BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036972
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 124/267 (46%), Gaps = 23/267 (8%)
Query: 3 DMARGERSPTVFPIWQRQILNARNPPQVTCIHHEYD-----EINTNEVPSDNMAHKS--- 54
DMARG T+ P R +L AR+PPQ H EY ++ SD++ +
Sbjct: 175 DMARG-LDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSI 233
Query: 55 FFFSLKGIKALR--NQLPFHLKDCSTFELLLAFLWKCRTIALKLQPEEIAKVSCIVNVRG 112
F + + I AL+ ++ + S++E+L +W+C A L+ ++ K+ + R
Sbjct: 234 FKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRA 293
Query: 113 KRYKMDIPPGYYGNAFTFSAVCSTAEQLCKNPIGYAVELVKKAKAQMNEEYIRSVADLMV 172
R + +PPGY+GN + + A L P+ YA + A A+M+ +Y+RS D +
Sbjct: 294 -RLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLE 352
Query: 173 IKGRRIKSSTRG-------NFIVSDLRNVGLGDVDFGWGKPIYXX-XXXXXXXFSFCVKY 224
++ +K+ RG N ++ + + D DFGWG+PI+ SF +
Sbjct: 353 LQ-PDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPS 411
Query: 225 QSKNGEPGILVPICLPQSAMERFQEEL 251
+ +G + V I L M+ FQ L
Sbjct: 412 PTNDGS--MSVAISLQGEHMKLFQSFL 436
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 124/267 (46%), Gaps = 23/267 (8%)
Query: 3 DMARGERSPTVFPIWQRQILNARNPPQVTCIHHEYD-----EINTNEVPSDNMAHKS--- 54
DMARG T+ P R +L AR+PPQ H EY ++ SD++ +
Sbjct: 175 DMARG-LDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSI 233
Query: 55 FFFSLKGIKALR--NQLPFHLKDCSTFELLLAFLWKCRTIALKLQPEEIAKVSCIVNVRG 112
F + + I AL+ ++ + S++E+L +W+C A L+ ++ K+ + R
Sbjct: 234 FKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRA 293
Query: 113 KRYKMDIPPGYYGNAFTFSAVCSTAEQLCKNPIGYAVELVKKAKAQMNEEYIRSVADLMV 172
R + +PPGY+GN + + A L P+ YA + A A+M+ +Y+RS D +
Sbjct: 294 -RLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLE 352
Query: 173 IKGRRIKSSTRG-------NFIVSDLRNVGLGDVDFGWGKPIYXX-XXXXXXXFSFCVKY 224
++ +K+ RG N ++ + + D DFGWG+PI+ SF +
Sbjct: 353 LQ-PDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPS 411
Query: 225 QSKNGEPGILVPICLPQSAMERFQEEL 251
+ +G + V I L M+ FQ L
Sbjct: 412 PTNDGS--MSVAISLQGEHMKLFQSFL 436
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 125/267 (46%), Gaps = 23/267 (8%)
Query: 3 DMARGERSPTVFPIWQRQILNARNPPQVTCIHHEYD-----EINTNEVPSDNMAHKS--- 54
DMARG T+ P R +L AR+PPQ H EY +++ SD++ +
Sbjct: 172 DMARG-LDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSI 230
Query: 55 FFFSLKGIKALR--NQLPFHLKDCSTFELLLAFLWKCRTIALKLQPEEIAKVSCIVNVRG 112
F + + I AL+ ++ + S++E+L +W+C A L+ ++ K+ + R
Sbjct: 231 FKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRA 290
Query: 113 KRYKMDIPPGYYGNAFTFSAVCSTAEQLCKNPIGYAVELVKKAKAQMNEEYIRSVADLMV 172
R + +PPGY+GN + + A L P+ YA + A A+M+ +Y+RS D +
Sbjct: 291 -RLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLE 349
Query: 173 IKGRRIKSSTRG-------NFIVSDLRNVGLGDVDFGWGKPIYXX-XXXXXXXFSFCVKY 224
++ +K+ RG N ++ + + D DFGWG+PI+ SF +
Sbjct: 350 LQ-PDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPS 408
Query: 225 QSKNGEPGILVPICLPQSAMERFQEEL 251
+ +G + V I L M+ FQ L
Sbjct: 409 PTNDGS--MSVAISLQGEHMKLFQSFL 433
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 14/169 (8%)
Query: 45 VPSDNMAHKSFFFSLKGIKALRNQL--PFHLKDCSTFELLLAFLWKCRTIALKLQPEEIA 102
VP +N+ K F F + I ALR Q K+ S +L++A++WK I +
Sbjct: 209 VPDENVVMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWK-HVIDVTRAKYGAK 267
Query: 103 KVSCIVNVRGKRYKMDIPPGYY--GNAFT--FSAVCSTAEQLCKNPIGYAVELVKKAKAQ 158
+V R +M+ P +Y GN T F+AV + ++ + IG ++K +
Sbjct: 268 NKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDD 327
Query: 159 MNEEYIRSVADLMVIKGRRIKSSTRGNFIVSDLRNVGLGDVDFGWGKPI 207
N E ++ + L ++ + + S T +G D+DFGWGKP+
Sbjct: 328 HNHELLKGMTCLYELEPQELLSFTSWC-------RLGFYDLDFGWGKPL 369
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 73 LKDCSTFELLLAFLWKCRTIALKLQPEEIAK-----VSCIVNVRGKRYKMDIPPGYYGNA 127
L ++F + A++W C + EEI + C + R + + +PP Y+GNA
Sbjct: 264 LTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGXEFFGCAADCRAQ-FNPPLPPSYFGNA 322
Query: 128 FT-FSAVCSTAEQLCKNPIGYAVELVKKA--KAQMNEEYIRSVADLMVIKGRRIKSSTRG 184
+ A + K AVEL+ +A K +EE+I S + K +
Sbjct: 323 LVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEEWILSGSWFKEYD----KVDAKR 378
Query: 185 NFIVSDLRNVGLGDVDFGWGKP 206
+ V+ + L DFGWG+P
Sbjct: 379 SLSVAGSPKLDLYAADFGWGRP 400
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 14/209 (6%)
Query: 46 PSDNMAHKSFFFSLKGIKALRN----QLPFHLKDCSTFELLLAFLWKCRTIALKLQPEEI 101
PSD + +F + I L++ QLP L+ S+F + A++W C IA K + +++
Sbjct: 241 PSDKL-RATFILTRAVINQLKDRVLAQLP-TLEYVSSFTVACAYIWSC--IA-KSRNDKL 295
Query: 102 AKVSCIVNVRGKRYKMDIPPGYYGNAFT-FSAVCSTAEQLCKNPIGYAVELVKKAKAQMN 160
++ R R K IP Y+GN +A+ T + K A +L+ + +
Sbjct: 296 QLFGFPIDRRA-RMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTL 354
Query: 161 EEYIRSVA--DLMVIKGRRIKSSTRGNFIVSDLRNVGLGDVDFGWGKPIYXXXXXXXXXF 218
+Y V D+ + VS + D+DFGWGKP
Sbjct: 355 TDYKDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGKPKKLETVSIDHNG 414
Query: 219 SFCVKYQSKNGEPGILVPICLPQSAMERF 247
+ + K + + +C+ + ME F
Sbjct: 415 AISIN-SCKESNEDLEIGVCISATQMEDF 442
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 46 PSDNMAHKSFFFSLKGIKALRN----QLPFHLKDCSTFELLLAFLWKCRTIALKLQPEEI 101
PSD + +F + I L++ QLP L+ S+F + A++W C IA K + +++
Sbjct: 241 PSDKL-RATFILTRAVINQLKDRVLAQLP-TLEYVSSFTVACAYIWSC--IA-KSRNDKL 295
Query: 102 AKVSCIVNVRGKRYKMDIPPGYYGNAFT-FSAVCSTAEQLCKNPIGYAVELVKKAKAQMN 160
++ R R K IP Y+GN +A+ T + K A +L+ + +
Sbjct: 296 QLFGFPIDRRA-RXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTL 354
Query: 161 EEYIRSVA--DLMVIKGRRIKSSTRGNFIVSDLRNVGLGDVDFGWGKP 206
+Y V D + VS + D DFGWGKP
Sbjct: 355 TDYKDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDFGWGKP 402
>pdb|3SYJ|A Chain A, Crystal Structure Of The Haemophilus Influenzae Hap
Adhesin
Length = 1011
Score = 27.7 bits (60), Expect = 7.7, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 169 DLMVIKGRRIKSSTRGNFIVSDLRNVGLGDVDFG 202
D V+ + + +IVS NVG DVDFG
Sbjct: 50 DFSVVSRNGVAALVENQYIVSVAHNVGYTDVDFG 83
>pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
Length = 440
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 143 NPIGYAVELVKKAKAQMNEEYIRSVADLMVIKGRRIKSSTRGNFIVSDLRNVG 195
+PI +E+V K EE + + ++ + RRI N++ S LR +
Sbjct: 342 DPIDELIEIVAKVTGVPREEILSNSRNVKALTARRIGMYVAKNYLKSSLRTIA 394
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,809,511
Number of Sequences: 62578
Number of extensions: 293649
Number of successful extensions: 464
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 10
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)