6d_A 80 -GKAFYRNTELSSDYLTTVSP-TSQCSMLKYMG-RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQF 156 (353)
T ss_dssp -TEEEEEECHHHHHHHSTTST-TCCHHHHHHHH-HTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHH
T ss_pred -ccceeeCCHHHHHHhhcCCc-hHHHHHHHHhC-HHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHH
Confidence 3568999999985 566666 58888887764 45788999999999999999999887 46899999999999999
Q ss_pred HHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 173 NNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 173 ~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
+++|...+...++.+++.|+ |++.++|||||||+|.++.+++++||++
T Consensus 157 ~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~ 204 (353)
T 4a6d_A 157 MQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGC 204 (353)
T ss_dssp HHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCc
Confidence 99999998888889999999 9999999999999999999999999985
No 5
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=1.5e-33 Score=244.07 Aligned_cols=192 Identities=18% Similarity=0.199 Sum_probs=177.0
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 14 EEEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 14 ~~~~~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
...++...+++++++++.+++|++|+++||||+|.+ +|+|++|||+++|+ +++ .++||||+|++.|+|++.
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~-~~~----~l~rlLr~l~~~g~l~~~ 88 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGT-DAD----ALRRVLRLLAVRDVVRES 88 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCc-CHH----HHHHHHHHHHhCCCEEec
Confidence 345788999999999999999999999999999987 59999999999999 998 999999999999999994
Q ss_pred ccCCCCcceeccccccccccCCCCCChHHHHHHhcCccchhhhhhhHHHHhcCCchhHhhhCCchhhhhccCchHHHHHH
Q 036971 94 FSTHGVRLYSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVFN 173 (221)
Q Consensus 94 ~~~~~~~~y~lt~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g~~~~~~l~~~p~~~~~F~ 173 (221)
++.|++|+.++.|.++++ .++.+++.+..++..++.|.+|++++++|+++|+..+|.++|+|+.++|+..+.|+
T Consensus 89 -----~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~ 162 (348)
T 3lst_A 89 -----DGRFALTDKGAALRSDSP-VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYY 162 (348)
T ss_dssp -----TTEEEECTTTGGGSTTSS-SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHH
T ss_pred -----CCEEecCHHHHHHhcCCC-ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHH
Confidence 889999999999987766 47888888766655789999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 174 NGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 174 ~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
++|...+....+.+++.++ |++..+|||||||+|.++..+++++|++
T Consensus 163 ~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~ 209 (348)
T 3lst_A 163 EGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGL 209 (348)
T ss_dssp HHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTE
T ss_pred HHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCC
Confidence 9999998888888999999 9999999999999999999999999973
No 6
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=2.3e-32 Score=237.31 Aligned_cols=202 Identities=23% Similarity=0.351 Sum_probs=177.1
Q ss_pred chhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceee
Q 036971 13 NEEEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCC 92 (221)
Q Consensus 13 ~~~~~~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~ 92 (221)
.|+.++...+++++++++.+++|++|+++|||+.|++.| +++|++|||+++|+ +|. +++.|+|+||+|++.|+|.+
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~-~~~-~~~~l~rlLr~L~~~gll~~ 80 (358)
T 1zg3_A 5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKL-HPS-KVNILHRFLRLLTHNGFFAK 80 (358)
T ss_dssp SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTC-CTT-THHHHHHHHHHHHHTTSEEE
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCC-CCc-chHHHHHHHHHHhhCCcEEE
Confidence 467788899999999999999999999999999999864 59999999999999 765 55699999999999999998
Q ss_pred ec----c-CCC-CcceeccccccccccCCCCCChHHHHHHhcCccchhhhhhhHHHHhcC--CchhHhhhCCchhhhhcc
Q 036971 93 SF----S-THG-VRLYSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEG--ELSYNKALGMDFYDYLGT 164 (221)
Q Consensus 93 ~~----~-~~~-~~~y~lt~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g--~~~f~~~~g~~~~~~l~~ 164 (221)
.. . .+. ++.|++|+.++.|+++++ .++++++.+..++.+++.|.+|++++++| +++|+.++|.++|+|+.+
T Consensus 81 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~ 159 (358)
T 1zg3_A 81 TIVKGKEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNK 159 (358)
T ss_dssp EEECCSSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTS
T ss_pred ecccccccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhc
Confidence 51 0 000 479999999999988776 58899998876666788999999999998 789999999999999999
Q ss_pred CchHHH--HHHHHHhhhhHHHHHHHHHhc--CCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 165 DSRFNE--VFNNGMIGQTSFVINKIVESY--KGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 165 ~p~~~~--~F~~aM~~~~~~~~~~~l~~~--~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
+|+..+ .|+++|...+.... .+++.| + |++..+|||||||+|.++..+++++|++
T Consensus 160 ~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~ 218 (358)
T 1zg3_A 160 DSESSTLSMFQDAMASDSRMFK-LVLQENKRV-FEGLESLVDVGGGTGGVTKLIHEIFPHL 218 (358)
T ss_dssp GGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHH-HHTCSEEEEETCTTSHHHHHHHHHCTTS
T ss_pred ChhhhhHHHHHHHHhcccHHHH-HHHHhcchh-ccCCCEEEEECCCcCHHHHHHHHHCCCC
Confidence 999999 99999998887766 788888 4 7778899999999999999999999974
No 7
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.98 E-value=4.7e-32 Score=236.53 Aligned_cols=191 Identities=18% Similarity=0.286 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeecc
Q 036971 16 EEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFS 95 (221)
Q Consensus 16 ~~~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~ 95 (221)
.+...++++++.+++.+++|++|+++||||.|++ +|+|++|||+++|+ +++ .++||||+|++.|+|+++
T Consensus 36 ~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~-~~~----~l~rlLr~L~~~g~l~~~-- 104 (369)
T 3gwz_A 36 AAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGA-HEQ----TLRRLLRLLATVGVFDDL-- 104 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSSEEC--
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHhCCCEEEe--
Confidence 4567889999999999999999999999999996 69999999999999 998 999999999999999997
Q ss_pred CCCCcc-eeccccccccccCCCCCChHHHHHHhcCccchhhhhhhHHHHhcCCchhHhhhCCchhhhhccCchHHHHHHH
Q 036971 96 THGVRL-YSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVFNN 174 (221)
Q Consensus 96 ~~~~~~-y~lt~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g~~~~~~l~~~p~~~~~F~~ 174 (221)
+++. |++|++++.|.++++ .++.+++.+..++..++.|.+|.+++++|+++|...+|.++|+|+.++|+..+.|++
T Consensus 105 --~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~ 181 (369)
T 3gwz_A 105 --GHDDLFAQNALSAVLLPDPA-SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNR 181 (369)
T ss_dssp --SSTTEEECCHHHHTTSCCTT-CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred --CCCceEecCHHHHHHhcCCc-hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHH
Confidence 5788 999999999887766 478888887665446789999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 175 GMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 175 aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
+|...+...++.+++.++ |++..+|||||||+|.++..+++++|++
T Consensus 182 ~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~ 227 (369)
T 3gwz_A 182 AMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGL 227 (369)
T ss_dssp HHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTC
T ss_pred HHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCC
Confidence 999988888888999999 9999999999999999999999999974
No 8
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.97 E-value=2.8e-31 Score=228.01 Aligned_cols=186 Identities=22% Similarity=0.312 Sum_probs=170.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC
Q 036971 17 EVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST 96 (221)
Q Consensus 17 ~~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~ 96 (221)
.++..+++++++++.+++|++++++|||+.|.+ +++|++|||+++|+ +++ .++|+||+|++.|+|.+.
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~-~~~----~l~r~Lr~L~~~g~l~~~--- 74 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGS-DAE----RIHRLMRLLVAFEIFQGD--- 74 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCc-CHH----HHHHHHHHHHhCCceEec---
Confidence 567899999999999999999999999999986 59999999999999 988 999999999999999997
Q ss_pred CCCcceeccccccccccCCCCCChHHHHHHhcCccchhhhhhhHHHHhcCCchhHhhhCCchhhhhccCchHHHHHHHHH
Q 036971 97 HGVRLYSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVFNNGM 176 (221)
Q Consensus 97 ~~~~~y~lt~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g~~~~~~l~~~p~~~~~F~~aM 176 (221)
+++.|++|+.++.|. ++| .++.+++.+..++. ++.|.+|++++++++++|+..+|.++|+++.++|+..+.|+++|
T Consensus 75 -~~~~y~~t~~s~~l~-~~~-~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (334)
T 2ip2_A 75 -TRDGYANTPTSHLLR-DVE-GSFRDMVLFYGEEF-HAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM 150 (334)
T ss_dssp -TTTEEEECHHHHTTS-SST-TCSHHHHHHHTTHH-HHHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred -CCCeEecCHHHHHHh-CCC-ccHHHHHHHhcCch-hhHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH
Confidence 578999999999888 666 47889988776543 48899999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 177 IGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
..+....+.+++.++ |++ .+|||||||+|.++..+++++|++
T Consensus 151 -~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~ 192 (334)
T 2ip2_A 151 -KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSA 192 (334)
T ss_dssp -GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTC
T ss_pred -HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCC
Confidence 888877888999998 888 999999999999999999999863
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.97 E-value=4.7e-32 Score=232.94 Aligned_cols=188 Identities=23% Similarity=0.351 Sum_probs=170.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCC
Q 036971 19 YSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHG 98 (221)
Q Consensus 19 ~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~ 98 (221)
...+++++.|++.+++|++|+++||||+|.+ +|+|++|||+++|+ +++ .++||||+|++.|++.++ +
T Consensus 6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~-~~~----~l~rlLr~l~~~gl~~~~----~ 72 (332)
T 3i53_A 6 AHIGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGA-HAD----SLDRLLRHLVAVGLFTRD----G 72 (332)
T ss_dssp CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEC----T
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHhCCcEEec----C
Confidence 4567899999999999999999999999987 69999999999999 998 999999999999999997 6
Q ss_pred CcceeccccccccccCCCCCChHHHHHHhcCccch-hhhhhhHHHHhcCCchhHhhhCCchhhhhccCchHHHHHHHHHh
Q 036971 99 VRLYSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMM-PGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVFNNGMI 177 (221)
Q Consensus 99 ~~~y~lt~~s~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~f~~~~g~~~~~~l~~~p~~~~~F~~aM~ 177 (221)
++.|.+|++++.|..+++ .++.+++.+..+...+ +.|.+|++++++++++|+..+|.++|+|+.++|+..+.|+++|.
T Consensus 73 ~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 151 (332)
T 3i53_A 73 QGVYGLTEFGEQLRDDHA-AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMS 151 (332)
T ss_dssp TSBEEECTTGGGGSTTCT-TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHH
T ss_pred CCeEEcCHhHHHHhcCCc-hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHH
Confidence 899999999999987765 4788888766433345 78999999999999999999998999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 178 GQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 178 ~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
..+....+.+++.++ |++..+|||||||+|.++..+++++|++
T Consensus 152 ~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~ 194 (332)
T 3i53_A 152 HHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDL 194 (332)
T ss_dssp HHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTC
T ss_pred HhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCC
Confidence 988877778888999 9888999999999999999999999974
No 10
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.97 E-value=2.1e-30 Score=226.12 Aligned_cols=208 Identities=32% Similarity=0.586 Sum_probs=161.5
Q ss_pred chhHHHHHHHH--HHHhhhHHHHHHHHHHhhChhhHHHhcC-CCCCCCHHHHHhhCCCC--CCcchhhhHHHHHHHHhcC
Q 036971 13 NEEEEVYSHAM--VLGSAIVLPAVFQAVVNLDVLDIINKAG-PGAELSASEIASQIPTK--NPEGAAKMLDRVLGLLVSF 87 (221)
Q Consensus 13 ~~~~~~~~~l~--~~~~g~~~~~aL~~av~lglfd~L~~~g-~~~~~t~~eLA~~~g~~--~~~~~~~~l~rlLr~L~~~ 87 (221)
++..+++..++ +++.+++.+++|++|+++|||+.|++.| +|+++|++|||+++|++ +|. +++.|+|+||+|++.
T Consensus 17 ~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~-~~~~l~rlLr~L~~~ 95 (372)
T 1fp1_D 17 SEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSD-LPNRLDRMLRLLASY 95 (372)
T ss_dssp --CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTT-HHHHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCc-ChHHHHHHHHHHhhC
Confidence 34556788888 9999999999999999999999999853 11229999999999971 222 345899999999999
Q ss_pred Cceeeecc--CCC--CcceeccccccccccCCCCCChHHHHHHhcCccchhhhhhhHHHHhcC-CchhHhhhCCchhhhh
Q 036971 88 NILCCSFS--THG--VRLYSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEG-ELSYNKALGMDFYDYL 162 (221)
Q Consensus 88 gll~~~~~--~~~--~~~y~lt~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g-~~~f~~~~g~~~~~~l 162 (221)
|+|++... .++ ++.|++|+.++.|+.++++.++++++.+..++.+++.|.+|++++++| +++|+..+|.++|+|+
T Consensus 96 gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~ 175 (372)
T 1fp1_D 96 SVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFM 175 (372)
T ss_dssp TSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CC
T ss_pred CceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHH
Confidence 99998510 001 469999999998887765236888888776656788999999999999 8999999999999999
Q ss_pred ccCchHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 163 GTDSRFNEVFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 163 ~~~p~~~~~F~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
.++|+..+.|+.+|...+...++.+++.|+.|++..+|||||||+|.++..+++++|++
T Consensus 176 ~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~ 234 (372)
T 1fp1_D 176 GKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLI 234 (372)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTC
T ss_pred HhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCC
Confidence 99999999999999998888778889998658888999999999999999999999974
No 11
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.97 E-value=4.1e-30 Score=223.80 Aligned_cols=192 Identities=17% Similarity=0.286 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeec
Q 036971 15 EEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSF 94 (221)
Q Consensus 15 ~~~~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~ 94 (221)
..+....+++++.+++.+++|++++++|||+.|.. +++|++|||+++|+ +++ .+.|+||+|++.|+|.+.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~-~~~----~l~r~Lr~L~~~Gll~~~- 82 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT-HPQ----ALSRLVRHLTVVGVLEGG- 82 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEECC-
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCc-CHH----HHHHHHHHHhhCCCEEEe-
Confidence 45567789999999999999999999999999965 69999999999999 888 999999999999999986
Q ss_pred cCCCCc--ceeccccccccccCCCCCChHHHHHHhcCccch-hhhhhhHHHHhcCCchhHhhhCCchhhhhccCchHHHH
Q 036971 95 STHGVR--LYSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMM-PGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEV 171 (221)
Q Consensus 95 ~~~~~~--~y~lt~~s~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~f~~~~g~~~~~~l~~~p~~~~~ 171 (221)
+++ .|++|++++.|..+++ .++.+++.+..++..+ +.|.+|.+.+++|+++|+..+|.++|+++.++|+....
T Consensus 83 ---~~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (374)
T 1qzz_A 83 ---EKQGRPLRPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADS 158 (374)
T ss_dssp ---CC-CCCCEECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHH
T ss_pred ---CCCCeEEEEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHH
Confidence 466 9999999999988776 5788888776433355 88999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 172 FNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 172 F~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
|+++|...+....+.+++.++ ++...+|||||||+|.++..+++.+|++
T Consensus 159 f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~ 207 (374)
T 1qzz_A 159 FDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHL 207 (374)
T ss_dssp HHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTC
T ss_pred HHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCC
Confidence 999999887766678889998 8888999999999999999999999863
No 12
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.96 E-value=8.6e-30 Score=221.74 Aligned_cols=191 Identities=17% Similarity=0.194 Sum_probs=160.0
Q ss_pred CCchhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCce
Q 036971 11 VTNEEEEVYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNIL 90 (221)
Q Consensus 11 ~~~~~~~~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll 90 (221)
.+.++.++...++++++|++.+++|++++++||||+|++.+ +|+|++|||+++|+ +++ .++||||+|++.|+|
T Consensus 8 ~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~-~~~----~l~rlLr~l~~~g~l 80 (363)
T 3dp7_A 8 EQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGL-TRY----AAQVLLEASLTIGTI 80 (363)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTC-CHH----HHHHHHHHHHHHTSE
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCc-CHH----HHHHHHHHHhhCCCe
Confidence 45667788999999999999999999999999999999854 69999999999999 998 999999999999999
Q ss_pred eeeccCCCCcceeccccccccccCCCCCChHHHHHHhcCccchhhhhhhHHHHhcCCchhHhhhC--CchhhhhccCchH
Q 036971 91 CCSFSTHGVRLYSLAPVAKYYVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALG--MDFYDYLGTDSRF 168 (221)
Q Consensus 91 ~~~~~~~~~~~y~lt~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g--~~~~~~l~~~p~~ 168 (221)
+++ +++|++|+.++.|+.+++ ...++.+. .+..+++|.+|++++++|++++...+| .++|+++.++|+.
T Consensus 81 ~~~-----~~~y~~t~~s~~L~~~~~---~~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~ 151 (363)
T 3dp7_A 81 LLE-----EDRYVLAKAGWFLLNDKM---ARVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQ 151 (363)
T ss_dssp EEE-----TTEEEECHHHHHHHHCHH---HHHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHH
T ss_pred Eec-----CCEEecccchHHhhCCCc---ccchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHH
Confidence 885 789999999998887653 22233333 345789999999999999999888888 6899999999998
Q ss_pred HH----HHHHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 169 NE----VFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 169 ~~----~F~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
.+ .|+++|..... ..+++.+. ..+..+|||||||+|.++..+++++|++
T Consensus 152 ~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~ 204 (363)
T 3dp7_A 152 VQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEV 204 (363)
T ss_dssp HHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCC
Confidence 76 47777765432 23344443 3567899999999999999999999974
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.96 E-value=7.2e-29 Score=215.01 Aligned_cols=189 Identities=20% Similarity=0.315 Sum_probs=170.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCC
Q 036971 18 VYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH 97 (221)
Q Consensus 18 ~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~ 97 (221)
...++++++.+++.+++|.+++++|||+.|.. +++|++|||+++|+ +++ .+.|+||+|++.|+|.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~-~~~----~l~r~L~~L~~~g~~~~~---- 85 (360)
T 1tw3_A 19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT-RPE----ALLRLIRHLVAIGLLEED---- 85 (360)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE----
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCc-CHH----HHHHHHHHHHHCCCEEec----
Confidence 36788999999999999999999999999975 69999999999999 888 999999999999999996
Q ss_pred CCcceeccccccccccCCCCCChHHHHHHhcCcc-chhhhhhhHHHHhcCCchhHhhhCCchhhhhccCchHHHHHHHHH
Q 036971 98 GVRLYSLAPVAKYYVSDQNGVSMRPYMNLSLDKV-MMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVFNNGM 176 (221)
Q Consensus 98 ~~~~y~lt~~s~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~g~~~f~~~~g~~~~~~l~~~p~~~~~F~~aM 176 (221)
.++.|++|+.+..|..+++ .++.+++.+...+. .+..|.+|.+.+++|+++|+..+|.++|+++..+|+....|+.+|
T Consensus 86 ~~g~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~ 164 (360)
T 1tw3_A 86 APGEFVPTEVGELLADDHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLL 164 (360)
T ss_dssp ETTEEEECTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHH
T ss_pred CCCeEEeCHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHH
Confidence 5789999999999988776 57888877664332 568899999999999999998899999999999999999999999
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 177 IGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
...+....+.+++.++ +....+|||||||+|.++..+++.+|++
T Consensus 165 ~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~ 208 (360)
T 1tw3_A 165 ACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHV 208 (360)
T ss_dssp TTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTC
T ss_pred HHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCC
Confidence 9887777778889998 8888999999999999999999999864
No 14
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.95 E-value=9.7e-28 Score=208.16 Aligned_cols=185 Identities=15% Similarity=0.230 Sum_probs=161.8
Q ss_pred CCchhHHHHHHHHHHHh-hhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCc
Q 036971 11 VTNEEEEVYSHAMVLGS-AIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNI 89 (221)
Q Consensus 11 ~~~~~~~~~~~l~~~~~-g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gl 89 (221)
..+|+.++..+++++++ +++.+++|++++++|||+.|++ +++|++|||+++|+ +++ .++|+||+|++.|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~-~~~----~l~rlLr~L~~~gl 93 (359)
T 1x19_A 23 SNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS-VPP----RLEMLLETLRQMRV 93 (359)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTS
T ss_pred CccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCc-ChH----HHHHHHHHHHhCCC
Confidence 34677888999999996 8999999999999999999997 59999999999999 888 99999999999999
Q ss_pred eeeeccCCCCcceeccccc-cccccCCCC--CChHHHHHHhcCccchhhhhhhHHHHhcCCchhHhhhCCchhhhhccCc
Q 036971 90 LCCSFSTHGVRLYSLAPVA-KYYVSDQNG--VSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDS 166 (221)
Q Consensus 90 l~~~~~~~~~~~y~lt~~s-~~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g~~~~~~l~~~p 166 (221)
|+++ ++.|++|+.+ .+|.++++. .++++++.+.. ...++.|.+|++++++|++ |+++.++|
T Consensus 94 l~~~-----~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~l~~g~~----------~~~~~~~p 157 (359)
T 1x19_A 94 INLE-----DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMA-FLADDFYMGLSQAVRGQKN----------FKGQVPYP 157 (359)
T ss_dssp EEEE-----TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHHH-HHHHHTGGGHHHHHTTSCC----------CCCSSCSS
T ss_pred eEee-----CCeEecCHHHHHHhcCCCCCccccHHHHHHHHH-HHHHHHHHHHHHHHhcCCC----------CcccccCc
Confidence 9996 5699999974 467766540 26788887653 4578899999999998764 77888899
Q ss_pred h---HHHHHHHHHhhhhH-HHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 167 R---FNEVFNNGMIGQTS-FVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 167 ~---~~~~F~~aM~~~~~-~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
+ ..+.|..+|...+. ..++.+++.++ +++..+|||||||+|.++..+++++|++
T Consensus 158 ~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~ 215 (359)
T 1x19_A 158 PVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPEL 215 (359)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCC
Confidence 9 99999999998887 77788999999 8888999999999999999999999963
No 15
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.95 E-value=9e-28 Score=205.77 Aligned_cols=180 Identities=14% Similarity=0.148 Sum_probs=161.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCC
Q 036971 20 SHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGV 99 (221)
Q Consensus 20 ~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~ 99 (221)
..+++++.+++.+++|++++++|||+.|++ +++|++|||+++|+ +++ .++|+||+|++.|+|++. +
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~-~~~----~l~r~L~~L~~~g~l~~~-----~ 73 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQT-SER----GMRMLCDYLVIIGFMTKQ-----A 73 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE-----T
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCC-Cch----HHHHHHHHHHhcCCeEec-----C
Confidence 578999999999999999999999999997 59999999999999 888 999999999999999984 7
Q ss_pred cceeccccc-cccccCCCCCChHHHHHHhcCccchhhhhhhHHHHhcCCchhHhhhCCchhhhhccCchHHHHHHHHHhh
Q 036971 100 RLYSLAPVA-KYYVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVFNNGMIG 178 (221)
Q Consensus 100 ~~y~lt~~s-~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g~~~~~~l~~~p~~~~~F~~aM~~ 178 (221)
+.|++|+.+ ..|.++++ .++++++.+..++..++.|.+|++++++|+++|+ + |+++.++|+..+.|.+.|..
T Consensus 74 ~~y~~t~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~ 146 (335)
T 2r3s_A 74 EGYRLTSDSAMFLDRQSK-FYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSP 146 (335)
T ss_dssp TEEEECHHHHHHTCTTST-TCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGG
T ss_pred CEEecCHHHHHHhccCCc-HHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHH
Confidence 999999999 67887766 5788888887554578899999999999988764 3 88888999999999999999
Q ss_pred hhHHHHHHHHHhcCCC--CCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 179 QTSFVINKIVESYKGF--QNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 179 ~~~~~~~~~l~~~~~~--~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
.....+..+++.++ + .+..+|||||||+|.++..+++.+|+.
T Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~ 190 (335)
T 2r3s_A 147 MMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNA 190 (335)
T ss_dssp GGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTC
T ss_pred HHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCC
Confidence 88887888899998 7 788999999999999999999999863
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.94 E-value=2.8e-26 Score=198.17 Aligned_cols=178 Identities=13% Similarity=0.218 Sum_probs=149.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCC
Q 036971 18 VYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH 97 (221)
Q Consensus 18 ~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~ 97 (221)
.+..+++++.+++.+++|++|+++|||++|.+ ++|++|||+++|+ +++ .++|+||+|++.|+|+++
T Consensus 24 ~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~~-~~~----~l~rlLr~L~~~gll~~~---- 89 (352)
T 3mcz_A 24 SVVDLVKLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFGM-VEG----KAAILLHALAALGLLTKE---- 89 (352)
T ss_dssp SHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhCc-ChH----HHHHHHHHHHHCCCeEec----
Confidence 34449999999999999999999999999964 8999999999999 998 999999999999999996
Q ss_pred CCcceeccccccc-cccCCCCCChHHHHHHhcCccchhhhhhhHHHHhcCCch-hHhhhCCchhhhhccCchHHHHHHHH
Q 036971 98 GVRLYSLAPVAKY-YVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQILEGELS-YNKALGMDFYDYLGTDSRFNEVFNNG 175 (221)
Q Consensus 98 ~~~~y~lt~~s~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~-f~~~~g~~~~~~l~~~p~~~~~F~~a 175 (221)
++.|.+|+.++. |.+++| .++++++.+. ...++.|.+|++++++|++. |+.. .++.++|+..+.|..+
T Consensus 90 -~~~y~~t~~s~~~l~~~~~-~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~ 159 (352)
T 3mcz_A 90 -GDAFRNTALTERYLTTTSA-DYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDA 159 (352)
T ss_dssp -TTEEEECHHHHHHHSTTCT-TCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHH
T ss_pred -CCeeecCHHHHhhccCCCh-hhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHH
Confidence 578999999984 556666 5788887664 24688999999999998754 3322 2335789999999999
Q ss_pred HhhhhHHHHHHHHHhcCCCCC-CCeEEEecCCccHHHHHHHhhCCCC
Q 036971 176 MIGQTSFVINKIVESYKGFQN-ITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 176 M~~~~~~~~~~~l~~~~~~~~-~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
|...... +..+++.++ +.+ ..+|||||||+|.++..+++++|++
T Consensus 160 m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~ 204 (352)
T 3mcz_A 160 MVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQL 204 (352)
T ss_dssp HHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTC
T ss_pred HHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCC
Confidence 9874332 336888998 877 8999999999999999999999974
No 17
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.22 E-value=6.1e-07 Score=77.77 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=46.8
Q ss_pred ChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccccccc
Q 036971 42 DVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYY 111 (221)
Q Consensus 42 glfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L 111 (221)
++|..| . ++.|+.+||+.+|+ +++ .++++|+.|++.|+++.. ++ |++|+.+..+
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~-~~~----~v~~~L~~l~~~gll~~~-----~~-~~lt~~~~~~ 100 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEE-PLP----LVVAILESLNELGYVTFE-----DG-VKLTEKGEEL 100 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEECS-----SS-SEECHHHHHH
T ss_pred HHHHHh-c----CCCCHHHHHHHhCC-ChH----HHHHHHHHHhhCCcEEEC-----CC-EEECHHHHHH
Confidence 678888 4 48999999999999 887 999999999999999874 35 9999977643
No 18
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.35 E-value=9.9e-05 Score=48.00 Aligned_cols=55 Identities=13% Similarity=0.276 Sum_probs=46.5
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLA 105 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt 105 (221)
+..|.+.|.+.+ .+++..|||+.+|+ +.. .+.+.|..|...|++... ..+.|+++
T Consensus 12 ~~~IL~~L~~~~--~~~s~~eLA~~lgl-sr~----tv~~~l~~L~~~G~I~~~----~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG--GPVAIFQLVKKCQV-PKK----TLNQVLYRLKKEDRVSSP----SPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHCS-CHH----HHHHHHHHHHHTTSEEEE----ETTEEEEC
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCcEecC----CCceEeeC
Confidence 556888888764 58999999999999 776 999999999999998875 46788764
No 19
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.23 E-value=0.00022 Score=51.15 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=54.6
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhC--CCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccccccC
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQI--PTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYVSD 114 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~--g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~~~ 114 (221)
++..|++.|.+. +++|+.+||+.+ ++ .+. .+.+-|+.|...|+++.. ..+.|++|+.+..+..+
T Consensus 14 ~d~~IL~~L~~~---g~~s~~eLA~~l~~gi-S~~----aVs~rL~~Le~~GLV~~~----~rg~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 14 WDDRILEIIHEE---GNGSPKELEDRDEIRI-SKS----SVSRRLKKLADHDLLQPL----ANGVYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHHH---SCBCHHHHHTSTTCCS-CHH----HHHHHHHHHHHTTSEEEC----STTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHhcCC-CHH----HHHHHHHHHHHCCCEEec----CCceEEECchHHHHHHH
Confidence 356688899876 599999999999 99 776 999999999999999986 45599999999866644
No 20
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.17 E-value=0.00034 Score=48.43 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=51.7
Q ss_pred HHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccccc
Q 036971 33 AVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAK 109 (221)
Q Consensus 33 ~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~ 109 (221)
.++..-.++.|++.| . +++++.|||+.+++ ++. .+.+.|+.|...|++.+. . +.|++++.+.
T Consensus 26 ~~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~i-s~~----tv~~~L~~L~~~Glv~~~----~-g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D----KGRSEEEIMQTLSL-SKK----QLDYHLKVLEAGFCIERV----G-ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H----TTCCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE----T-TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEE----C-CEEEECCCch
Confidence 344455667788888 5 58999999999999 776 899999999999999997 4 6898888654
No 21
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=97.11 E-value=0.00038 Score=54.88 Aligned_cols=59 Identities=8% Similarity=0.027 Sum_probs=37.8
Q ss_pred hhhhccCchHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 159 YDYLGTDSRFNEVFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 159 ~~~l~~~p~~~~~F~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
++|....|.+.+.+...+........+.+.+.++ ...+|+|||||.|.++..+++..|+
T Consensus 4 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~~ 62 (227)
T 1ve3_A 4 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGFE 62 (227)
T ss_dssp HHHHHHCSTTTCTTSHHHHHHHHHHHHHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTCE
T ss_pred hhHHHHhhhhhcccHHHHHHHHHHHHHHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCCE
Confidence 3444444544444444444444444444555544 3679999999999999999988763
No 22
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.08 E-value=0.0006 Score=46.01 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=49.8
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~ 112 (221)
++..|.+.|.++++|.++|+.+||+++|+ +.. .+++.|.-|...|+++.... .++.|...+....+.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv-sr~----tV~~~L~~Le~~G~I~~~g~--~~~~W~i~~~~~~~~ 77 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGT-PKK----EINRVLYSLAKKGKLQKEAG--TPPLWKIAVSTQAWN 77 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEESS--SSCEEEEC-------
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEecCC--CCCeeEEeCcHHhcc
Confidence 46668889998865558999999999999 777 89999999999999998621 357788777665443
No 23
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=97.06 E-value=0.00035 Score=57.94 Aligned_cols=58 Identities=16% Similarity=0.315 Sum_probs=48.8
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccccc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAK 109 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~ 109 (221)
+.|++.|...+ +++|+.|||+++|+ +.. -+.|+|..|+..|++.++ +++.|++++...
T Consensus 33 l~IL~~l~~~~--~~ltl~eia~~lgl-~ks----Tv~RlL~tL~~~G~v~~~----~~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSP--RDLTAAELTRFLDL-PKS----SAHGLLAVMTELDLLARS----ADGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCS--SCEEHHHHHHHHTC-C------CHHHHHHHHHHTTSEEEC----TTSEEEECTHHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEC----CCCcEEehHHHH
Confidence 45888898865 57999999999999 887 999999999999999997 467899998643
No 24
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.92 E-value=0.00053 Score=45.79 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=49.4
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAP 106 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~ 106 (221)
.+..|.+.|..++++.++|+.|||+++|+ +.. .+.+.|.-|...|+++.... .++.|..++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv-s~~----tV~~~L~~L~~~G~I~~~g~--~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT-PKK----EINRVLYSLAKKGKLQKEAG--TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC-CHH----HHHHHHHHHHHHTSEEEECS--SSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEecCC--CCCceEecC
Confidence 35678889999864458999999999999 777 89999999999999988621 356777654
No 25
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.63 E-value=0.0017 Score=52.76 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=48.5
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVA 108 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s 108 (221)
+.|++.|.+.+ +++|+.|||+.+|+ +.. .+.|+|+.|...|+++++ ..+.|++++..
T Consensus 11 l~iL~~l~~~~--~~~~~~ela~~~gl-~~s----tv~r~l~~L~~~G~v~~~----~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNP--GDVSVSEIAEKFNM-SVS----NAYKYMVVLEEKGFVLRK----KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEEC----TTSCEEECTHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCcEEEC----CCCcEEECHHH
Confidence 45677887753 47999999999999 776 999999999999999996 47889998754
No 26
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.59 E-value=0.0031 Score=43.81 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=42.4
Q ss_pred HHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 34 VFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 34 aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+|.--.++.|+..|.+ ++.++.|||+.+|+ ++. .+.+.|+.|...|++...
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i-s~~----tvs~~L~~L~~~Glv~~~ 69 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVE----GEFSVGELEQQIGI-GQP----TLSQQLGVLRESGIVETR 69 (102)
T ss_dssp HHCSHHHHHHHHHHHT----CCBCHHHHHHHHTC-CTT----HHHHHHHHHHHTTSEEEE
T ss_pred HcCCHHHHHHHHHHHh----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCeEEE
Confidence 3344455667777766 58999999999999 887 999999999999999986
No 27
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.52 E-value=0.0015 Score=52.94 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=49.8
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccccccc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYY 111 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L 111 (221)
+.|++.|.+.+ +++|+.|||+.+|+ +.. -+.|+|+.|...|++.++. +.+.|++++....|
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~gl-~~s----tv~r~l~~L~~~G~v~~~~---~~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVGL-PRS----TVQRIINALEEEFLVEALG---PAGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTTS-CHH----HHHHHHHHHHTTTSEEECG---GGCEEEECSHHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEeC---CCCeEEECHHHHHH
Confidence 45677887754 47999999999999 776 8999999999999999962 24789998865444
No 28
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.47 E-value=0.0021 Score=45.44 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=45.4
Q ss_pred HHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccc
Q 036971 38 VVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVA 108 (221)
Q Consensus 38 av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s 108 (221)
-.++.|+..|.. +++++.+||+.+|+ ++. .+.+.|+.|...|++..... +....|.+|+.+
T Consensus 21 ~~r~~IL~~L~~----~~~~~~ela~~l~i-s~~----tv~~~l~~L~~~gli~~~~~-gr~~~y~l~~~~ 81 (114)
T 2oqg_A 21 ETRWEILTELGR----ADQSASSLATRLPV-SRQ----AIAKHLNALQACGLVESVKV-GREIRYRALGAE 81 (114)
T ss_dssp HHHHHHHHHHHH----SCBCHHHHHHHSSS-CHH----HHHHHHHHHHHTTSEEEEEE-TTEEEEEECSHH
T ss_pred hHHHHHHHHHHc----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCeeEEec-CCEEEEEechHH
Confidence 345667777844 58999999999999 777 89999999999999997620 011236666543
No 29
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=96.45 E-value=0.0032 Score=45.79 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=38.1
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccc
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPV 107 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~ 107 (221)
++.|.++||+.+++ ++. .++++|+.|...|++.... |..|.|.++.-
T Consensus 25 ~~~s~~ela~~~~i-~~~----~v~~il~~L~~~Glv~~~~--g~~ggy~L~~~ 71 (129)
T 2y75_A 25 GPTSLKSIAQTNNL-SEH----YLEQLVSPLRNAGLVKSIR--GAYGGYVLGSE 71 (129)
T ss_dssp CCBCHHHHHHHTTS-CHH----HHHHHHHHHHHTTSEEEC------CCEEESSC
T ss_pred CcCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCceEecC--CCCCceEeCCC
Confidence 58999999999999 888 9999999999999998752 12467777653
No 30
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.44 E-value=0.00063 Score=55.89 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=48.9
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKY 110 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~ 110 (221)
+.|++.|...+ +++|+.|||+++|+ +.. -+.|+|..|+..|++.++. +.+.|++++....
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lgl-~ks----T~~RlL~tL~~~G~v~~~~---~~~~Y~lG~~~~~ 68 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSGM-NKA----TVYRLMSELQEAGFVEQVE---GARSYRLGPQVLR 68 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHCS-CHH----HHHHHHHHHHHTTSEEECS---SSSEEEECTTHHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEcC---CCCcEEcCHHHHH
Confidence 44677777643 58999999999999 776 8999999999999999972 2389999986543
No 31
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.34 E-value=0.0027 Score=45.93 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=45.6
Q ss_pred HHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 32 PAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 32 ~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..+|.--.++.|+..|... ++.++.+||+.+|+ ++. .+.+.|+.|...|++...
T Consensus 36 ~~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~i-s~s----tvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD---EELCVCDIANILGV-TIA----NASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEC
T ss_pred HHHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCeEEE
Confidence 3455555677899999865 58999999999999 777 999999999999999975
No 32
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.28 E-value=0.0021 Score=44.38 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=43.3
Q ss_pred HHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 34 VFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 34 aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+|.--.++.|+..|.+ ++.++.|||+.+|+ ++. .+.+.|+.|...|++...
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i-s~~----tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 19 AMANERRLQILCMLHN----QELSVGELCAKLQL-SQS----ALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp HHCSHHHHHHHHHTTT----SCEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HcCCHHHHHHHHHHhc----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCeEEE
Confidence 4444556777888877 48999999999999 777 999999999999999986
No 33
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=96.20 E-value=0.006 Score=48.61 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=24.3
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 187 IVESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 187 ~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
+....+.+....+|||||||.|.++..+++...
T Consensus 32 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~ 64 (240)
T 3dli_A 32 LRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI 64 (240)
T ss_dssp HGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTC
T ss_pred HHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCC
Confidence 333344244568999999999999999887643
No 34
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.17 E-value=0.0031 Score=42.22 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=49.6
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKY 110 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~ 110 (221)
.+-.|.++|... ++.|+.+||+.+|+ .+. +.+++.|..|...|+|+.... ....|.+|+.++.
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lgi-t~~---~aVr~hL~~Le~eGlV~~~~~--gRP~w~LT~~g~~ 74 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIGL-TKA---RDINAVLIDMERQGDVYRQGT--TPPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCG-GGH---HHHHHHHHHHHHTTSEEEECS--SSCEEEECHHHHT
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcCC-CcH---HHHHHHHHHHHHCCCEEecCC--CCCCeEeCHhHHh
Confidence 455677889998 59999999999999 541 279999999999999986521 2238999987753
No 35
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.15 E-value=0.0029 Score=43.39 Aligned_cols=49 Identities=12% Similarity=0.090 Sum_probs=41.9
Q ss_pred HHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 37 AVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 37 ~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.-.++.|+..|... ++.|..|||+.+|+ ++. .+.+.|+.|...|++...
T Consensus 23 ~~~~~~il~~l~~~---~~~s~~ela~~l~i-s~~----tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGS---PGTSAGELTRITGL-SAS----ATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTC---CSEEHHHHHHHHCC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred ChHHHHHHHHHHhC---CCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEE
Confidence 34566677788764 48999999999999 777 999999999999999986
No 36
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=96.13 E-value=0.0095 Score=47.07 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=26.9
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
.+++..+......+|||||||.|.++..+++.+|+
T Consensus 34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~ 68 (234)
T 3dtn_A 34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE 68 (234)
T ss_dssp HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTT
T ss_pred HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCC
Confidence 34445442234589999999999999999999874
No 37
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.10 E-value=0.004 Score=44.63 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=49.1
Q ss_pred HHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccc
Q 036971 33 AVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAP 106 (221)
Q Consensus 33 ~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~ 106 (221)
.+|.--.++.|+..|.+ +++++.+||+.+|+ ++. .+.+.|+.|...|++..... +..-.|++++
T Consensus 13 ~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~i-s~~----tvs~hL~~L~~~GlV~~~~~-gr~~~y~l~~ 76 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR----GPATVSELAKPFDM-ALP----SFMKHIHFLEDSGWIRTHKQ-GRVRTCAIEK 76 (118)
T ss_dssp HHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCS-CHH----HHHHHHHHHHHTTSEEEEEE-TTEEEEEECS
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCc-CHH----HHHHHHHHHHHCCCeEEEec-CCEEEEEECH
Confidence 44555567778888885 58999999999999 776 99999999999999987621 1122466655
No 38
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.08 E-value=0.0033 Score=44.11 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=40.0
Q ss_pred HHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 38 VVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 38 av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
-.++.|+..|.. ++.++.+||+.+|+ ++. .+.+.|+.|...|++...
T Consensus 26 ~~r~~IL~~L~~----~~~~~~ela~~l~i-s~s----tvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 26 YNRIRIMELLSV----SEASVGHISHQLNL-SQS----NVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp HHHHHHHHHHHH----CCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHh----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCeEEE
Confidence 345566667775 58999999999999 776 999999999999999986
No 39
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.08 E-value=0.002 Score=52.84 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=46.5
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccccc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAK 109 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~ 109 (221)
+.|++.|...+ +++++.|||+.+|+ +.. -+.|+|+.|...|++.++ ..+.|++++...
T Consensus 26 l~iL~~l~~~~--~~~~~~eia~~~gl-~ks----tv~r~l~tL~~~G~v~~~----~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAH--PTRSLKELVEGTKL-PKT----TVVRLVATMCARSVLTSR----ADGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTB--SSBCHHHHHHHHCC-CHH----HHHHHHHHHHHTTSEEEC----TTSCEEECHHHH
T ss_pred HHHHHHHhhCC--CCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEC----CCCeEEecHHHH
Confidence 34566665432 58999999999999 776 899999999999999997 344899987543
No 40
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=96.07 E-value=0.0022 Score=52.43 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=49.5
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccccc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYV 112 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~ 112 (221)
+.|.+.|...+ +++|+.|||+.+|+ +.. -+.|+|..|...|+++++ ++.|++++....|.
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~gl-~~s----tv~r~l~~L~~~G~v~~~-----~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAGL-SRP----AVRRILLTLQKLGYVAGS-----GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE-----TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEeC-----CCEEEEcHHHHHHH
Confidence 34566776543 58999999999999 776 899999999999999996 58999998765554
No 41
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=96.06 E-value=0.0055 Score=45.65 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=39.4
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccc
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAP 106 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~ 106 (221)
+++|.++||+.+++ ++. .++++|..|...|++.-.+ |..|.|.++.
T Consensus 27 ~~~s~~~IA~~~~i-~~~----~l~kil~~L~~aGlv~s~r--G~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNL-SDL----YLEQLVGPLRNAGLIRSVR--GAKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEECS--SSSSEEEESS
T ss_pred CCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCEEEecC--CCCCCeeecC
Confidence 58999999999999 888 9999999999999998753 2456788764
No 42
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.05 E-value=0.012 Score=43.18 Aligned_cols=78 Identities=13% Similarity=0.012 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhC-CCCCCcchhhhHHHHHHHHhcCCceeeeccC
Q 036971 18 VYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQI-PTKNPEGAAKMLDRVLGLLVSFNILCCSFST 96 (221)
Q Consensus 18 ~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~ 96 (221)
+...+++++.+-|...+|.. |.. ++.+..||++.+ |+ ++. .|.+.|+.|...||+++....
T Consensus 15 pi~~~l~~lg~kW~l~IL~~---------L~~----g~~rf~eL~~~l~gI-s~~----~Ls~~L~~Le~~GLV~R~~~~ 76 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFYH---------MID----GKKRFNEFRRICPSI-TQR----MLTLQLRELEADGIVHREVYH 76 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHHH---------HTT----SCBCHHHHHHHCTTS-CHH----HHHHHHHHHHHTTSEEEEEEC
T ss_pred cHHHHHHHHcCcCHHHHHHH---------Hhc----CCcCHHHHHHHhccc-CHH----HHHHHHHHHHHCCCEEEEecC
Confidence 45666677767776665543 333 599999999999 99 887 999999999999999986321
Q ss_pred CC--Ccceecccccccccc
Q 036971 97 HG--VRLYSLAPVAKYYVS 113 (221)
Q Consensus 97 ~~--~~~y~lt~~s~~L~~ 113 (221)
.+ .-.|++|+.++.|..
T Consensus 77 ~d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 77 QVPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp SSSCEEEEEECTTGGGGHH
T ss_pred CCCCeEEEEECHhHHHHHH
Confidence 01 235999999887763
No 43
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=96.05 E-value=0.016 Score=48.15 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=32.0
Q ss_pred HHHHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 171 VFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 171 ~F~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.|.. +..........+++.++.+....+|||||||.|.++..+++.+
T Consensus 93 ~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~ 139 (312)
T 3vc1_A 93 VIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF 139 (312)
T ss_dssp HHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred HHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc
Confidence 3443 3433333445566666535567899999999999999998863
No 44
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.02 E-value=0.0045 Score=41.25 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=38.3
Q ss_pred hhhHHHhc-----CCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 43 VLDIINKA-----GPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 43 lfd~L~~~-----g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
|++.|.+. | +|.|+.|||+++|+ .+. .+++-|..|...|++..+
T Consensus 9 IL~~I~~~i~~~~g--~~psv~EIa~~lgv-S~~----TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 9 IISIVQERQNMDDG--APVKTRDIADAAGL-SIY----QVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHTT--SCEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhhccC--CCcCHHHHHHHHCC-CHH----HHHHHHHHHHHCCcEEec
Confidence 55666665 5 69999999999999 776 899999999999999997
No 45
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.02 E-value=0.0036 Score=44.97 Aligned_cols=65 Identities=11% Similarity=0.140 Sum_probs=48.4
Q ss_pred HHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccc
Q 036971 33 AVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPV 107 (221)
Q Consensus 33 ~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~ 107 (221)
.+|.--.++.|+..|.. ++.++.+||+.+|+ ++. .+.+.|+.|...|++..... +..-.|++++.
T Consensus 16 ~aL~~~~r~~IL~~L~~----~~~~~~eLa~~lgi-s~s----tvs~~L~~L~~~GlV~~~~~-gr~~~y~l~~~ 80 (118)
T 2jsc_A 16 RALADPTRCRILVALLD----GVCYPGQLAAHLGL-TRS----NVSNHLSCLRGCGLVVATYE-GRQVRYALADS 80 (118)
T ss_dssp HHHSSHHHHHHHHHHHT----TCCSTTTHHHHHSS-CHH----HHHHHHHHHTTTTSEEEEEC-SSSEEEEESSH
T ss_pred HHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCceEEEEE-CCEEEEEEChH
Confidence 34444456677778875 58999999999999 777 99999999999999987621 11224666653
No 46
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=96.01 E-value=0.01 Score=46.01 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=28.4
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
.++..++ .....+|+|||||.|.++..+++.+|+
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~ 64 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPN 64 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTT
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCC
Confidence 4556666 666789999999999999999998874
No 47
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.95 E-value=0.0072 Score=45.93 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccc
Q 036971 31 LPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAP 106 (221)
Q Consensus 31 ~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~ 106 (221)
.-.||++.+.+.. ...+++.|.++||+.+++ ++. .++++|..|...|++.-.+ |..|.|.++.
T Consensus 26 ~~yAlr~L~~LA~------~~~~~~~s~~eIA~~~~i-~~~----~l~kil~~L~~aGlv~s~r--G~~GGy~Lar 88 (159)
T 3lwf_A 26 GRYGLTITLELAK------RIGDGPISLRSIAQDKNL-SEH----YLEQLIGPLRNAGIVKSIR--GAHGGYVLNG 88 (159)
T ss_dssp HHHHHHHHHHHHH------TTTSCCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEC--STTCEEEECS
T ss_pred HHHHHHHHHHHHh------cCCCCCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCeEEEec--CCCCceEecC
Confidence 3346666655432 211258999999999999 888 9999999999999999764 2456787764
No 48
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.88 E-value=0.017 Score=40.52 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=42.5
Q ss_pred CCCCHHHHHhhC-CCCCCcchhhhHHHHHHHHhcCCceeeeccCCC--Ccceeccccccccc
Q 036971 54 AELSASEIASQI-PTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHG--VRLYSLAPVAKYYV 112 (221)
Q Consensus 54 ~~~t~~eLA~~~-g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~--~~~y~lt~~s~~L~ 112 (221)
++++..||++.+ ++ ++. .+.+.|+.|...|++++.....+ .-.|.+|+.++.+.
T Consensus 26 ~~~~~~eLa~~l~~i-s~~----tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 26 GKKRTSELKRLMPNI-TQK----MLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp CCBCHHHHHHHCTTS-CHH----HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred CCCCHHHHHHHhcCC-CHH----HHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 589999999999 99 877 99999999999999998632101 12488888776544
No 49
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.85 E-value=0.0053 Score=41.35 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=47.2
Q ss_pred HHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccc
Q 036971 38 VVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVA 108 (221)
Q Consensus 38 av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s 108 (221)
.+...|.+.|.+. ++|+.|||+++|+ ... .+++.|..|...|++..... .+-.|+++...
T Consensus 17 ~~~~~IL~lL~~~----g~sa~eLAk~Lgi-Sk~----aVr~~L~~Le~eG~I~~~~~--~PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGIE----GATAAQLTRQLNM-EKR----EVNKALYDLQRSAMVYSSDD--IPPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSSS----TEEHHHHHHHSSS-CHH----HHHHHHHHHHHHTSSEECSS--SSCEEESCC--
T ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEeCCC--CCCcceeccCc
Confidence 3455677788874 4999999999999 877 99999999999999998632 35678777643
No 50
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=95.84 E-value=0.0072 Score=48.16 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 183 VINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 183 ~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
....+++.++ .....+|+|||||.|.++..+++..|
T Consensus 79 ~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~ 114 (235)
T 1jg1_A 79 MVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK 114 (235)
T ss_dssp HHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC
Confidence 3345566666 66678999999999999999988764
No 51
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.84 E-value=0.0086 Score=39.94 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=39.4
Q ss_pred hhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 43 VLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 43 lfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
|.+.|.+. +.++++|||+.+++ ++. -++|-|..|...|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLa~~l~V-S~~----TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR---GRMEAAQISQTLNT-PQP----MINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS---CSBCHHHHHHHTTC-CHH----HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEe
Confidence 66788887 59999999999999 887 999999999999999987
No 52
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.84 E-value=0.0055 Score=45.00 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=46.1
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccccc
Q 036971 46 IINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYV 112 (221)
Q Consensus 46 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~ 112 (221)
.+... ++++..+||+.+++ ++. .+.+.++.|...|++... ....|.+|+.+..+.
T Consensus 16 l~~~~---~~~~~~ela~~l~v-s~~----tvs~~l~~Le~~Glv~r~----~~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 16 LIEEK---GYARVSDIAEALAV-HPS----SVTKMVQKLDKDEYLIYE----KYRGLVLTSKGKKIG 70 (142)
T ss_dssp HHHHH---SSCCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEE----TTTEEEECHHHHHHH
T ss_pred HHhhc---CCCCHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEEEe----eCceEEEchhHHHHH
Confidence 44444 48999999999999 877 999999999999999987 467899998876554
No 53
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=95.82 E-value=0.0077 Score=46.71 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 184 INKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 184 ~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+++.++ .... +|||||||.|.++..+++.
T Consensus 33 ~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~ 64 (219)
T 3dlc_A 33 AENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ 64 (219)
T ss_dssp HHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH
T ss_pred HHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc
Confidence 345566666 5544 9999999999999999887
No 54
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=95.80 E-value=0.0063 Score=40.51 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=39.2
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..|++.|.+. +++|..|||+.+|+ ++. .+++.|..|...|++...
T Consensus 3 ~~Il~~L~~~---~~~s~~eLa~~lgv-s~~----tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRH---NGGKTAEIAEALAV-TDY----QARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHS---CCCCHHHHHHHHTS-CHH----HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEe
Confidence 3477788776 48999999999999 777 899999999999999964
No 55
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.79 E-value=0.0024 Score=52.45 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=47.9
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKY 110 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~ 110 (221)
+.|++.|...+ +++|+.|||+.+|+ +.. -+.|+|..|...|+++++ ++.|++++....
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~gl-~~s----tv~r~l~tL~~~G~v~~~-----~~~Y~Lg~~~~~ 81 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATDL-TRA----TARRFLLTLVELGYVATD-----GSAFWLTPRVLE 81 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHTC-CHH----HHHHHHHHHHHHTSEEES-----SSEEEECGGGGG
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEec-----CCEEEEcHHHHH
Confidence 34667776533 58999999999999 776 899999999999999995 689999886543
No 56
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.78 E-value=0.0022 Score=45.37 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=38.7
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.++.|+..|.. +++++.|||+.+|+ ++. .+.+.|+.|...|++...
T Consensus 26 ~r~~IL~~L~~----~~~s~~eLa~~lgi-s~s----tvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 26 RRLQILDLLAQ----GERAVEAIATATGM-NLT----TASANLQALKSGGLVEAR 71 (108)
T ss_dssp TTHHHHHHHTT----CCEEHHHHHHHHTC-CHH----HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc----CCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCeEEE
Confidence 34455556765 58999999999999 877 999999999999999876
No 57
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=95.77 E-value=0.02 Score=46.71 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=25.0
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
.+++.+ .+...+|+|||||+|.++..+++.++
T Consensus 62 ~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~ 93 (261)
T 4gek_A 62 MLAERF--VQPGTQVYDLGCSLGAATLSVRRNIH 93 (261)
T ss_dssp HHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCC
T ss_pred HHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcC
Confidence 344444 34568999999999999999998864
No 58
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=95.75 E-value=0.017 Score=45.38 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=23.5
Q ss_pred CCCCeEEEecCCccHHHHHHHhhCCCC
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
....+|+|||||.|.++..++...|+.
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a 74 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKI 74 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCC
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCC
Confidence 346899999999999999999888863
No 59
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=95.75 E-value=0.011 Score=48.78 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=28.4
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..+++.++ .....+|||||||.|.++..+++.+|
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~ 95 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD 95 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC
Confidence 45667777 67778999999999999999998765
No 60
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.75 E-value=0.0057 Score=42.36 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=44.0
Q ss_pred CCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccccccccc
Q 036971 56 LSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYVS 113 (221)
Q Consensus 56 ~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~~ 113 (221)
++..+||..+++ +++ .+++.++.|...|+++.. .+.|.+|+.+..+..
T Consensus 21 ~~~t~La~~~~l-s~~----~~~~~l~~L~~~GLI~~~-----~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 21 SPKTRIMYGANL-SYA----LTGRYIKMLMDLEIIRQE-----GKQYMLTKKGEELLE 68 (95)
T ss_dssp BCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHHH
T ss_pred CCHHHHHHHhCc-CHH----HHHHHHHHHHHCCCeEEE-----CCeeEEChhHHHHHH
Confidence 999999999999 988 999999999999999996 567999999987664
No 61
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.75 E-value=0.0083 Score=40.89 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=39.5
Q ss_pred hhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 43 VLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 43 lfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
|.+.|.+. +.+++.|||+.+++ .+. -++|.|+.|...|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLA~~l~V-S~~----TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ---GRMEAKQLSARLQT-PQP----LIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS---CSEEHHHHHHHTTC-CHH----HHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEE
Confidence 66788887 59999999999999 887 999999999999999997
No 62
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=95.74 E-value=0.0038 Score=50.38 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..+++.++ .....+|||||||.|.++..+++..+
T Consensus 27 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~ 60 (260)
T 1vl5_A 27 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK 60 (260)
T ss_dssp HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS
T ss_pred HHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC
Confidence 34555666 55678999999999999999988765
No 63
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=95.73 E-value=0.016 Score=46.85 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 184 INKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 184 ~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
...+++.++ .....+|||||||.|.++..+++.+
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~ 83 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR 83 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc
Confidence 345667777 6677899999999999999998865
No 64
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.73 E-value=0.0062 Score=41.65 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=51.2
Q ss_pred HHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeecc--CCCCcceecccccc
Q 036971 33 AVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFS--THGVRLYSLAPVAK 109 (221)
Q Consensus 33 ~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~--~~~~~~y~lt~~s~ 109 (221)
.++..-.++.|+..|... +++|..+||+.+++ ++. .+.+.|+.|...|++..... ++....|.+|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~i-s~~----tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL-TPG----NLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 455556677788888755 48999999999999 777 99999999999999996421 00122466666554
No 65
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=95.71 E-value=0.0091 Score=47.68 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=26.4
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+++.++ .....+|||||||.|.++..+++..
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~ 115 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL 115 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh
Confidence 45666666 5567899999999999999887753
No 66
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=95.69 E-value=0.0074 Score=47.55 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCeEEEecCCccHHHHHHHhhCCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
..+|||||||.|.++..+++.+|+
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~ 62 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPD 62 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTT
T ss_pred CceEEEEecCCCHHHHHHHHHCCC
Confidence 568999999999999999999986
No 67
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=95.67 E-value=0.0085 Score=49.26 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=27.0
Q ss_pred HHHHHHhc----CCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 184 INKIVESY----KGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 184 ~~~~l~~~----~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
...+++.+ + +....+|||||||.|.++..+++.+
T Consensus 67 ~~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~ 104 (297)
T 2o57_A 67 DEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF 104 (297)
T ss_dssp HHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred HHHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 34455566 4 6667899999999999999998874
No 68
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.66 E-value=0.0058 Score=45.98 Aligned_cols=67 Identities=15% Similarity=0.268 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccc
Q 036971 31 LPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPV 107 (221)
Q Consensus 31 ~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~ 107 (221)
...+|.--.++.|+..|.. +++++.+||+.+|+ .+. .+.+.|+.|...|++..... +..-.|++|+.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgl-s~s----tvs~hL~~L~~aGlV~~~~~-Gr~~~y~lt~~ 117 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPA-SRS----AISQHLRVLTEAGLVTPRKD-GRFRYYRLDPQ 117 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSS-CHH----HHHHHHHHHHHTTSEEEEEE-TTEEEEEECHH
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEEec-CCEEEEEEChH
Confidence 4567777788999999985 58999999999999 776 99999999999999998620 11224666553
No 69
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=95.66 E-value=0.026 Score=41.09 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=46.2
Q ss_pred HHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCC--CCcceeccccccccc
Q 036971 38 VVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH--GVRLYSLAPVAKYYV 112 (221)
Q Consensus 38 av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~--~~~~y~lt~~s~~L~ 112 (221)
..++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++++..... ..-.+.+|+.++.+.
T Consensus 37 ~~~~~vL~~l~~~---~~~t~~eLa~~l~~-~~~----tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 37 PPDVHVLKLIDEQ---RGLNLQDLGRQMCR-DKA----LITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp HHHHHHHHHHHHT---TTCCHHHHHHHHC----C----HHHHHHHHHHHTTSEEC----------CCEECHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCcCHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence 4566688888887 48999999999999 887 9999999999999999862110 011356666665444
No 70
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=95.65 E-value=0.0067 Score=49.67 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=24.7
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhh-CCC
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQ-IPS 220 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~ 220 (221)
.+++.++ +....+|+|||||.|.++..+++. +|.
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~ 135 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGK 135 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTS
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCC
Confidence 4555566 667789999999999999999987 553
No 71
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=95.53 E-value=0.015 Score=46.56 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=26.0
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
.+.+.++ .....+|||||||.|.++..+++..+
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~ 67 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGA 67 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTC
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCC
Confidence 3455555 44568999999999999999998866
No 72
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=95.52 E-value=0.017 Score=46.09 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=26.8
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+++.++ .....+|||||||.|.++..+++.+
T Consensus 26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~ 58 (256)
T 1nkv_A 26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH 58 (256)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc
Confidence 34555666 6667899999999999999998875
No 73
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=95.49 E-value=0.0065 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCCeEEEecCCccHHHHHHHhhCCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
...+|||||||.|.++..+++.+|+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~ 70 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPD 70 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTT
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCC
Confidence 4568999999999999999999986
No 74
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=95.46 E-value=0.019 Score=45.93 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=26.9
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
.+++.+.......+|||||||.|.++..+++.+|
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~ 69 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVK 69 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC
Confidence 3444553355667999999999999999999887
No 75
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=95.45 E-value=0.0084 Score=48.17 Aligned_cols=36 Identities=19% Similarity=0.013 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh-CCC
Q 036971 184 INKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ-IPS 220 (221)
Q Consensus 184 ~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~ 220 (221)
+..++...+ .....+|+|||||+|.++..+++. .|.
T Consensus 82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~ 118 (255)
T 3mb5_A 82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPE 118 (255)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTT
T ss_pred HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCC
Confidence 344566666 667789999999999999999988 553
No 76
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=95.44 E-value=0.019 Score=46.46 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=26.7
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.+++.++ .....+|||||||.|.++..+++.+
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~ 65 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQV 65 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 4556666 6667899999999999999999886
No 77
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=95.44 E-value=0.011 Score=46.36 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=22.2
Q ss_pred CCeEEEecCCccHHHHHHHhhCCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
..+|||||||.|.++..+++.+|+
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~ 65 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPD 65 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTT
T ss_pred CCeEEEEccCcCHHHHHHHHHCCC
Confidence 578999999999999999999986
No 78
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.43 E-value=0.0076 Score=49.05 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=51.3
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~ 112 (221)
++.|...|... +++|..|||+.+++ ++. .+.|.|+.|...|++++.. ....|.+|+.+..+.
T Consensus 154 ~~~IL~~L~~~---~~~s~~eLA~~lgl-sks----Tv~r~L~~Le~~GlV~r~~---r~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 154 EMKLLNVLYET---KGTGITELAKMLDK-SEK----TLINKIAELKKFGILTQKG---KDRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHH---TCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEET---TTTEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEeC---CccEEEECHHHHHHH
Confidence 44566677665 48999999999999 877 9999999999999999862 456899999888664
No 79
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=95.41 E-value=0.013 Score=46.43 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=25.2
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
.+.+.++ .....+|+|||||.|.++..+++..+
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~ 66 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA 66 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC
Confidence 3455555 44568999999999999999987643
No 80
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.40 E-value=0.0084 Score=39.93 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=39.7
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhC-----CCCCCcchhhhHHHHHHHHhcCCceeeec
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQI-----PTKNPEGAAKMLDRVLGLLVSFNILCCSF 94 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~~l~rlLr~L~~~gll~~~~ 94 (221)
+..|++.|.+.+ +++.|++||++.+ ++ +.. -+.|.|+.|+..|++.+..
T Consensus 19 r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~i-s~~----TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 19 RLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEI-GLA----TVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCC-CHH----HHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC-CHh----hHHHHHHHHHHCCCeEEEe
Confidence 345778887641 0389999999999 78 665 8999999999999999873
No 81
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=95.38 E-value=0.017 Score=47.23 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..+++.++ .....+|||||||.|.++..+++.++
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~ 87 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD 87 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC
Confidence 34566666 66678999999999999999986654
No 82
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=95.38 E-value=0.016 Score=44.97 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=23.2
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 187 IVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 187 ~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+++.+.......+|+|||||.|.++..+++.
T Consensus 37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~ 67 (218)
T 3ou2_A 37 ALERLRAGNIRGDVLELASGTGYWTRHLSGL 67 (218)
T ss_dssp HHHHHTTTTSCSEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEECCCCCHHHHHHHhc
Confidence 3334432445579999999999999999876
No 83
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.30 E-value=0.0097 Score=42.23 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=53.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCC--HHHHHhhC-CCCCCcchhhhHHHHHHHHhcCCceeeeccC
Q 036971 20 SHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELS--ASEIASQI-PTKNPEGAAKMLDRVLGLLVSFNILCCSFST 96 (221)
Q Consensus 20 ~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t--~~eLA~~~-g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~ 96 (221)
..+++++.+.|....| ..|.. ++.+ +.||++.+ |+ .+. .+.+.|+.|...|++++...
T Consensus 18 ~~~l~~l~~~wrl~IL---------~~L~~----g~~~~~~~eL~~~l~gi-s~~----~ls~~L~~Le~~GlV~r~~~- 78 (111)
T 3df8_A 18 ESVLHLLGKKYTMLII---------SVLGN----GSTRQNFNDIRSSIPGI-SST----ILSRRIKDLIDSGLVERRSG- 78 (111)
T ss_dssp SSTHHHHHSTTHHHHH---------HHHTS----SSSCBCHHHHHHTSTTC-CHH----HHHHHHHHHHHTTSEEEEES-
T ss_pred HHHHHHHcCccHHHHH---------HHHhc----CCCCCCHHHHHHHccCC-CHH----HHHHHHHHHHHCCCEEEeec-
Confidence 3345555555544444 34553 5777 99999999 99 777 99999999999999998621
Q ss_pred CCCcceeccccccccc
Q 036971 97 HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 97 ~~~~~y~lt~~s~~L~ 112 (221)
....|++|+.++.+.
T Consensus 79 -r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 79 -QITTYALTEKGMNVR 93 (111)
T ss_dssp -SSEEEEECHHHHHHH
T ss_pred -CcEEEEECccHHHHH
Confidence 245688888877655
No 84
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=95.25 E-value=0.012 Score=45.84 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=26.7
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.+++.++ .....+|||||||.|.++..+++..
T Consensus 28 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~ 59 (219)
T 3dh0_A 28 KVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMV 59 (219)
T ss_dssp HHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHH
T ss_pred HHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHh
Confidence 4556666 6667899999999999999999876
No 85
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.24 E-value=0.012 Score=43.90 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccc
Q 036971 30 VLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPV 107 (221)
Q Consensus 30 ~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~ 107 (221)
....+|++.+.+... . + ++.|+++||+.+++ ++. .++++|..|...|+++..+ | .|.|.++.-
T Consensus 12 ~~~yAl~~L~~La~~----~-~--~~~~~~~iA~~~~i-~~~----~l~kil~~L~~~Glv~s~r--G-~GGy~L~~~ 74 (149)
T 1ylf_A 12 RFSIAVHILSILKNN----P-S--SLCTSDYMAESVNT-NPV----VIRKIMSYLKQAGFVYVNR--G-PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHHHHS----C-G--GGCCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEC------CCEEESSC
T ss_pred HHHHHHHHHHHHHhC----C-C--CCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCcEEEcc--C-CCceEeCCC
Confidence 344567776665331 1 1 58999999999999 888 9999999999999998763 2 566777653
No 86
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.21 E-value=0.011 Score=42.63 Aligned_cols=48 Identities=17% Similarity=0.314 Sum_probs=41.3
Q ss_pred HHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 37 AVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 37 ~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
--.++.|+..|.+ ++.++.+||+.+|+ ++. .+.+.|+.|...|++...
T Consensus 45 ~~~rl~IL~~L~~----~~~s~~ela~~lgi-s~s----tvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 45 DPNRLRLLSLLAR----SELCVGDLAQAIGV-SES----AVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp CHHHHHHHHHHTT----CCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHc----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCeEEE
Confidence 3356677888876 58999999999999 776 999999999999999976
No 87
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=95.21 E-value=0.014 Score=47.98 Aligned_cols=33 Identities=3% Similarity=-0.115 Sum_probs=26.4
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+++..+ .....+|+|||||+|.++..++++.
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g 67 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG 67 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC
Confidence 34566666 6667899999999999999998753
No 88
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=95.14 E-value=0.027 Score=42.79 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=40.2
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccc
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPV 107 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~ 107 (221)
+++|.++||+.+++ ++. .++++|..|...|+++-.+ |..|.|++..-
T Consensus 27 ~~~s~~~IA~~~~i-s~~----~l~kil~~L~~aGlv~s~r--G~~GGy~Lar~ 73 (162)
T 3k69_A 27 SKVASRELAQSLHL-NPV----MIRNILSVLHKHGYLTGTV--GKNGGYQLDLA 73 (162)
T ss_dssp SCBCHHHHHHHHTS-CGG----GTHHHHHHHHHTTSSEEEC--STTCEEECCSC
T ss_pred CCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEeec--CCCCCeEecCC
Confidence 58999999999999 998 9999999999999997763 24567888754
No 89
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=95.14 E-value=0.018 Score=46.63 Aligned_cols=27 Identities=15% Similarity=0.291 Sum_probs=24.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
+....+|||||||.|.++..+++.+|+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~ 61 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPD 61 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTT
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCC
Confidence 566789999999999999999999875
No 90
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=95.13 E-value=0.0055 Score=47.50 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.8
Q ss_pred CCeEEEecCCccHHHHHHHhhCCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
..+|+|||||.|.++..+++.+|+
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~ 89 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPE 89 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTT
T ss_pred CCeEEEECCCCCHHHHHHHHHCCC
Confidence 479999999999999999998875
No 91
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=95.12 E-value=0.026 Score=45.43 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.1
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
...+|||||||.|.++..+++..+
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~ 73 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG 73 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC
Confidence 457999999999999999988765
No 92
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=95.12 E-value=0.013 Score=48.37 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=22.6
Q ss_pred CCCeEEEecCCccHHHHHHHhhCCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
...+|||||||.|.++..+++.+|.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~ 70 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGP 70 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCC
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999999874
No 93
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.11 E-value=0.011 Score=40.55 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=47.6
Q ss_pred hhChhhHHHhcCCCCCCCHHHH----HhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEI----ASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eL----A~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~ 112 (221)
++.|+..|... ++++..+| |+.+++ ++. .+.++++.|...|++.+.... ....|.+|+.++.+.
T Consensus 10 q~~iL~~l~~~---~~~~~~el~~~la~~l~i-s~~----tvs~~l~~Le~~gli~r~~~~-r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDN---EGIATYDLYKKVNAEFPM-STA----TFYDAKKFLIQEGFVKERQER-GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTC---TTCBHHHHHHHHHTTSCC-CHH----HHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHHHHcCC-CHH----HHHHHHHHHHHCCCEEEEecC-CceEEEECHHHHHHH
Confidence 34456667665 48999999 999999 877 999999999999999986210 123466777666554
No 94
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=95.08 E-value=0.015 Score=46.54 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 184 INKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 184 ~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
...+++.++ .....+|||||||.|.++..+++.+
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~ 77 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY 77 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc
Confidence 345566666 6677899999999999999998864
No 95
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=95.08 E-value=0.014 Score=50.55 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 182 FVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+..+++.++ .....+|||||||.|.++..+++..
T Consensus 94 ~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g 129 (416)
T 4e2x_A 94 MLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG 129 (416)
T ss_dssp HHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT
T ss_pred HHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC
Confidence 34456677777 6667899999999999999998764
No 96
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=95.05 E-value=0.016 Score=46.02 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=24.7
Q ss_pred HhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 189 ESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 189 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
+.++ +....+|+|||||+|.++..+++.+|
T Consensus 68 ~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~ 97 (230)
T 1fbn_A 68 KVMP-IKRDSKILYLGASAGTTPSHVADIAD 97 (230)
T ss_dssp CCCC-CCTTCEEEEESCCSSHHHHHHHHHTT
T ss_pred cccC-CCCCCEEEEEcccCCHHHHHHHHHcC
Confidence 3344 55668999999999999999998876
No 97
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=95.05 E-value=0.03 Score=46.01 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.5
Q ss_pred CCCeEEEecCCc---cHHHHHHHhhCCC
Q 036971 196 NITRLVDVGGGL---GITLSDHNFQIPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG~---G~~~~~l~~~~P~ 220 (221)
+..+|||||||. |.+...+.+.+|+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~ 104 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPD 104 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCC
Confidence 457999999999 9988888888875
No 98
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.04 E-value=0.087 Score=38.59 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=45.1
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeec-cCCCC---cceeccccccccc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSF-STHGV---RLYSLAPVAKYYV 112 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~-~~~~~---~~y~lt~~s~~L~ 112 (221)
..|+..| .. +++|..+||+.+++ ++. .+.++++.|...|++.... .+..+ -.+.+|+.+..+.
T Consensus 41 ~~iL~~l-~~---~~~t~~eLa~~l~~-~~~----~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 41 SHVLNML-SI---EALTVGQITEKQGV-NKA----AVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHH-HH---SCBCHHHHHHHHCS-CSS----HHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHH-Hc---CCcCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 3467778 54 59999999999999 887 9999999999999999721 00012 2356666665544
No 99
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.03 E-value=0.025 Score=40.87 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=50.9
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
.++.|+..|... +++|..+||+.+++ ++. .+.+.++.|...|++...... ...-.|.+|+.+..+.
T Consensus 32 ~~~~iL~~l~~~---~~~~~~ela~~l~i-s~~----~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD---APLHQLALQERLQI-DRA----AVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345578888876 48999999999999 877 999999999999999986321 0122477888777665
No 100
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=94.93 E-value=0.028 Score=48.42 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=27.8
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
.+++.++ .....+|+|||||.|.++..+++.+|+
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~ 246 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQ 246 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCC
Confidence 3566666 444489999999999999999999885
No 101
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=94.93 E-value=0.021 Score=39.97 Aligned_cols=77 Identities=17% Similarity=0.118 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhC-CCCCCcchhhhHHHHHHHHhcCCceeeeccC
Q 036971 18 VYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQI-PTKNPEGAAKMLDRVLGLLVSFNILCCSFST 96 (221)
Q Consensus 18 ~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~ 96 (221)
+...++++..+.+...+|. .|.. ++++..||++.+ |+ ++. .+.+.|+.|...|++++....
T Consensus 14 ~~~~~l~~l~~~~~~~IL~---------~L~~----~~~~~~eL~~~l~gi-s~~----~ls~~L~~Le~~GlV~r~~~~ 75 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLIIF---------QINR----RIIRYGELKRAIPGI-SEK----MLIDELKFLCGKGLIKKKQYP 75 (107)
T ss_dssp HHHHHHHHHTSSSHHHHHH---------HHTT----SCEEHHHHHHHSTTC-CHH----HHHHHHHHHHHTTSEEEEEEC
T ss_pred CHHHHHHHHcCccHHHHHH---------HHHh----CCcCHHHHHHHcccC-CHH----HHHHHHHHHHHCCCEEEeecC
Confidence 4566667776666655544 3443 589999999999 49 777 999999999999999986321
Q ss_pred CC--Ccceeccccccccc
Q 036971 97 HG--VRLYSLAPVAKYYV 112 (221)
Q Consensus 97 ~~--~~~y~lt~~s~~L~ 112 (221)
.+ .-.|.+|+.++.+.
T Consensus 76 ~d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 76 EVPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SSSCEEEEEECHHHHTTH
T ss_pred CCCCeeEEEECccHHHHH
Confidence 01 12589998876554
No 102
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=94.93 E-value=0.014 Score=46.65 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.0
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
...+|||||||.|..+..+++..|
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~ 83 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPI 83 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCE
T ss_pred CCCeEEEECCCccHHHHHHHHhCC
Confidence 357999999999999999988766
No 103
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.92 E-value=0.014 Score=43.03 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=47.2
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
.++.|...|...+ +++|..+||+.+++ ++. .+.++++.|...|++.+.... .+. .+.+|+.++.+.
T Consensus 40 ~q~~vL~~l~~~~--~~~t~~eLa~~l~i-~~~----tvs~~l~~Le~~Glv~r~~~~-~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 40 RSYSVLVLACEQA--EGVNQRGVAATMGL-DPS----QIVGLVDELEERGLVVRTLDP-SDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHST--TCCCSHHHHHHHTC-CHH----HHHHHHHHHHTTTSEEC------------CEECHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCcCHHHHHHHHCC-CHh----HHHHHHHHHHHCCCEEeeCCc-cccchheeeECHHHHHHH
Confidence 4455677777654 47899999999999 887 999999999999999985210 111 266777766554
No 104
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=94.92 E-value=0.015 Score=46.71 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
+...+|||||||.|.++..+++.+|+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~ 73 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPE 73 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999885
No 105
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=94.92 E-value=0.021 Score=41.13 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=48.5
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCC--CCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH--GVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~--~~~~y~lt~~s~~L~ 112 (221)
.++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++....... ..-.+.+|+.++.+.
T Consensus 34 ~~~~iL~~l~~~---~~~~~~ela~~l~~-~~~----tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 34 VQFGVIQVLAKS---GKVSMSKLIENMGC-VPS----NMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHCSS-CCT----THHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC-Chh----HHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 345577788776 48999999999999 887 9999999999999999852110 011256666665444
No 106
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=94.92 E-value=0.012 Score=41.60 Aligned_cols=77 Identities=9% Similarity=-0.010 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhC-CCCCCcchhhhHHHHHHHHhcCCceeeeccC
Q 036971 18 VYSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQI-PTKNPEGAAKMLDRVLGLLVSFNILCCSFST 96 (221)
Q Consensus 18 ~~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~ 96 (221)
+...++++..+.+...+|. .|.. ++++..+||+.+ ++ ++. .+.+.|+.|...|+++.....
T Consensus 11 ~~~~~l~~l~~~~~~~IL~---------~L~~----~~~~~~eLa~~l~~i-s~~----tvs~~L~~Le~~GlI~r~~~~ 72 (112)
T 1z7u_A 11 SINLALSTINGKWKLSLMD---------ELFQ----GTKRNGELMRALDGI-TQR----VLTDRLREMEKDGLVHRESFN 72 (112)
T ss_dssp HHHHHHHTTCSTTHHHHHH---------HHHH----SCBCHHHHHHHSTTC-CHH----HHHHHHHHHHHHTSEEEEEEC
T ss_pred CHHHHHHHHcCccHHHHHH---------HHHh----CCCCHHHHHHHhccC-CHH----HHHHHHHHHHHCCCEEEeecC
Confidence 3455556555555544443 4444 489999999999 99 877 999999999999999986321
Q ss_pred CC--Ccceeccccccccc
Q 036971 97 HG--VRLYSLAPVAKYYV 112 (221)
Q Consensus 97 ~~--~~~y~lt~~s~~L~ 112 (221)
.+ .-.|.+|+.++.+.
T Consensus 73 ~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 73 ELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp CSSCEEEEEECHHHHHHH
T ss_pred CCCCeEEEEECHhHHHHH
Confidence 01 12488888776554
No 107
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.045 Score=45.01 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.4
Q ss_pred CCCCeEEEecCCccHHHHHHHhhC
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
....+|||||||.|.++..+++.+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~ 58 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQEL 58 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC
Confidence 356899999999999999999876
No 108
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=94.85 E-value=0.0064 Score=47.48 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=20.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.....+|||||||.|.++..+++..
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~ 73 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC 73 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC
Confidence 4456799999999999999987754
No 109
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=94.83 E-value=0.018 Score=47.70 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=27.3
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
..+++..+ .....+|+|||||.|.++..+++..+.
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~ 66 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLAT 66 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCB
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCC
Confidence 34555665 556689999999999999999987553
No 110
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=94.81 E-value=0.064 Score=39.64 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=46.5
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCC---cceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGV---RLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~~y~lt~~s~~L~ 112 (221)
++.|+..|...+ +++|..+||+.+++ ++. .+.++++.|...|++.+.... .+ -.+.+|+.+..+.
T Consensus 49 ~~~iL~~L~~~~--~~~~~~ela~~l~i-~~~----tvs~~l~~Le~~Gli~r~~~~-~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 49 KFDAMAQLARNP--DGLSMGKLSGALKV-TNG----NVSGLVNRLIKDGMVVKAMSA-DDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHCT--TCEEHHHHHHHCSS-CCS----CHHHHHHHHHHHTSEEEC---------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCC-Chh----hHHHHHHHHHHCCCEEeecCC-CCCCeEEEEEChhHHHHH
Confidence 445778884322 58999999999999 887 999999999999999985210 11 1256666665444
No 111
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=94.80 E-value=0.038 Score=44.11 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=20.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHhh
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.....+|+|||||.|.++..+++.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~ 60 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR 60 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC
Confidence 556689999999999999998875
No 112
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=94.80 E-value=0.013 Score=46.22 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=21.8
Q ss_pred CCCeEEEecCCccHHHHHHHhhCCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
...+|||||||.|.++..+++..|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~ 66 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFND 66 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCSC
T ss_pred CCCcEEEECCCCCHHHHHHHHhCCc
Confidence 3568999999999999999988765
No 113
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=94.79 E-value=0.02 Score=43.34 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=22.4
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 187 IVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 187 ~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+++.+ .....+|+|||||.|.++..+++.
T Consensus 39 ~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~ 67 (195)
T 3cgg_A 39 LIDAM--APRGAKILDAGCGQGRIGGYLSKQ 67 (195)
T ss_dssp HHHHH--SCTTCEEEEETCTTTHHHHHHHHT
T ss_pred HHHHh--ccCCCeEEEECCCCCHHHHHHHHC
Confidence 44444 235679999999999999998875
No 114
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=94.76 E-value=0.033 Score=44.22 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.0
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
.....+|||||||.|.++..+++..++
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~~ 80 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFPR 80 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSSC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCCC
Confidence 345578999999999999999998764
No 115
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=94.71 E-value=0.015 Score=47.59 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=20.7
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
...+|||||||+|.++..+++..+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~ 80 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF 80 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC
Confidence 357999999999999999988643
No 116
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=94.71 E-value=0.019 Score=45.94 Aligned_cols=34 Identities=15% Similarity=0.041 Sum_probs=28.0
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh-CC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ-IP 219 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P 219 (221)
..+++.++ +....+|||||||.|.++..+++. .|
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~ 120 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGE 120 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCC
Confidence 45666677 777789999999999999999987 44
No 117
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.71 E-value=0.011 Score=40.51 Aligned_cols=63 Identities=16% Similarity=0.094 Sum_probs=45.6
Q ss_pred hhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhh-HHHHHHHHhcCCceeeeccCCCCcceeccccccccc
Q 036971 43 VLDIINKAGPGAELSASEIASQIPTKNPEGAAKM-LDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYV 112 (221)
Q Consensus 43 lfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~-l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~ 112 (221)
+...|...+ .++|..+||+.+++ ++. . +.++++.|...|++..+..+...-.+.+|+.++.+.
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~i-s~~----t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASGV-SEK----TFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHCC-CHH----HHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHCC-Cch----HHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHH
Confidence 444566653 37999999999999 877 8 999999999999999542111122467777776554
No 118
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=94.67 E-value=0.026 Score=44.39 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.2
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
.....+|+|||||+|.++..+++..|
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~ 80 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD 80 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC
Confidence 45567999999999999999988765
No 119
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=94.64 E-value=0.021 Score=42.52 Aligned_cols=74 Identities=9% Similarity=0.022 Sum_probs=52.2
Q ss_pred HHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCC-CC
Q 036971 21 HAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH-GV 99 (221)
Q Consensus 21 ~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~-~~ 99 (221)
.+++++.+.|...+|. .|.. ++.+..||++.+++ ++. .+.+.|+.|...|++++..... ..
T Consensus 16 ~~l~~l~~~w~l~IL~---------~L~~----g~~~~~eLa~~lgi-s~~----tls~~L~~Le~~GlI~r~~~~~d~~ 77 (146)
T 2f2e_A 16 RPLDVIGDGWSMLIVR---------DAFE----GLTRFGEFQKSLGL-AKN----ILAARLRNLVEHGVMVAVPAESGSH 77 (146)
T ss_dssp TTHHHHCSSSHHHHHH---------HHHT----TCCSHHHHHHHHCC-CHH----HHHHHHHHHHHTTSEEEEECSSSSC
T ss_pred HHHHHhCCchHHHHHH---------HHHh----CCCCHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEEEEecCCCCe
Confidence 3455555555544443 3333 58999999999999 877 9999999999999999863210 12
Q ss_pred cceeccccccccc
Q 036971 100 RLYSLAPVAKYYV 112 (221)
Q Consensus 100 ~~y~lt~~s~~L~ 112 (221)
-.|.+|+.++.+.
T Consensus 78 ~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 78 QEYRLTDKGRALF 90 (146)
T ss_dssp EEEEECHHHHTTH
T ss_pred EEEEECchHHHHH
Confidence 3688888776554
No 120
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=94.64 E-value=0.036 Score=41.84 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=25.0
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.+++.++ .....+|+|||||.|.++..+++.
T Consensus 43 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~ 73 (194)
T 1dus_A 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADE 73 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG
T ss_pred HHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc
Confidence 4556666 666789999999999999988765
No 121
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=94.63 E-value=0.015 Score=47.39 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=21.2
Q ss_pred CCCeEEEecCCccHHHHHHHhhCCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
...+|||||||+|.++..+++.+.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~~ 63 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFER 63 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCSE
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCCE
Confidence 3468999999999999999887653
No 122
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.62 E-value=0.017 Score=41.65 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=39.9
Q ss_pred hhChhhHHHhcCCCCC-CCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 40 NLDVLDIINKAGPGAE-LSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~-~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+..|+..|...+ ++ +|+.|||+.+++ +.. .+.|.|+.|...|++.+.
T Consensus 28 e~~il~~L~~~~--~~~~t~~eLa~~l~~-s~s----TV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEP--DRWIDTDALSKSLKL-DVS----TVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHST--TCCEEHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCC--CCCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEee
Confidence 455667777764 46 999999999999 777 999999999999999985
No 123
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=94.62 E-value=0.016 Score=43.09 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=46.0
Q ss_pred hhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccccc
Q 036971 43 VLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYV 112 (221)
Q Consensus 43 lfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~ 112 (221)
|...|... ++.+..+||+.+++ ++. .+.+.|+.|...|++... .+..+.+|+.+..+.
T Consensus 45 i~~~l~~~---~~~~~~~la~~l~v-s~~----tvs~~l~~Le~~Glv~r~----~~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 45 ISDLIREV---GEARQVDMAARLGV-SQP----TVAKMLKRLATMGLIEMI----PWRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHHHH---SCCCHHHHHHHHTS-CHH----HHHHHHHHHHHTTCEEEE----TTTEEEECHHHHHHH
T ss_pred HHHHHHhC---CCcCHHHHHHHhCc-CHH----HHHHHHHHHHHCCCEEEe----cCCceEEChhHHHHH
Confidence 33466665 47999999999999 777 999999999999999986 355677777766543
No 124
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=94.59 E-value=0.03 Score=49.25 Aligned_cols=34 Identities=12% Similarity=0.357 Sum_probs=27.7
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..+++.++ .....+|||||||.|.++..+++.+|
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g 265 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECG 265 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCC
Confidence 34566666 66778999999999999999998765
No 125
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=94.59 E-value=0.033 Score=45.80 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=17.3
Q ss_pred CCeEEEecCCccHHHH----HHHhhCCC
Q 036971 197 ITRLVDVGGGLGITLS----DHNFQIPS 220 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~----~l~~~~P~ 220 (221)
..+|||||||+|.++. .++..+|+
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~ 80 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPG 80 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTT
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCC
Confidence 4689999999997654 44555554
No 126
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=94.58 E-value=0.039 Score=41.28 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=23.0
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 187 IVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 187 ~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+++.++ .....+|+|||||.|.++..+++.
T Consensus 27 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~ 56 (183)
T 2yxd_A 27 SIGKLN-LNKDDVVVDVGCGSGGMTVEIAKR 56 (183)
T ss_dssp HHHHHC-CCTTCEEEEESCCCSHHHHHHHTT
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHhc
Confidence 444455 555679999999999999888753
No 127
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=94.58 E-value=0.036 Score=48.60 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 184 INKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 184 ~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
+..+++.++ .....+|+|||||.|..+..+++.+|
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g 196 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATN 196 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCC
Confidence 345666666 67778999999999999999998765
No 128
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=94.57 E-value=0.0068 Score=48.34 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCCeEEEecCCccHHHHHHHhhCCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
...+|||||||.|..+..+++.+|+
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~ 95 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDD 95 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTT
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCC
Confidence 3679999999999999999997764
No 129
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=94.57 E-value=0.026 Score=45.68 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.8
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
.....+|+|||||+|..+..++..+|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~ 104 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPE 104 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTT
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCC
Confidence 345689999999999999999999886
No 130
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.55 E-value=0.021 Score=41.56 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=41.5
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccccccc
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYY 111 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L 111 (221)
++.|..+||+.+++ ++. .+.+.++.|...|++... ...|.+|+.+..+
T Consensus 30 ~~~s~~ela~~l~i-s~~----tv~~~l~~Le~~Gli~r~-----~~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 30 EGAKINRIAKDLKI-APS----SVFEEVSHLEEKGLVKKK-----EDGVWITNNGTRS 77 (139)
T ss_dssp SCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCC-ChH----HHHHHHHHHHHCCCEEec-----CCeEEEChhHHHH
Confidence 58999999999999 877 999999999999999986 3667888776544
No 131
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=94.51 E-value=0.023 Score=44.67 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.7
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
...+|+|||||.|..+..+++.+|
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~ 92 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALP 92 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSC
T ss_pred CCCEEEEEcCCccHHHHHHHHhCC
Confidence 357999999999999999999876
No 132
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=94.50 E-value=0.052 Score=43.49 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=24.2
Q ss_pred HHHHhcCCCC-CCCeEEEecCCccHHHHHHHhhC
Q 036971 186 KIVESYKGFQ-NITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 186 ~~l~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..++.++ .. ...+|+|||||+|.++..+++.-
T Consensus 27 ~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g 59 (232)
T 3opn_A 27 KALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG 59 (232)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT
T ss_pred HHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC
Confidence 4455665 32 34699999999999999988763
No 133
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=94.49 E-value=0.027 Score=47.67 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=27.8
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
..+++.++ .....+|+|||||.|.++..+++.+|+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~ 220 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPK 220 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTT
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCC
Confidence 34566665 334568999999999999999999885
No 134
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=94.49 E-value=0.045 Score=44.17 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=24.2
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 187 IVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 187 ~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+++.++......+|||||||.|.++..+++.
T Consensus 37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~ 67 (267)
T 3kkz_A 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGH 67 (267)
T ss_dssp HHTTCCCCCTTCEEEEETCTTCHHHHHHHTT
T ss_pred HHHhcccCCCCCEEEEeCCCCCHHHHHHHhc
Confidence 3444433456789999999999999999887
No 135
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=94.48 E-value=0.033 Score=38.48 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=49.3
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHh-hCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIAS-QIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYVS 113 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~-~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~~ 113 (221)
++.|+-.|... ++.|..+||+ ..++ +.. .+.|=++.|...|+++.+ ++| ..+|+.++.+..
T Consensus 18 QfsiL~~L~~~---~~~t~~~Lae~~l~~-drs----tvsrnl~~L~r~GlVe~~----~~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKK---DFITAAEVREVHPDL-GNA----VVNSNIGVLIKKGLVEKS----GDG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHS---TTBCHHHHHHTCTTS-CHH----HHHHHHHHHHTTTSEEEE----TTE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHhcc-cHH----HHHHHHHHHHHCCCeecC----CCC-eeeCHhHHHHHH
Confidence 44566678887 4999999999 9999 776 899999999999999944 344 888888876653
No 136
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=94.47 E-value=0.048 Score=45.20 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 184 INKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 184 ~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
...+++.++ .....+|||||||.|.++..+++.+
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~ 112 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF 112 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC
Confidence 345666666 6667899999999999999998764
No 137
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=94.47 E-value=0.017 Score=42.28 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=53.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhC-CCCCCcchhhhHHHHHHHHhcCCceeeeccCC
Q 036971 19 YSHAMVLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQI-PTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH 97 (221)
Q Consensus 19 ~~~l~~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~ 97 (221)
...+++++.+.|...+| ..|.. ++++..||++.+ |+ ++. .|.+.|+.|...|++.+.....
T Consensus 25 ~~~~l~~l~~~w~l~IL---------~~L~~----g~~~~~eLa~~l~gi-s~~----tls~~L~~Le~~GlV~r~~~~~ 86 (131)
T 1yyv_A 25 SREVLKHVTSRWGVLIL---------VALRD----GTHRFSDLRRXMGGV-SEX----MLAQSLQALEQDGFLNRVSYPV 86 (131)
T ss_dssp HHHHHHHHHSHHHHHHH---------HHGGG----CCEEHHHHHHHSTTC-CHH----HHHHHHHHHHHHTCEEEEEECS
T ss_pred HHHHHHHHcCCcHHHHH---------HHHHc----CCCCHHHHHHHhccC-CHH----HHHHHHHHHHHCCcEEEEecCC
Confidence 44455555555544333 34444 589999999999 79 777 9999999999999999863210
Q ss_pred --CCcceeccccccccc
Q 036971 98 --GVRLYSLAPVAKYYV 112 (221)
Q Consensus 98 --~~~~y~lt~~s~~L~ 112 (221)
..-.|.+|+.++.+.
T Consensus 87 d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 87 VPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SSCEEEEEECHHHHHHH
T ss_pred CCCeEEEEECccHHHHH
Confidence 112588988876654
No 138
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=94.46 E-value=0.021 Score=41.22 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=49.2
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCC---cceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGV---RLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~~y~lt~~s~~L~ 112 (221)
.++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++...... .+ -.|.+|+.+..+.
T Consensus 39 ~~~~iL~~l~~~---~~~t~~ela~~l~~-~~~----tvs~~l~~L~~~glv~r~~~~-~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 39 TQWAALVRLGET---GPCPQNQLGRLTAM-DAA----TIKGVVERLDKRGLIQRSADP-DDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHTTC-CHH----HHHHHHHHHHHTTCEEEEEET-TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEeeCCC-CCCCeeeeEECHhHHHHH
Confidence 355678888776 48999999999999 877 999999999999999985210 11 1366776665444
No 139
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=94.43 E-value=0.026 Score=40.98 Aligned_cols=66 Identities=9% Similarity=0.118 Sum_probs=49.3
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCC--CCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH--GVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~--~~~~y~lt~~s~~L~ 112 (221)
.++.|+..|... +++|..+||+.+++ ++. .+.+.++.|...|++....... ..-.+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~~~---~~~~~~ela~~l~~-~~~----tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 38 PQFLVLTILWDE---SPVNVKKVVTELAL-DTG----TVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHS---SEEEHHHHHHHTTC-CTT----THHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC-Chh----hHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 455577788876 48999999999999 887 9999999999999999863110 011466676666544
No 140
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.42 E-value=0.036 Score=40.35 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=49.4
Q ss_pred HHhhChhhHHHh-cCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 38 VVNLDVLDIINK-AGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 38 av~lglfd~L~~-~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
..++.|+..|.. . +++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.+..+.
T Consensus 35 ~~~~~iL~~l~~~~---~~~~~~~la~~l~i-~~~----~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG---GDVTPSELAAAERM-RSS----NLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHTT---SCBCHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCCCHHHHHHHhCC-Chh----hHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 345667888887 5 58999999999999 877 999999999999999986210 0112366676665544
No 141
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=94.39 E-value=0.04 Score=45.40 Aligned_cols=32 Identities=25% Similarity=0.180 Sum_probs=25.4
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+++..+ .... +|+|||||.|.++..+++..
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~ 68 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG 68 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC
Confidence 34566666 5556 99999999999999998865
No 142
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=94.39 E-value=0.11 Score=41.30 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=23.9
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.+++... .....+|||||||.|.++..+++.
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~ 62 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER 62 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC
Confidence 4455554 445679999999999999998875
No 143
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.37 E-value=0.13 Score=37.79 Aligned_cols=65 Identities=8% Similarity=0.054 Sum_probs=47.7
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.++.+.
T Consensus 45 ~~~iL~~l~~~---~~~t~~ela~~l~i-~~~----tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 45 EWRVLACLVDN---DAMMITRLAKLSLM-EQS----RMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHSSC---SCBCHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 44567777765 58999999999999 877 999999999999999985210 0012366777666544
No 144
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=94.37 E-value=0.059 Score=43.91 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=26.3
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
..+++.++ ....+|+|||||+|.++..+++.+|+
T Consensus 100 ~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~ 133 (276)
T 2b3t_A 100 EQALARLP--EQPCRILDLGTGTGAIALALASERPD 133 (276)
T ss_dssp HHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTT
T ss_pred HHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCC
Confidence 34455543 23569999999999999999998875
No 145
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=94.35 E-value=0.049 Score=42.44 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=24.0
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 187 IVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 187 ~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
++..++ .....+|+|||||.|.++..+++.
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~ 76 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA 76 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc
Confidence 444555 556689999999999999998875
No 146
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=94.31 E-value=0.028 Score=41.76 Aligned_cols=25 Identities=16% Similarity=-0.017 Sum_probs=21.6
Q ss_pred CCCeEEEecCCccHHHHHHHhhCCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
...+|+|+|||.|.++..+++..|+
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~ 65 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE 65 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe
Confidence 3579999999999999999987663
No 147
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=94.26 E-value=0.034 Score=41.25 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccc
Q 036971 30 VLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPV 107 (221)
Q Consensus 30 ~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~ 107 (221)
....||++.+.+ +... +. |+++||+.+++ ++. .|+++|..|...||+.-.+ | .|.|.++.-
T Consensus 7 ~~~yAl~~L~~L------a~~~--~~-s~~~IA~~~~i-~~~----~l~kIl~~L~~aGlv~s~r--G-~GGy~Lar~ 67 (145)
T 1xd7_A 7 RLAVAIHILSLI------SMDE--KT-SSEIIADSVNT-NPV----VVRRMISLLKKADILTSRA--G-VPGASLKKD 67 (145)
T ss_dssp HHHHHHHHHHHH------HTCS--CC-CHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEECCS--S-SSSCEESSC
T ss_pred HHHHHHHHHHHH------HhCC--CC-CHHHHHHHHCc-CHH----HHHHHHHHHHHCCceEeec--C-CCCceecCC
Confidence 344566666543 4332 35 99999999999 888 9999999999999998763 3 566776643
No 148
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.25 E-value=0.031 Score=38.35 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=39.9
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.+..|+..|... +++|..+||+.+++ ++. .+.+.|+.|...|++...
T Consensus 21 ~~~~il~~l~~~---~~~s~~ela~~l~i-s~~----tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLER---GGMRVSEIARELDL-SAR----FVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEEE
Confidence 345566677665 48999999999999 887 999999999999999986
No 149
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.21 E-value=0.072 Score=39.06 Aligned_cols=64 Identities=25% Similarity=0.256 Sum_probs=47.5
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++.+.... .+. .+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~---~~~t~~ela~~l~~-s~~----tvs~~l~~Le~~glv~r~~~~-~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKH---GSLKVSEIAERMEV-KPS----AVTLMADRLEQKNLIARTHNT-KDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEEECS-SCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEeecCCC-CCCceEEEEECHHHHHHH
Confidence 34467788776 48999999999999 877 999999999999999986311 111 356666655443
No 150
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=94.18 E-value=0.03 Score=41.21 Aligned_cols=65 Identities=9% Similarity=0.137 Sum_probs=49.2
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceee--eccCCCCc---ceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCC--SFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~--~~~~~~~~---~y~lt~~s~~L~ 112 (221)
.++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++.+ .... .+. .+.+|+.+..+.
T Consensus 42 ~~~~iL~~l~~~---~~~t~~eLa~~l~~-~~~----tvs~~l~~Le~~Glv~r~~~~~~-~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYST---PGISVADLTKRLII-TGS----SAAANVDGLISLGLVVKLNKTIP-NDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEESCC--C-TTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEecCcCCC-CCCceeEeEECHHHHHHH
Confidence 345577788876 48999999999999 877 99999999999999998 4211 122 477777776544
No 151
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.16 E-value=0.027 Score=39.96 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=40.6
Q ss_pred HHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 38 VVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 38 av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
-.++.|+..|.+ ++.++.+||+.+++ ++. .+.+.|+.|...|++...
T Consensus 32 ~~~~~il~~L~~----~~~s~~ela~~l~i-s~s----tvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRN----GPLPVTDLAEAIGM-EQS----AVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHH----CCCCHHHHHHHHSS-CHH----HHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHH----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEE
Confidence 456667777877 38999999999999 777 999999999999999875
No 152
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=94.12 E-value=0.028 Score=45.66 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 184 INKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 184 ~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+..++..++ .....+|+|||||.|.++..+++.
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~ 120 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRA 120 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHH
Confidence 345666677 666789999999999999999885
No 153
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=94.10 E-value=0.068 Score=41.28 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=25.1
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.+++.++ .....+|+|||||.|.++..+++.
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~ 98 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL 98 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh
Confidence 3455566 666789999999999999998875
No 154
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=94.09 E-value=0.054 Score=42.03 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=25.7
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.+++.+. .....+|+|||||.|.++..+++..
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~ 99 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIV 99 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHh
Confidence 4455555 5566899999999999999998876
No 155
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=94.06 E-value=0.064 Score=42.10 Aligned_cols=33 Identities=9% Similarity=0.231 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+++.+. .....+|+|||||.|.++..+++..
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~ 92 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV 92 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc
Confidence 34555666 5667899999999999999988764
No 156
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=94.05 E-value=0.023 Score=41.75 Aligned_cols=65 Identities=11% Similarity=0.198 Sum_probs=47.7
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.++.+.
T Consensus 42 ~~~iL~~l~~~---~~~t~~ela~~l~~-~~~----~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 42 QRAILEGLSLT---PGATAPQLGAALQM-KRQ----YISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 44577788876 48999999999999 877 999999999999999986311 0011355666555443
No 157
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.04 E-value=0.037 Score=36.50 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=47.2
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLA 105 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt 105 (221)
.+-.|++.|.++| .|+...|||+.+|+ +-. -+.++|..|-..|.+... ..-.|.++
T Consensus 20 ~eekVLe~LkeaG--~PlkageIae~~Gv-dKK----eVdKaik~LKkEgkI~SP----kRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAG--SPVKLAQLVKECQA-PKR----ELNQVLYRMKKELKVSLT----SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHT--SCEEHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEE----ETTEEEES
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHcCCccCC----CCceeeCC
Confidence 3456888999998 79999999999999 877 899999999999999876 35556654
No 158
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.04 E-value=0.025 Score=40.75 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=47.4
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++...... .++ .+.+|+.+..+.
T Consensus 31 ~~~iL~~l~~~---~~~~~~ela~~l~~-s~~----tvs~~l~~L~~~glv~~~~~~-~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 31 QVACLLRIHRE---PGIKQDELATFFHV-DKG----TIARTLRRLEESGFIEREQDP-ENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHS---TTCBHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEeecCC-CCceeEEeeECHhHHHHH
Confidence 44567777776 48999999999999 877 999999999999999985210 112 256666655443
No 159
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=94.03 E-value=0.026 Score=41.26 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=47.8
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
.++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.++.+.
T Consensus 41 ~~~~iL~~l~~~---~~~t~~ela~~l~~-~~~----tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 41 TEWRIISVLSSA---SDCSVQKISDILGL-DKA----AVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHS---SSBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 455677888886 48999999999999 877 999999999999999986211 0123466666665444
No 160
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=94.02 E-value=0.055 Score=45.90 Aligned_cols=31 Identities=23% Similarity=0.113 Sum_probs=23.4
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.+++.+. .....+|||||||.|.++..+++.
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~ 71 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA 71 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC
Confidence 3444544 334579999999999999988875
No 161
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=94.02 E-value=0.031 Score=43.44 Aligned_cols=20 Identities=20% Similarity=0.034 Sum_probs=16.9
Q ss_pred CCCCeEEEecCCccHHHHHH
Q 036971 195 QNITRLVDVGGGLGITLSDH 214 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l 214 (221)
....+|+|||||.|.++..+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l 85 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI 85 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC
T ss_pred CCCCeEEEECCcCCHHHHHh
Confidence 34579999999999998765
No 162
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=94.00 E-value=0.071 Score=45.14 Aligned_cols=30 Identities=23% Similarity=0.166 Sum_probs=22.7
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 187 IVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 187 ~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+.+... .....+|+|||||+|.++..+++.
T Consensus 56 i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~ 85 (340)
T 2fyt_A 56 IYQNPH-IFKDKVVLDVGCGTGILSMFAAKA 85 (340)
T ss_dssp HHHCGG-GTTTCEEEEETCTTSHHHHHHHHT
T ss_pred HHhhhh-hcCCCEEEEeeccCcHHHHHHHHc
Confidence 333333 444679999999999999988876
No 163
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=93.99 E-value=0.021 Score=45.24 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=23.3
Q ss_pred hcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 190 SYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 190 ~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.++ +....+|+|||||+|.++..+++.+
T Consensus 72 ~~~-~~~~~~vLDlG~G~G~~~~~la~~~ 99 (233)
T 2ipx_A 72 QIH-IKPGAKVLYLGAASGTTVSHVSDIV 99 (233)
T ss_dssp CCC-CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred eec-CCCCCEEEEEcccCCHHHHHHHHHh
Confidence 344 5566899999999999999999875
No 164
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.99 E-value=0.022 Score=41.38 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=48.7
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
.++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++...... .+. .|.+|+.++.+.
T Consensus 34 ~~~~iL~~l~~~---~~~~~~~la~~l~~-s~~----tvs~~l~~L~~~glv~r~~~~-~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 34 AQFDILQKIYFE---GPKRPGELSVLLGV-AKS----TVTGLVKRLEADGYLTRTPDP-ADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC-Cch----hHHHHHHHHHHCCCeeecCCC-CCCceEEEEECHHHHHHH
Confidence 455677788776 48999999999999 877 999999999999999986210 111 366666665444
No 165
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=93.97 E-value=0.05 Score=40.56 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=49.7
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCC--Ccceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHG--VRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~--~~~y~lt~~s~~L~ 112 (221)
+..|...|... +++|..+||+.+++ ++. .+.++++.|...|++.+.....+ .-.+.+|+.++.+.
T Consensus 48 q~~iL~~l~~~---~~~t~~eLa~~l~~-~~~----tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 48 QFTALSVLAAK---PNLSNAKLAERSFI-KPQ----SANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS-CGG----GHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 44577788886 48999999999999 887 99999999999999998632100 12367777766554
No 166
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=93.94 E-value=0.097 Score=41.04 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.2
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
...+|+|||||.|.++..+++.++
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~ 63 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG 63 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS
T ss_pred CCCeEEEecccCCHHHHHHHHhCC
Confidence 457999999999999999988765
No 167
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=93.93 E-value=0.022 Score=38.91 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=40.1
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
++|..+||+.+++ ++. .+.++++.|...|++... .++ .|.+|+.+..+.
T Consensus 30 ~~t~~eLa~~l~i-~~~----tvs~~l~~Le~~Glv~~~----~d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS-PHS----YVWLIIKKFEEAKMVECE----LEGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS-CHH----HHHHHHHHHHHTTSEEEE----EETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc-CHH----HHHHHHHHHHHCcCccCC----CCCCeEEEEEChhHHHHH
Confidence 4999999999999 877 999999999999999433 233 488888877654
No 168
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=93.90 E-value=0.032 Score=43.47 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=19.6
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|||||||.|.++..+++.
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~ 66 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA 66 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT
T ss_pred CCCeEEEeCCCCCHHHHHHHhC
Confidence 4679999999999999999875
No 169
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=93.89 E-value=0.027 Score=44.96 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=23.0
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
+....+|+|||||.|..+..+++..|+
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~ 94 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPH 94 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTT
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCC
Confidence 345689999999999999999987775
No 170
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=93.88 E-value=0.026 Score=39.00 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=37.9
Q ss_pred HHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 37 AVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 37 ~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
--.++.|+..|... ++.++.|||+.+|+ ++. .+.+.|+.|... ++...
T Consensus 26 ~~~Rl~IL~~l~~~---~~~~~~ela~~l~i-s~s----tvs~hL~~L~~~-lv~~~ 73 (99)
T 2zkz_A 26 HPMRLKIVNELYKH---KALNVTQIIQILKL-PQS----TVSQHLCKMRGK-VLKRN 73 (99)
T ss_dssp SHHHHHHHHHHHHH---SCEEHHHHHHHHTC-CHH----HHHHHHHHHBTT-TBEEE
T ss_pred CHHHHHHHHHHHHC---CCcCHHHHHHHHCc-CHH----HHHHHHHHHHHH-hhhhe
Confidence 34555666444433 58999999999999 776 999999999999 98865
No 171
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=93.86 E-value=0.032 Score=40.69 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=49.5
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCC--CCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH--GVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~--~~~~y~lt~~s~~L~ 112 (221)
.+..|+..|... +++|..+||+.+++ ++. .+.++++.|...|++.+..... ..-.+.+|+.++.+.
T Consensus 32 ~q~~iL~~l~~~---~~~t~~eLa~~l~~-~~~----tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE---GSRTQKHIGEKWSL-PKQ----TVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 445577788776 47999999999999 877 9999999999999999852110 012367777766554
No 172
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=93.86 E-value=0.029 Score=41.67 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=46.7
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.|.+|+.++.+.
T Consensus 51 ~~~iL~~l~~~---~~~t~~ela~~l~i-s~~----tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 51 EWRVITILALY---PGSSASEVSDRTAM-DKV----AVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHS---TTCCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 45577888875 58999999999999 877 999999999999999985210 0012366666665443
No 173
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=93.78 E-value=0.051 Score=44.07 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.5
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
.....+|||||||.|.++..+++++|+
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~ 60 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEK 60 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCC
Confidence 445679999999999999999999874
No 174
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=93.78 E-value=0.028 Score=46.78 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+++..+ .....+|+|||||.|.++..+++..
T Consensus 32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~~ 64 (299)
T 2h1r_A 32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPLA 64 (299)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTTS
T ss_pred HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhcC
Confidence 44555566 5566899999999999999988753
No 175
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=93.76 E-value=0.077 Score=44.21 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 184 INKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 184 ~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+..+++..+ .....+|+|||||.|.++..+++.
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~ 71 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN 71 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc
Confidence 345666666 666689999999999999999876
No 176
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=93.75 E-value=0.056 Score=43.90 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=23.3
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHh
Q 036971 187 IVESYKGFQNITRLVDVGGGLGITLSDHNF 216 (221)
Q Consensus 187 ~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~ 216 (221)
+++.++ .....+|||||||.|.++..+++
T Consensus 49 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~ 77 (279)
T 3ccf_A 49 LLQLLN-PQPGEFILDLGCGTGQLTEKIAQ 77 (279)
T ss_dssp HHHHHC-CCTTCEEEEETCTTSHHHHHHHH
T ss_pred HHHHhC-CCCCCEEEEecCCCCHHHHHHHh
Confidence 444555 55568999999999999999887
No 177
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=93.72 E-value=0.034 Score=40.89 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=50.5
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccccC
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYVSD 114 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~~~ 114 (221)
.++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.++.+...
T Consensus 48 ~~~~iL~~l~~~---~~~t~~ela~~l~~-s~~----tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 48 PQYLVMLVLWET---DERSVSEIGERLYL-DSA----TLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred HHHHHHHHHHhC---CCcCHHHHHHHhCC-Ccc----cHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHH
Confidence 345577788876 48999999999999 777 999999999999999986210 001247788877766543
No 178
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=93.71 E-value=0.05 Score=44.76 Aligned_cols=34 Identities=6% Similarity=-0.065 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 183 VINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 183 ~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
....+++.++ ... .+|||||||.|.++..+++..
T Consensus 71 ~~~~~~~~~~-~~~-~~vLDlGcG~G~~~~~l~~~~ 104 (299)
T 3g2m_A 71 EAREFATRTG-PVS-GPVLELAAGMGRLTFPFLDLG 104 (299)
T ss_dssp HHHHHHHHHC-CCC-SCEEEETCTTTTTHHHHHTTT
T ss_pred HHHHHHHhhC-CCC-CcEEEEeccCCHHHHHHHHcC
Confidence 3445566665 333 499999999999999998763
No 179
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=93.71 E-value=0.04 Score=42.73 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=22.5
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 187 IVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 187 ~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+++.+. .....+|||||||.|.++..+++.
T Consensus 44 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~ 73 (227)
T 3e8s_A 44 ILLAIL-GRQPERVLDLGCGEGWLLRALADR 73 (227)
T ss_dssp HHHHHH-HTCCSEEEEETCTTCHHHHHHHTT
T ss_pred HHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC
Confidence 344443 333589999999999999998875
No 180
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=93.67 E-value=0.13 Score=38.45 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=49.7
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCC--CCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH--GVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~--~~~~y~lt~~s~~L~ 112 (221)
.++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++.+..... ..-.+.+|+.++.+.
T Consensus 46 ~~~~iL~~L~~~---~~~t~~eLa~~l~i-s~~----tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 46 PQFRTLVILSNH---GPINLATLATLLGV-QPS----ATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 345578888876 48999999999999 777 9999999999999999863110 112367777776554
No 181
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=93.65 E-value=0.04 Score=45.53 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.7
Q ss_pred CCeEEEecCCccHHHHHHHhhCCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
..+|+|||||+|.++..+++. |+
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~-~~ 146 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF-SD 146 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-SS
T ss_pred CCEEEEEeCchhHHHHHHHHC-CC
Confidence 468999999999999999988 64
No 182
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=93.64 E-value=0.072 Score=43.02 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=27.0
Q ss_pred HHHHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 171 VFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 171 ~F~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
.|.......++..... ++.+ .....+|+|||||+|.++..+++..+
T Consensus 98 ~fgtg~~~tt~~~~~~-l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~ 143 (254)
T 2nxc_A 98 AFGTGHHETTRLALKA-LARH--LRPGDKVLDLGTGSGVLAIAAEKLGG 143 (254)
T ss_dssp ----CCSHHHHHHHHH-HHHH--CCTTCEEEEETCTTSHHHHHHHHTTC
T ss_pred cccCCCCHHHHHHHHH-HHHh--cCCCCEEEEecCCCcHHHHHHHHhCC
Confidence 3444443333443333 3333 23457999999999999999887654
No 183
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=93.62 E-value=0.068 Score=44.60 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=27.0
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
.+++..+ .....+|+|||||.|.++..+++..+.
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~ 99 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGE 99 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCC
Confidence 4555565 566789999999999999999887653
No 184
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=93.62 E-value=0.086 Score=42.88 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh-CC
Q 036971 184 INKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ-IP 219 (221)
Q Consensus 184 ~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P 219 (221)
+..++..++ +....+|||||||+|.++..+++. .|
T Consensus 101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~ 136 (277)
T 1o54_A 101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGS 136 (277)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTT
T ss_pred HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCC
Confidence 345666677 666789999999999999999988 45
No 185
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=93.62 E-value=0.033 Score=40.14 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=48.1
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
++.++..|... +++|..+||+.+++ ++. .+.++++.|...|++...... .+. .+.+|+.++.+.
T Consensus 36 ~~~iL~~l~~~---~~~~~~~la~~l~~-~~~----tvs~~l~~L~~~gli~r~~~~-~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 36 QFKVLCSIRCA---ACITPVELKKVLSV-DLG----ALTRMLDRLVCKGWVERLPNP-NDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHH---SSBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEECT-TCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHCC-ChH----HHHHHHHHHHHCCCEEecCCc-ccCceeEeEEChhHHHHH
Confidence 44566777775 48999999999999 877 999999999999999986311 122 366777666544
No 186
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=93.61 E-value=0.038 Score=40.37 Aligned_cols=65 Identities=8% Similarity=0.080 Sum_probs=47.9
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++...... ...-.+.+|+.++.+.
T Consensus 44 ~~~iL~~l~~~---~~~t~~ela~~l~~-~~~----tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEE---GDLTVGELSNKMYL-ACS----TTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC-Cch----hHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 44567788876 48999999999999 777 999999999999999986211 0012366666665444
No 187
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=93.60 E-value=0.029 Score=40.81 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=49.0
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
.+..|+..|... +++|..+||+.+++ ++. .+.++++.|...|++++.... ...-.+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~---~~~t~~eLa~~l~~-~~~----~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 38 EQWSVLEGIEAN---EPISQKEIALWTKK-DTP----TVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHH---SSEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC-CHh----hHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 445567778776 48999999999999 887 999999999999999986211 0112366777666544
No 188
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=93.53 E-value=0.065 Score=41.43 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.1
Q ss_pred CCCCeEEEecCCccHHHHHHHhh
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
....+|||||||.|.++..+++.
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~ 64 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAA 64 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHT
T ss_pred CCCCcEEEECCCCCHHHHHHHHc
Confidence 34679999999999999999875
No 189
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.51 E-value=0.031 Score=40.39 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=48.5
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
.++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++...... .+. .+.+|+.+..+.
T Consensus 37 ~~~~iL~~l~~~---~~~t~~ela~~l~~-s~~----~vs~~l~~Le~~glv~r~~~~-~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 37 QQWRVIRILRQQ---GEMESYQLANQACI-LRP----SMTGVLARLERDGIVRRWKAP-KDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC-CHh----HHHHHHHHHHHCCCEEeecCC-CCCCeeEEEECHHHHHHH
Confidence 455577788876 48999999999999 877 999999999999999986210 111 256666655443
No 190
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=93.50 E-value=0.054 Score=44.11 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=23.6
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.+++.++ .. ..+|||||||.|.++..+++.
T Consensus 60 ~~l~~~~-~~-~~~vLDiGcG~G~~~~~l~~~ 89 (285)
T 4htf_A 60 RVLAEMG-PQ-KLRVLDAGGGEGQTAIKMAER 89 (285)
T ss_dssp HHHHHTC-SS-CCEEEEETCTTCHHHHHHHHT
T ss_pred HHHHhcC-CC-CCEEEEeCCcchHHHHHHHHC
Confidence 4555555 33 479999999999999999876
No 191
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=93.47 E-value=0.18 Score=36.37 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=46.8
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
+.|...|... +++|..+||+.+++ ++. .+.++++.|...|++++.... ...-.+.+|+.++.+.
T Consensus 39 ~~vL~~l~~~---~~~t~~eLa~~l~~-~~~----tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 39 YIVLMAIEND---EKLNIKKLGERVFL-DSG----TLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHSCTT---CEEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCC-Chh----hHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 3355666654 58999999999999 887 999999999999999986311 0112467777776554
No 192
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=93.47 E-value=0.048 Score=39.59 Aligned_cols=65 Identities=8% Similarity=0.033 Sum_probs=47.4
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCC--CCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH--GVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~--~~~~y~lt~~s~~L~ 112 (221)
.++.|+..|. . +++|..+||+.+++ ++. .+.++++.|...|++....... ..-.+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~-~---~~~~~~ela~~l~~-s~~----tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 38 LDFLVLRATS-D---GPKTMAYLANRYFV-TQS----AITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHT-T---SCBCHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHh-c---CCcCHHHHHHHhCC-Cch----hHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 3455677777 4 58999999999999 877 9999999999999999863110 011356666665444
No 193
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=93.47 E-value=0.071 Score=38.73 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=51.5
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccccC
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYVSD 114 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~~~ 114 (221)
.++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|+++..... ...-.+.+|+.+..+...
T Consensus 41 ~~~~iL~~l~~~---~~~~~~~la~~l~~-~~~----tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 41 PQYLALLLLWEH---ETLTVKKMGEQLYL-DSG----TLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHTTTC-CHH----HHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC-CcC----cHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 345577778776 48999999999999 877 999999999999999986311 011237788888766544
No 194
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.45 E-value=0.044 Score=39.72 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=38.6
Q ss_pred hChhhHH-HhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 41 LDVLDII-NKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 41 lglfd~L-~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+.|+..| ... +++|..+||+.+++ ++. .+.++++.|...|++...
T Consensus 40 ~~iL~~l~~~~---~~~t~~~la~~l~~-s~~----~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 40 WLVLLHLARHR---DSPTQRELAQSVGV-EGP----TLARLLDGLESQGLVRRL 85 (146)
T ss_dssp HHHHHHHHHCS---SCCBHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHhCC-Chh----hHHHHHHHHHHCCCeeec
Confidence 4466777 543 58999999999999 877 999999999999999986
No 195
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=93.41 E-value=0.049 Score=38.10 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=38.6
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++.|+..+...| .++|..+||+.+|+ +.. .+++.|..|...|++...
T Consensus 20 ~l~Il~~l~~~g--~~~s~~eLa~~lgv-s~~----tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKG--TEMTDEEIANQLNI-KVN----DVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHC--SCBCHHHHHHTTTS-CHH----HHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEE
Confidence 345666665443 37999999999999 777 999999999999999875
No 196
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.36 E-value=0.05 Score=40.15 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=49.3
Q ss_pred HHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 38 VVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 38 av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
..++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.++.+.
T Consensus 44 ~~~~~iL~~l~~~---~~~t~~ela~~l~i-s~~----tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 44 TTELYAFLYVALF---GPKKMKEIAEFLST-TKS----NVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHTTS-CHH----HHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 3456678888876 48999999999999 777 999999999999999986311 0011356666655443
No 197
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=93.36 E-value=0.051 Score=42.52 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=21.7
Q ss_pred CCeEEEecCCccHHHHHHHhhCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..+|+|||||.|..+..+++.+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~ 81 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLS 81 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCC
T ss_pred CCEEEEecCCccHHHHHHHHhCC
Confidence 57999999999999999999987
No 198
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=93.36 E-value=0.043 Score=39.61 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=47.7
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
+..|+..|...+. +++|..+||+.+++ ++. .+.++++.|...|++...... .+. .+.+|+.+..+.
T Consensus 36 ~~~iL~~l~~~~~-~~~~~~ela~~l~~-~~~----tvs~~l~~Le~~Gli~r~~~~-~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 36 QMTIIDYLSRNKN-KEVLQRDLESEFSI-KSS----TATVLLQRMEIKKLLYRKVSG-KDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHTTT-SCCBHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEECS-SCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHCCC-CCcCHHHHHHHHCC-Ccc----hHHHHHHHHHHCCCEEeeCCC-cCCCeeeeEECHHHHHHH
Confidence 4446777877631 27999999999999 877 999999999999999986311 111 355666655443
No 199
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=93.35 E-value=0.091 Score=39.51 Aligned_cols=23 Identities=13% Similarity=-0.048 Sum_probs=19.5
Q ss_pred CCCCeEEEecCCccHHHHHHHhh
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
....+|+|||||.|.++..+++.
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~ 65 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSR 65 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT
T ss_pred cCCCCEEEeCCccCHHHHHHHHc
Confidence 34579999999999999988763
No 200
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=93.26 E-value=0.053 Score=42.39 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=21.4
Q ss_pred CCeEEEecCCccHHHHHHHhhCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..+|||||||.|..+..+++.+|
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~ 87 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALP 87 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCC
T ss_pred CCEEEEeCCcchHHHHHHHHhCC
Confidence 57999999999999999999887
No 201
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=93.25 E-value=0.074 Score=42.88 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=23.0
Q ss_pred CC-CCCeEEEecCCccHHHHHHHhhCC
Q 036971 194 FQ-NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 194 ~~-~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
.. ...+|||||||.|.++..+++..|
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~ 72 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTK 72 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCC
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcC
Confidence 55 578999999999999999998876
No 202
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=93.22 E-value=0.13 Score=40.63 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=25.3
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.++...+ .....+|+|||||.|.++..+++.
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~ 112 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV 112 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh
Confidence 4555666 666789999999999999998875
No 203
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=93.16 E-value=0.033 Score=41.38 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=48.6
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
.++.|+..|... +++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.++.+.
T Consensus 53 ~~~~iL~~l~~~---~~~t~~ela~~l~i-s~~----tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 53 AKMRALAILSAK---DGLPIGTLGIFAVV-EQS----TLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC-Chh----HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345578888876 48999999999999 777 999999999999999986210 0112356666655443
No 204
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=93.16 E-value=0.082 Score=44.80 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 183 VINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 183 ~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.+..++.... |....+|+|+|||+|.++.+++...
T Consensus 191 la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~ 225 (354)
T 3tma_A 191 LAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTL 225 (354)
T ss_dssp HHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhh
Confidence 4455666667 8778899999999999999998865
No 205
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=93.14 E-value=0.23 Score=37.02 Aligned_cols=67 Identities=12% Similarity=0.186 Sum_probs=46.9
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
.++.|...|...|. +++|..+||+.+++ ++. .+.++++.|...|++.+.... .+. .+.+|+.++.+.
T Consensus 47 ~q~~vL~~l~~~~~-~~~t~~eLa~~l~~-~~~----tvs~~l~~Le~~Glv~r~~~~-~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 47 QQYNTLRLLRSVHP-EGMATLQIADRLIS-RAP----DITRLIDRLDDRGLVLRTRKP-ENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHTT-SCEEHHHHHHHC----CT----HHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCcCHHHHHHHHCC-Chh----hHHHHHHHHHHCCCEeecCCC-CCCCeeEeEECHHHHHHH
Confidence 34556777777521 48999999999999 887 999999999999999986311 122 366777766554
No 206
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=93.08 E-value=0.056 Score=41.95 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=21.3
Q ss_pred CCeEEEecCCccHHHHHHHhhCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..+|||||||.|..+..+++.+|
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~ 79 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAIS 79 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSC
T ss_pred CCEEEEEcCCccHHHHHHHHhCC
Confidence 57999999999999999999887
No 207
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=93.04 E-value=0.051 Score=37.80 Aligned_cols=50 Identities=30% Similarity=0.363 Sum_probs=39.0
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+..|...|.+. +++|+.||++.++. ++.-+..-+.++|+-|...|++.+.
T Consensus 37 e~~VL~~L~~~---~~~t~~eL~~~l~~-~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 37 ELIVMRVIWSL---GEARVDEIYAQIPQ-ELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CSHHHHHHHHH---SCEEHHHHHHTCCG-GGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHhc-ccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 34567777775 48999999999986 4211233799999999999999987
No 208
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=93.03 E-value=0.12 Score=43.31 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=18.8
Q ss_pred CCeEEEecCCccHHHHHHHhh
Q 036971 197 ITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~ 217 (221)
..+|+|||||+|.++..++++
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~ 59 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKH 59 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHT
T ss_pred CCEEEEecCccHHHHHHHHHC
Confidence 479999999999999988875
No 209
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=93.03 E-value=0.069 Score=42.13 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=21.9
Q ss_pred CCeEEEecCCccHHHHHHHhhCCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
..+|||||||.|..+..+++.+|+
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~ 78 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPE 78 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTT
T ss_pred CCEEEEecCCCcHHHHHHHHHCCC
Confidence 579999999999999999999874
No 210
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=93.02 E-value=0.039 Score=40.06 Aligned_cols=64 Identities=11% Similarity=0.013 Sum_probs=47.7
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
++.++..|... +++|..+||+.+++ ++. .+.++++.|...|++...... .+. .+.+|+.+..+.
T Consensus 31 ~~~iL~~l~~~---~~~t~~~la~~l~~-s~~----~vs~~l~~Le~~gli~r~~~~-~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 31 QYLYLVRVCEN---PGIIQEKIAELIKV-DRT----TAARAIKRLEEQGFIYRQEDA-SNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEECS-SCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC---cCcCHHHHHHHHCC-CHh----HHHHHHHHHHHCCCEEeecCC-CCCceeeeEEChhHHHHH
Confidence 34467777776 48999999999999 877 999999999999999986311 111 266666665444
No 211
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=93.02 E-value=0.086 Score=42.16 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=23.2
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.+++.++ -....+|+|+|||+|.++..+++.
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~ 72 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLL 72 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHH
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHH
Confidence 3444444 234579999999999999999886
No 212
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=92.93 E-value=0.033 Score=44.86 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=50.9
Q ss_pred HHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCC-----Ccceeccc
Q 036971 32 PAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHG-----VRLYSLAP 106 (221)
Q Consensus 32 ~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~-----~~~y~lt~ 106 (221)
..+|.--.++.|+..|.. +++++.+||+.+|+ .+. .+.+.|+.|...|++......+. .-.|++++
T Consensus 6 lkaL~~~~R~~IL~~L~~----g~~s~~ELa~~lgl-S~s----tVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~ 76 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC----MECYFSLLSSKVSV-SST----AVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISI 76 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCC-CHH----HHHHHHHHHHHTTSEEEEEECC-----CEEEEEECC
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEcc
Confidence 345555567778888886 59999999999999 776 99999999999999998211111 12488777
Q ss_pred cc
Q 036971 107 VA 108 (221)
Q Consensus 107 ~s 108 (221)
..
T Consensus 77 ~~ 78 (232)
T 2qlz_A 77 AK 78 (232)
T ss_dssp CE
T ss_pred ch
Confidence 54
No 213
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=92.91 E-value=0.11 Score=40.53 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=17.3
Q ss_pred CCeEEEecCCccHHHHHHHh
Q 036971 197 ITRLVDVGGGLGITLSDHNF 216 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~ 216 (221)
..+|+|||||.|.++..+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~ 67 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKI 67 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTC
T ss_pred CCcEEEeCCCCCHHHHHHHH
Confidence 57999999999999887754
No 214
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=92.90 E-value=0.04 Score=41.04 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=48.5
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
++.|...|... +++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.++.+.
T Consensus 55 q~~vL~~l~~~---~~~t~~eLa~~l~~-~~~----~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 55 KLRLLSSLSAY---GELTVGQLATLGVM-EQS----TTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence 44577788776 48999999999999 877 999999999999999986311 0112366776666544
No 215
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=92.90 E-value=0.062 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.4
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..++|+|||||.|..+.++++..|
T Consensus 83 ~~~~VLdiG~G~G~~~~~l~~~~~ 106 (294)
T 3adn_A 83 HAKHVLIIGGGDGAMLREVTRHKN 106 (294)
T ss_dssp TCCEEEEESCTTCHHHHHHHTCTT
T ss_pred CCCEEEEEeCChhHHHHHHHhCCC
Confidence 468999999999999999998755
No 216
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=92.87 E-value=0.064 Score=37.11 Aligned_cols=53 Identities=23% Similarity=0.159 Sum_probs=41.0
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccccccc
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYY 111 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L 111 (221)
++.+..+||+.+++ +.. .|.|+|..|...|++......+.-+...+|+.++.+
T Consensus 35 ~~~s~~eLa~~l~l-~~s----tLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~ 87 (96)
T 2obp_A 35 TPWSLPKIAKRAQL-PMS----VLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAAL 87 (96)
T ss_dssp CCCBHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCC-chh----hHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHH
Confidence 58999999999999 776 999999999999999986432122345666666543
No 217
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=92.86 E-value=0.16 Score=40.44 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
+.++|||||||.|..+..+++..|
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~ 93 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIP 93 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC
Confidence 367999999999999999999887
No 218
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=92.83 E-value=0.14 Score=41.15 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCCeEEEecCCccHHHHHHHhhCCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
...+|+|||||.|.++..+++.+|+
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~ 109 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPE 109 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTT
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998764
No 219
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=92.82 E-value=0.044 Score=43.90 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.2
Q ss_pred CCCeEEEecCCccHHHHHHHhhCCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
...+|+|||||+|.++..+++++|+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~ 89 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNG 89 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCC
Confidence 3579999999999999999887653
No 220
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=92.80 E-value=0.078 Score=39.00 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=41.1
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.+..|.+.|.+. +++|..+||+.+|+ ++. .+.+.++.|...|++...
T Consensus 6 ~d~~il~~L~~~---~~~s~~ela~~lg~-s~~----tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKD---SRLSMRELGRKIKL-SPP----SVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHC---SCCCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCeEEE
Confidence 355678888886 58999999999999 877 999999999999999874
No 221
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=92.79 E-value=0.079 Score=41.93 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.3
Q ss_pred CCCeEEEecCCccHHHHHHHhhC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
...+|||||||+|.++..+++..
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~ 82 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAP 82 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSC
T ss_pred CCCeEEEEeccCCHHHHHHHhcC
Confidence 35799999999999999987643
No 222
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=92.77 E-value=0.19 Score=36.32 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=49.4
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
.++.|+..|...+ + |..+||+.+++ ++. .+.++++.|...|++.+.... .+. .+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~~---~-~~~~la~~l~~-~~~----tvs~~l~~Le~~Glv~r~~~~-~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEEP---R-SMVYLANRYFV-TQS----AITAAVDKLEAKGLVRRIRDS-KDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHSC---E-EHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCC---C-CHHHHHHHHCC-Chh----HHHHHHHHHHHCCCEEeccCC-CCCceEEEEECHHHHHHH
Confidence 3456788888863 5 99999999999 887 999999999999999986311 111 477888777554
No 223
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=92.76 E-value=0.04 Score=40.92 Aligned_cols=64 Identities=9% Similarity=0.045 Sum_probs=47.4
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCC--Ccceeccccccccc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHG--VRLYSLAPVAKYYV 112 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~--~~~y~lt~~s~~L~ 112 (221)
..|...|... +++|..+||+.+++ ++. .+.++++.|...|++.+.....+ .-.+.+|+.++.+.
T Consensus 53 ~~vL~~l~~~---~~~t~~eLa~~l~~-~~~----tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE---DGINQESLSDYLKI-DKG----TTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS---CSEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 3457777776 58999999999999 887 99999999999999998631100 11366676666544
No 224
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=92.74 E-value=0.12 Score=44.67 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=27.0
Q ss_pred cCchHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 164 TDSRFNEVFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 164 ~~p~~~~~F~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
++..+...|.+|+... ...+. .++|||||||+|.++.-.+++
T Consensus 63 ~D~~Rt~aY~~Ai~~~--------~~~~~----~k~VLDvG~GtGiLs~~Aa~a 104 (376)
T 4hc4_A 63 ADRVRTDAYRLGILRN--------WAALR----GKTVLDVGAGTGILSIFCAQA 104 (376)
T ss_dssp HCHHHHHHHHHHHHTT--------HHHHT----TCEEEEETCTTSHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC--------HHhcC----CCEEEEeCCCccHHHHHHHHh
Confidence 3555566666665321 11223 478999999999998766654
No 225
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=92.74 E-value=0.045 Score=43.36 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=44.6
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccccc
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYV 112 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~ 112 (221)
++++..+||+.+++ ++. .+.+.++-|...|++.+. ....+.+|+.++.+.
T Consensus 19 ~~~~~~~lA~~l~v-s~~----tvs~~l~~Le~~GlV~r~----~~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQV-SPP----AVTEMMKKLLAEELLIKD----KKAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE----TTTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC-Chh----HHHHHHHHHHHCCCEEEe----cCCCeEECHHHHHHH
Confidence 68999999999999 777 999999999999999997 467899999887554
No 226
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=92.73 E-value=0.079 Score=39.18 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=40.8
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.+..|...|... +++|..+||+.+|+ ++. .+.+.++.|...|++...
T Consensus 8 ~~~~iL~~L~~~---~~~s~~ela~~lg~-s~~----tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAAD---GRATLSELATRAGL-SVS----AVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEE
Confidence 355677888876 58999999999999 877 999999999999999865
No 227
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=92.72 E-value=0.068 Score=41.95 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=21.7
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
+....+|+|||||.|.++..+++.+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~ 95 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIV 95 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHH
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHh
Confidence 5556799999999999999998874
No 228
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=92.72 E-value=0.066 Score=45.16 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.9
Q ss_pred CeEEEecCCccHHHHHHHhhCCCC
Q 036971 198 TRLVDVGGGLGITLSDHNFQIPSY 221 (221)
Q Consensus 198 ~~vvDVGGG~G~~~~~l~~~~P~l 221 (221)
.+|||||||.|.++..+++.+|+.
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~ 114 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQS 114 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCc
Confidence 499999999999999999999863
No 229
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=92.70 E-value=0.059 Score=40.55 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=48.3
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
.++.|+..|...+ +++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.++.+.
T Consensus 54 ~q~~vL~~L~~~~--~~~t~~eLa~~l~i-~~~----tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 54 THWVTLHNIHQLP--PDQSQIQLAKAIGI-EQP----SLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHHSC--SSEEHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCC-CHh----hHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 3455677787733 57999999999999 877 999999999999999986211 0012366777666544
No 230
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=92.70 E-value=0.072 Score=38.64 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=45.5
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
.+..|...|... + +|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.+..+.
T Consensus 39 ~~~~iL~~l~~~---~-~t~~eLa~~l~~-s~~----tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 39 TQEHILMLLSEE---S-LTNSELARRLNV-SQA----AVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHTTC---C-CCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHhC---C-CCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 445566777774 4 999999999999 877 999999999999999986210 0112466666655443
No 231
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=92.70 E-value=0.069 Score=42.88 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
...+|||||||.|..+..+++.+|
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~ 86 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELP 86 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSC
T ss_pred CCCEEEEecCCchHHHHHHHHhCC
Confidence 368999999999999999999987
No 232
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=92.67 E-value=0.1 Score=41.05 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=49.4
Q ss_pred HHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC----CCCcceeccccc
Q 036971 33 AVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST----HGVRLYSLAPVA 108 (221)
Q Consensus 33 ~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~----~~~~~y~lt~~s 108 (221)
.+|..-.++.|...|.. +++++.+||+.+++ ++. .+.+.|+.|...|++...... +..-.|++|+-.
T Consensus 10 kaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~i-s~s----tvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK----RPYFVSELSRELGV-GQK----AVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 34444556667777765 59999999999999 777 999999999999999986321 112247766644
No 233
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=92.61 E-value=0.088 Score=38.16 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=36.5
Q ss_pred hhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 43 VLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 43 lfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++..|.... +++|..+||+.+|+ ++. .+.++++.|...|++...
T Consensus 31 il~~L~~~~--~~~t~~ela~~l~~-~~s----tvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 31 VYAILYLSD--KPLTISDIMEELKI-SKG----NVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHCS--SCEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcC--CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEE
Confidence 455554222 58999999999999 777 999999999999999986
No 234
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=92.61 E-value=0.18 Score=44.84 Aligned_cols=32 Identities=22% Similarity=0.113 Sum_probs=24.3
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
..+++.++ .....+|+|||||.|.++..+++.
T Consensus 148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~~ 179 (480)
T 3b3j_A 148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA 179 (480)
T ss_dssp HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHHT
T ss_pred HHHHHhhh-hcCCCEEEEecCcccHHHHHHHHc
Confidence 44555555 445579999999999999988763
No 235
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=92.60 E-value=0.14 Score=43.82 Aligned_cols=25 Identities=24% Similarity=0.117 Sum_probs=21.2
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.....+|||||||+|.++..++++.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g 85 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG 85 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC
Confidence 4456899999999999999998763
No 236
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=92.56 E-value=0.12 Score=38.22 Aligned_cols=64 Identities=22% Similarity=0.137 Sum_probs=47.5
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
+.+.-.|...+ ++.+..+||+.+++ ++. .+.++++.|...|++.+.... .+. ...+|+.++.+.
T Consensus 34 ~~vL~~L~~~~--~~~~~~eLa~~l~~-~~~----tvs~~v~~Le~~GlV~R~~~~-~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 34 WVTLYNINRLP--PEQSQIQLAKAIGI-EQP----SLVRTLDQLEEKGLITRHTSA-NDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHSC--TTSCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEEECS-SCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHcC--CCCcHHHHHHHHCc-CHH----HHHHHHHHHHhCCCeEeecCC-CCCcchhhhcCHHHHHHH
Confidence 33555666654 46888999999999 887 999999999999999986321 122 367777776555
No 237
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=92.54 E-value=0.14 Score=37.88 Aligned_cols=65 Identities=11% Similarity=0.089 Sum_probs=44.2
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLA 105 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt 105 (221)
.+.-|++.|...+ ++.|++||.+.+.-..|..+..-+.|.|+.|+..|++.+....++..+|..+
T Consensus 23 qR~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 23 QRHAILEYLVNSM--AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp HHHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred HHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence 4455788888754 6899999999983211111223799999999999999987422123347654
No 238
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=92.52 E-value=0.075 Score=40.85 Aligned_cols=25 Identities=12% Similarity=-0.011 Sum_probs=21.5
Q ss_pred CCCCeEEEecCCccHHHHHHHhhCC
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
....+|+|||||.|.++..+++..+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~ 65 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF 65 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC
Confidence 3457999999999999999988765
No 239
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=92.42 E-value=0.16 Score=40.20 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=20.3
Q ss_pred CeEEEecCCccHHHHHHHhhCC
Q 036971 198 TRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 198 ~~vvDVGGG~G~~~~~l~~~~P 219 (221)
.+|||||||.|..+..+++.+|
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~ 79 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLA 79 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSC
T ss_pred CCEEEEcCCchHHHHHHHHhCC
Confidence 4999999999999999999876
No 240
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=92.36 E-value=0.067 Score=43.58 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.6
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|||||||.|.++..+++.
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~ 141 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL 141 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT
T ss_pred CCCcEEEECCCCCHHHHHHHHC
Confidence 4679999999999999998876
No 241
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=92.36 E-value=0.13 Score=42.38 Aligned_cols=31 Identities=26% Similarity=0.059 Sum_probs=23.2
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.+.+... +....+|||||||+|.++..+++.
T Consensus 73 ~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~ 103 (276)
T 2wa2_A 73 WIDERGG-VELKGTVVDLGCGRGSWSYYAASQ 103 (276)
T ss_dssp HHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS
T ss_pred HHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc
Confidence 3444422 555679999999999999888764
No 242
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=92.35 E-value=0.084 Score=41.37 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=21.0
Q ss_pred CCeEEEecCCccHHHHHHHhhCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..+|||||||.|..+..+++.+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~ 81 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQ 81 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSC
T ss_pred CCEEEEECCCCCHHHHHHHHhCC
Confidence 57999999999999999999765
No 243
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=92.34 E-value=0.08 Score=42.48 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=21.4
Q ss_pred CCeEEEecCCccHHHHHHHhhCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
.++|||||||.|..+..+++.+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~ 83 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALP 83 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSC
T ss_pred cCEEEEeeCCcCHHHHHHHHhCC
Confidence 57999999999999999999886
No 244
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=92.34 E-value=0.13 Score=42.04 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=20.3
Q ss_pred CCCCCeEEEecCCccHHHHHHHhh
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+....+|||||||+|.++..+++.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~ 95 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR 95 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc
Confidence 555679999999999999888764
No 245
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=92.34 E-value=0.039 Score=40.57 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=47.7
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
.++.|...|... +++|..+||+.+++ ++. .+.++++.|...|++++.... ...-.+.+|+.++.+.
T Consensus 42 ~q~~iL~~l~~~---~~~~~~eLa~~l~~-~~~----~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 42 SQYLVMLTLWEE---NPQTLNSIGRHLDL-SSN----TLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHTC-CHH----HHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 345567788776 58999999999999 877 999999999999999986211 0112366777666544
No 246
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=92.32 E-value=0.067 Score=42.40 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.0
Q ss_pred CCCeEEEecCCccHHHHHHHhhC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
...+|||||||.|.++..+++..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~ 101 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL 101 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT
T ss_pred CCCEEEEECCCCCHHHHHHHHhc
Confidence 46799999999999999987764
No 247
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=92.32 E-value=0.12 Score=43.19 Aligned_cols=30 Identities=10% Similarity=-0.082 Sum_probs=24.4
Q ss_pred HhcCCCCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 189 ESYKGFQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 189 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..++ .....+|+|+|||.|..+..+++.++
T Consensus 112 ~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~ 141 (315)
T 1ixk_A 112 VALD-PKPGEIVADMAAAPGGKTSYLAQLMR 141 (315)
T ss_dssp HHHC-CCTTCEEEECCSSCSHHHHHHHHHTT
T ss_pred HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhC
Confidence 3444 55567999999999999999998765
No 248
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=92.30 E-value=0.14 Score=39.28 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.0
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|+|||||.|.++..+++.
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~ 81 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKL 81 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT
T ss_pred CCCEEEEECCCCCHHHHHHHHC
Confidence 4579999999999999997763
No 249
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=92.28 E-value=0.06 Score=38.79 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=49.1
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCC--CCcceeccccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH--GVRLYSLAPVAKYYV 112 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~--~~~~y~lt~~s~~L~ 112 (221)
.+..++..|...++ +++|..+||+.+++ ++. .+.++++.|...|++.+..... ..-.+.+|+.++.+.
T Consensus 32 ~~~~vL~~l~~~~~-~~~t~~ela~~l~~-~~~----tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQQ-DGLTQNDIAKALQR-TGP----TVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHSTT-TCEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCcCHHHHHHHhCC-Ccc----cHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence 34556777777532 38999999999999 877 9999999999999999863110 012356666666544
No 250
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=92.24 E-value=0.12 Score=39.91 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=19.1
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHH
Q 036971 187 IVESYKGFQNITRLVDVGGGLGITLSDH 214 (221)
Q Consensus 187 ~l~~~~~~~~~~~vvDVGGG~G~~~~~l 214 (221)
+++.+. ....+|+|||||.|.++..+
T Consensus 29 ~l~~~~--~~~~~vLdiG~G~G~~~~~l 54 (211)
T 2gs9_A 29 ALKGLL--PPGESLLEVGAGTGYWLRRL 54 (211)
T ss_dssp HHHTTC--CCCSEEEEETCTTCHHHHHC
T ss_pred HHHHhc--CCCCeEEEECCCCCHhHHhC
Confidence 455544 25679999999999987654
No 251
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=92.24 E-value=0.099 Score=39.22 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=40.9
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.+..|.+.|.+. +++|..|||+++|+ ++. .+.+.++.|...|++...
T Consensus 11 ~~~~il~~L~~~---~~~s~~ela~~lg~-s~~----tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 11 TDIKILQVLQEN---GRLTNVELSERVAL-SPS----PCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEeee
Confidence 345678888886 58999999999999 877 899999999999999974
No 252
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=92.22 E-value=0.11 Score=38.49 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=41.1
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.+..|...|.+. +++|..+||+.+|+ ++. .+.+.++.|...|++...
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg~-s~~----tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILNT-TRQ----RIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTTS-CHH----HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEE
Confidence 455688888886 58999999999999 877 899999999999999864
No 253
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=92.21 E-value=0.2 Score=41.70 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=24.4
Q ss_pred HHHHHhcCCCC-CCCeEEEecCCccHHHHHHHhh
Q 036971 185 NKIVESYKGFQ-NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 185 ~~~l~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
..+++.+. .. ...+++|||||+|.++..+++.
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~ 106 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN 106 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC
Confidence 34566666 43 3479999999999999888775
No 254
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=92.18 E-value=0.068 Score=39.46 Aligned_cols=47 Identities=23% Similarity=0.259 Sum_probs=41.3
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.+..|...|.+. ++++..+||+.+|+ ++. .+.+.++.|...|++...
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg~-s~~----tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIRI-PKA----TLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCcEEEE
Confidence 456788888876 58999999999999 887 999999999999999874
No 255
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=92.17 E-value=0.16 Score=36.82 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=45.3
Q ss_pred HHHhhChhhHHHhcCCCCCCCHHHHHhhC-----CCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceec
Q 036971 37 AVVNLDVLDIINKAGPGAELSASEIASQI-----PTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSL 104 (221)
Q Consensus 37 ~av~lglfd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~l 104 (221)
+--+.-|++.|...+ ++.|++||.+.+ ++ +.. -+.|.|+.|+..|++.+....++..+|..
T Consensus 10 T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i-s~~----TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLD--DFRSAQELHDELRRRGENI-GLT----TVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCC-CHH----HHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC-CHh----hHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 445667888888764 689999999998 55 444 79999999999999998743212335654
No 256
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=92.13 E-value=0.08 Score=40.60 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=19.3
Q ss_pred CCeEEEecCCccHHHHHHHhhC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+|||||||.|.++..+++..
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~ 63 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLG 63 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTT
T ss_pred CCeEEEecCCCCHHHHHHHhcC
Confidence 4689999999999999998763
No 257
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=92.12 E-value=0.1 Score=41.45 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=21.3
Q ss_pred CCeEEEecCCccHHHHHHHhhCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..+|||||||.|..+..+++.+|
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~ 83 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALP 83 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSC
T ss_pred cCEEEEEeCCCCHHHHHHHHhCC
Confidence 57999999999999999999876
No 258
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=91.98 E-value=0.089 Score=41.36 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.4
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|||||||.|.++..+++.
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~ 69 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ 69 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHc
Confidence 4579999999999999998875
No 259
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=91.94 E-value=0.11 Score=40.96 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.7
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|||||||.|.++..+++.
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~ 74 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT 74 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT
T ss_pred CCCeEEEEcCCCCHHHHHHHHc
Confidence 4579999999999999999876
No 260
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=91.90 E-value=0.1 Score=41.93 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCeEEEecCCccHHHHHHHhhCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
.++|||||||.|..+..+++.+|
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~ 102 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIP 102 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSC
T ss_pred cCEEEEeCCCcCHHHHHHHHhCC
Confidence 57999999999999999999987
No 261
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=91.89 E-value=0.066 Score=35.35 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=37.9
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+..|.+.|... +++|+.||++.++. ++.-+..-+.++|+.|...|++.+.
T Consensus 11 e~~vL~~L~~~---~~~t~~ei~~~l~~-~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 11 ELEVMKVIWKH---SSINTNEVIKELSK-TSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHTS---SSEEHHHHHHHHHH-HSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHHhh-cCCccHHHHHHHHHHHHHCCCeEEE
Confidence 45566777764 58999999999974 2111123899999999999999987
No 262
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=91.89 E-value=0.054 Score=38.91 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=47.8
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
+..+...|....+ +++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.++.+.
T Consensus 39 q~~vL~~l~~~~~-~~~t~~eLa~~l~~-~~~----tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 39 EFAVLTYISENKE-KEYYLKDIINHLNY-KQP----QVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHTCC-SEEEHHHHHHHSSS-HHH----HHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHHhccC-CCcCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 3446666766521 37999999999999 776 999999999999999985211 0122366777766554
No 263
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=91.82 E-value=0.066 Score=40.75 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=47.6
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
++.|+..|...++.+++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.++.+.
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i-s~~----tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAI-SGP----STSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC-CSG----GGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 4557888887641013999999999999 887 999999999999999985210 0011366666665444
No 264
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=91.80 E-value=0.19 Score=38.58 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.0
Q ss_pred CCCeEEEecCCccHHHHHHHhhC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
...+|+|||||.|.++..+++..
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~ 71 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLG 71 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT
T ss_pred CcCEEEEeeCCCCHHHHHHHHcC
Confidence 45799999999999999998764
No 265
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=91.75 E-value=0.065 Score=42.04 Aligned_cols=65 Identities=17% Similarity=-0.067 Sum_probs=49.0
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
+..|...|... +++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.++.+.
T Consensus 50 q~~iL~~L~~~---~~~t~~eLa~~l~i-~~s----tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 50 EHHILWIAYQL---NGASISEIAKFGVM-HVS----TAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHH---TSEEHHHHHHHTTC-CHH----HHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 34467777776 48999999999999 877 999999999999999986311 0012577888877554
No 266
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=91.69 E-value=0.1 Score=43.40 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.7
Q ss_pred CCCCeEEEecCCccHHHHHHHhhCC
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
....+|+|||||.|..+..+++..|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~ 118 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGT 118 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCC
Confidence 3468999999999999999998755
No 267
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=91.63 E-value=0.19 Score=42.04 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..++..++ .....+|||||||+|.++..+++..
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~ 127 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAV 127 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHh
Confidence 34555555 5567899999999999999999873
No 268
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=91.60 E-value=0.16 Score=41.64 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=19.5
Q ss_pred CCCeEEEecCCccHHHHHHHhhC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
...+|+|||||+|.++..+++..
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~ 101 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAG 101 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTT
T ss_pred CCCeEEEecccccHHHHHHHHcC
Confidence 45799999999999999887753
No 269
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=91.59 E-value=0.13 Score=40.98 Aligned_cols=21 Identities=19% Similarity=0.028 Sum_probs=19.2
Q ss_pred CCeEEEecCCccHHHHHHHhh
Q 036971 197 ITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~ 217 (221)
..+|||||||+|..+..+++.
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~ 102 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDL 102 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEEeCCCCHHHHHHHHh
Confidence 469999999999999999886
No 270
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=91.56 E-value=0.097 Score=42.13 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=24.4
Q ss_pred HHHhcCC--CCCCCeEEEecCCccHHHHHHHhh
Q 036971 187 IVESYKG--FQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 187 ~l~~~~~--~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+++.++. .+...+|+|||||+|.++..+++.
T Consensus 66 i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~ 98 (233)
T 4df3_A 66 LLKGLIELPVKEGDRILYLGIASGTTASHMSDI 98 (233)
T ss_dssp HHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred HHhchhhcCCCCCCEEEEecCcCCHHHHHHHHH
Confidence 4444432 677789999999999999999875
No 271
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=91.53 E-value=0.11 Score=38.55 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=41.0
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.+..|...|.+. +++|..+||+++|+ ++. .+.+.++.|...|++...
T Consensus 9 ~d~~il~~L~~~---~~~s~~ela~~lg~-s~~----tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 9 LDRGILEALMGN---ARTAYAELAKQFGV-SPE----TIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHTS-CHH----HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHcCCcceE
Confidence 355678888886 58999999999999 887 999999999999999974
No 272
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=91.51 E-value=0.13 Score=39.12 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=41.1
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.+..|...|..+ +++|..+||+.+|+ ++. .+.+.++.|...|++...
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lgl-S~~----tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLKK-PES----TIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEee
Confidence 455678889886 58999999999999 877 999999999999999864
No 273
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=91.48 E-value=0.12 Score=39.99 Aligned_cols=22 Identities=14% Similarity=-0.096 Sum_probs=18.8
Q ss_pred CCeEEEecCCccHHHHHHHhhC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+|||+|||+|.++..+++..
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~ 75 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQ 75 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTT
T ss_pred CCeEEEcCCccCHHHHHHHHcc
Confidence 4689999999999999877654
No 274
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=91.44 E-value=0.12 Score=40.90 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCeEEEecCCccHHHHHHHhhCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..+|||||||.|..+..+++.+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~ 95 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLP 95 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSC
T ss_pred CCEEEEecCCCCHHHHHHHHhCC
Confidence 57999999999999999999887
No 275
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=91.41 E-value=0.21 Score=42.89 Aligned_cols=32 Identities=13% Similarity=-0.024 Sum_probs=24.2
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.+++.++ .....+|+|+|||+|.++..+++++
T Consensus 30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~ 61 (421)
T 2ih2_A 30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAH 61 (421)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHH
T ss_pred HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHh
Confidence 3444554 3345699999999999999999865
No 276
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=91.34 E-value=0.13 Score=39.17 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=18.3
Q ss_pred CCeEEEecCCccHHHHHHHhh
Q 036971 197 ITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~ 217 (221)
..+|+|+|||+|.++..+++.
T Consensus 45 ~~~vLDlgcG~G~~~~~~~~~ 65 (189)
T 3p9n_A 45 GLAVLDLYAGSGALGLEALSR 65 (189)
T ss_dssp TCEEEEETCTTCHHHHHHHHT
T ss_pred CCEEEEeCCCcCHHHHHHHHC
Confidence 579999999999999987764
No 277
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=91.33 E-value=0.12 Score=43.76 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=19.2
Q ss_pred CCeEEEecCCccHHHHHHHhh
Q 036971 197 ITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~ 217 (221)
..+|||||||.|.++..++++
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~ 87 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKA 87 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHT
T ss_pred CCEEEEEeccchHHHHHHHHC
Confidence 579999999999999998876
No 278
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=91.27 E-value=0.099 Score=43.66 Aligned_cols=24 Identities=21% Similarity=0.043 Sum_probs=20.6
Q ss_pred CCCCCeEEEecCCccHHHHHHHhh
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+....+|||||||+|.++..+++.
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~ 103 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL 103 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc
Confidence 455679999999999999988875
No 279
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=91.25 E-value=0.2 Score=46.66 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=32.6
Q ss_pred hhhhhccCchHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHH
Q 036971 158 FYDYLGTDSRFNEVFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSD 213 (221)
Q Consensus 158 ~~~~l~~~p~~~~~F~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~ 213 (221)
.||.+.+++-+.+.|.+|+... +.+.++.-...+.|+|||||+|.++..
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~ 426 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTK 426 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHH
T ss_pred HHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHH
Confidence 5777778888888888887542 111222011246899999999999754
No 280
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=91.24 E-value=0.16 Score=39.51 Aligned_cols=51 Identities=12% Similarity=0.247 Sum_probs=43.2
Q ss_pred HHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 34 VFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 34 aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++....+..|...|.+ +++|..+||+.+|+ ++. .+.+.++.|...|++...
T Consensus 16 ~l~d~~~~~IL~~L~~----~~~s~~eLA~~lgl-S~s----tv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILKLLRN----KEMTISQLSEILGK-TPQ----TIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEE
Confidence 3344566778888884 58999999999999 877 999999999999999986
No 281
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=91.19 E-value=0.16 Score=34.68 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=38.4
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+.|+..|..+|. .+++..+||+++++ +.. -+.++|+.|...|++.+.
T Consensus 23 ~~Vl~~I~~~g~-~gi~qkeLa~~~~l-~~~----tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDAGN-KGIWSRDVRYKSNL-PLT----EINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHCT-TCEEHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCC-CCcCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEEe
Confidence 345556666432 37999999999999 877 899999999999999965
No 282
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=91.18 E-value=0.07 Score=44.07 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=21.6
Q ss_pred CCCCCeEEEecCCccHHHHHHH-hhCCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHN-FQIPS 220 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~-~~~P~ 220 (221)
.....+|+|||||.|.++..++ +.+|+
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~ 143 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPG 143 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTT
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCC
Confidence 3456899999999999999885 55654
No 283
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=91.18 E-value=0.46 Score=39.57 Aligned_cols=27 Identities=22% Similarity=0.102 Sum_probs=20.8
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
.....+|+|||||.|.++..++.+.|+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~g 146 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYG 146 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTC
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccC
Confidence 566789999999999877666555553
No 284
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=91.16 E-value=0.19 Score=46.37 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=34.1
Q ss_pred hhhhhccCchHHHHHHHHHhhhhHHHHHHHHHhcCC---CCCCCeEEEecCCccHHHHHHH
Q 036971 158 FYDYLGTDSRFNEVFNNGMIGQTSFVINKIVESYKG---FQNITRLVDVGGGLGITLSDHN 215 (221)
Q Consensus 158 ~~~~l~~~p~~~~~F~~aM~~~~~~~~~~~l~~~~~---~~~~~~vvDVGGG~G~~~~~l~ 215 (221)
.||.++++|-+.+.|.+|+.. .+.+..+. -.....|+|||+|+|.+....+
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al 376 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASL 376 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHH
Confidence 578888888888888888753 12222210 2234689999999999854443
No 285
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.12 E-value=0.14 Score=35.00 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=32.9
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+++|..|||+.+|+ ++. .+.+.|+.|...|++...
T Consensus 35 ~~~t~~ela~~l~i-s~~----tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 35 KPITSEELADIFKL-SKT----TVENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCeEee
Confidence 58999999999999 777 899999999999999986
No 286
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=91.08 E-value=0.12 Score=43.88 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
...++|+|||||.|..+..+++..|.
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~ 144 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASI 144 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTC
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCC
Confidence 35689999999999999999987653
No 287
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=91.02 E-value=0.11 Score=42.56 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=21.1
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..++|+|||||.|..+.++++.+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~ 98 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPS 98 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTT
T ss_pred CCCEEEEECCchHHHHHHHHhCCC
Confidence 368999999999999999988755
No 288
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=90.97 E-value=0.27 Score=38.36 Aligned_cols=25 Identities=24% Similarity=0.378 Sum_probs=21.5
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.....+|+|||||.|.++..+++..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~ 102 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKM 102 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHh
Confidence 4456799999999999999999876
No 289
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=90.96 E-value=0.097 Score=38.78 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=40.9
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.+..|.+.|.+. ++.|..+||+.+|+ ++. .+.+.++.|...|++...
T Consensus 8 ~~~~il~~L~~~---~~~s~~ela~~lg~-s~~----tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 8 IDKKIIKILQND---GKAPLREISKITGL-AES----TIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCS-CHH----HHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCeEEE
Confidence 355678888886 58999999999999 877 999999999999999874
No 290
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=90.92 E-value=0.13 Score=40.38 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=20.9
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHh
Q 036971 187 IVESYKGFQNITRLVDVGGGLGITLSDHNF 216 (221)
Q Consensus 187 ~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~ 216 (221)
++.... ++. .+|||||||.|.++..+++
T Consensus 59 ~~~~~~-~~~-~~vLDiGcG~G~~~~~l~~ 86 (235)
T 3lcc_A 59 LVDTSS-LPL-GRALVPGCGGGHDVVAMAS 86 (235)
T ss_dssp HHHTTC-SCC-EEEEEETCTTCHHHHHHCB
T ss_pred HHHhcC-CCC-CCEEEeCCCCCHHHHHHHh
Confidence 344444 444 5999999999999998865
No 291
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=90.89 E-value=0.13 Score=41.70 Aligned_cols=22 Identities=14% Similarity=-0.115 Sum_probs=19.3
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|+|||||.|..+..|++.
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~ 89 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR 89 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT
T ss_pred CCCeEEEeCCCCcHHHHHHHHC
Confidence 4579999999999999998875
No 292
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=90.87 E-value=0.19 Score=39.42 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=20.8
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.....+|+|||||.|.++..+++..
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~ 106 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYI 106 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHhc
Confidence 4455799999999999999988754
No 293
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=90.86 E-value=0.13 Score=39.39 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.5
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|+|||||.|.++..+++.
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~ 72 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLL 72 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT
T ss_pred CCCEEEEEeCCccHHHHHHHHc
Confidence 4579999999999999998875
No 294
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=90.80 E-value=0.12 Score=31.95 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=41.3
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceee
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCC 92 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~ 92 (221)
+-.|.+.|..+| |-+.++.+|+..|+ +.+ -+..+|+-|...|++.-
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kygV-~kd----eV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYGV-EKQ----EVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHCC-CHH----HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhCC-CHH----HHHHHHHHHHHCCCeec
Confidence 456889999987 88999999999999 887 89999999999999875
No 295
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=90.76 E-value=0.16 Score=39.27 Aligned_cols=22 Identities=14% Similarity=-0.028 Sum_probs=18.9
Q ss_pred CCeEEEecCCccHHHHHHHhhC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+|+|+|||+|.++..++++.
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~ 76 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRY 76 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTT
T ss_pred CCeEEEeCCCcCHHHHHHHhcC
Confidence 4789999999999999877654
No 296
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=90.69 E-value=0.15 Score=41.65 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=22.8
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
+....+|+|+|||.|.++..+++.+|
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~ 142 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSK 142 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCC
Confidence 44568999999999999999999876
No 297
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=90.67 E-value=0.14 Score=40.42 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=19.6
Q ss_pred CCeEEEecCCccHHHHHHHhhC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+|+|||||.|.++..+++..
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~ 100 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTG 100 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTT
T ss_pred CCEEEECccccCHHHHHHHHcC
Confidence 5799999999999999998753
No 298
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=90.66 E-value=0.48 Score=31.04 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=38.8
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecc
Q 036971 46 IINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLA 105 (221)
Q Consensus 46 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt 105 (221)
.|.+. +..|+.+||+++|+ +-. .+.|+|--|...|.|..... .+-.|..+
T Consensus 23 ~L~~~---~~~Ta~~IAkkLg~-sK~----~vNr~LY~L~kkG~V~~~~~--~PP~W~~~ 72 (75)
T 1sfu_A 23 SLNTN---DYTTAISLSNRLKI-NKK----KINQQLYKLQKEDTVKMVPS--NPPKWFKN 72 (75)
T ss_dssp TSCTT---CEECHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEEECC--SSCEEEEC
T ss_pred hCCCC---cchHHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEecCCC--CCCCccCC
Confidence 55553 46999999999999 776 89999999999999988732 24455544
No 299
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=90.64 E-value=0.13 Score=39.12 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=41.2
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.+..|...|.+. +.++..|||+++|+ .+. .+.+-++.|...|++...
T Consensus 28 ~d~~IL~~L~~~---~~~s~~eLA~~lgl-S~~----tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQND---GKAPLREISKITGL-AES----TIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCeEee
Confidence 456788888886 58999999999999 887 899999999999999864
No 300
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=90.61 E-value=0.15 Score=40.98 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.5
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|||||||.|.++..+++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~ 75 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER 75 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT
T ss_pred CCCeEEEeCCCcCHHHHHHHHc
Confidence 4579999999999999998875
No 301
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=90.61 E-value=0.12 Score=43.34 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.4
Q ss_pred CCCeEEEecCCccHHHHHHHhhCCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
...+|+|||||.|..+.++++..|.
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~ 140 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSV 140 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTC
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCC
Confidence 3579999999999999999987653
No 302
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=90.59 E-value=0.15 Score=46.30 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.1
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|||||||.|.++..+++.
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ 87 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK 87 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT
T ss_pred CCCeEEEECCCCcHHHHHHHhC
Confidence 3568999999999999998875
No 303
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=90.56 E-value=0.13 Score=42.99 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.5
Q ss_pred CCCeEEEecCCccHHHHHHHhhCCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
...+|+|||||.|..+..+++..|.
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~ 101 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTV 101 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTC
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCC
Confidence 3579999999999999999987653
No 304
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=90.55 E-value=0.48 Score=34.33 Aligned_cols=67 Identities=9% Similarity=0.036 Sum_probs=41.8
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCCcceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGVRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~~~y~lt~~s~~L~ 112 (221)
+..+...|...++ +++|..+||+.+++ ++. .+.++++.|...|++.+.... ...-.+.+|+.++.+.
T Consensus 43 q~~vL~~l~~~~~-~~~t~~eLa~~l~~-~~~----~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 43 QGRMIGYIYENQE-SGIIQKDLAQFFGR-RGA----SITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHTT-TCCCHHHHHHC-----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCCCHHHHHHHHCC-Chh----HHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 3446777777521 48999999999999 887 999999999999999986210 0012356666666544
No 305
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=90.52 E-value=0.13 Score=42.31 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.6
Q ss_pred CCCCeEEEecCCccHHHHHHHhhCC
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
...++|+|||||.|..+.++++..|
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~ 101 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKS 101 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCC
Confidence 3468999999999999999988765
No 306
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=90.50 E-value=0.13 Score=42.59 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.7
Q ss_pred CCeEEEecCCccHHHHHHHhhCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..+|+|||||.|..+.++++..|
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~ 113 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDS 113 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTT
T ss_pred CCEEEEEcCCcCHHHHHHHhcCC
Confidence 57999999999999999998765
No 307
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=90.44 E-value=0.29 Score=39.59 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=19.4
Q ss_pred CCCCeEEEecCCccHHHHHHHhh
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
....+|||||||.|.++..+++.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~ 85 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA 85 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH
T ss_pred CCCCeEEEECCCCCHHHHHHHHC
Confidence 34579999999999999887765
No 308
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=90.43 E-value=0.13 Score=42.83 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.9
Q ss_pred CCCCeEEEecCCccHHHHHHHhhCC
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
...++|+|||||.|..+.++++..|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~ 118 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS 118 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC
Confidence 3568999999999999999998765
No 309
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=90.36 E-value=0.26 Score=42.16 Aligned_cols=26 Identities=15% Similarity=0.034 Sum_probs=22.7
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
|....+|+|+|||+|.++.++++..+
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~ 240 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRY 240 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCC
Confidence 44568999999999999999998776
No 310
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=90.32 E-value=0.058 Score=38.24 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=36.7
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCC----CCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIP----TKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g----~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..|...|... +++|..+||+.++ + .+. .+.++|+-|...|++.+.
T Consensus 13 ~~vL~~l~~~---~~~t~~ela~~l~~~~~~-s~~----tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 13 WEVMNIIWMK---KYASANNIIEEIQMQKDW-SPK----TIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHH---SSEEHHHHHHHHHHHCCC-CHH----HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhC---CCcCHHHHHHHHhccCCC-cHh----hHHHHHHHHHHCCCeEEE
Confidence 3455566654 5899999999999 4 454 899999999999999986
No 311
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=90.30 E-value=0.12 Score=37.57 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=39.6
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+..|...|... ++++..+||+.+|+ ++. .+.+.++.|...|++...
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg~-s~~----tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLGI-SET----AVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS-CHH----HHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEecc
Confidence 45577788775 48999999999999 887 999999999999999864
No 312
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=90.29 E-value=0.14 Score=38.56 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=41.5
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.+..|.+.|.++ +++|..+||+.+|+ .+. .+++-++.|...|++...
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg~-s~~----tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVGL-STT----PCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCeeec
Confidence 456788899887 59999999999999 887 999999999999999864
No 313
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=90.28 E-value=0.17 Score=39.31 Aligned_cols=42 Identities=24% Similarity=0.131 Sum_probs=36.1
Q ss_pred hHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 45 DIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 45 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+.+.+.| .|.|..|||+++|+ ... .+.+.|+.|...|++...
T Consensus 16 ~~~~~~g--~~~s~~eia~~lgl-~~~----tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 16 EFIEKNG--YPPSVREIARRFRI-TPR----GALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHS--SCCCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEECC
T ss_pred HHHHHhC--CCCCHHHHHHHcCC-CcH----HHHHHHHHHHHCCCEEec
Confidence 3556655 58999999999999 765 899999999999999986
No 314
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=90.26 E-value=0.2 Score=39.14 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=20.7
Q ss_pred CCCCCeEEEecCC-ccHHHHHHHhh
Q 036971 194 FQNITRLVDVGGG-LGITLSDHNFQ 217 (221)
Q Consensus 194 ~~~~~~vvDVGGG-~G~~~~~l~~~ 217 (221)
.....+|+||||| .|.++..+++.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~ 77 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKF 77 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHH
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHh
Confidence 3456899999999 99999998876
No 315
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=90.20 E-value=0.32 Score=40.17 Aligned_cols=36 Identities=17% Similarity=-0.044 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 182 FVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.-...+.+.|. +....+|||+|||.|.++.-.++..
T Consensus 77 fKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~ 112 (282)
T 3gcz_A 77 AKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLK 112 (282)
T ss_dssp HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTST
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc
Confidence 33445666775 7777899999999999999776543
No 316
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=90.13 E-value=0.12 Score=40.61 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=19.8
Q ss_pred CCCeEEEecCCccHHHHHHHhhC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
...+|+|||||.|.++..+++..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~ 59 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF 59 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC
Confidence 35799999999999999988764
No 317
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=90.10 E-value=0.14 Score=39.37 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=52.4
Q ss_pred HHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCC--CCcceecccccccccc
Q 036971 37 AVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH--GVRLYSLAPVAKYYVS 113 (221)
Q Consensus 37 ~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~--~~~~y~lt~~s~~L~~ 113 (221)
...+..|...|..... +++|..+||+.+++ ++. .+.++++.|...|++.+..... ..-.+.+|+.++.+..
T Consensus 40 t~~q~~vL~~L~~~~~-~~~t~~eLa~~l~i-s~~----tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLPE-EETTLNNIARKMGT-SKQ----NINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSCG-GGCCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhccC-CCcCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 3445667777875211 58999999999999 877 9999999999999999863210 1134788888876654
No 318
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=90.08 E-value=0.16 Score=43.56 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.5
Q ss_pred CCCeEEEecCCccHHHHHHHhhC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
...+|||||||.|.++..+++.+
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~ 105 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLV 105 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH
T ss_pred CCCEEEEecCccCHHHHHHHHHh
Confidence 35799999999999999998876
No 319
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=90.07 E-value=0.19 Score=41.09 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=22.0
Q ss_pred CCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
....+|+|+|||+|.++..+++..+.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~ 149 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA 149 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC
Confidence 34679999999999999999987653
No 320
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=89.97 E-value=0.15 Score=41.59 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=22.8
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
.....+|+|+|||.|..+..+++..++
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~ 107 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKN 107 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTT
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCC
Confidence 445679999999999999999987654
No 321
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=89.91 E-value=0.16 Score=41.75 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.3
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
...+|+|||||.|..+.++++. |
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~ 97 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-D 97 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-C
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-C
Confidence 3579999999999999999886 5
No 322
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=89.86 E-value=0.17 Score=42.45 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.6
Q ss_pred CCCeEEEecCCccHHHHHHHhhCCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
..++|+|||||.|..+..+++..|.
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~ 132 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESV 132 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTC
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCC
Confidence 3579999999999999999987653
No 323
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=89.76 E-value=0.25 Score=39.56 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHhh
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+....+|+|||||+|.++..+++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~ 97 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDI 97 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHH
Confidence 566789999999999999988765
No 324
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=89.63 E-value=0.21 Score=36.08 Aligned_cols=34 Identities=9% Similarity=0.130 Sum_probs=31.8
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..|..+||+.+++ ++. .+.+.++.|...|++...
T Consensus 51 ~ps~~~LA~~l~~-s~~----~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV-SAA----ECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS-CHH----HHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEE
Confidence 4799999999999 887 999999999999999986
No 325
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=89.62 E-value=0.32 Score=36.42 Aligned_cols=88 Identities=18% Similarity=0.130 Sum_probs=57.3
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCC-CCCCcchhhhHHHHHHHHhcCCceeeeccCC---CCc----ceeccccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIP-TKNPEGAAKMLDRVLGLLVSFNILCCSFSTH---GVR----LYSLAPVAKY 110 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g-~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~---~~~----~y~lt~~s~~ 110 (221)
.++.|+..|-... .+..|+++|++.++ + ... -+.|.|+.|+..|++++....+ ..| .|.+|+.++.
T Consensus 30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~l-S~a----TVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~ 103 (151)
T 3u1d_A 30 TRLDVLHQILAQP-DGVLSVEELLYRNPDE-TEA----NLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIA 103 (151)
T ss_dssp HHHHHHHHHHHST-TSCBCHHHHHHHCTTS-CHH----HHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHH
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHhcCCC-CHH----HHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHH
Confidence 4455555665532 14689999999998 8 665 8999999999999999752210 012 5888888875
Q ss_pred cccCCCCCChHHHHHHhcCccchhhhhhhHHHHh
Q 036971 111 YVSDQNGVSMRPYMNLSLDKVMMPGWFQLKDQIL 144 (221)
Q Consensus 111 L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 144 (221)
+..... .+. ..+.|..|.+.++
T Consensus 104 ~l~~y~--~la----------~~~alr~l~~~v~ 125 (151)
T 3u1d_A 104 LLRAVS--MYE----------EAAVWRSVYEQME 125 (151)
T ss_dssp HHHHTT--CST----------HHHHTHHHHHHSC
T ss_pred HHHHhH--HHh----------HHHHHHHHHHHhh
Confidence 543321 111 1245777777773
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=89.49 E-value=0.38 Score=35.73 Aligned_cols=62 Identities=24% Similarity=0.361 Sum_probs=45.5
Q ss_pred HHHhhChhhHHHhcCCCCCCCHHHHHhhC-----CCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecc
Q 036971 37 AVVNLDVLDIINKAGPGAELSASEIASQI-----PTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLA 105 (221)
Q Consensus 37 ~av~lglfd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt 105 (221)
+.-+.-|++.|...+ ++.|++||.+.+ ++ +.. -+.|.|+.|+..|++.+....++..+|..+
T Consensus 26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~i-s~a----TVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 92 (150)
T 2xig_A 26 SKQREEVVSVLYRSG--THLSPEEITHSIRQKDKNT-SIS----SVYRILNFLEKENFISVLETSKSGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTC-CHH----HHHHHHHHHHHTTSEEEEEETTTEEEEEES
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC-CHh----hHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence 445566888898764 699999999998 45 444 799999999999999987421122346653
No 327
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=89.39 E-value=0.31 Score=35.75 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=45.8
Q ss_pred HHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecc
Q 036971 37 AVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLA 105 (221)
Q Consensus 37 ~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt 105 (221)
+..+.-|++.|...+ ++.|++||.+.+.-+.|..+..-+.|.|+.|+..|++.+....++..+|...
T Consensus 13 T~qR~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVE--EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCS--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 345666788888765 6899999998883211221233789999999999999987421123456654
No 328
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=89.39 E-value=0.4 Score=39.52 Aligned_cols=33 Identities=21% Similarity=0.029 Sum_probs=24.8
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+.+.+. +....+|||+|||.|.++.-+++..
T Consensus 64 ~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~ 96 (277)
T 3evf_A 64 RWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQK 96 (277)
T ss_dssp HHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTST
T ss_pred HHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhc
Confidence 34555544 6667799999999999999776553
No 329
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=89.34 E-value=0.36 Score=41.73 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 183 VINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 183 ~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.+..++.... |.....|+|.+||+|.++++.+...
T Consensus 189 lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~ 223 (393)
T 3k0b_A 189 MAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIG 223 (393)
T ss_dssp HHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHh
Confidence 4455677777 8888899999999999998887643
No 330
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=89.32 E-value=0.36 Score=41.58 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 183 VINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 183 ~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.+..++.... |.....|+|++||+|.++++.+..
T Consensus 183 lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~ 216 (385)
T 3ldu_A 183 LAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMI 216 (385)
T ss_dssp HHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHH
T ss_pred HHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHH
Confidence 4455666777 887889999999999999988765
No 331
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=89.29 E-value=0.26 Score=38.36 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.6
Q ss_pred CCCCeEEEecCCccHHHHHHHhhC
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
....+|+|||||.|..+..+++.+
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~ 99 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMV 99 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHh
Confidence 445799999999999999998764
No 332
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=89.23 E-value=0.11 Score=41.94 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=14.9
Q ss_pred CCCeEEEecCCccHHHHHH
Q 036971 196 NITRLVDVGGGLGITLSDH 214 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l 214 (221)
...+|||||||.|.+...+
T Consensus 55 ~g~~vLDiGCG~G~~~~~~ 73 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLA 73 (263)
T ss_dssp CEEEEEESSCTTCCGGGTT
T ss_pred CCceEEEeCCCccHHHHHH
Confidence 3478999999999776543
No 333
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=88.98 E-value=0.18 Score=41.00 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=18.5
Q ss_pred CCCCCeEEEecCCccHHHHHHH
Q 036971 194 FQNITRLVDVGGGLGITLSDHN 215 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~ 215 (221)
+....+|+|||||.|.++..+.
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~ 124 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER 124 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT
T ss_pred CCCCCeEEEecCCccHHHHHhc
Confidence 4457899999999999988765
No 334
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=88.97 E-value=0.2 Score=41.63 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=17.0
Q ss_pred CCeEEEecCCccHHHHHHHhh
Q 036971 197 ITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~ 217 (221)
..+|||||||.|..+..+++.
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~ 69 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYG 69 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHT
T ss_pred CCeEEEEecCCcHhHHHHHhc
Confidence 579999999999877766553
No 335
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=88.92 E-value=0.27 Score=37.86 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=45.6
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCc-eeeeccCCCCcceeccccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNI-LCCSFSTHGVRLYSLAPVA 108 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gl-l~~~~~~~~~~~y~lt~~s 108 (221)
-...|.+.|.+.+ +++|..+||+.+|+ ..+ .++|-++.|...|+ +... .+.|.+.+..
T Consensus 22 R~~~Il~~L~~~~--~~~s~~eLa~~l~v-S~~----Ti~rdi~~L~~~G~~I~~~-----~~Gy~l~~~~ 80 (187)
T 1j5y_A 22 RLKSIVRILERSK--EPVSGAQLAEELSV-SRQ----VIVQDIAYLRSLGYNIVAT-----PRGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHCS--SCBCHHHHHHHHTS-CHH----HHHHHHHHHHHHTCCCEEE-----TTEEECCTTT
T ss_pred HHHHHHHHHHHcC--CCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCeEEEE-----CCEEEECCcc
Confidence 4456788888653 47999999999999 887 89999999999999 6653 4567766543
No 336
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=88.44 E-value=0.25 Score=36.23 Aligned_cols=35 Identities=9% Similarity=0.089 Sum_probs=32.3
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
...|.++||+++|+ ++. -+.++|+.|...|++...
T Consensus 50 ~~ps~~~LA~~~~~-s~~----~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 50 YFPTPNQLQEGMSI-SVE----ECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CSCCHHHHHTTSSS-CHH----HHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEE
Confidence 35899999999999 888 999999999999999985
No 337
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=88.32 E-value=0.24 Score=43.30 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=23.9
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.+++..+ .....+|+|+|||.|.++..+++.
T Consensus 277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~ 307 (433)
T 1uwv_A 277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ 307 (433)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT
T ss_pred HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh
Confidence 3444444 455679999999999999999875
No 338
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=88.29 E-value=0.58 Score=38.37 Aligned_cols=23 Identities=9% Similarity=-0.075 Sum_probs=17.6
Q ss_pred CCeEEEecCCccH----HHHHHHhhCC
Q 036971 197 ITRLVDVGGGLGI----TLSDHNFQIP 219 (221)
Q Consensus 197 ~~~vvDVGGG~G~----~~~~l~~~~P 219 (221)
..+|+|+|||+|. +++.+++.+|
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~ 132 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALG 132 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHC
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcc
Confidence 4689999999998 5556666544
No 339
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=88.29 E-value=0.22 Score=40.59 Aligned_cols=22 Identities=9% Similarity=-0.209 Sum_probs=19.6
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
..++|+|||||.|..+.++++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~ 93 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY 93 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS
T ss_pred CCCEEEEEeCCcCHHHHHHHhC
Confidence 4579999999999999998875
No 340
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=87.96 E-value=0.38 Score=42.23 Aligned_cols=51 Identities=14% Similarity=0.032 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 169 NEVFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 169 ~~~F~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
...|..............+....+ .....+|+|+|||.|..+..+++..|+
T Consensus 233 ~~~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~ 283 (450)
T 2yxl_A 233 SSAFNEGKIIVQEEASAVASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKN 283 (450)
T ss_dssp CHHHHTTSEEECCHHHHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTT
T ss_pred CchhhCceEEecCchhHHHHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCC
Confidence 345555443222222222333444 455679999999999999999988764
No 341
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=87.92 E-value=0.51 Score=40.69 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 182 FVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
..+..++.... |.....|+|.+||+|+++++.+..
T Consensus 181 ~LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~ 215 (384)
T 3ldg_A 181 NMAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMI 215 (384)
T ss_dssp HHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHH
Confidence 34455666777 888889999999999999888754
No 342
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=87.85 E-value=0.11 Score=38.25 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=41.1
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
+++|..+||+.+++ ++. .+.++++-|...|++++.... .+. ...+|+.++.+.
T Consensus 50 ~~~t~~eLa~~l~~-~~~----tvs~~v~~Le~~Glv~r~~~~-~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 50 GELPMSKIGERLMV-HPT----SVTNTVDRLVRSGLVAKRPNP-NDGRGTLATITDKGREVV 105 (147)
T ss_dssp GEEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEEECC-----CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC-CHH----HHHHHHHHHHhCCCEEEeecC-CcCceeEEEECHHHHHHH
Confidence 57999999999999 887 999999999999999986321 122 366777776554
No 343
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=87.43 E-value=0.47 Score=40.83 Aligned_cols=51 Identities=8% Similarity=0.162 Sum_probs=43.3
Q ss_pred HHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 35 FQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 35 L~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++..-+..|++.|.+. +++|..|||+.+|+ .+. -+.++++.|...|++.+.
T Consensus 13 ~r~~n~~~il~~l~~~---~~~sr~~la~~~~l-s~~----tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL---GPVSRIDLSRLAQL-APA----SITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHHHHSS---CSCCHHHHHHHTTC-CHH----HHHHHHHHHHHHTSEEEC
T ss_pred HHHhHHHHHHHHHHHc---CCcCHHHHHHHHCC-CHH----HHHHHHHHHHHCCcEEee
Confidence 3444455678899887 59999999999999 776 899999999999999985
No 344
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=87.39 E-value=0.2 Score=38.55 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=48.5
Q ss_pred HHHHHhhChhhHHHhcCCCCCCCHHHHHhhCC-CCCCcchhhhHHHHHHHHhcCCceeeeccC---C-CCcceecccccc
Q 036971 35 FQAVVNLDVLDIINKAGPGAELSASEIASQIP-TKNPEGAAKMLDRVLGLLVSFNILCCSFST---H-GVRLYSLAPVAK 109 (221)
Q Consensus 35 L~~av~lglfd~L~~~g~~~~~t~~eLA~~~g-~~~~~~~~~~l~rlLr~L~~~gll~~~~~~---~-~~~~y~lt~~s~ 109 (221)
|.-=+++.|+..|.+ ++.++.+||+.++ + +.. .+.+.|+.|...||++..... + ....|++++...
T Consensus 20 La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~-~~~----~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~ 90 (182)
T 4g6q_A 20 LHHPLRWRITQLLIG----RSLTTRELAELLPDV-ATT----TLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAG 90 (182)
T ss_dssp TTSHHHHHHHHHTTT----SCEEHHHHHHHCTTB-CHH----HHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTT
T ss_pred hCCHHHHHHHHHHHh----CCCCHHHHHHHhcCC-CHH----HHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccc
Confidence 333467778888876 6999999999996 7 554 799999999999999865210 0 012477776554
Q ss_pred cc
Q 036971 110 YY 111 (221)
Q Consensus 110 ~L 111 (221)
.+
T Consensus 91 ~~ 92 (182)
T 4g6q_A 91 DA 92 (182)
T ss_dssp TS
T ss_pred cC
Confidence 44
No 345
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=87.23 E-value=0.11 Score=42.79 Aligned_cols=26 Identities=15% Similarity=-0.008 Sum_probs=21.8
Q ss_pred CCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
....+|+|||||.|-++..+...+|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~ 156 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAE 156 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTT
T ss_pred CCCceeeeeccCccHHHHHHHhhCCC
Confidence 34789999999999999888777664
No 346
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=87.19 E-value=0.55 Score=32.15 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=39.4
Q ss_pred HHHHHHhhChhh-HHHhcCCCCCC-CHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 34 VFQAVVNLDVLD-IINKAGPGAEL-SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 34 aL~~av~lglfd-~L~~~g~~~~~-t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.+.-.++..|.+ .+... ..+ |..+||+.+|+ ... .+++.|+.|...|++...
T Consensus 15 ~l~~~i~~~I~~~~l~~g---~~lps~~eLa~~~~v-Sr~----tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAPG---DTLPSVADIRAQFGV-AAK----TVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHHTTTTSCCTT---SBCCCHHHHHHHSSS-CTT----HHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHHhCCCCCc---CCCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEe
Confidence 344444555555 33332 456 99999999999 887 899999999999999986
No 347
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=87.17 E-value=0.18 Score=37.21 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=38.6
Q ss_pred ChhhHHHhcC--CCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceeccccccccc
Q 036971 42 DVLDIINKAG--PGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYV 112 (221)
Q Consensus 42 glfd~L~~~g--~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~ 112 (221)
.+...|...+ .++++|..+||+.+++ ++. .+.++++.|...|++..... .+. ...+|+.++.+.
T Consensus 37 ~vL~~l~~~~~~~~~~~t~~eLa~~l~~-~~~----tvsr~v~~Le~~glVr~~~~--~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 37 STLAVISLSEGSAGIDLTMSELAARIGV-ERT----TLTRNLEVMRRDGLVRVMAG--ADARCKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHC---------CHHHHHHHHTC-CHH----HHHHHHHHHHHTTSBC-------------CCBCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHCC-Chh----hHHHHHHHHHHCCCEEeeCC--CCCCeeEEEECHHHHHHH
Confidence 3445555432 0146999999999999 887 99999999999999955311 111 355666655443
No 348
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=86.80 E-value=0.25 Score=39.34 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=40.6
Q ss_pred CHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccccc
Q 036971 57 SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYV 112 (221)
Q Consensus 57 t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~ 112 (221)
+..+||+.+++ ++. .+.++++.|...|++++. .+..+.+|+.++.+.
T Consensus 26 ~~~~La~~l~v-s~~----tvs~~l~~Le~~GlV~r~----~~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQ-SGP----TVSQTVSRMERDGLLRVA----GDRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEC----TTSCEEECHHHHHHH
T ss_pred cHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEe----CCccEEECHHHHHHH
Confidence 44999999999 777 899999999999999997 456789999887654
No 349
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=86.65 E-value=0.33 Score=46.22 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=21.3
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
...+|||||||.|.++..+++..|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~ 744 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPT 744 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCC
Confidence 367999999999999999998873
No 350
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=86.56 E-value=0.25 Score=39.22 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=43.3
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccccccccc
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYVS 113 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~~ 113 (221)
+++|..++|+.+++ .+. .+.+.++.|...|+|++.... ....+.+|+.++.+..
T Consensus 26 ~~~s~s~aA~~L~i-sq~----avSr~I~~LE~~~L~~R~~~~-R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGI-SQQ----SASRIIIDLEKNGYITRTVTK-RGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEEEEcC-CeEEEEECHHHHHHHH
Confidence 36899999999999 776 999999999999999985210 1456888888876653
No 351
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=86.40 E-value=0.38 Score=34.94 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=38.6
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCC----CCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIP----TKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g----~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.+..|...|.... +++|..+|++.++ + ++. -+.++|+-|...|++.+.
T Consensus 10 ~e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~-~~~----Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRT--EPQTVRQVHEALSARRDL-AYT----TVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCS--SCEEHHHHHHHHTTTCCC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHhccCCC-CHH----HHHHHHHHHHHCCCEEEE
Confidence 3455666777631 4899999999998 5 444 899999999999999987
No 352
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=86.24 E-value=1.2 Score=31.47 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=50.4
Q ss_pred HHHHHhhChhhHHHhcCCCCCCCHHHHHhhCC--------CCCC-cchhhhHHHHHHHHhcCCceeeeccC--C-CCcce
Q 036971 35 FQAVVNLDVLDIINKAGPGAELSASEIASQIP--------TKNP-EGAAKMLDRVLGLLVSFNILCCSFST--H-GVRLY 102 (221)
Q Consensus 35 L~~av~lglfd~L~~~g~~~~~t~~eLA~~~g--------~~~~-~~~~~~l~rlLr~L~~~gll~~~~~~--~-~~~~y 102 (221)
+.-.+++-|...|.. +|.+.-+|++.+. + ++ . .+.+.|+-|...|+++..... + ..-.|
T Consensus 10 ~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~i-s~~~----tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y 80 (118)
T 2esh_A 10 RGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGI-GHMG----NIYRVLADLEESGFLSTEWDTTVSPPRKIY 80 (118)
T ss_dssp HHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTC-CCCC----CHHHHHHHHHHTTSEEEEEECSSSSCEEEE
T ss_pred ccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCC-CCcc----hHHHHHHHHHHCCCeEEEeecCCCCCceEE
Confidence 344456667777877 5899999999883 6 66 6 899999999999999876321 0 11248
Q ss_pred eccccccccc
Q 036971 103 SLAPVAKYYV 112 (221)
Q Consensus 103 ~lt~~s~~L~ 112 (221)
++|+.++.+.
T Consensus 81 ~LT~~G~~~l 90 (118)
T 2esh_A 81 RITPQGKLYL 90 (118)
T ss_dssp EECHHHHHHH
T ss_pred EEChHHHHHH
Confidence 8888887554
No 353
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=86.19 E-value=0.42 Score=41.64 Aligned_cols=32 Identities=16% Similarity=0.039 Sum_probs=25.3
Q ss_pred HHhcCCCCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 188 VESYKGFQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 188 l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
....+ .....+|+|+|||.|..+..+++..|+
T Consensus 239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~ 270 (429)
T 1sqg_A 239 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPE 270 (429)
T ss_dssp HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTT
T ss_pred HHHcC-CCCcCeEEEECCCchHHHHHHHHHcCC
Confidence 33444 445679999999999999999998774
No 354
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=85.94 E-value=0.14 Score=40.83 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=19.5
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
...+|||||||.|.++..+++..+
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~ 79 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF 79 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE
T ss_pred CCCEEEEECCCccHHHHHHhhccc
Confidence 357999999999999888776544
No 355
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=85.90 E-value=0.67 Score=33.64 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=42.5
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceec
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSL 104 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~l 104 (221)
.+.-|++.|...+ +++.|++||.+.+.-..|..+..-+.|.|+.|+..|++.+....++..+|..
T Consensus 19 qR~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 19 PRVKILQMLDSAE-QRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFEL 83 (136)
T ss_dssp HHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEE
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 3455788887642 1389999999998210111122379999999999999998732112245764
No 356
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=85.54 E-value=0.36 Score=34.44 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=36.5
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccc
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAP 106 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~ 106 (221)
|.++.+||+.+++ ++. .+..+|+.|+..|.+.+. ..+.|-++.
T Consensus 20 p~~~~~la~~~~~-~~~----~~~~~l~~l~~~G~l~~i----~~~~~~~~~ 62 (121)
T 2pjp_A 20 PWWVRDLAKETGT-DEQ----AMRLTLRQAAQQGIITAI----VKDRYYRND 62 (121)
T ss_dssp CEEHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEEE----ETTEEEEHH
T ss_pred CCCHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEEEe----cCCceECHH
Confidence 7799999999999 887 899999999999999987 466555544
No 357
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=85.24 E-value=0.44 Score=41.00 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=19.0
Q ss_pred CCeEEEecCCccHHHHHHHhh
Q 036971 197 ITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~ 217 (221)
..+|+|||||.|.++..+++.
T Consensus 234 ~~~VLDlGcG~G~~~~~la~~ 254 (381)
T 3dmg_A 234 GRQVLDLGAGYGALTLPLARM 254 (381)
T ss_dssp TCEEEEETCTTSTTHHHHHHT
T ss_pred CCEEEEEeeeCCHHHHHHHHc
Confidence 469999999999999999875
No 358
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=85.23 E-value=0.37 Score=41.16 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 30 VLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 30 ~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.-+.+++...+..|++.|. . +++|..|||+.+|+ .+. -+.++++-|...|++.+.
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~gl-s~~----tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-K---SPVSRVELAEELGL-TKT----TVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp ----------CCCSHHHHH-H---SCBCHHHHHHHHTC-CHH----HHHHHHHHHHHHTSEEEE
T ss_pred cCchhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEee
Confidence 3456777888888999999 7 59999999999999 776 899999999999999986
No 359
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=85.22 E-value=0.31 Score=34.46 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=38.3
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+..|...|.+. +++|..|||+.++. +..-+.+-+.++|+-|...|++.+.
T Consensus 12 q~~vL~~L~~~---~~~t~~el~~~l~~-~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 12 EWDVMNIIWDK---KSVSANEIVVEIQK-YKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHS---SSEEHHHHHHHHHT-TSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHhh-cCCCChhhHHHHHHHHHHCCceEEE
Confidence 44566677776 48999999999974 3111223899999999999999987
No 360
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=84.76 E-value=0.54 Score=38.11 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=19.2
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|||+|||.|.++..+++.
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~ 104 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL 104 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHT
T ss_pred CcCeEEEeeCccCHHHHHHHHh
Confidence 3578999999999999998875
No 361
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=84.71 E-value=0.45 Score=38.49 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=49.5
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCc---ceecccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVR---LYSLAPVAKYYVS 113 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---~y~lt~~s~~L~~ 113 (221)
+..|...|...++ +++|..+||+.+++ ++. .+.++++-|...|++.+.... .+. ...+|+.++.+..
T Consensus 160 q~~vL~~L~~~~~-~~~t~~eLa~~l~i-~~~----tvt~~v~rLe~~GlV~R~~~~-~DrR~~~i~LT~~G~~~~~ 229 (250)
T 1p4x_A 160 EFTILAIITSQNK-NIVLLKDLIETIHH-KYP----QTVRALNNLKKQGYLIKERST-EDERKILIHMDDAQQDHAE 229 (250)
T ss_dssp HHHHHHHHHTTTT-CCEEHHHHHHHSSS-CHH----HHHHHHHHHHHHTSSEEEECS-SSTTCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCcCHHHHHHHHCC-Chh----hHHHHHHHHHHCCCEEeeCCC-CCCCeEEEEECHHHHHHHH
Confidence 3446777777531 25999999999999 877 999999999999999987321 122 3667777766553
No 362
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.00 E-value=0.55 Score=32.28 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=41.7
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
-+.-|+..|.++|. .++...+|..++++ +.. -+.++|+.|...+++...
T Consensus 38 ~E~lVy~~I~~aGn-~GIw~kdL~~~tnL-~~~----~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 38 QEKLVYQIIEDAGN-KGIWSRDVRYKSNL-PLT----EINKILKNLESKKLIKAV 86 (95)
T ss_dssp HHHHHHHHHHHHTT-SCEEHHHHHHHHTC-CHH----HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHhCC-CHH----HHHHHHHHHHhCCCEEEe
Confidence 34556778888653 47999999999999 887 899999999999999987
No 363
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=83.65 E-value=2 Score=26.48 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=37.8
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccc
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAP 106 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~ 106 (221)
+++|+-|+|...+. +-+ ..+..|..|.+.|-+.+. ..+|++.|
T Consensus 17 QGMTaGEVAA~f~w-~Le----~ar~aLeqLf~~G~LRKR-----sSRYrlkp 59 (68)
T 3i71_A 17 QGMTAGEVAAHFGW-PLE----KARNALEQLFSAGTLRKR-----SSRYRLKP 59 (68)
T ss_dssp TCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE-----CCEEEECC
T ss_pred ccccHHHHHHHhCC-cHH----HHHHHHHHHHhcchhhhh-----ccccccCc
Confidence 58999999999999 766 788899999999999995 88888766
No 364
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=83.45 E-value=0.73 Score=39.49 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.1
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
..++|+|||||.|..+.++++..|
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~ 211 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKP 211 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC
T ss_pred CCCEEEEEECChhHHHHHHHHCCC
Confidence 568999999999999999987654
No 365
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=83.41 E-value=0.64 Score=36.80 Aligned_cols=50 Identities=8% Similarity=0.171 Sum_probs=42.2
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccccccccc
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYVS 113 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~~ 113 (221)
..+..+||+.+++ ++. .+.++++-|...|++.+. ....+.+|+.++.+..
T Consensus 24 ~~~~~~la~~l~v-s~~----tvs~~l~~Le~~GlV~r~----~~~~v~LT~~G~~~~~ 73 (226)
T 2qq9_A 24 TPLRARIAERLEQ-SGP----TVSQTVARMERDGLVVVA----SDRSLQMTPTGRTLAT 73 (226)
T ss_dssp CCBHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEC----TTSBEEECHHHHHHHH
T ss_pred CccHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEEe----CCCCeEECHHHHHHHH
Confidence 3456999999999 777 899999999999999996 4567999999876543
No 366
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=83.25 E-value=0.47 Score=40.92 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=44.1
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLA 105 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt 105 (221)
+..|++.|.. +++++++|++++|+ +.. .+...|-.|.-.|++... .++.|+++
T Consensus 330 ~~~vl~~l~~----~~~~~D~l~~~~gl-~~~----~v~~~L~~LEl~G~v~~~----~Gg~~~~~ 382 (382)
T 3maj_A 330 RTRILALLGP----SPVGIDDLIRLSGI-SPA----VVRTILLELELAGRLERH----GGSLVSLS 382 (382)
T ss_dssp HHHHHHHCCS----SCEEHHHHHHHHCC-CHH----HHHHHHHHHHHTTCCEEC----TTSEEEC-
T ss_pred HHHHHHhhCC----CCCCHHHHHHHHCc-CHH----HHHHHHHHHHhCCcEEeC----CCceEecC
Confidence 3457888875 59999999999999 777 899999999999999997 67788764
No 367
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=83.23 E-value=0.85 Score=31.69 Aligned_cols=41 Identities=12% Similarity=0.201 Sum_probs=33.3
Q ss_pred HHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHh
Q 036971 36 QAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLV 85 (221)
Q Consensus 36 ~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~ 85 (221)
..+.++||+..|.. +..|..|||+.+|+ ... .+.|+=|.|.
T Consensus 43 ~l~~R~~l~~~L~~----ge~TQREIA~~lGi-S~s----tISRi~r~L~ 83 (101)
T 1jhg_A 43 ALGTRVRIIEELLR----GEMSQRELKNELGA-GIA----TITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHHH----CCSCHHHHHHHHCC-CHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCcCHHHHHHHHCC-Chh----hhhHHHHHHH
Confidence 35667899999998 68999999999999 665 7777766654
No 368
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=83.18 E-value=0.53 Score=41.25 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=47.6
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCC--CCcceeccccccccc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH--GVRLYSLAPVAKYYV 112 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~--~~~~y~lt~~s~~L~ 112 (221)
..|...|.+..+ +++|..+||+.+++ ++. .+.|+++-|...|++++.+... ..-...+|+.++.+.
T Consensus 407 ~~vl~~l~~~~~-~~~~~~~l~~~~~~-~~~----~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 407 IYILNHILRSES-NEISSKEIAKCSEF-KPY----YLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHTCSC-SEEEHHHHHHSSCC-CHH----HHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHhCCC-CCcCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 345667776511 37999999999999 877 9999999999999999863210 112366676666544
No 369
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=83.10 E-value=0.41 Score=40.28 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=20.6
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
...+|+|+|||+|.++..+++..|
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~ 153 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLE 153 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHH
T ss_pred CCCEEEeCCCCccHHHHHHHHHHH
Confidence 357999999999999999987654
No 370
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=82.63 E-value=1.3 Score=38.70 Aligned_cols=32 Identities=19% Similarity=0.033 Sum_probs=23.3
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 185 NKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 185 ~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
..+++... .....+|+|+|||+|.++..+.+.
T Consensus 161 ~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~ 192 (445)
T 2okc_A 161 QAMVDCIN-PQMGETVCDPACGTGGFLLTAYDY 192 (445)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHH
T ss_pred HHHHHHhC-CCCCCEEeccCCCcchHHHHHHHH
Confidence 34444444 344568999999999999888764
No 371
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=82.59 E-value=1.4 Score=31.16 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=50.0
Q ss_pred HHHHHHhhChhhHHHhcCCCCCCCHHHHHhhC------CCCCCcchhhhHHHHHHHHhcCCceeeeccC--CC--Cccee
Q 036971 34 VFQAVVNLDVLDIINKAGPGAELSASEIASQI------PTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HG--VRLYS 103 (221)
Q Consensus 34 aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~------g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~--~~~y~ 103 (221)
.++-.+++=|...|.+ +|.+--+|++.+ ++ ++. .+...|+-|...|++...... ++ .-.|+
T Consensus 7 l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i-s~g----tlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 77 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEV-VEG----TVYTILVRLEKKKLVNIEKKPSDMGPPRKFYS 77 (117)
T ss_dssp HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTC-CHH----HHHHHHHHHHHTTCEEEEEEC-----CEEEEE
T ss_pred HHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC-Ccc----HHHHHHHHHHHCCCEEEEeecCCCCCCceEEE
Confidence 3444455556667777 599999999987 67 666 899999999999999976311 01 12488
Q ss_pred ccccccccc
Q 036971 104 LAPVAKYYV 112 (221)
Q Consensus 104 lt~~s~~L~ 112 (221)
+|+.++...
T Consensus 78 LT~~G~~~l 86 (117)
T 4esf_A 78 LNEAGRQEL 86 (117)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 888887554
No 372
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=82.47 E-value=0.65 Score=41.13 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=22.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhCCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
.....+|+|+|||.|..+..+++..++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~ 125 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGG 125 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTT
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCC
Confidence 445679999999999999999988764
No 373
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=82.43 E-value=0.73 Score=37.38 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.3
Q ss_pred CCCeEEEecCCccHHH
Q 036971 196 NITRLVDVGGGLGITL 211 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~ 211 (221)
...+|||||||+|...
T Consensus 71 ~~~~vLDiGcG~G~~~ 86 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ 86 (289)
T ss_dssp CCSEEEEETCTTCCGG
T ss_pred CCCeEEEECCCcChHH
Confidence 3579999999999954
No 374
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=82.31 E-value=1.2 Score=29.27 Aligned_cols=36 Identities=8% Similarity=0.134 Sum_probs=32.1
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+.++++++|+.++. ..+ +.+..++..|.++|++++.
T Consensus 29 ~~i~l~~aa~~L~v-~~k---RRiYDI~NVLe~igli~K~ 64 (76)
T 1cf7_A 29 GVLDLKLAADTLAV-RQK---RRIYDITNVLEGIGLIEKK 64 (76)
T ss_dssp TEEEHHHHHHHTTT-CCT---HHHHHHHHHHHHHTSEEEE
T ss_pred CcCcHHHHHHHhCC-ccc---eehhhHHHHHhHhcceeec
Confidence 58999999999999 444 3899999999999999996
No 375
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=81.35 E-value=1 Score=41.00 Aligned_cols=60 Identities=10% Similarity=0.083 Sum_probs=50.0
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhc-----CCceeeeccCCCCcceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVS-----FNILCCSFSTHGVRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~-----~gll~~~~~~~~~~~y~lt~~s~~L~ 112 (221)
+.-|.+.|.+. +.+|..+||+.+++ ++. .+++.|+.|+. .|+++.. ++.|.+++......
T Consensus 432 ~~~iL~~l~~~---~~it~~~la~~l~~-s~~----~~~~~L~~L~~~~~~~~glie~~-----g~~y~L~~~~~~~~ 496 (583)
T 3lmm_A 432 IAIVLYLLFQR---PFITIDVVARGLQS-GKE----AARNALEAARQTTVAGAPLIIAH-----DGVWLLGNACREIL 496 (583)
T ss_dssp HHHHHHHHHHS---SSBCHHHHHHHHTS-CHH----HHHHHHHHHHTCEETTEESEEEE-----TTEEEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHhCc-CHH----HHHHHHHHHHhhhccccceEEEe-----CCEEEECHHHHHHh
Confidence 34577788887 58999999999999 887 89999999999 8999996 57899998655433
No 376
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=81.01 E-value=1.2 Score=38.69 Aligned_cols=52 Identities=10% Similarity=0.234 Sum_probs=45.2
Q ss_pred HHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 34 VFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 34 aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.++..-+..|++.|... +++|..|||+.+|+ .+. -+.++++-|...|++.+.
T Consensus 35 ~~r~~n~~~il~~l~~~---~~~sr~ela~~~gl-s~~----tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 35 HIKQINAGRVYKLIDQK---GPISRIDLSKESEL-APA----SITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHH---CSBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHc---CCcCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEec
Confidence 35555666789999987 59999999999999 776 899999999999999986
No 377
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=80.98 E-value=1.8 Score=31.15 Aligned_cols=35 Identities=31% Similarity=0.316 Sum_probs=31.9
Q ss_pred CCC-CHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AEL-SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..+ |..+||+.+|+ +.. .+++.|+.|...|+++..
T Consensus 26 ~~LPse~~La~~~gv-Sr~----tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 26 QRVPSTNELAAFHRI-NPA----TARNGLTLLVEAGILYKK 61 (129)
T ss_dssp SCBCCHHHHHHHTTC-CHH----HHHHHHHHHHTTTSEEEE
T ss_pred CcCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCcEEEe
Confidence 456 89999999999 877 899999999999999986
No 378
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=80.76 E-value=0.32 Score=41.18 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYV 112 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~ 112 (221)
+..|...|... +++|..+||+.+++ ++. -++|.|+.|...|+++.. .....+|+.++.+.
T Consensus 22 ~~~iL~~l~~~---~~~t~~eLa~~l~v-s~~----Tv~r~l~~Le~~Glv~~~-----~~gi~LT~~G~~~~ 81 (345)
T 2o0m_A 22 RFQILRNIYWM---QPIGRRSLSETMGI-TER----VLRTETDVLKQLNLIEPS-----KSGMTLTERGLEVY 81 (345)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEE-----ecceEEcHHHHHHH
Confidence 34567777776 58999999999999 887 999999999999999853 23355666555433
No 379
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=80.30 E-value=1.1 Score=37.73 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=19.3
Q ss_pred CCeEEEecCCccHHHHHHHhhC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+|||+|||+|.++..+++..
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~g 175 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAG 175 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTT
T ss_pred CCcEEEcccccCHHHHHHHHcC
Confidence 4699999999999999998753
No 380
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=80.27 E-value=1.1 Score=31.65 Aligned_cols=71 Identities=13% Similarity=0.251 Sum_probs=51.8
Q ss_pred HHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCC------CCCCcchhhhHHHHHHHHhcCCceeeecc-C-CC--Ccce
Q 036971 33 AVFQAVVNLDVLDIINKAGPGAELSASEIASQIP------TKNPEGAAKMLDRVLGLLVSFNILCCSFS-T-HG--VRLY 102 (221)
Q Consensus 33 ~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g------~~~~~~~~~~l~rlLr~L~~~gll~~~~~-~-~~--~~~y 102 (221)
+.++-.+++-|...|.+ +|.+.-+|++.+. + ++. .+.+.|+-|...|++..... . ++ .-.|
T Consensus 9 ~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i-~~g----tly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y 79 (117)
T 3elk_A 9 RILHGLITLYILKELVK----RPMHGYELQKSMFETTGQAL-PQG----SIYILLKTMKERGFVISESSVNEKGQQLTVY 79 (117)
T ss_dssp HHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCC-CTT----HHHHHHHHHHHHTSEEEEEEEC-CCCEEEEE
T ss_pred HHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCC-Ccc----hHHHHHHHHHHCCCEEEEeeecCCCCCceEE
Confidence 34455556666777877 5999999998886 6 666 89999999999999997532 0 01 1258
Q ss_pred eccccccccc
Q 036971 103 SLAPVAKYYV 112 (221)
Q Consensus 103 ~lt~~s~~L~ 112 (221)
++|+.++...
T Consensus 80 ~lT~~G~~~l 89 (117)
T 3elk_A 80 HITDAGKKFL 89 (117)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 8999888544
No 381
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=79.84 E-value=1.5 Score=35.50 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=18.3
Q ss_pred CeEEEecCCccHHHHHHHhh
Q 036971 198 TRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 198 ~~vvDVGGG~G~~~~~l~~~ 217 (221)
.+|+|+|||.|.++..+++.
T Consensus 90 ~~VLDl~~G~G~dal~lA~~ 109 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV 109 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH
T ss_pred CEEEEcCCcCCHHHHHHHHc
Confidence 79999999999999998865
No 382
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=79.60 E-value=0.98 Score=38.41 Aligned_cols=30 Identities=13% Similarity=-0.033 Sum_probs=22.2
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 187 IVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 187 ~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
+++..+ .. ..+|+|+|||.|.++..+++..
T Consensus 206 ~~~~~~-~~-~~~vLDl~cG~G~~~l~la~~~ 235 (369)
T 3bt7_A 206 ALDVTK-GS-KGDLLELYCGNGNFSLALARNF 235 (369)
T ss_dssp HHHHTT-TC-CSEEEEESCTTSHHHHHHGGGS
T ss_pred HHHHhh-cC-CCEEEEccCCCCHHHHHHHhcC
Confidence 344444 33 3689999999999999888754
No 383
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=79.58 E-value=1.2 Score=37.22 Aligned_cols=56 Identities=11% Similarity=0.219 Sum_probs=43.8
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAP 106 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~ 106 (221)
+..|.+.|.+. +.+|.++||+.+++ .+. .++|-|+.|...|++.+.. .+..|++.+
T Consensus 7 ~~~Il~~L~~~---~~~s~~eLa~~l~v-S~~----ti~r~l~~L~~~G~~i~~~---~g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLANG---EFHSGEQLGETLGM-SRA----AINKHIQTLRDWGVDVFTV---PGKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTTS---SCBCHHHHHHHHTS-CHH----HHHHHHHHHHHTTCCCEEE---TTTEEECSS
T ss_pred HHHHHHHHHcC---CCcCHHHHHHHHCC-CHH----HHHHHHHHHHhCCCcEEEe---cCCCcEEee
Confidence 34567788664 58999999999999 887 9999999999999986542 234677754
No 384
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=79.52 E-value=2.2 Score=29.98 Aligned_cols=71 Identities=17% Similarity=0.291 Sum_probs=50.0
Q ss_pred HHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhC--------CCCCCcchhhhHHHHHHHHhcCCceeeeccC--CC--Cc
Q 036971 33 AVFQAVVNLDVLDIINKAGPGAELSASEIASQI--------PTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HG--VR 100 (221)
Q Consensus 33 ~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~--------g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~--~~ 100 (221)
+.++-.+++=|...|.+ +|.+--+|.+.+ ++ ++. .+.+.|+-|...|+++..... ++ .-
T Consensus 7 ~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i-~~g----tly~~L~rLe~~GlI~~~~~~~~~~~~rk 77 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMEL-NEA----TLYTIFKRLEKDGIISSYWGDESQGGRRK 77 (116)
T ss_dssp HHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCC-CHH----HHHHHHHHHHHTTSEEEEEEC----CCEE
T ss_pred HHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCC-Ccc----hHHHHHHHHHHCCCEEEEeeccCCCCCce
Confidence 44445556666667777 589999999887 56 555 899999999999999975210 01 12
Q ss_pred ceeccccccccc
Q 036971 101 LYSLAPVAKYYV 112 (221)
Q Consensus 101 ~y~lt~~s~~L~ 112 (221)
.|++|+.++...
T Consensus 78 ~Y~LT~~G~~~l 89 (116)
T 3f8b_A 78 YYRLTEIGHENM 89 (116)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 488888877544
No 385
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=79.28 E-value=1.2 Score=31.19 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=31.6
Q ss_pred CCC-CHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AEL-SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..+ |..+||+.+|+ +.. .+++.|+.|...|+++..
T Consensus 31 ~~lPs~~~La~~~~v-Sr~----tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 31 EMIPSIRKISTEYQI-NPL----TVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CEECCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEe
Confidence 356 89999999999 877 899999999999999986
No 386
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=79.13 E-value=0.95 Score=35.44 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=40.5
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccc
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKY 110 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~ 110 (221)
++++..+||+.+++ .+. .++..++.|...|+++.. .+...+|+.++.
T Consensus 29 ~~V~~~~LA~~Lgv-S~~----SV~~~lkkL~e~GLV~~~-----~~Gv~LTe~G~~ 75 (200)
T 2p8t_A 29 EPLGRKQISERLEL-GEG----SVRTLLRKLSHLDIIRSK-----QRGHFLTLKGKE 75 (200)
T ss_dssp SCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEC-------CEEECHHHHH
T ss_pred CCccHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEEEe-----CCCeEECHHHHH
Confidence 48999999999999 777 999999999999999996 478889988763
No 387
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=78.98 E-value=1.1 Score=33.44 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=64.1
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccccccCCCCCCh
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYVSDQNGVSM 120 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~~~~~~~~~ 120 (221)
-.|.+.|. . |+.|..+||+++|+ .-. ..+-.|..|...|++.+... |..-.|.+ ..+
T Consensus 14 ~~ILE~Lk-~---G~~~t~~Iak~LGl-Shg----~aq~~Ly~LeREG~V~~Vk~-GK~ayw~L--------~~s----- 70 (165)
T 2vxz_A 14 RDILALLA-D---GCKTTSLIQQRLGL-SHG----RAKALIYVLEKEGRVTRVAF-GNVALVCL--------SMD----- 70 (165)
T ss_dssp HHHHHHHT-T---CCEEHHHHHHHHTC-CHH----HHHHHHHHHHHTTSCEEEEE-TTEEEEES--------CHH-----
T ss_pred HHHHHHHH-h---CCccHHHHHHHhCC-cHH----HHHHHHHHHHhcCceEEEEE-ccEEEEEe--------cHH-----
Confidence 34677888 3 69999999999999 776 89999999999999999731 01112333 111
Q ss_pred HHHHHHhcCccchhhhhhhHHHHhcCCchhHhhhCCchhhhhccCchHHHHHHHHH
Q 036971 121 RPYMNLSLDKVMMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVFNNGM 176 (221)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g~~~~~~l~~~p~~~~~F~~aM 176 (221)
.+.... ...+..+-..+++-.-.|- +-.+++.-+.++++..+.|.+..
T Consensus 71 -~y~~kV-----~dilrel~~~l~s~gvk~i--~p~~l~~li~~d~~~~~~~a~~v 118 (165)
T 2vxz_A 71 -QYRQLV-----DGMIREVERLVTTNKLKFI--SPPRLHDLIIKDPQARKFFSSII 118 (165)
T ss_dssp -HHHHHH-----HHHHHHHHHHHHHTTCSEE--CHHHHHHHHHHSHHHHHHHHTTS
T ss_pred -HHHHHH-----HHHHHHHHHHHHHcCCeee--CcHHHHHHHHhCHHHHHHHHHhc
Confidence 111111 1112333345554332211 11356777778888877777755
No 388
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=78.66 E-value=1.1 Score=39.09 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=19.9
Q ss_pred CCCeEEEecCCccHHHHHHHhhC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
...+|+|+|||.|.++..+++..
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~ 312 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRG 312 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTT
T ss_pred CCCEEEEeeccchHHHHHHHHcC
Confidence 35799999999999999998764
No 389
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=78.59 E-value=1.3 Score=35.48 Aligned_cols=52 Identities=6% Similarity=0.038 Sum_probs=42.1
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLA 105 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt 105 (221)
.-|.-.|.. ++.|.++||+.+|+ ++. -+...|.-|...|+++.. .+++....
T Consensus 168 ~~l~~~l~~----~~~t~~~la~~~~l-~~~----~V~~~l~~L~~~~~v~~~----~~~~~~~~ 219 (232)
T 2qlz_A 168 AILHYLLLN----GRATVEELSDRLNL-KER----EVREKISEMARFVPVKII----NDNTVVLD 219 (232)
T ss_dssp HHHHHHHHS----SEEEHHHHHHHHTC-CHH----HHHHHHHHHTTTSCEEEE----TTTEEEEC
T ss_pred HHHHHHHhc----CCCCHHHHHHHhCc-CHH----HHHHHHHHHHhcCCeEEe----cCCeEEec
Confidence 345556666 69999999999999 887 899999999999999876 46665543
No 390
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=78.46 E-value=2.8 Score=26.82 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=39.7
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+..|++.|..+ ||.++-.||+++|+ ... .-+.+.|-.|...|++..+
T Consensus 12 ee~I~~fL~~~---Gp~~AL~IAK~LGl-ktA---K~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDN---GPQRALVIAQALGM-RTA---KDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHTTC-CSG---GGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHc---CCchHHHHHHHhCc-chh---hhcCHHHHHHHHccCcCCC
Confidence 55688899998 59999999999999 443 1489999999999999775
No 391
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=78.34 E-value=4.3 Score=28.39 Aligned_cols=36 Identities=14% Similarity=0.018 Sum_probs=32.8
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeec
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSF 94 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~ 94 (221)
.-+|+..|++++++ +-. +.++.||.|...|++..+.
T Consensus 58 KlITpsvlseRlkI-~gS----LAR~aLreL~~kGlIk~V~ 93 (108)
T 3u5c_Z 58 RYVSVSVLVDRLKI-GGS----LARIALRHLEKEGIIKPIS 93 (108)
T ss_dssp SSBSHHHHHHTTCC-CTT----HHHHHHHHHSSSSSCEEEE
T ss_pred eEEeHHHhhhhhhh-hHH----HHHHHHHHHHHCCCEEEEe
Confidence 35999999999999 887 9999999999999999873
No 392
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=78.33 E-value=1 Score=33.29 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=41.9
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceec
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSL 104 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~l 104 (221)
.+.-|++.|...+. ++.|++||.+.+.-..|..+..-+.|.|+.|+..|++.+....++..+|..
T Consensus 18 qR~~Il~~L~~~~~-~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 18 PRLKILEVLQQPEC-QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp HHHHHHHHHTSGGG-SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEE
T ss_pred HHHHHHHHHHhCCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 34456778865410 389999999998321122123379999999999999998732112235664
No 393
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=77.88 E-value=0.93 Score=40.01 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=21.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
.....+|+|+|||.|..+..+++..+
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~ 128 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMK 128 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcC
Confidence 44567999999999999999988754
No 394
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=77.50 E-value=1.2 Score=38.79 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.1
Q ss_pred CCeEEEecCCccHHHHHHHhhC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+|+|+|||.|..+..+++..
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g 115 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKA 115 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTC
T ss_pred CCEEEEeCCCchHHHHHHHhcC
Confidence 5799999999999999887653
No 395
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=77.41 E-value=1.9 Score=36.12 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=45.1
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPV 107 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~ 107 (221)
+..|.+.|.++. +.++|.++||+.+|+ ... .+.+-++.|...|+..+.. .+..|++.+.
T Consensus 5 ~~~iL~~L~~~~-g~~~Sg~eLa~~lgv-Sr~----aV~k~i~~L~~~G~~i~~~---~~~GY~L~~~ 63 (323)
T 3rkx_A 5 SQDVLQLLYKNK-PNYISGQSIAESLNI-SRT----AVKKVIDQLKLEGCKIDSV---NHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHHT-TSCBCHHHHHHHHTS-CHH----HHHHHHHHHHHTTCEEEEE---TTTEEEEEEC
T ss_pred HHHHHHHHHhCC-CCccCHHHHHHHHCC-CHH----HHHHHHHHHHhcCCeEEEe---CCCeEEEecC
Confidence 345777885432 148999999999999 777 9999999999999966642 3557887764
No 396
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=77.33 E-value=1.4 Score=32.32 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=42.2
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceec
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSL 104 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~l 104 (221)
.+.-|++.|... ++.|+++|.+.+.-..|..+..-+.|.|+.|+..|++.+....++..+|..
T Consensus 20 qR~~Il~~l~~~---~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~ 82 (145)
T 3eyy_A 20 QRQLVLEAVDTL---EHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYHL 82 (145)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 445577788776 389999999877321222233378999999999999998732112234654
No 397
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=77.18 E-value=1.8 Score=30.61 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=50.1
Q ss_pred HHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhC------CCCCCcchhhhHHHHHHHHhcCCceeeeccCCCC----cce
Q 036971 33 AVFQAVVNLDVLDIINKAGPGAELSASEIASQI------PTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGV----RLY 102 (221)
Q Consensus 33 ~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~------g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~----~~y 102 (221)
+.++-.+++=|...|.+ +|.+--+|++.+ ++ ++. .+...|+-|...|++.......++ -.|
T Consensus 8 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i-s~g----tlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y 78 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEI-VEG----TVYTILLRLEKNQWVIAEKKPSEKGPMRKFY 78 (116)
T ss_dssp HHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSC-CHH----HHHHHHHHHHHTTSEEEEEEECC--CEEEEE
T ss_pred HHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCC-Ccc----HHHHHHHHHHHCCCEEEEeeecCCCCCceEE
Confidence 34444455556667777 699999999987 46 665 899999999999999875311011 248
Q ss_pred eccccccccc
Q 036971 103 SLAPVAKYYV 112 (221)
Q Consensus 103 ~lt~~s~~L~ 112 (221)
++|+.++...
T Consensus 79 ~lT~~G~~~l 88 (116)
T 3hhh_A 79 RLTSSGEAEL 88 (116)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 8888887544
No 398
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=77.07 E-value=0.89 Score=33.56 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=48.8
Q ss_pred HHHHHhhChhhHHHhcCCCCCCCHHHHHhhC--------CCCCCcchhhhHHHHHHHHhcCCceeeeccC--CC--Ccce
Q 036971 35 FQAVVNLDVLDIINKAGPGAELSASEIASQI--------PTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HG--VRLY 102 (221)
Q Consensus 35 L~~av~lglfd~L~~~g~~~~~t~~eLA~~~--------g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~--~~~y 102 (221)
+.--+++-|...|.+ ++++.-+|++.+ ++ ++. .|.+.|+-|...|++...... ++ .-.|
T Consensus 38 ~~g~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~i-s~g----tLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y 108 (145)
T 1xma_A 38 IRGYVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVI-KET----TLYSAFARLEKNGYIKSYYGEETQGKRRTYY 108 (145)
T ss_dssp GGGTHHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCC-CHH----HHHHHHHHHHHTTSEEEEEEEEC--CEEEEE
T ss_pred hcCcHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCc-Chh----HHHHHHHHHHHCCCEEEEEeccCCCCCeEEE
Confidence 334455666677776 589999988887 46 665 899999999999999875311 01 1248
Q ss_pred eccccccccc
Q 036971 103 SLAPVAKYYV 112 (221)
Q Consensus 103 ~lt~~s~~L~ 112 (221)
++|+.++.+.
T Consensus 109 ~LT~~G~~~l 118 (145)
T 1xma_A 109 RITPEGIKYY 118 (145)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 8888777554
No 399
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=76.80 E-value=1.3 Score=30.64 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=31.7
Q ss_pred CCC-CHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AEL-SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+.+ +..+||+.+|+ ... .+++-|+.|...|++...
T Consensus 41 ~~lps~~eLa~~lgV-Sr~----tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 41 EGLLVASKIADRVGI-TRS----VIVNALRKLESAGVIESR 76 (102)
T ss_dssp EEEECHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CcCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEE
Confidence 356 99999999999 776 899999999999999986
No 400
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=76.63 E-value=2.4 Score=39.37 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 183 VINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 183 ~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.+..++.... |.....|+|.+||+|.++++.+..
T Consensus 178 LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~ 211 (703)
T 3v97_A 178 LAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAML 211 (703)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHH
T ss_pred HHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHH
Confidence 4455666677 877789999999999999887754
No 401
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=76.39 E-value=1.6 Score=31.25 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=32.0
Q ss_pred CCC-CHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AEL-SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..+ +..+||+.+|+ +.. .+++.|+.|...|++...
T Consensus 33 ~~lPse~~La~~~~v-Sr~----tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 33 DQLPSVRETALQEKI-NPN----TVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp CEECCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEe
Confidence 466 99999999999 877 899999999999999986
No 402
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=76.30 E-value=2.3 Score=37.64 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.2
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
...+|+|+|||.|..+..+++..+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~ 140 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMN 140 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC
Confidence 457999999999999999998764
No 403
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=76.23 E-value=2.2 Score=26.03 Aligned_cols=37 Identities=11% Similarity=0.229 Sum_probs=27.3
Q ss_pred hHHHhcCCCCCCCHHHHHhhC-----CCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 45 DIINKAGPGAELSASEIASQI-----PTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 45 d~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..+... ++.|++||++.+ ++ +.. -+.|-|. .+|++ +.
T Consensus 12 ~ll~~~---~~~t~~el~~~l~~~~~~v-s~~----Tv~R~L~---~lg~v-~~ 53 (64)
T 2p5k_A 12 EIITSN---EIETQDELVDMLKQDGYKV-TQA----TVSRDIK---ELHLV-KV 53 (64)
T ss_dssp HHHHHS---CCCSHHHHHHHHHHTTCCC-CHH----HHHHHHH---HHTCE-EE
T ss_pred HHHHcC---CCCCHHHHHHHHHHhCCCc-CHH----HHHHHHH---HcCCE-EE
Confidence 445554 589999999999 88 665 6777777 56777 44
No 404
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=76.23 E-value=3.1 Score=33.66 Aligned_cols=34 Identities=21% Similarity=0.054 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 183 VINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 183 ~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
-...+.+.|. +....+|||+||++|.++.-.+..
T Consensus 66 KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~ 99 (267)
T 3p8z_A 66 KLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGL 99 (267)
T ss_dssp HHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTS
T ss_pred HHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHh
Confidence 3445667775 776779999999999999855543
No 405
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=76.22 E-value=2.8 Score=35.97 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.5
Q ss_pred CCeEEEecCCccHHHHHH
Q 036971 197 ITRLVDVGGGLGITLSDH 214 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l 214 (221)
.-+|+|+|||+|..+..+
T Consensus 53 ~~~IaDlGCssG~Nt~~~ 70 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHI 70 (374)
T ss_dssp CEEEEEETCCSSHHHHHH
T ss_pred ceEEEecCCCCChhHHHH
Confidence 468999999999988766
No 406
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=76.20 E-value=2.1 Score=30.43 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=31.6
Q ss_pred CCC-CHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AEL-SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..+ |..+||+.+|+ +.. -+++.+..|...|+++..
T Consensus 35 ~~Lps~~~La~~~~v-Sr~----tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 35 DKLPSVREMGVKLAV-NPN----TVSRAYQELERAGYIYAK 70 (125)
T ss_dssp CBCCCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCeEEEe
Confidence 356 69999999999 877 899999999999999986
No 407
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=75.93 E-value=1.4 Score=38.38 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=18.5
Q ss_pred CCCeEEEecCC------ccHHHHHHHhh-CCC
Q 036971 196 NITRLVDVGGG------LGITLSDHNFQ-IPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG------~G~~~~~l~~~-~P~ 220 (221)
...+||||||| .|..+..++++ +|+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~ 247 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPR 247 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTT
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCC
Confidence 35799999999 66666677665 465
No 408
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=75.92 E-value=1.6 Score=37.32 Aligned_cols=22 Identities=18% Similarity=-0.052 Sum_probs=19.7
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|+|+|||.|.++..+++.
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~ 238 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA 238 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT
T ss_pred CCCeEEEecCCCCHHHHHHHHC
Confidence 4579999999999999999875
No 409
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=75.71 E-value=3.3 Score=34.36 Aligned_cols=31 Identities=23% Similarity=0.104 Sum_probs=24.0
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 186 KIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 186 ~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.+.+. .-+....++||+||+.|.++.-+++.
T Consensus 72 ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~ 102 (300)
T 3eld_A 72 WLHER-GYLRITGRVLDLGCGRGGWSYYAAAQ 102 (300)
T ss_dssp HHHHH-TSCCCCEEEEEETCTTCHHHHHHHTS
T ss_pred HHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHh
Confidence 34444 32567789999999999999988875
No 410
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=75.63 E-value=2 Score=32.55 Aligned_cols=62 Identities=11% Similarity=0.313 Sum_probs=46.2
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhC--------CCCCCcchhhhHHHHHHHHhcCCceeeeccC--C--CCcceeccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQI--------PTKNPEGAAKMLDRVLGLLVSFNILCCSFST--H--GVRLYSLAP 106 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~--------g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~--~~~~y~lt~ 106 (221)
+++-|...|.. +|++.-+|++.+ ++ ++. .+.+.|+-|...|++...... + ..-.|++|+
T Consensus 3 l~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~-s~~----~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~ 73 (179)
T 1yg2_A 3 LPHVILTVLST----RDATGYDITKEFSASIGYFWKA-SHQ----QVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQ 73 (179)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCC-CHH----HHHHHHHHHHHTTSEEECCC---------CEEECH
T ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCC-CcC----cHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeCh
Confidence 34556677877 599999999988 46 555 899999999999999975221 0 123599999
Q ss_pred ccc
Q 036971 107 VAK 109 (221)
Q Consensus 107 ~s~ 109 (221)
.++
T Consensus 74 ~G~ 76 (179)
T 1yg2_A 74 AGR 76 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 411
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=75.44 E-value=1.4 Score=33.10 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=42.6
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCC--CCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTK--NPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLA 105 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~--~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt 105 (221)
-+.-|++.|.+.+ ++.|++||-+.+.-. .|..+..-+.|.|+.|+..|++.+....++..+|...
T Consensus 34 qR~~IL~~L~~~~--~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~~~ 100 (162)
T 4ets_A 34 QREVLLKTLYHSD--THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELA 100 (162)
T ss_dssp HHHHHHHHHHSCC--SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEEEC
T ss_pred HHHHHHHHHHhCC--CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEEeC
Confidence 4556788888865 699999998876320 0111233789999999999999986321112356654
No 412
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=75.28 E-value=1.6 Score=37.35 Aligned_cols=22 Identities=0% Similarity=-0.206 Sum_probs=19.4
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|+|+|||+|.++..+++.
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ 233 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMG 233 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT
T ss_pred CCCeEEEEeeccCHHHHHHHHC
Confidence 4579999999999999998874
No 413
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=74.89 E-value=1.7 Score=30.12 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=45.9
Q ss_pred HHhhChhhHHHhcCCCCCCCHHHHHhh----CCCCCCcchhhhHHHHHHHHhcCCceeeeccC-CC--Ccceeccccccc
Q 036971 38 VVNLDVLDIINKAGPGAELSASEIASQ----IPTKNPEGAAKMLDRVLGLLVSFNILCCSFST-HG--VRLYSLAPVAKY 110 (221)
Q Consensus 38 av~lglfd~L~~~g~~~~~t~~eLA~~----~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~-~~--~~~y~lt~~s~~ 110 (221)
.+++-|...|.+ +|.+--+|++. +++ ++. .+.++|+-|...|++...... ++ .-.|++|+.++.
T Consensus 9 ~l~~~IL~~L~~----~~~~gyel~~~l~~~~~i-~~~----tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~ 79 (108)
T 3l7w_A 9 LIEYLILAIVSK----HDSYGYDISQTIKLIASI-KES----TLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEK 79 (108)
T ss_dssp HHHHHHHHHHHH----SCEEHHHHHHHHTTTCCC-CHH----HHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHc----CCCcHHHHHHHHHHHhCC-CcC----hHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHH
Confidence 345556667777 58887777776 477 666 899999999999999976311 01 113788887775
Q ss_pred cc
Q 036971 111 YV 112 (221)
Q Consensus 111 L~ 112 (221)
..
T Consensus 80 ~l 81 (108)
T 3l7w_A 80 HL 81 (108)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 414
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=74.88 E-value=1.4 Score=36.15 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=19.7
Q ss_pred CCCCeEEEecCCccHHHHHHHhh
Q 036971 195 QNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
....+|+|+|||.|.++..+++.
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~ 146 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY 146 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH
T ss_pred CCCCEEEEecCcCcHHHHHHHHh
Confidence 35689999999999999888765
No 415
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=74.88 E-value=1.7 Score=37.19 Aligned_cols=22 Identities=9% Similarity=-0.094 Sum_probs=19.6
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|+|+|||.|.++..+++.
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~ 241 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMG 241 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHT
T ss_pred CCCeEEEeeccCCHHHHHHHHC
Confidence 3579999999999999999876
No 416
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=74.85 E-value=2.4 Score=31.65 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=17.2
Q ss_pred CCCeEEEecCCccH-HHHHHHh
Q 036971 196 NITRLVDVGGGLGI-TLSDHNF 216 (221)
Q Consensus 196 ~~~~vvDVGGG~G~-~~~~l~~ 216 (221)
...++||||||.|. .+..|++
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~ 56 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRK 56 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHH
T ss_pred CCCcEEEEccCCChHHHHHHHH
Confidence 35699999999994 7777765
No 417
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=74.56 E-value=2.5 Score=37.98 Aligned_cols=30 Identities=20% Similarity=0.078 Sum_probs=21.9
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 187 IVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 187 ~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+++... .....+|+|.+||+|.++..+.+.
T Consensus 161 mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~ 190 (541)
T 2ar0_A 161 IIHLLK-PQPREVVQDPAAGTAGFLIEADRY 190 (541)
T ss_dssp HHHHHC-CCTTCCEEETTCTTTHHHHHHHHH
T ss_pred HHHHhc-cCCCCeEecCCcccchHHHHHHHH
Confidence 344444 334568999999999999887754
No 418
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=73.60 E-value=2.1 Score=36.90 Aligned_cols=22 Identities=18% Similarity=-0.073 Sum_probs=19.5
Q ss_pred CCeEEEecCCccHHHHHHHhhC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..+|+|+|||+|.++..+++.-
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~g 236 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKG 236 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTT
T ss_pred CCeEEEcccchhHHHHHHHHcC
Confidence 5799999999999999988753
No 419
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=73.47 E-value=3.1 Score=34.66 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHh
Q 036971 184 INKIVESYKGFQNITRLVDVGGGLGITLSDHNF 216 (221)
Q Consensus 184 ~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~ 216 (221)
...+.+.+. +....+||||||++|.++.-.+.
T Consensus 83 L~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~ 114 (321)
T 3lkz_A 83 LRWLVERRF-LEPVGKVIDLGCGRGGWCYYMAT 114 (321)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHh
Confidence 445666666 66667999999999999985543
No 420
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=73.36 E-value=3.5 Score=33.27 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=44.1
Q ss_pred HHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccc
Q 036971 38 VVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAP 106 (221)
Q Consensus 38 av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~ 106 (221)
.+...|...+...|- .|-.+.+|++.+++ ++. .++.+|+.|+..|.+.+. .++.|-++.
T Consensus 141 ~~~~~i~~~~~~~g~-~pp~~~dl~~~l~~-~~~----~~~~~l~~l~~~g~lv~l----~~~~~~~~~ 199 (258)
T 1lva_A 141 KLLKDLEDKYRVSRW-QPPSFKEVAGSFNL-DPS----ELEELLHYLVREGVLVKI----NDEFYWHRQ 199 (258)
T ss_dssp HHHHHHHHHHHHHTT-SCCBHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEES----SSSBEEEHH
T ss_pred HHHHHHHHHHHHCCC-CCCCHHHHHhHhCC-CHH----HHHHHHHHHHHCCCEEEe----cCCeEEcHH
Confidence 344456667766432 25689999999999 887 899999999999999987 566555443
No 421
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=73.24 E-value=3.1 Score=33.90 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=25.3
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 184 INKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 184 ~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+-+.+- +....+|||+||+.|.++.-.++.
T Consensus 62 L~EIdeK~l-ikpg~~VVDLGaAPGGWSQvAa~~ 94 (269)
T 2px2_A 62 LRWLVERRF-VQPIGKVVDLGCGRGGWSYYAATM 94 (269)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTSHHHHHHTTS
T ss_pred HHHHHHcCC-CCCCCEEEEcCCCCCHHHHHHhhh
Confidence 345555653 777889999999999999876654
No 422
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=72.84 E-value=2 Score=36.64 Aligned_cols=22 Identities=18% Similarity=-0.074 Sum_probs=19.2
Q ss_pred CCCeEEEecCCccHHHHHHHhh
Q 036971 196 NITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...+|+|+|||+|.++..+++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~ 230 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG 230 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH
T ss_pred CCCeEEEeeeccCHHHHHHHHh
Confidence 4579999999999999998865
No 423
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=72.83 E-value=2.2 Score=30.71 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=35.0
Q ss_pred CCC-CHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCccee
Q 036971 54 AEL-SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYS 103 (221)
Q Consensus 54 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~ 103 (221)
..+ |..+||+.+|+ +.. -+++-++.|...|+++... ..|.|-
T Consensus 36 ~~LPser~La~~~gV-Sr~----tVReAl~~L~~eGlv~~~~---g~G~~V 78 (134)
T 4ham_A 36 EKILSIREFASRIGV-NPN----TVSKAYQELERQEVIITVK---GKGTFI 78 (134)
T ss_dssp CEECCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEET---TTEEEE
T ss_pred CCCccHHHHHHHHCC-CHH----HHHHHHHHHHHCCcEEEEc---CcEEEE
Confidence 356 78899999999 887 8999999999999999863 355554
No 424
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=72.52 E-value=1.5 Score=31.39 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=30.9
Q ss_pred CCC-CHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AEL-SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..+ +..+||+.+|+ +.. -+++.++.|...|+++..
T Consensus 33 ~~lPs~~~La~~~~v-Sr~----tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 33 GRIPSVREYASIVEV-NAN----TVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp SEECCTTTTTTCC-C-CSG----GGHHHHHHHHTTTSEEEE
T ss_pred CcCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCcEEEE
Confidence 356 88999999999 888 899999999999999987
No 425
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=71.85 E-value=3 Score=33.11 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=32.8
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..++..+||+.+|+ ... .+++-|+.|...|+++..
T Consensus 48 ~~L~e~~La~~lgV-Sr~----~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 48 TALRQQELATLFGV-SRM----PVREALRQLEAQSLLRVE 82 (237)
T ss_dssp CBCCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CeeCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEEe
Confidence 58999999999999 777 899999999999999987
No 426
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=71.64 E-value=0.82 Score=34.12 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=37.8
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceee
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCC 92 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~ 92 (221)
++..|.+.|... +.++..+||+.+|+ +.. .+++-++.|...|+++.
T Consensus 14 l~~~Il~~l~~~---~~ls~~eLa~~lgv-Sr~----~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 14 IDRNILNELQKD---GRISNVELSKRVGL-SPT----PCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHHHHC---SSCCTTGGGTSSSC-CTT----TSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCcEEE
Confidence 344566667765 58999999999999 777 88999999999999984
No 427
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=71.44 E-value=3.4 Score=34.22 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=32.4
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCcee-ee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILC-CS 93 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~-~~ 93 (221)
+++|.+|||+.+|+ .+. -++|.|..|...|+++ +.
T Consensus 20 ~~~~~~ela~~l~v-S~~----tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 20 QDMTQAQIARELGI-YRT----TISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp SCCCHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCcEEEEe
Confidence 48999999999999 777 8999999999999998 65
No 428
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=71.25 E-value=4.2 Score=33.39 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=17.0
Q ss_pred CCCeEEEecCCc--cHHHHHHHh-hCCC
Q 036971 196 NITRLVDVGGGL--GITLSDHNF-QIPS 220 (221)
Q Consensus 196 ~~~~vvDVGGG~--G~~~~~l~~-~~P~ 220 (221)
+..+|||||||. +....++++ ..|+
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~ 105 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPE 105 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTT
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCC
Confidence 468999999997 334555544 4564
No 429
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=70.91 E-value=2 Score=35.99 Aligned_cols=20 Identities=20% Similarity=0.001 Sum_probs=17.4
Q ss_pred CCCeEEEecCCccHHHHHHHh
Q 036971 196 NITRLVDVGGGLGITLSDHNF 216 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~ 216 (221)
...+|+|+|||+|.++.. ++
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~ 214 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK 214 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT
T ss_pred CCCEEEEccCccCHHHHh-cc
Confidence 457999999999999988 65
No 430
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=70.87 E-value=3.6 Score=35.22 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.2
Q ss_pred CCeEEEecCCccHHHHHHHhhCCC
Q 036971 197 ITRLVDVGGGLGITLSDHNFQIPS 220 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~~P~ 220 (221)
..+|+|+|||+|..+..+++..|.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~ 71 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPA 71 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSC
T ss_pred CCEEEECCCchhHHHHHHHHhCCC
Confidence 578999999999999999988653
No 431
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=70.67 E-value=0.87 Score=37.23 Aligned_cols=60 Identities=10% Similarity=0.172 Sum_probs=0.0
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhC-CCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQI-PTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAP 106 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~ 106 (221)
++..|++.|.....+.++++++|++++ ++ ++. -++..|+.|+..|.+-... ++++|+.|.
T Consensus 208 ~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~-~~~----~v~~al~~L~~eG~IYsTi---Dd~h~k~t~ 268 (270)
T 2pi2_A 208 AQNQVLNLIKACPRPEGLNFQDLKNQLKHM-SVS----SIKQAVDFLSNEGHIYSTV---DDDHFKSTD 268 (270)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHhcCC-CHH----HHHHHHHHHHhCCEEeccc---cccceeecc
Confidence 445688888875322479999999999 68 777 8999999999999996652 577888764
No 432
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=69.95 E-value=2.6 Score=33.91 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=48.1
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCC--cceeccccccccc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGV--RLYSLAPVAKYYV 112 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~--~~y~lt~~s~~L~ 112 (221)
..+...|.+.+. +++|..+||+.+++ ++. .+.++++-|...|++.+.....+. -...+|+.++.+.
T Consensus 37 ~~vL~~L~~~~~-~~~~~~el~~~l~~-~~~----t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 37 FILLTYLFHQQE-NTLPFKKIVSDLCY-KQS----DLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHSCSC-SEEEHHHHHHHSSS-CGG----GTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHhcCC-CCcCHHHHHHHHCC-CHh----hHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 345566665421 37999999999999 887 999999999999999986422111 2467888776544
No 433
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=69.72 E-value=5.8 Score=31.28 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=32.8
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
+.+|+.+||+.+|+ +.. .....|+.+...|++..+
T Consensus 167 g~vt~~~la~~l~w-s~~----~a~e~L~~~e~~G~l~~D 201 (218)
T 3cuq_B 167 GSLTSEEFAKLVGM-SVL----LAKERLLLAEKMGHLCRD 201 (218)
T ss_dssp SCBCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHhCC-CHH----HHHHHHHHHHHcCCEEEE
Confidence 58999999999999 777 889999999999999998
No 434
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=68.89 E-value=0.5 Score=40.07 Aligned_cols=58 Identities=9% Similarity=-0.052 Sum_probs=44.0
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccc
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAP 106 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~ 106 (221)
.+..++-.|-.. ++.|+.|||+.+|+ +.. .+.+.|+.|...|++.... +.+..|+..+
T Consensus 19 ~ea~vY~~Ll~~---g~~t~~eia~~~gv-~~~----~Vy~~L~~L~~~GlV~~~~--g~p~~y~av~ 76 (342)
T 3qph_A 19 YEILTYWTLLVY---GPSTAKEISTKSGI-PYN----RVYDTISSLKLRGFVTEIE--GTPKVYAAYS 76 (342)
T ss_dssp HTTSCSHHHHHH---HHHHHSCCSSSTTS-SSC----SCCHHHHHHHHHTSEEEEC--CTTCEEEECC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEEc--CceeEEEEcC
Confidence 344555566555 58999999999999 877 8999999999999999862 1344555443
No 435
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=68.78 E-value=4.1 Score=34.60 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=19.1
Q ss_pred CCeEEEecCCccHHHHHHHhh
Q 036971 197 ITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~ 217 (221)
...||+||.|.|.+...|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~ 79 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNK 79 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHhh
Confidence 478999999999999999975
No 436
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=67.37 E-value=2.9 Score=23.49 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=21.8
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhc
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVS 86 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~ 86 (221)
..|..+||+.+|+ +.. -+.++++....
T Consensus 21 g~s~~~IA~~lgi-s~~----Tv~~~~~~~~~ 47 (51)
T 1tc3_C 21 NVSLHEMSRKISR-SRH----CIRVYLKDPVS 47 (51)
T ss_dssp TCCHHHHHHHHTC-CHH----HHHHHHHCSTT
T ss_pred CCCHHHHHHHHCc-CHH----HHHHHHhhHHh
Confidence 5899999999999 776 78888765433
No 437
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=67.23 E-value=8.3 Score=27.43 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=31.8
Q ss_pred HHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHh
Q 036971 36 QAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLV 85 (221)
Q Consensus 36 ~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~ 85 (221)
..+-++.|+..|.+ +.|..|||+.+|+ ... -+.|+-+.|-
T Consensus 61 aLs~R~eV~klL~~-----G~syreIA~~~g~-S~a----TIsRv~r~L~ 100 (119)
T 3kor_A 61 SLSQRLQVAKMIKQ-----GYTYATIEQESGA-STA----TISRVKRSLQ 100 (119)
T ss_dssp HHHHHHHHHHHHHH-----TCCHHHHHHHHCC-CHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----CCCHHHHHHHHCC-CHH----HHHHHHHHHh
Confidence 45556889999998 4999999999999 765 6677666653
No 438
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=67.07 E-value=7.4 Score=33.50 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=32.2
Q ss_pred cCchHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 164 TDSRFNEVFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 164 ~~p~~~~~F~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
..|+....|-..++.+... .| +... .+..-.||++|+|+|.++..+++.
T Consensus 53 Tapeis~~FGe~la~~~~~---~w-~~~g-~p~~~~ivElGaG~GtLa~diL~~ 101 (387)
T 1zkd_A 53 TSPEISQMFGELLGLWSAS---VW-KAAD-EPQTLRLIEIGPGRGTMMADALRA 101 (387)
T ss_dssp SHHHHCHHHHHHHHHHHHH---HH-HHTT-CCSSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHH---HH-HHcC-CCCCcEEEEECCCcchHHHHHHHH
Confidence 3477777787776654322 22 2222 333457999999999999988765
No 439
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=67.07 E-value=5 Score=30.80 Aligned_cols=34 Identities=26% Similarity=0.178 Sum_probs=32.0
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-++||..+|+ .+. .+.|+|..|...|+++..
T Consensus 180 ~~t~~~lA~~lg~-sr~----tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 180 YLSREELATLSNM-TVS----NAIRTLSTFVSERMLALD 213 (232)
T ss_dssp CCCHHHHHHHTTS-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEeeC
Confidence 6899999999999 887 999999999999999985
No 440
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=66.86 E-value=3.1 Score=28.94 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=29.6
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcch----hhhHHHHHHHHhcCC
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGA----AKMLDRVLGLLVSFN 88 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~----~~~l~rlLr~L~~~g 88 (221)
++-.|.+.|.+ .|+|+.|||+.+|+ ++... -+.|..+-+.+-..|
T Consensus 12 ~Re~Ii~lL~~----~plta~ei~~~l~i-~~~~~ke~Vy~hLeHIaksl~r~g 60 (105)
T 2gmg_A 12 RREKIIELLLE----GDYSPSELARILDM-RGKGSKKVILEDLKVISKIAKREG 60 (105)
T ss_dssp HHHHHHHHTTT----SCBCTTHHHHSSCC-CSSCCHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHhCC-CCCChHHHHHHHHHHHHHHHhcCC
Confidence 45678888886 69999999999999 63200 112444555555544
No 441
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=66.79 E-value=3.4 Score=31.04 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-++||..+|+ .+. .+.|+|..|...|+++..
T Consensus 164 ~~t~~~lA~~lg~-sr~----tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 164 KITRQEIGRIVGC-SRE----MVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp ECCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEEec
Confidence 5899999999999 887 999999999999999985
No 442
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=66.74 E-value=2.5 Score=35.15 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=21.0
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
.....+|+|+|+|.|..+..+++..
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~ 124 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALL 124 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHh
Confidence 4446799999999999999998764
No 443
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=66.09 E-value=4.2 Score=30.85 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=32.0
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-++||..+|+ .+. .+.|+|..|...|+++..
T Consensus 169 ~~t~~~lA~~lg~-sr~----tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 169 KITHETIANHLGS-HRE----VITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp CCCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEEeC
Confidence 7899999999999 887 999999999999999885
No 444
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=65.79 E-value=4.2 Score=33.66 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.5
Q ss_pred CCCeEEEecCCccHHHHHHHhhCC
Q 036971 196 NITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 196 ~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
+.++|+=||||.|..++++++..|
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~ 106 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKN 106 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTT
T ss_pred CCCeEEEECCCchHHHHHHHHcCC
Confidence 578999999999999999998655
No 445
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=65.36 E-value=6.8 Score=26.28 Aligned_cols=34 Identities=6% Similarity=0.080 Sum_probs=28.5
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCC 92 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~ 92 (221)
++.++++||+.+|+ +++ .|.|+++......+-+.
T Consensus 18 ~~~~~~~lA~~~~~-S~~----~l~r~fk~~~g~s~~~~ 51 (103)
T 3lsg_A 18 SQFTLSVLSEKLDL-SSG----YLSIMFKKNFGIPFQDY 51 (103)
T ss_dssp TTCCHHHHHHHTTC-CHH----HHHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCc-CHH----HHHHHHHHHHCcCHHHH
Confidence 48999999999999 888 99999988776655554
No 446
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=65.29 E-value=7.6 Score=30.04 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCCHHHHHhhCCCCCC-cchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNP-EGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~-~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-.+||..+|+ .+ . .+.|+|..|...|+++..
T Consensus 169 ~~t~~~lA~~lG~-sr~e----tvsR~l~~l~~~glI~~~ 203 (238)
T 2bgc_A 169 NLTMQELGYSSGI-AHSS----AVSRIISKLKQEKVIVYK 203 (238)
T ss_dssp CCCHHHHHHHTTC-CCHH----HHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhCC-ChHH----HHHHHHHHHHHCCCEEec
Confidence 6899999999999 88 7 899999999999999985
No 447
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=65.23 E-value=5.8 Score=33.43 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=35.8
Q ss_pred HHHhcCCCCCCCHHHHHhhC--CCCCCcchhhhHHHHHHHHhcCCceeeec
Q 036971 46 IINKAGPGAELSASEIASQI--PTKNPEGAAKMLDRVLGLLVSFNILCCSF 94 (221)
Q Consensus 46 ~L~~~g~~~~~t~~eLA~~~--g~~~~~~~~~~l~rlLr~L~~~gll~~~~ 94 (221)
+|.+. +|+++.+||+.. ++ .+. -+++-|..|...|++.+..
T Consensus 30 yl~~~---~pV~s~~La~~~~l~V-S~a----TIRrDL~~LE~~GlL~r~H 72 (338)
T 1stz_A 30 YIENK---KPVSSQRVLEVSNIEF-SSA----TIRNDMKKLEYLGYIYQPH 72 (338)
T ss_dssp HHHHC---SCBCHHHHHHHSCCCS-CHH----HHHHHHHHHHHTTSEECCS
T ss_pred HHHcC---CCccHHHHHHHhCCCC-CHH----HHHHHHHHHHHCCCEEEcc
Confidence 67776 599999999999 67 665 7999999999999999973
No 448
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=65.12 E-value=3.2 Score=30.44 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=31.6
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
-+|+..|++++++ +-. +-+++||.|...|++..+
T Consensus 63 lITpsvlseRlkI-~gS----LARkaLreL~~kGlIk~V 96 (143)
T 2xzm_8 63 VLTVSTVVEKLKV-NGS----LARQLMRTMADRKLVEKV 96 (143)
T ss_dssp EECHHHHHHHHCB-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred eecHHHHHHHhcc-hHH----HHHHHHHHHHHCCCEEEE
Confidence 5899999999999 776 899999999999999987
No 449
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=65.08 E-value=4.7 Score=38.31 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=22.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHhhCC
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQIP 219 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~~P 219 (221)
+....+|+|.|||+|.++.++++..+
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ 344 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFN 344 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTST
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhc
Confidence 44567999999999999999998775
No 450
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=64.97 E-value=4 Score=30.73 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-++||..+|+ .+. .+.|+|..|...|+++..
T Consensus 146 ~~t~~~lA~~lg~-sr~----tvsR~l~~L~~~g~I~~~ 179 (202)
T 2zcw_A 146 KATHDELAAAVGS-VRE----TVTKVIGELAREGYIRSG 179 (202)
T ss_dssp ECCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEEeC
Confidence 5899999999999 887 999999999999999985
No 451
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=64.91 E-value=3 Score=29.27 Aligned_cols=64 Identities=11% Similarity=0.164 Sum_probs=45.3
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhCC------CCCCcchhhhHHHHHHHHhcCCceeeeccCCCC----cceecccccc
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQIP------TKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGV----RLYSLAPVAK 109 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~g------~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~----~~y~lt~~s~ 109 (221)
++=|...|.. +|.+--+|++.+. + ++. .|...|+-|...|++.......++ -.|++|+.++
T Consensus 11 ~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~i-s~g----tlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~ 81 (115)
T 4esb_A 11 EGCILYIISQ----EEVYGYELSTKLNKHGFTFV-SEG----SIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGL 81 (115)
T ss_dssp HHHHHHHHHH----SCEEHHHHHHHHHHTTCTTC-CHH----HHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC-CcC----hHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHH
Confidence 3345556766 5899999998874 6 555 899999999999999875211011 1388888877
Q ss_pred ccc
Q 036971 110 YYV 112 (221)
Q Consensus 110 ~L~ 112 (221)
...
T Consensus 82 ~~l 84 (115)
T 4esb_A 82 EQL 84 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 452
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=64.79 E-value=1.4 Score=40.21 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=0.0
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
--|.++|.+. +.+|..||++.+++ ++. .++++|+-|+..|+++..
T Consensus 519 ~~I~~~l~~~---g~it~~di~~l~~l-s~~----qa~~~L~~Lv~~G~l~~~ 563 (583)
T 3lmm_A 519 NAAMLWLSEV---GDLATSDLMAMCGV-SRG----TAKACVDGLVDEERVVAV 563 (583)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCC-CHH----HHHHHHHHHHHCCcEEEe
Confidence 3477888887 58999999999999 887 789999999999999886
No 453
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=64.56 E-value=4.7 Score=30.96 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=31.9
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-.+||..+|+ .+. .+.|+|..|...|+++..
T Consensus 175 ~~t~~~iA~~lg~-sr~----tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 175 PLGTQDIMARTSS-SRE----TVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp CCCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHhCC-cHH----HHHHHHHHHHHCCcEEec
Confidence 6899999999999 887 999999999999999985
No 454
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=64.36 E-value=4.1 Score=30.64 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=31.8
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-++||..+|+ .+. .+.|+|..|...|+++..
T Consensus 167 ~~t~~~iA~~lg~-sr~----tvsR~l~~L~~~g~I~~~ 200 (210)
T 3ryp_A 167 KITRQEIGQIVGC-SRE----TVGRILKMLEDQNLISAH 200 (210)
T ss_dssp ECCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCC-cHH----HHHHHHHHHHHCCcEEeC
Confidence 6899999999999 887 999999999999999985
No 455
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=64.16 E-value=4.3 Score=30.39 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=31.8
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-++||..+|+ .+. .+.|+|..|...|+++..
T Consensus 139 ~~t~~~lA~~lg~-sr~----tvsR~l~~L~~~g~I~~~ 172 (195)
T 3b02_A 139 TVSHEEIADATAS-IRE----SVSKVLADLRREGLIATA 172 (195)
T ss_dssp ECCHHHHHHTTTS-CHH----HHHHHHHHHHHHTSEEEE
T ss_pred cCCHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEEec
Confidence 5899999999999 887 999999999999999985
No 456
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=63.55 E-value=4.3 Score=31.03 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-++||..+|+ .+. .+.|+|..|...|+++..
T Consensus 187 ~lt~~~lA~~lg~-sr~----tvsR~l~~L~~~g~I~~~ 220 (230)
T 3iwz_A 187 RVSRQELARLVGC-SRE----MAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp ECCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC-cHH----HHHHHHHHHHHCCCEEEC
Confidence 4799999999999 887 999999999999999986
No 457
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=63.10 E-value=4.4 Score=30.64 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.9
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-++||..+|+ .+. .+.|+|..|...|+++..
T Consensus 163 ~~t~~~lA~~lg~-sr~----tvsR~l~~l~~~g~I~~~ 196 (216)
T 4ev0_A 163 QIRHHELAALAGT-SRE----TVSRVLHALAEEGVVRLG 196 (216)
T ss_dssp ECCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEEec
Confidence 5899999999999 887 999999999999999985
No 458
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=63.05 E-value=6.5 Score=33.87 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=20.9
Q ss_pred CCCCeEEEecCCccHHHHHHH-hhCC
Q 036971 195 QNITRLVDVGGGLGITLSDHN-FQIP 219 (221)
Q Consensus 195 ~~~~~vvDVGGG~G~~~~~l~-~~~P 219 (221)
+...+++|||++.|.++..++ +..|
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~ 250 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKG 250 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcC
Confidence 456899999999999999887 5554
No 459
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=62.91 E-value=8 Score=27.29 Aligned_cols=34 Identities=6% Similarity=-0.011 Sum_probs=30.5
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.-++..|.+.+|+ +.+ -+++.+.+|..+|+-.+-
T Consensus 33 ~~nvp~L~~~TGm-PRR----TiQd~I~aL~elgI~~~F 66 (117)
T 3ke2_A 33 RHNLLSLGKLTGM-PRR----TLQDAIASFADIGIEVEF 66 (117)
T ss_dssp CCCHHHHHHHHCC-CHH----HHHHHHHTGGGGTCEEEE
T ss_pred CCCHHHHHHHHCC-CHh----HHHHHHHHhhhCCeEEEE
Confidence 4499999999999 887 899999999999998874
No 460
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=62.71 E-value=8.8 Score=25.93 Aligned_cols=34 Identities=12% Similarity=0.321 Sum_probs=28.3
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCC 92 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~ 92 (221)
.+.++++||+.+|+ +++ .|.|+++....+.+-+.
T Consensus 19 ~~~~~~~lA~~~~~-S~~----~l~r~fk~~~G~s~~~~ 52 (107)
T 2k9s_A 19 SNFDIASVAQHVCL-SPS----RLSHLFRQQLGISVLSW 52 (107)
T ss_dssp SSCCHHHHHHHTTS-CHH----HHHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCC-CHH----HHHHHHHHHHCcCHHHH
Confidence 37999999999999 888 99999887776665554
No 461
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=62.65 E-value=5.2 Score=31.17 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=31.9
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-++||..+|+ .+. .+.|+|..|...|+++..
T Consensus 193 ~lt~~~lA~~lG~-sr~----tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 193 KLSHQAIAEAIGS-TRV----TVTRLLGDLREKKMISIH 226 (243)
T ss_dssp CCCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCC-cHH----HHHHHHHHHHHCCCEEEc
Confidence 6899999999999 887 999999999999999985
No 462
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=62.63 E-value=5.2 Score=30.58 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=31.9
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-++||..+|+ .+. .+.|+|..|...|+++..
T Consensus 177 ~~t~~~lA~~lg~-sr~----tvsR~l~~l~~~g~I~~~ 210 (227)
T 3d0s_A 177 DLTQEEIAQLVGA-SRE----TVNKALADFAHRGWIRLE 210 (227)
T ss_dssp CCCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC-cHH----HHHHHHHHHHHCCCEEec
Confidence 6899999999999 887 999999999999999985
No 463
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=62.35 E-value=5.4 Score=30.40 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-++||..+|+ .+. .+.|+|..|...|++...
T Consensus 178 ~~t~~~lA~~lg~-sr~----tvsR~l~~l~~~g~I~~~ 211 (227)
T 3dkw_A 178 PVAKQLVAGHLSI-QPE----TFSRIMHRLGDEGIIHLD 211 (227)
T ss_dssp CSCTHHHHHHTTS-CHH----HHHHHHHHHHHHTSEEES
T ss_pred cCCHHHHHHHhCC-CHH----HHHHHHHHHHHCCcEEec
Confidence 6789999999999 887 999999999999999985
No 464
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=62.23 E-value=4.3 Score=31.48 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=32.5
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..++-.+||+.+|+ ... .++.-|+.|...|+++..
T Consensus 34 ~~L~e~~La~~lgV-SRt----pVREAL~~L~~eGlv~~~ 68 (218)
T 3sxy_A 34 EKLNVRELSEKLGI-SFT----PVRDALLQLATEGLVKVV 68 (218)
T ss_dssp CEECHHHHHHHHTC-CHH----HHHHHHHHHHHHTSEEEE
T ss_pred CEeCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEEe
Confidence 57899999999999 777 899999999999999986
No 465
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=60.79 E-value=1.8 Score=38.75 Aligned_cols=69 Identities=10% Similarity=0.185 Sum_probs=0.0
Q ss_pred HhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCC-ceeeeccCCCCcceecccccccc-ccCCC
Q 036971 39 VNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFN-ILCCSFSTHGVRLYSLAPVAKYY-VSDQN 116 (221)
Q Consensus 39 v~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g-ll~~~~~~~~~~~y~lt~~s~~L-~~~~~ 116 (221)
++..|...|...+ ..++.++||+.+|+ ++. .+-+.+..|.+.| ++.-... ....|.+|+-++.+ ..+.|
T Consensus 6 ~~~~iL~~l~~~~--~~~~~~~~a~~~~~-~~~----~v~~~~~~L~~~~~~v~~~~~--~~~~~~Lt~eg~~~~~~G~p 76 (508)
T 3l4g_A 6 VAELLLRRLEASD--GGLDSAELAAELGM-EHQ----AVVGAVKSLQALGEVIEAELR--STKHWELTAEGEEIAREGSH 76 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcC--CCcCHHHHHHHcCC-CHH----HHHHHHHHHHhCCCeEEEEEE--EEEEEEECHHHHHHHHcCCH
Confidence 4455667776642 26799999999999 888 8999999999998 8876532 46789999999855 45665
No 466
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=60.35 E-value=6 Score=31.27 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=32.5
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..++-.+||+.+|+ ... .++.-|+.|...|+|+..
T Consensus 50 ~~L~e~~La~~lgV-SRt----pVREAL~~L~~eGlv~~~ 84 (239)
T 2hs5_A 50 ARLSEPDICAALDV-SRN----TVREAFQILIEDRLVAHE 84 (239)
T ss_dssp CEECHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEE
T ss_pred CEeCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEEe
Confidence 57899999999999 776 899999999999999987
No 467
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=60.22 E-value=5.6 Score=32.51 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 184 INKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 184 ~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+..+++.+. . ....|+|++||+|..+.+.++.
T Consensus 225 ~~~~i~~~~-~-~~~~vlD~f~GsGt~~~~a~~~ 256 (297)
T 2zig_A 225 AERLVRMFS-F-VGDVVLDPFAGTGTTLIAAARW 256 (297)
T ss_dssp HHHHHHHHC-C-TTCEEEETTCTTTHHHHHHHHT
T ss_pred HHHHHHHhC-C-CCCEEEECCCCCCHHHHHHHHc
Confidence 334555544 2 3468999999999999887653
No 468
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=60.17 E-value=5 Score=34.48 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=17.1
Q ss_pred CCeEEEecCCccHHHHHHHhh
Q 036971 197 ITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~ 217 (221)
.-+|+|+||++|..+..+...
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ 73 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRD 73 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHH
T ss_pred ceEEEecCCCCCchHHHHHHH
Confidence 568999999999988766543
No 469
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=59.87 E-value=16 Score=31.92 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=33.0
Q ss_pred cCchHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhhC
Q 036971 164 TDSRFNEVFNNGMIGQTSFVINKIVESYKGFQNITRLVDVGGGLGITLSDHNFQI 218 (221)
Q Consensus 164 ~~p~~~~~F~~aM~~~~~~~~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 218 (221)
..|+....|-..++.+-. +.|-.. . .-+||++|+|+|.++..+++..
T Consensus 113 TAPeiS~~FGe~la~~~~---~~~~~~-g----~~~ivE~GaG~GtLa~DiL~~l 159 (432)
T 4f3n_A 113 TAPELSPLFAQTLARPVA---QALDAS-G----TRRVMEFGAGTGKLAAGLLTAL 159 (432)
T ss_dssp SCGGGHHHHHHHHHHHHH---HHHHHH-T----CCEEEEESCTTSHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHH---HHHHhc-C----CCeEEEeCCCccHHHHHHHHHH
Confidence 568888888888765532 222211 1 3589999999999998887653
No 470
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=59.86 E-value=6 Score=30.86 Aligned_cols=34 Identities=29% Similarity=0.207 Sum_probs=32.1
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-++||..+|+ .+. .+.|+|..|...|+++..
T Consensus 177 ~~t~~~iA~~lG~-sr~----tvsR~l~~L~~~g~I~~~ 210 (250)
T 3e6c_C 177 PLSQKSIGEITGV-HHV----TVSRVLASLKRENILDKK 210 (250)
T ss_dssp CCCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHhCC-cHH----HHHHHHHHHHHCCCeEeC
Confidence 6899999999999 887 999999999999999985
No 471
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=59.26 E-value=6.1 Score=30.47 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-++||..+|+ .+. .+.|+|..|...|+++..
T Consensus 186 ~~t~~~lA~~lG~-sr~----tvsR~l~~l~~~glI~~~ 219 (232)
T 1zyb_A 186 KVKMDDLARCLDD-TRL----NISKTLNELQDNGLIELH 219 (232)
T ss_dssp ECCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSCEEE
T ss_pred cCCHHHHHHHhCC-Chh----HHHHHHHHHHHCCCEEec
Confidence 5899999999999 887 999999999999999985
No 472
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=59.24 E-value=6.1 Score=30.90 Aligned_cols=44 Identities=20% Similarity=0.118 Sum_probs=36.3
Q ss_pred CCC-CHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecc
Q 036971 54 AEL-SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLA 105 (221)
Q Consensus 54 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt 105 (221)
..+ +-.+||+.+|+ ... .++.-|+.|...|+++... +.|.|-..
T Consensus 29 ~~LPsE~eLa~~~gV-SR~----tVReAL~~L~~eGlv~~~~---g~G~~V~~ 73 (239)
T 1hw1_A 29 TILPAERELSELIGV-TRT----TLREVLQRLARDGWLTIQH---GKPTKVNN 73 (239)
T ss_dssp SBCCCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEET---TEEEEECC
T ss_pred CCCCCHHHHHHHHCC-CHH----HHHHHHHHHHHCCcEEEec---CCCcEeeC
Confidence 578 79999999999 776 8999999999999999873 34555543
No 473
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=58.87 E-value=6.2 Score=23.57 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=19.1
Q ss_pred hChhhHHHhcCCCCCCCHHHHHhhCCCCCCc
Q 036971 41 LDVLDIINKAGPGAELSASEIASQIPTKNPE 71 (221)
Q Consensus 41 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~ 71 (221)
..|+..+.. +.|..|||+.+|+ .+.
T Consensus 4 ~~vl~l~~~-----g~s~~eIA~~l~i-s~~ 28 (61)
T 2jpc_A 4 RQVLKLIDE-----GYTNHGISEKLHI-SIK 28 (61)
T ss_dssp HHHHHHHHT-----SCCSHHHHHHTCS-CHH
T ss_pred HHHHHHHHc-----CCCHHHHHHHhCC-CHH
Confidence 345666544 6999999999999 775
No 474
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=58.80 E-value=3.4 Score=32.24 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=44.8
Q ss_pred ChhhHHHhcCCCCCCCHHHHHhhC--------CCCCCcchhhhHHHHHHHHhcCCceeeeccC--CCC--cceecccccc
Q 036971 42 DVLDIINKAGPGAELSASEIASQI--------PTKNPEGAAKMLDRVLGLLVSFNILCCSFST--HGV--RLYSLAPVAK 109 (221)
Q Consensus 42 glfd~L~~~g~~~~~t~~eLA~~~--------g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~~~--~~y~lt~~s~ 109 (221)
-|...|.+ +|.+--||++.+ ++ ++. .+...|+-|...|++...... +.+ -.|++|+.++
T Consensus 40 ~IL~lL~~----~p~~GYeL~~~l~~~~~~~~~~-s~g----~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr 110 (204)
T 3l9f_A 40 IILGILSK----KERSGYEINDILQNQLSYFYDG-TYG----MIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGK 110 (204)
T ss_dssp HHHHHTSS----CCEEHHHHHHHHHHTSTTTEEC-CTT----CHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHH
T ss_pred HHHHHHHc----CCCCHHHHHHHHHHHhCCccCC-Ccc----hHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHH
Confidence 45667765 699999999887 46 666 899999999999999865321 111 2599999886
No 475
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=58.79 E-value=12 Score=29.55 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=29.3
Q ss_pred ChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 42 DVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 42 glfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
-|+..|++ | .|.+.++||+.+|. +. ..+...|..+..++.+
T Consensus 26 ~llr~la~-G--rpv~~~~LA~~~g~-~~-------~~v~~~L~~l~~~~~D 66 (220)
T 3f2g_A 26 PLLRELAK-G--RPVSRTTLAGILDW-PA-------ERVAAVLEQATSTEYD 66 (220)
T ss_dssp HHHHHHTT-T--SCBCHHHHHHHHTC-CH-------HHHHHHHHHCTTCEEC
T ss_pred HHHHHHhc-C--CCCCHHHHHHHhCc-CH-------HHHHHHHHhCCcEEEC
Confidence 34556885 3 79999999999999 54 4555555555667765
No 476
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=58.76 E-value=30 Score=27.89 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=38.8
Q ss_pred hhChhhHHHhcCCCCCCCHHHHHhhC-----CCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceec
Q 036971 40 NLDVLDIINKAGPGAELSASEIASQI-----PTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSL 104 (221)
Q Consensus 40 ~lglfd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~l 104 (221)
...++..++. ++.+..+|++.+ ++ +.. .+.+.|+.|...|++.+. ++.|+.
T Consensus 284 ~~~~l~~la~----g~~~~~~l~~~~~~~~~~~-~~~----~~~~~l~~L~~~gli~~~-----~~~y~~ 339 (350)
T 2qen_A 284 YVDILRAIAL----GYNRWSLIRDYLAVKGTKI-PEP----RLYALLENLKKMNWIVEE-----DNTYKI 339 (350)
T ss_dssp HHHHHHHHHT----TCCSHHHHHHHHHHTTCCC-CHH----HHHHHHHHHHHTTSEEEE-----TTEEEE
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHhCCC-CHH----HHHHHHHHHHhCCCEEec-----CCEEEE
Confidence 3456777776 367889998776 77 665 789999999999999985 455553
No 477
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=57.88 E-value=9.9 Score=30.02 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=35.8
Q ss_pred CCC-CHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceec
Q 036971 54 AEL-SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSL 104 (221)
Q Consensus 54 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~l 104 (221)
..+ +..+||+..|+ ... -+++-|+.|...|++.... +.|.|-.
T Consensus 27 ~~lPse~~La~~~~v-Sr~----tvr~Al~~L~~~g~i~~~~---g~G~~V~ 70 (239)
T 3bwg_A 27 DKLPVLETLMAQFEV-SKS----TITKSLELLEQKGAIFQVR---GSGIFVR 70 (239)
T ss_dssp CBCCCHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEEET---TTEEEEC
T ss_pred CCCcCHHHHHHHHCC-CHH----HHHHHHHHHHHCCcEEEeC---CceEEEe
Confidence 467 89999999999 776 8999999999999999873 4555554
No 478
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=57.55 E-value=7.9 Score=31.75 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=42.1
Q ss_pred hhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHH-HHhcCCceeeeccCCCCcceecccccc
Q 036971 43 VLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLG-LLVSFNILCCSFSTHGVRLYSLAPVAK 109 (221)
Q Consensus 43 lfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr-~L~~~gll~~~~~~~~~~~y~lt~~s~ 109 (221)
++..+... .+.+.+..++|+.+|+ +.. .+.+.++ +|...|++... +.....|+.+.
T Consensus 268 ~l~~l~~~-~~~~~~~~~~a~~lg~-~~~----tl~~~l~~~l~~~gli~~~-----~~g~~~t~~~~ 324 (338)
T 3pfi_A 268 YLELLTAA-KQKPIGLASIAAALSE-DEN----TIEDVIEPYLLANGYIERT-----AKGRIASAKSY 324 (338)
T ss_dssp HHHHHHHS-CSCCBCHHHHHHHTTC-CHH----HHHHTTHHHHHHTTSEEEE-----TTEEEECHHHH
T ss_pred HHHHHHHh-cCCCchHHHHHHHhCC-CHH----HHHHHHhHHHHHcCceecC-----CCcccccHHHH
Confidence 45555554 2257899999999999 887 8998888 99999999986 33445666554
No 479
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=57.31 E-value=7.3 Score=30.21 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=32.4
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
..++-.+||+.+|+ ... .++.-|+.|...|+++..
T Consensus 38 ~~L~E~~La~~lgV-SRt----pVREAl~~L~~eGlv~~~ 72 (222)
T 3ihu_A 38 QRLVETDLVAHFGV-GRN----SVREALQRLAAEGIVDLQ 72 (222)
T ss_dssp CEECHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEC
T ss_pred CccCHHHHHHHHCC-CHH----HHHHHHHHHHHCCCEEEe
Confidence 57889999999999 777 899999999999999986
No 480
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=56.27 E-value=5.7 Score=26.96 Aligned_cols=34 Identities=0% Similarity=0.044 Sum_probs=28.3
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCC 92 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~ 92 (221)
.+.|+++||+.+|+ +++ .|.|+++....+.+-+.
T Consensus 17 ~~~~~~~lA~~~~~-s~~----~l~r~fk~~~G~s~~~~ 50 (108)
T 3mn2_A 17 RPITIEKLTALTGI-SSR----GIFKAFQRSRGYSPMAF 50 (108)
T ss_dssp SCCCHHHHHHHHTC-CHH----HHHHHHHHHTSSCHHHH
T ss_pred CCCCHHHHHHHHCC-CHH----HHHHHHHHHhCcCHHHH
Confidence 37999999999999 888 99999988776655554
No 481
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=55.82 E-value=20 Score=26.67 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCc
Q 036971 30 VLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPE 71 (221)
Q Consensus 30 ~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~ 71 (221)
..-..|.+|.+ .+.+.|- ..+|+++||++.|+ ...
T Consensus 29 ~r~~Il~aa~~-----lf~~~G~-~~~tv~~IA~~agv-s~~ 63 (215)
T 2qko_A 29 RRAALVNAAIE-----VLAREGA-RGLTFRAVDVEANV-PKG 63 (215)
T ss_dssp HHHHHHHHHHH-----HHHHTCT-TTCCHHHHHHHSSS-TTT
T ss_pred HHHHHHHHHHH-----HHHHhCh-hhccHHHHHHHcCC-Ccc
Confidence 34456667666 6777653 36999999999999 553
No 482
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=55.62 E-value=6.8 Score=33.47 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=47.2
Q ss_pred hhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccccccCC
Q 036971 43 VLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYVSDQ 115 (221)
Q Consensus 43 lfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~~~~ 115 (221)
|.+.|-+. +..|++++++.+++ ... -..|.|+.|+..|++++.+. +....|.+.++-..|.++.
T Consensus 302 ll~~l~~~---p~~t~~~~~~~~~~-S~~----TA~r~L~~L~e~GiL~~~~~-gR~~~y~~~~~l~il~~~~ 365 (373)
T 3eqx_A 302 LVQVIFEQ---PYCRIQNLVESGLA-KRQ----TASVYLKQLCDIGVLEEVQS-GKEKLFVHPKFVTLMTKDS 365 (373)
T ss_dssp HHHHHHHC---SEEEHHHHHHTSSS-CHH----HHHHHHHHHHHTTSCEEC---CCSCEEECHHHHHHHHSSC
T ss_pred HHHHHHHC---CCccHHHHHHHhCc-CHH----HHHHHHHHHHHCCcEEEeCC-CCceEeehHHHHHHHhccC
Confidence 56777775 35899999999999 766 78999999999999998731 1233577766666665554
No 483
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=55.20 E-value=6.8 Score=29.80 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=31.4
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCC 92 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~ 92 (221)
++|-.+||..+|+ .+. .+.|+|..|...|+++.
T Consensus 167 ~~t~~~lA~~lg~-sr~----tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 167 GLNTEEIALMLGT-TRQ----TVSVLLNDFKKMGILER 199 (220)
T ss_dssp SSCHHHHHHHHTS-CHH----HHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCC-cHH----HHHHHHHHHHHCCCEEE
Confidence 7899999999999 887 99999999999999998
No 484
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=54.87 E-value=7.3 Score=36.15 Aligned_cols=21 Identities=5% Similarity=-0.043 Sum_probs=18.5
Q ss_pred CCeEEEecCCccHHHHHHHhh
Q 036971 197 ITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 197 ~~~vvDVGGG~G~~~~~l~~~ 217 (221)
..+|||+|||+|.++..+++.
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ 560 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLG 560 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHT
T ss_pred CCcEEEeeechhHHHHHHHHC
Confidence 469999999999999988764
No 485
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=54.86 E-value=11 Score=27.67 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=43.1
Q ss_pred hhhHHHhcCCCCCCCHHHHHhhC-------CCCCCcchhhhHHHHHHHHhcCCceeeeccCC---C--Ccceeccccccc
Q 036971 43 VLDIINKAGPGAELSASEIASQI-------PTKNPEGAAKMLDRVLGLLVSFNILCCSFSTH---G--VRLYSLAPVAKY 110 (221)
Q Consensus 43 lfd~L~~~g~~~~~t~~eLA~~~-------g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~---~--~~~y~lt~~s~~ 110 (221)
|...|.+ ++.+--+|.+.+ ++ ++. .|...|+-|...|+++...... + .-.|++|+.++.
T Consensus 49 IL~lL~~----~p~~GYeI~k~l~~~~~~~~i-s~g----tLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~ 119 (148)
T 2zfw_A 49 VLAVLRH----EDSYGTELIQHLETHWPNYRL-SDT----VLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDD 119 (148)
T ss_dssp HHHHHTT----CCEEHHHHHHHHHHHCTTEEC-CSH----HHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCS
T ss_pred HHHHHHh----CCCcHHHHHHHHHHHcCCCCC-Chh----HHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHH
Confidence 4455665 588888877766 46 666 8999999999999998753210 1 124888888875
Q ss_pred cc
Q 036971 111 YV 112 (221)
Q Consensus 111 L~ 112 (221)
..
T Consensus 120 ~l 121 (148)
T 2zfw_A 120 RS 121 (148)
T ss_dssp TT
T ss_pred HH
Confidence 44
No 486
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=54.79 E-value=13 Score=29.25 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=35.6
Q ss_pred CCC-CHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccc
Q 036971 54 AEL-SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAP 106 (221)
Q Consensus 54 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~ 106 (221)
..+ |-.+||+..|+ +.. -+++-|+.|...|++.... +.|.|-..+
T Consensus 31 ~~lPse~~La~~~~v-Sr~----tvr~Al~~L~~~G~i~~~~---g~G~~V~~~ 76 (236)
T 3edp_A 31 MLMPNETALQEIYSS-SRT----TIRRAVDLLVEEGLVVRKN---GVGLYVQPK 76 (236)
T ss_dssp C--CCHHHHHHHTTC-CHH----HHHHHHHHHHHTTSEEEET---TTEEEECCC
T ss_pred CCCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCCEEEEC---CceEEEccC
Confidence 467 89999999999 776 8999999999999999874 456665443
No 487
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=54.47 E-value=7.3 Score=30.77 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-.+||..+|+ .+. .+.|+|..|...|+++..
T Consensus 217 ~lt~~~lA~~lG~-sr~----tvsR~l~~L~~~GlI~~~ 250 (260)
T 3kcc_A 217 KITRQEIGQIVGC-SRE----TVGRILKMLEDQNLISAH 250 (260)
T ss_dssp ECCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEEC
T ss_pred cCCHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEEEc
Confidence 6899999999999 887 999999999999999985
No 488
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=54.40 E-value=8.4 Score=29.35 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=31.6
Q ss_pred CCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 55 ELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 55 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|-.+||..+|+ .+. .+.|+|..|...|++...
T Consensus 163 ~~t~~~lA~~lG~-sr~----tvsR~l~~L~~~g~I~~~ 196 (222)
T 1ft9_A 163 DFTVEEIANLIGS-SRQ----TTSTALNSLIKEGYISRQ 196 (222)
T ss_dssp CCCHHHHHHHHCS-CHH----HHHHHHHHHHHTTSSEEC
T ss_pred cCCHHHHHHHhCC-cHH----HHHHHHHHHHHCCcEEEc
Confidence 4899999999999 887 999999999999999985
No 489
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=54.29 E-value=9.6 Score=30.20 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=36.3
Q ss_pred CCC-CHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceecc
Q 036971 54 AEL-SASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLA 105 (221)
Q Consensus 54 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt 105 (221)
..+ |..+||+..|+ +.. -+++-|+.|...|++.... +.|.|-..
T Consensus 32 ~~lPse~~La~~~~v-Sr~----tvr~Al~~L~~~G~i~~~~---g~G~~V~~ 76 (243)
T 2wv0_A 32 MPLPSEREYAEQFGI-SRM----TVRQALSNLVNEGLLYRLK---GRGTFVSK 76 (243)
T ss_dssp CBCCCHHHHHHHHTC-CHH----HHHHHHHHHHHTTSEEECT---TSCEEECC
T ss_pred CCCcCHHHHHHHHCc-CHH----HHHHHHHHHHHCCcEEEeC---CCeEEEeC
Confidence 467 88999999999 776 8999999999999999863 45666544
No 490
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=54.29 E-value=7.3 Score=33.16 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=47.2
Q ss_pred ChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccccccccCC
Q 036971 42 DVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVAKYYVSDQ 115 (221)
Q Consensus 42 glfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s~~L~~~~ 115 (221)
.|.+.|-.. .-.+.+++++.+|+ ... -.+|.|+.|+..|++++... +....|...++-..|..+.
T Consensus 301 ~ll~~l~~~---p~~t~~~~~~~~gv-S~~----Ta~r~L~~L~e~GiL~~~~~-gR~~~y~~~~~~~~l~~~~ 365 (373)
T 2qc0_A 301 ELVQVIFEQ---PYCRIQNLVESGLA-KRQ----TASVYLKQLCDIGVLEEVQS-GKEKLFVHPKFVTLMTKDS 365 (373)
T ss_dssp HHHHHHHHC---SEEEHHHHHHTSSS-CHH----HHHHHHHHHHHTTSCEEC---CCSCEEECHHHHHHHHSSC
T ss_pred HHHHHHHhC---CcccHHHHHHHhCC-CHH----HHHHHHHHHHHCCcEEEecC-CCceEEehHHHHHHHccCC
Confidence 356666663 24689999999999 777 89999999999999998731 1233576666666665543
No 491
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=54.11 E-value=6.4 Score=26.72 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=28.8
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCC 92 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~ 92 (221)
.+.++++||+.+|+ +++ .|.|+++....+.+-+.
T Consensus 20 ~~~~~~~lA~~~~~-S~~----~l~r~fk~~~G~s~~~~ 53 (108)
T 3oou_A 20 EGMSLKTLGNDFHI-NAV----YLGQLFQKEMGEHFTDY 53 (108)
T ss_dssp SCCCHHHHHHHHTS-CHH----HHHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCc-CHH----HHHHHHHHHHCcCHHHH
Confidence 37999999999999 888 99999988877666554
No 492
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=53.58 E-value=10 Score=30.95 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 28 AIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 28 g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
++|....+....+ .+ ..+|+++|++.+|+ ....++..|..+|++...
T Consensus 192 ~YW~~~i~~~L~~---------~~--~~isi~~is~~Tgi--------~~~Dii~tL~~l~~l~~~ 238 (276)
T 3to7_A 192 AYWSDTLITLLVE---------HQ--KEITIDEISSMTSM--------TTTDILHTAKTLNILRYY 238 (276)
T ss_dssp HHHHHHHHHHHHH---------TC--SEEEHHHHHHHHCB--------CHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHh---------cC--CceeHHHHHHHhCC--------CHHHHHHHHHHCCCEEEe
Confidence 5566555555433 23 47999999999999 668899999999999986
No 493
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=53.30 E-value=12 Score=29.93 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=33.1
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
|.+|+++|+..+|+ ++. +.+..|+.|...|++..+
T Consensus 180 g~vt~~~L~~~lgW-~~~----Ra~~~L~~l~~~G~lwvD 214 (233)
T 1u5t_A 180 GYSSISLLKANLGW-EAV----RSKSALDEMVANGLLWID 214 (233)
T ss_dssp SCCBHHHHHHHHCC-CSH----HHHHHHHHHHHTTSSEEE
T ss_pred CcCcHHHHHHHhCC-CHH----HHHHHHHHHHHCCCEEEe
Confidence 58999999999999 887 899999999999999998
No 494
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=52.95 E-value=34 Score=22.79 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=36.5
Q ss_pred CCCCHHHHHhhC----CCCCCcchhhhHHHHHHHHhcCCceeeeccCCCCcceeccccc
Q 036971 54 AELSASEIASQI----PTKNPEGAAKMLDRVLGLLVSFNILCCSFSTHGVRLYSLAPVA 108 (221)
Q Consensus 54 ~~~t~~eLA~~~----g~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~y~lt~~s 108 (221)
.+.+...|+..+ .+ ++. -...|.+-|+-++..|.|.+....|..|.|++++-.
T Consensus 25 ~GsS~~AI~KyI~~~y~~-~~~-~~~~l~~aLk~~v~~G~l~q~Kg~GasGsfkl~~~~ 81 (90)
T 1hst_A 25 GGSSRQSIQKYIKSHYKV-GHN-ADLQIKLSIRRLLAAGVLKQTKGVGASGSFRLAKSD 81 (90)
T ss_dssp SCEEHHHHHHHHHHHSCC-CTT-HHHHHHHHHHHHHHTTSEEEECCSSCCCEEEECC--
T ss_pred CCCCHHHHHHHHHHHccC-chh-HHHHHHHHHHHHHHcCCeeeecCCCccceeecCCCc
Confidence 467777776544 34 443 334688899999999999998544456799988643
No 495
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=52.95 E-value=11 Score=25.81 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=31.7
Q ss_pred hHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceee
Q 036971 45 DIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCC 92 (221)
Q Consensus 45 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~ 92 (221)
+.|.+.-. .+.++++||+.+|+ +++ .|.|+++....+.+-+.
T Consensus 14 ~~i~~~~~-~~~~~~~lA~~~~~-S~~----~l~r~fk~~~G~s~~~~ 55 (113)
T 3oio_A 14 SLMEANIE-EPLSTDDIAYYVGV-SRR----QLERLFKQYLGTVPSKY 55 (113)
T ss_dssp HHHHTCSS-SCCCHHHHHHHHTS-CHH----HHHHHHHHHTSSCHHHH
T ss_pred HHHHhhhc-CCCCHHHHHHHHCc-CHH----HHHHHHHHHHCcCHHHH
Confidence 34444311 47999999999999 888 99999988777665554
No 496
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=52.27 E-value=17 Score=24.22 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=44.9
Q ss_pred HHHhhhHHHHHHHHHHhhChhhHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCce
Q 036971 24 VLGSAIVLPAVFQAVVNLDVLDIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNIL 90 (221)
Q Consensus 24 ~~~~g~~~~~aL~~av~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll 90 (221)
+++......-..+..++--|+......| ++.+..+.-..+++ |+. ...++.++++..|.+
T Consensus 29 ~LC~~lrL~P~~YL~~K~~Li~E~~k~g--~~lkk~da~~~~ki-D~~----K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 29 QLCIQLKILPKPYLVLKEVMFRELLKTG--GNLSKSACRELLNI-DPI----KANRIYDFFQSQNWM 88 (88)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHS--SCCCHHHHHHHTTS-CHH----HHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhC--CCccHHHHHHHHcc-cHH----HHHHHHHHHHHcCCC
Confidence 4455555555666666666666666654 56889998899999 888 999999999998864
No 497
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=51.71 E-value=13 Score=33.37 Aligned_cols=32 Identities=22% Similarity=0.116 Sum_probs=22.1
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHhh
Q 036971 184 INKIVESYKGFQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 184 ~~~~l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+..+++... -. ..+|+|.+||+|.++.++.+.
T Consensus 234 v~lmv~ll~-p~-~~~VlDPaCGSG~fLi~a~~~ 265 (544)
T 3khk_A 234 VTLIVEMLE-PY-KGRVYDPAMGSGGFFVSSDKF 265 (544)
T ss_dssp HHHHHHHHC-CC-SEEEEESSCTTCHHHHHHHHH
T ss_pred HHHHHHHHh-cC-CCeEeCcccCcCcHHHHHHHH
Confidence 444455544 22 239999999999999887653
No 498
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=51.40 E-value=4 Score=28.56 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=32.4
Q ss_pred CCCCHHHHHhhCCCCCCcchhhhHHHHHHHHhcCCceeee
Q 036971 54 AELSASEIASQIPTKNPEGAAKMLDRVLGLLVSFNILCCS 93 (221)
Q Consensus 54 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~gll~~~ 93 (221)
.-+|+..|++++++ +-. +.++.||.|...|++..+
T Consensus 59 KlITpsvlseRlkI-~gS----LAR~aLreL~~kGlIk~V 93 (108)
T 3iz6_V 59 KQITPSVLSERLRI-NGS----LARQAIKDLESRGAIRVV 93 (108)
T ss_dssp SSEEEHHHHHHHHT-CCH----HHHHHHHHHHHHHTSCEE
T ss_pred eEEeHHHHHhhhcc-cHH----HHHHHHHHHHHCCCEEEE
Confidence 46999999999999 887 899999999999999987
No 499
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=49.69 E-value=12 Score=32.06 Aligned_cols=24 Identities=21% Similarity=0.014 Sum_probs=20.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHhh
Q 036971 194 FQNITRLVDVGGGLGITLSDHNFQ 217 (221)
Q Consensus 194 ~~~~~~vvDVGGG~G~~~~~l~~~ 217 (221)
+....++||+|++.|.++..++++
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r 232 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR 232 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC
Confidence 445689999999999999988764
No 500
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=49.64 E-value=15 Score=25.38 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=25.3
Q ss_pred hHHHhcCCCCCCCHHHHHhhCCCCCCcchhhhHHHHHHH
Q 036971 45 DIINKAGPGAELSASEIASQIPTKNPEGAAKMLDRVLGL 83 (221)
Q Consensus 45 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~ 83 (221)
+.|.+.-. .+.++++||+.+|+ +++ .|.|+++.
T Consensus 14 ~~i~~~~~-~~~~~~~lA~~~~~-S~~----~l~r~fk~ 46 (120)
T 3mkl_A 14 TVINNNIA-HEWTLARIASELLM-SPS----LLKKKLRE 46 (120)
T ss_dssp HHHHTSTT-SCCCHHHHHHHTTC-CHH----HHHHHHHH
T ss_pred HHHHHhcc-CCCCHHHHHHHHCc-CHH----HHHHHHHH
Confidence 34444321 37999999999999 888 89988876
Done!