Query 036972
Match_columns 275
No_of_seqs 176 out of 1221
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:16:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03157 spermidine hydroxycin 100.0 6.4E-49 1.4E-53 370.9 26.2 250 1-254 169-446 (447)
2 PLN02481 Omega-hydroxypalmitat 100.0 6.7E-49 1.4E-53 369.7 25.8 246 1-253 181-435 (436)
3 PLN02663 hydroxycinnamoyl-CoA: 100.0 1.3E-48 2.8E-53 367.4 25.5 249 1-253 168-430 (431)
4 PLN00140 alcohol acetyltransfe 100.0 7.4E-47 1.6E-51 356.4 22.7 244 1-255 171-433 (444)
5 PF02458 Transferase: Transfer 100.0 4.9E-46 1.1E-50 349.3 14.2 251 1-254 170-432 (432)
6 PRK09294 acyltransferase PapA5 98.4 1.8E-06 3.9E-11 81.0 10.3 138 50-195 206-346 (416)
7 PF07247 AATase: Alcohol acety 97.4 0.0059 1.3E-07 58.4 15.6 107 49-158 248-365 (480)
8 TIGR02946 acyl_WS_DGAT acyltra 93.8 3.6 7.8E-05 38.8 15.8 79 52-137 228-309 (446)
9 COG4908 Uncharacterized protei 93.0 0.72 1.6E-05 42.9 9.1 105 46-157 211-317 (439)
10 TIGR03847 conserved hypothetic 51.7 60 0.0013 26.8 6.3 49 205-257 7-57 (177)
11 PF00668 Condensation: Condens 47.8 63 0.0014 27.6 6.5 72 51-129 221-292 (301)
12 PF07428 Tri3: 15-O-acetyltran 42.5 55 0.0012 30.2 5.1 84 51-135 269-356 (413)
13 PF11290 DUF3090: Protein of u 39.2 99 0.0021 25.5 5.7 39 215-257 17-55 (171)
14 COG2037 Ftr Formylmethanofuran 33.5 1.1E+02 0.0024 26.7 5.4 55 202-259 42-96 (297)
15 PF07153 Marek_SORF3: Marek's 27.4 18 0.00039 32.1 -0.3 32 109-143 197-228 (348)
16 COG1325 Predicted exosome subu 21.6 1.1E+02 0.0023 24.7 3.0 41 120-164 46-86 (149)
17 PF08252 Leader_CPA1: arg-2/CP 21.3 99 0.0022 16.5 1.9 16 75-90 7-22 (24)
No 1
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=100.00 E-value=6.4e-49 Score=370.92 Aligned_cols=250 Identities=24% Similarity=0.387 Sum_probs=209.2
Q ss_pred CcccccCCCCCCCCCCCCCcccCCCCCCC--CCCCCccccccCC-------CCCCCCCceEEEEEeCHhhHHHHHhhCCC
Q 036972 1 MEDMARGERSPTVFPIWQRQILNARNPPQ--VTCIHHEYDEINT-------NEVPSDNMAHKSFFFSLKGIKALRNQLPF 71 (275)
Q Consensus 1 wa~~~Rg~~~~~~~P~~dR~~~~~r~pp~--~~~~~~~~~~~~~-------~~~~~~~~~~~~f~fs~~~i~~Lk~~a~~ 71 (275)
||++|||.. ...+|+|||+++.+++||. ..++|.+|...+. ......++..++|+|++++|++||+++.+
T Consensus 169 WA~~~rg~~-~~~~P~~dR~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~LK~~a~~ 247 (447)
T PLN03157 169 WARIARGEP-LGTVPFLDRKVLRAGEPPLSAPVFDHAEFSHPPLLIGEQDNVEERKKKTTVAMLKLSKDQVEKLKDKANE 247 (447)
T ss_pred HHHHhcCCC-CCCCCccCcccccCCCCCCcCCccChhhcccCcccccccccccccccCceEEEEEECHHHHHHHHHhCcc
Confidence 999999975 4678999999999888874 3456555432110 01113467889999999999999999875
Q ss_pred C-----CCCCchHHHHHHHHHHHHHHhcCCCCCCcEEEEEEEecCCCCCCCCCCCCCcccceeccccccchhhhhcCcHH
Q 036972 72 H-----LKDCSTFELLLAFLWKCRTIALKLQPEEIAKVSCIVNVRGKRYKMDIPPGYYGNAFTFSAVCSTAEQLCKNPIG 146 (275)
Q Consensus 72 ~-----~~~~St~d~l~A~iW~~~~rAr~~~~~~~~~l~~~vd~R~rl~~p~lp~~Y~GN~v~~~~~~~~~~~l~~~~l~ 146 (275)
+ ..++|++|+|+||+|+|++|||+..+++++.+.++||+|+|+ +||+|++|+||++..+.+..+++++.+.+|+
T Consensus 248 ~~~~~~~~~~St~dalsA~lWr~~~rAr~~~~~~~~~l~~~vd~R~rl-~Pplp~~Y~GN~v~~~~~~~~~~el~~~~l~ 326 (447)
T PLN03157 248 SRSSDNGRPYTRYETVAGHVWRSACKARGHEPEQPTALGICVDSRSRM-QPPLPDGYFGNATLDVIAESTSGELVSKPLG 326 (447)
T ss_pred cccccCCCCccHHHHHHHHHHHHHHHHccCCCCCceEEEEEecCCCCC-CCCCCCCcccceeeeccchhhHHHHhhCCHH
Confidence 3 236999999999999999999998888899999999999999 9999999999999999988889999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-cc------cc------CCCCcEEEecCCCCCCCcccccCCccceeeecc
Q 036972 147 YAVELVKKAKAQMNEEYIRSVADLMVIKGR-RI------KS------STRGNFIVSDLRNVGLGDVDFGWGKPIYGGAAG 213 (275)
Q Consensus 147 ~~A~~IR~ai~~~~~e~v~~~~~~~~~~~~-~~------~~------~~~~~~~vssw~~~~~y~~DFG~GkP~~~~~~~ 213 (275)
++|..||+++++++++|++++++|++.... .. .+ ....++.+|||+|+++|++|||||+|.++++..
T Consensus 327 ~~a~~Ir~ai~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vssw~~~~~y~~DFGwGkp~~~~p~~ 406 (447)
T PLN03157 327 YASSKIREAIEKVTNEYVQSAIDYLKNQEDLTRFQDLHALGGAEGPFYGNPNLGVVSWLTLPIYGLDFGWGKEIYMGPGT 406 (447)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhCccchhhhcccccccccccccCCCceEEeecccCCccccccCCCccceecccc
Confidence 999999999999999999999999864221 00 00 023568999999999999999999999998865
Q ss_pred c-cceEEEEEecCCCCCCCcEEEEEecCHHHHHHHHHHHHHH
Q 036972 214 A-VAVFSFCVKYQSKNGEPGILVPICLPQSAMERFQEELKRL 254 (275)
Q Consensus 214 ~-~~~~~~ilp~~~~~G~~g~ev~v~L~~~~m~~l~~d~~~l 254 (275)
. ..|.++++|+++++| |++|.|+|++++|++|++.+.++
T Consensus 407 ~~~~g~~~l~~~~~~~g--~iev~v~L~~~~M~~f~~~~~~~ 446 (447)
T PLN03157 407 HDFDGDSLLLPGQNEDG--SVILALCLQVAHMEAFKKFFYED 446 (447)
T ss_pred cCCCceEEEeecCCCCC--cEEEEEEcCHHHHHHHHHHHHhh
Confidence 3 678888999887666 89999999999999999988765
No 2
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=100.00 E-value=6.7e-49 Score=369.67 Aligned_cols=246 Identities=33% Similarity=0.562 Sum_probs=211.5
Q ss_pred CcccccCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCC----C-CCCCCCceEEEEEeCHhhHHHHHhhCCCCC--
Q 036972 1 MEDMARGERSPTVFPIWQRQILNARNPPQVTCIHHEYDEINT----N-EVPSDNMAHKSFFFSLKGIKALRNQLPFHL-- 73 (275)
Q Consensus 1 wa~~~Rg~~~~~~~P~~dR~~~~~r~pp~~~~~~~~~~~~~~----~-~~~~~~~~~~~f~fs~~~i~~Lk~~a~~~~-- 73 (275)
||++|||.. .+.+|++||+++.+++||...++|.++...+. . .....++.+++|+|++++|++||+++..+.
T Consensus 181 WA~~~rg~~-~~~~p~~dr~~l~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~LK~~a~~~~~~ 259 (436)
T PLN02481 181 WGETARGLP-LSVPPFLDRSILRARNPPKIEFPHQEFAEIEDVSGTSKLYDDEELVYKSFCFDPEKLEKLKSMALEDGVI 259 (436)
T ss_pred HHHHhcCCC-CCCCCCcCcccCCCCCCCCCCcCccccccccCCccccccccccCceEEEEEECHHHHHHHHHhcccccCC
Confidence 999999975 46789999999998898877777766543221 0 112356889999999999999999987542
Q ss_pred CCCchHHHHHHHHHHHHHHhcCCCCCCcEEEEEEEecCCCCCCCCCCCCCcccceeccccccchhhhhcCcHHHHHHHHH
Q 036972 74 KDCSTFELLLAFLWKCRTIALKLQPEEIAKVSCIVNVRGKRYKMDIPPGYYGNAFTFSAVCSTAEQLCKNPIGYAVELVK 153 (275)
Q Consensus 74 ~~~St~d~l~A~iW~~~~rAr~~~~~~~~~l~~~vd~R~rl~~p~lp~~Y~GN~v~~~~~~~~~~~l~~~~l~~~A~~IR 153 (275)
.++|+||+|+||+|+|++||+++.+++.+.+.++||+|+|+ +||+|++|+||+++.+.+.++++++.+.+|+++|..||
T Consensus 260 ~~~S~~dal~A~iW~~~~rA~~~~~~~~~~l~~~vd~R~rl-~Pplp~~Y~GN~v~~~~~~~~~~~l~~~~l~~~A~~Ir 338 (436)
T PLN02481 260 KKCSTFEALTAFVWRARTKALKMLPDQQTKLLFAVDGRSRF-NPPLPKGYFGNGIVLTNALTTAGELLENPLSHAVGLVQ 338 (436)
T ss_pred CCcChHHHHHHHHHHHHHhccCCCCCCeEEEEEEEcCccCC-CCCCCCCceeeeeeeccccccHHHHhhCCHHHHHHHHH
Confidence 46999999999999999999998888899999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHH-hccccccCCCCcEEEecCCCCCCCcccccCCccceeeeccc-cceEEEEEecCCCCCCC
Q 036972 154 KAKAQMNEEYIRSVADLMVI-KGRRIKSSTRGNFIVSDLRNVGLGDVDFGWGKPIYGGAAGA-VAVFSFCVKYQSKNGEP 231 (275)
Q Consensus 154 ~ai~~~~~e~v~~~~~~~~~-~~~~~~~~~~~~~~vssw~~~~~y~~DFG~GkP~~~~~~~~-~~~~~~ilp~~~~~G~~ 231 (275)
+++.+++++|+++.++|++. +..+. ...++.+|||+++++|++|||||+|+++++... .+++++++|...++|
T Consensus 339 ~~i~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~vssw~~~~~y~~DFG~G~P~~~~p~~~~~~~~~~~~~~~~~~~-- 413 (436)
T PLN02481 339 DAIKMVNDGYMRSAIDYFEVTRARPS---LASTLLITTWSRLSFHTTDFGWGEPVLSGPVGLPEKEVILFLSHGKERK-- 413 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCC---CCCcEEEEecCCCCcccccccCCccccccccccCCCceEEEeccCCCCC--
Confidence 99999999999999999874 22222 356899999999999999999999999987764 478888888655444
Q ss_pred cEEEEEecCHHHHHHHHHHHHH
Q 036972 232 GILVPICLPQSAMERFQEELKR 253 (275)
Q Consensus 232 g~ev~v~L~~~~m~~l~~d~~~ 253 (275)
|++|.|+|++++|++|+++++.
T Consensus 414 gi~v~v~L~~~~M~~f~~~~~~ 435 (436)
T PLN02481 414 SINVLLGLPASAMKTFQELMEI 435 (436)
T ss_pred cEEEEEECCHHHHHHHHHHHhh
Confidence 9999999999999999998763
No 3
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=100.00 E-value=1.3e-48 Score=367.37 Aligned_cols=249 Identities=27% Similarity=0.451 Sum_probs=210.8
Q ss_pred CcccccCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCC-----CCCCCCceEEEEEeCHhhHHHHHhhCCCCC--
Q 036972 1 MEDMARGERSPTVFPIWQRQILNARNPPQVTCIHHEYDEINTN-----EVPSDNMAHKSFFFSLKGIKALRNQLPFHL-- 73 (275)
Q Consensus 1 wa~~~Rg~~~~~~~P~~dR~~~~~r~pp~~~~~~~~~~~~~~~-----~~~~~~~~~~~f~fs~~~i~~Lk~~a~~~~-- 73 (275)
||++|||.. ...+|++||+++++++||...++|.++...+.. ....+++..++|+|++++|++||+.+.+..
T Consensus 168 wa~~~rg~~-~~~~p~~dr~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~LK~~~~~~~~~ 246 (431)
T PLN02663 168 WSDMARGLD-LTIPPFIDRTLLRARDPPQPAFHHVEYQPPPSMKTPLETSKPENTTVSIFKLTRDQLNTLKAKSKEDGNT 246 (431)
T ss_pred HHHHhcCCC-CCCCCccCccccCCCCCCCCCcccccccCCCccccccccCCCCCceEEEEEECHHHHHHHHhhCcccCCC
Confidence 999999974 467899999999988888777777655432210 111346789999999999999999987542
Q ss_pred CCCchHHHHHHHHHHHHHHhcCCCCCCcEEEEEEEecCCCCCCCCCCCCCcccceeccccccchhhhhcCcHHHHHHHHH
Q 036972 74 KDCSTFELLLAFLWKCRTIALKLQPEEIAKVSCIVNVRGKRYKMDIPPGYYGNAFTFSAVCSTAEQLCKNPIGYAVELVK 153 (275)
Q Consensus 74 ~~~St~d~l~A~iW~~~~rAr~~~~~~~~~l~~~vd~R~rl~~p~lp~~Y~GN~v~~~~~~~~~~~l~~~~l~~~A~~IR 153 (275)
.++|++|+|+||+|+|++||++.++++++.+.++||+|+|+ +|++|++|+||++..+.+..+++++.+.+|..+|..||
T Consensus 247 ~~~S~~dalsA~lW~~~~rA~~~~~~~~~~~~~~vd~R~rl-~p~lp~~Y~GN~~~~~~~~~~~~el~~~~l~~~a~~ir 325 (431)
T PLN02663 247 ISYSSYEMLAGHVWRSACKARGLPDDQETKLYIATDGRSRL-RPQLPPGYFGNVIFTATPIAVAGELQSKPTWYAAGKIH 325 (431)
T ss_pred cccchHHHHHHHHHhhhhhcccCCCccceEEEEEecCCcCC-CCCCCCCcccceEEecccccchhhhhhCCHHHHHHHHH
Confidence 46899999999999999999998888999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhcc-ccc--c---CCCCcEEEecCCCCCCCcccccCCccceeeecc-ccceEEEEEecCC
Q 036972 154 KAKAQMNEEYIRSVADLMVIKGR-RIK--S---STRGNFIVSDLRNVGLGDVDFGWGKPIYGGAAG-AVAVFSFCVKYQS 226 (275)
Q Consensus 154 ~ai~~~~~e~v~~~~~~~~~~~~-~~~--~---~~~~~~~vssw~~~~~y~~DFG~GkP~~~~~~~-~~~~~~~ilp~~~ 226 (275)
+++++++++|++++++|++...+ ..+ . ....++.+|||+++++|++|||||||+++++.. ...|+++++|+++
T Consensus 326 ~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vssw~~~~~y~~DFGwGkP~~v~~~~~~~~g~~~~~p~~~ 405 (431)
T PLN02663 326 DALVRMDDDYLRSALDYLELQPDLSALVRGAHTFRCPNLGITSWVRLPIYDADFGWGRPIFMGPGGIAYEGLSFILPSPT 405 (431)
T ss_pred HHHHHhCHHHHHHHHHHHHhCcccchhhcccCcCcCCcEEecccCCCCccccccCCCcccccccccccCCCeEEEeccCC
Confidence 99999999999999999874221 111 0 124579999999999999999999999998865 3568888999876
Q ss_pred CCCCCcEEEEEecCHHHHHHHHHHHHH
Q 036972 227 KNGEPGILVPICLPQSAMERFQEELKR 253 (275)
Q Consensus 227 ~~G~~g~ev~v~L~~~~m~~l~~d~~~ 253 (275)
++| |++|.|+|++++|++|++.+..
T Consensus 406 ~~g--~iev~v~L~~~~m~~f~~~~~~ 430 (431)
T PLN02663 406 NDG--SLSVAISLQSEHMKLFEKFLYE 430 (431)
T ss_pred CCC--cEEEEEECCHHHHHHHHHHHhh
Confidence 665 8999999999999999988654
No 4
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=100.00 E-value=7.4e-47 Score=356.40 Aligned_cols=244 Identities=27% Similarity=0.346 Sum_probs=190.6
Q ss_pred CcccccCCCCCCCCCCCCCc--ccCCCCCCCCCCCCccccccCCCCCCCCCceEEEEEeCHhhHHHHHhhCCCCC-CCCc
Q 036972 1 MEDMARGERSPTVFPIWQRQ--ILNARNPPQVTCIHHEYDEINTNEVPSDNMAHKSFFFSLKGIKALRNQLPFHL-KDCS 77 (275)
Q Consensus 1 wa~~~Rg~~~~~~~P~~dR~--~~~~r~pp~~~~~~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~Lk~~a~~~~-~~~S 77 (275)
||++|||...+...|+|||. ++++++++.. .++.+.. .......++..++|+|++++|++||+.+.+.. .++|
T Consensus 171 WA~~~rg~~~~~~~P~~dr~~~~~p~~~~~~~--~~~~~~~--~~~~~~~~~v~~~f~fs~~~I~~LK~~~~~~~~~~~S 246 (444)
T PLN00140 171 WAANTRGHYSEVINPDLFEASSFFPPLNSFPV--QFLLLME--ENWFFKENYITKRFVFDAKAIATLRAKAKSKRVPNPS 246 (444)
T ss_pred HHHHhcCCCCCCCCcccccccccCCCCCcccc--ccccccc--ccccccCceEEEEEEECHHHHHHHHHhcccccCCCCc
Confidence 99999997655678999996 3333322211 1111111 01112346889999999999999999987643 4799
Q ss_pred hHHHHHHHHHHHHHHhcCC-C-CCCcEEEEEEEecCCCCCCCCCCCCCcccceeccccccchhhhhcCcHHHHHHHHHHH
Q 036972 78 TFELLLAFLWKCRTIALKL-Q-PEEIAKVSCIVNVRGKRYKMDIPPGYYGNAFTFSAVCSTAEQLCKNPIGYAVELVKKA 155 (275)
Q Consensus 78 t~d~l~A~iW~~~~rAr~~-~-~~~~~~l~~~vd~R~rl~~p~lp~~Y~GN~v~~~~~~~~~~~l~~~~l~~~A~~IR~a 155 (275)
+||+|+||+|+|++||++. . .++.+.+.++||+|+|+ +||||++||||++..+.+.++++++ ..+|.++|..||++
T Consensus 247 ~~e~vsA~iWr~~~rA~~~~~~~~~~~~~~~~vn~R~Rl-~PpLP~~y~GN~i~~~~~~~~~~~~-~~~l~~~a~~Ir~~ 324 (444)
T PLN00140 247 RIETLSCFIWKCCTAASRSISAAPRPSISVHAVNIRQRT-KPPMSRYSIGNLFWWALAAADPADT-KIELNELVSLTRES 324 (444)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCCceEEEEEEeccccC-CCCCCcccccchhhhheeccccccc-ccchHHHHHHHHHH
Confidence 9999999999999999653 2 35789999999999999 9999999999999999988888886 58899999999999
Q ss_pred HHhCCHHHHHHHHHHH---------HH-hccccccCCCCcEEEecCCCCCCCcccccCCccceeeecc----ccceEEEE
Q 036972 156 KAQMNEEYIRSVADLM---------VI-KGRRIKSSTRGNFIVSDLRNVGLGDVDFGWGKPIYGGAAG----AVAVFSFC 221 (275)
Q Consensus 156 i~~~~~e~v~~~~~~~---------~~-~~~~~~~~~~~~~~vssw~~~~~y~~DFG~GkP~~~~~~~----~~~~~~~i 221 (275)
+.+++++|+++++++. .. ++ ........+.+|||+||++|++|||||||+++++.. ...+++++
T Consensus 325 i~~~~~e~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vssw~r~~~ye~DFGwGkP~~v~~~~~~~~~~~~~~~l 402 (444)
T PLN00140 325 IANYNSDYLKSLQGENGLEGMSEYLNQLVG--IFSEEPEIFLFSSWLNFGLNDVDFGWGKPIWVGLLGEVGPAFRNLTVF 402 (444)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHhh--cccCCCceEEecccccCCccccccCCCCceeeecccccCCcccceEEE
Confidence 9999999999987542 11 11 111122345899999999999999999999998873 25688888
Q ss_pred EecCCCCCCCcEEEEEecCHHHHHHHHHHHHHHH
Q 036972 222 VKYQSKNGEPGILVPICLPQSAMERFQEELKRLM 255 (275)
Q Consensus 222 lp~~~~~G~~g~ev~v~L~~~~m~~l~~d~~~l~ 255 (275)
+|++++ | |++|.|+|++++|++|++|.+++.
T Consensus 403 ~~~~~~-~--giev~v~L~~~~M~~f~~d~e~l~ 433 (444)
T PLN00140 403 KETGDN-N--GIEAWITLDEKIMAILERDPEFLA 433 (444)
T ss_pred EecCCC-C--eEEEEEecCHHHHHHHhhCHHHHh
Confidence 887633 4 899999999999999999987664
No 5
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=100.00 E-value=4.9e-46 Score=349.26 Aligned_cols=251 Identities=31% Similarity=0.547 Sum_probs=193.3
Q ss_pred CcccccCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCC-CCCCCCCceEEEEEeC---HhhHHHHHhhCCCCC-C-
Q 036972 1 MEDMARGERSPTVFPIWQRQILNARNPPQVTCIHHEYDEINT-NEVPSDNMAHKSFFFS---LKGIKALRNQLPFHL-K- 74 (275)
Q Consensus 1 wa~~~Rg~~~~~~~P~~dR~~~~~r~pp~~~~~~~~~~~~~~-~~~~~~~~~~~~f~fs---~~~i~~Lk~~a~~~~-~- 74 (275)
||++|||...+..+|++||..+.+++||.+.+.|.++...+. ......++..+.|.|+ .++|++||+++.+.. .
T Consensus 170 wa~~~rg~~~~~~~p~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~lk~~~~~~~~~~ 249 (432)
T PF02458_consen 170 WAEICRGGSPPSPPPVFDRSLLLPPNPPSVSFPPSEFEPFPPEPAPPSSKCVSKTFVFSKLSIEKLKKLKSEALSSSSGK 249 (432)
T ss_dssp HHHHHHTTCHHHHHHCHSSTTSS-STTHHHGCTCSCHTTC--TTS---SSEEEEEEEEEHHHHHHHHHHHHHHSTTTSTT
T ss_pred HHhhhcCCcccccccccchHHhhhccCccccccccccccccccccccccccccceeeecccHHHHHHHHhhccccccCCC
Confidence 899999985456689999998887766666666665433221 1223456788899998 888888888876543 2
Q ss_pred CCchHHHHHHHHHHHHHHhcCCCCCCcEEEEEEEecCCCCCCCCCCCCCcccceeccccccchhhhhcCcHHHHHHHHHH
Q 036972 75 DCSTFELLLAFLWKCRTIALKLQPEEIAKVSCIVNVRGKRYKMDIPPGYYGNAFTFSAVCSTAEQLCKNPIGYAVELVKK 154 (275)
Q Consensus 75 ~~St~d~l~A~iW~~~~rAr~~~~~~~~~l~~~vd~R~rl~~p~lp~~Y~GN~v~~~~~~~~~~~l~~~~l~~~A~~IR~ 154 (275)
..|++|+|+||+|+|++|||..++++.+.+.++||+|+|+ +|++|++||||++..+.+..+++|+.+.+|+.+|..||+
T Consensus 250 ~~St~d~l~A~lWr~~~rar~~~~~~~~~l~~~vd~R~rl-~pplp~~Y~GN~~~~~~~~~~~~el~~~~l~~~a~~ir~ 328 (432)
T PF02458_consen 250 PVSTFDALTALLWRCITRARGLPSDETSRLSFAVDCRKRL-NPPLPEGYFGNAVFFAFASATAGELLSEPLSDIARLIRE 328 (432)
T ss_dssp -S-HHHHHHHHHHHHHHHHHCHTTTTCEEEEEEEETHHHS-SS---TTB-S--EEEEEEEEEHHHHHHSHHHHHHHHHHH
T ss_pred CCCeeEEEEEehhhhhccccccccccccccccccccCCCc-CCCcceeecCceEeecccccchhhhhhhhhhHHHHhhhh
Confidence 2499999999999999999998888889999999999999 899999999999999999999999999999999999999
Q ss_pred HHHh-CCHHHHHHHHHHHHHhc----cccccCCCCcEEEecCCCCCCCcccccCCccceeeeccc-cceEEEEEecCCCC
Q 036972 155 AKAQ-MNEEYIRSVADLMVIKG----RRIKSSTRGNFIVSDLRNVGLGDVDFGWGKPIYGGAAGA-VAVFSFCVKYQSKN 228 (275)
Q Consensus 155 ai~~-~~~e~v~~~~~~~~~~~----~~~~~~~~~~~~vssw~~~~~y~~DFG~GkP~~~~~~~~-~~~~~~ilp~~~~~ 228 (275)
++.+ ++++++++.++|++... .+.....+.++.+|||+++++|++|||||+|.++++... ..+.++++|.++++
T Consensus 329 ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ssw~~~~~y~~DFG~G~P~~~~~~~~~~~~~~~~~p~~~~~ 408 (432)
T PF02458_consen 329 AIAKMVTEEYVRSAIDWVESQSSRKLIPSFFPGGPDVVVSSWRRFPFYEVDFGWGKPVAVRPPSPPRGGGVFLLPSRGGD 408 (432)
T ss_dssp HHCHHHHHHHHHHHHHHHHC-CCCHTCCTSTCG-CEEEEEEETTSSGGG--TSSSS-SEEEECGCCSTTEEEEEE-SSTT
T ss_pred hhhccchHHHhhhhhccccccccccccccccCcCCceeccccccCCCcccccCCCCceEEEcccccCCCEEEEEccCCCc
Confidence 9998 99999999999997421 112221227899999999999999999999999998873 45555888988555
Q ss_pred CCCcEEEEEecCHHHHHHHHHHHHHH
Q 036972 229 GEPGILVPICLPQSAMERFQEELKRL 254 (275)
Q Consensus 229 G~~g~ev~v~L~~~~m~~l~~d~~~l 254 (275)
| |++|.|+|++++|++|++|+++|
T Consensus 409 g--gvev~v~L~~~~M~~f~~d~e~~ 432 (432)
T PF02458_consen 409 G--GVEVWVCLPEEAMERFEKDFEFL 432 (432)
T ss_dssp S--SEEEEEEEEHHHHHHHHHHHH--
T ss_pred C--cEEEEEECCHHHHhChhhcccCC
Confidence 5 99999999999999999999986
No 6
>PRK09294 acyltransferase PapA5; Provisional
Probab=98.40 E-value=1.8e-06 Score=81.02 Aligned_cols=138 Identities=9% Similarity=-0.029 Sum_probs=101.2
Q ss_pred ceEEEEEeCHhhHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcCCCCCCcEEEEEEEecCCCCCCCCCCCCCccccee
Q 036972 50 MAHKSFFFSLKGIKALRNQLPFHLKDCSTFELLLAFLWKCRTIALKLQPEEIAKVSCIVNVRGKRYKMDIPPGYYGNAFT 129 (275)
Q Consensus 50 ~~~~~f~fs~~~i~~Lk~~a~~~~~~~St~d~l~A~iW~~~~rAr~~~~~~~~~l~~~vd~R~rl~~p~lp~~Y~GN~v~ 129 (275)
.....+.|+++..++|++.|.+. .+|.+++|.|.+|.++.+..+.+ +....+.++||.|+++ .|+++..+++|++.
T Consensus 206 ~~~~~~~l~~~~~~~L~~~a~~~--~~t~~~~l~Aa~~~~l~r~~~~~-~~~i~~~~pv~~R~~l-~p~~~~~~~~n~~g 281 (416)
T PRK09294 206 VPVTRCRLSKAQTSSLAAFGRRH--RLTVNALVSAAILLAEWQLRRTP-HVPLPYVYPVDLRFRL-TPPVAATEGTNLLG 281 (416)
T ss_pred CceeEEEeCHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHhcCCC-CCceeeecchhhHhhc-CCCCCcccceeeEe
Confidence 34667899999999999988753 48999999999999999887643 5566788999999999 89998889999987
Q ss_pred ccccccchhhhhcCcHHHHHHHHHHHHHh-CCHHHHH-HHHHH-HHHhccccccCCCCcEEEecCCCCC
Q 036972 130 FSAVCSTAEQLCKNPIGYAVELVKKAKAQ-MNEEYIR-SVADL-MVIKGRRIKSSTRGNFIVSDLRNVG 195 (275)
Q Consensus 130 ~~~~~~~~~~l~~~~l~~~A~~IR~ai~~-~~~e~v~-~~~~~-~~~~~~~~~~~~~~~~~vssw~~~~ 195 (275)
......... .+.++.++|..|++.+.+ ++.+++. ++..+ ....+.+.. ....+.+|||.+++
T Consensus 282 ~~~~~~~~~--~~~sf~ela~~v~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~--~~~~v~~Snlg~~~ 346 (416)
T PRK09294 282 AATYLAEIG--PDTDIVDLARAIAATLRADLADGVIQQSFLHFGTAFEGTPPG--LPPVVFITNLGVAP 346 (416)
T ss_pred eeeeecccc--CCCCHHHHHHHHHHHHhhhhhcceeeehhhcccccccCCCCC--CCCeEEEecCCcCC
Confidence 765444332 235899999999999985 6666632 33333 111122211 23468899999994
No 7
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=97.43 E-value=0.0059 Score=58.38 Aligned_cols=107 Identities=17% Similarity=0.039 Sum_probs=72.1
Q ss_pred CceEEEEEeCHhhHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcC---CCCCCcEEEEEEEecCCCCCCCCCC---CC
Q 036972 49 NMAHKSFFFSLKGIKALRNQLPFHLKDCSTFELLLAFLWKCRTIALK---LQPEEIAKVSCIVNVRGKRYKMDIP---PG 122 (275)
Q Consensus 49 ~~~~~~f~fs~~~i~~Lk~~a~~~~~~~St~d~l~A~iW~~~~rAr~---~~~~~~~~l~~~vd~R~rl~~p~lp---~~ 122 (275)
....+.+.|+++++++|++.|.++. +|-.-.|.|++-.++.+... ..........+++|+|+.+ ..... ..
T Consensus 248 ~t~~~~~~i~~~~~~~ll~~CR~~~--~TlT~~L~al~~~al~~~~~~~~~~~~~~~~~~~pvnlR~~~-p~~~~~~~~~ 324 (480)
T PF07247_consen 248 KTRYRSLSISPEELKKLLKACRKHG--TTLTALLHALIALALSKVQLPKPKSEKSSFKISTPVNLRRFL-PEDSELRDEY 324 (480)
T ss_pred cceEEEEEECHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhhhcccccccCceEEEEeeeeCCCCC-Cccccccccc
Confidence 3457899999999999999998654 45555677777777776421 1223457888999999999 54444 35
Q ss_pred Ccccceeccccccchh--hh---hcCcHHHHHHHHHHHHHh
Q 036972 123 YYGNAFTFSAVCSTAE--QL---CKNPIGYAVELVKKAKAQ 158 (275)
Q Consensus 123 Y~GN~v~~~~~~~~~~--~l---~~~~l~~~A~~IR~ai~~ 158 (275)
-+|+.+.......... +. ....+.++|..+++.+.+
T Consensus 325 ~~g~~v~~~~~~~~~~~~~~~~~~~~~fW~~a~~~~~~i~~ 365 (480)
T PF07247_consen 325 SYGNFVGGIDFSYSISPVSASRGSSENFWELARQIQKEIKE 365 (480)
T ss_pred cceeEEEccceeeecccccccccchHHHHHHHHHHHHHHHH
Confidence 6788776532211111 11 124688999999998876
No 8
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=93.83 E-value=3.6 Score=38.77 Aligned_cols=79 Identities=11% Similarity=-0.003 Sum_probs=52.7
Q ss_pred EEEEEeCHhhHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHh---cCCCCCCcEEEEEEEecCCCCCCCCCCCCCcccce
Q 036972 52 HKSFFFSLKGIKALRNQLPFHLKDCSTFELLLAFLWKCRTIA---LKLQPEEIAKVSCIVNVRGKRYKMDIPPGYYGNAF 128 (275)
Q Consensus 52 ~~~f~fs~~~i~~Lk~~a~~~~~~~St~d~l~A~iW~~~~rA---r~~~~~~~~~l~~~vd~R~rl~~p~lp~~Y~GN~v 128 (275)
.+.|.+....++.||+.+.. ..+|-+|++.|.+-..+.+- ++..+.....+.++||+|... +..-.||.+
T Consensus 228 ~r~~~~~~~~~~~l~~~a~~--~g~T~ndvllaa~~~al~~~~~~~~~~~~~~i~~~~pv~~R~~~-----~~~~~~N~~ 300 (446)
T TIGR02946 228 KRRFAAQSLPLADVKAVAKA--FGVTINDVVLAAVAGALRRYLEERGELPDDPLVAMVPVSLRPME-----DDSEGGNQV 300 (446)
T ss_pred cceEEeeccCHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeeeccccc-----cCCCCCCEE
Confidence 45677777777777766543 24799999999887777653 333345568999999999865 234566766
Q ss_pred eccccccch
Q 036972 129 TFSAVCSTA 137 (275)
Q Consensus 129 ~~~~~~~~~ 137 (275)
.......+.
T Consensus 301 ~~~~~~l~~ 309 (446)
T TIGR02946 301 SAVLVPLPT 309 (446)
T ss_pred EEEEecCCC
Confidence 555555443
No 9
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=93.05 E-value=0.72 Score=42.89 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=74.0
Q ss_pred CCCCceEEEEEeCHhhHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhc--CCCCCCcEEEEEEEecCCCCCCCCCCCCC
Q 036972 46 PSDNMAHKSFFFSLKGIKALRNQLPFHLKDCSTFELLLAFLWKCRTIAL--KLQPEEIAKVSCIVNVRGKRYKMDIPPGY 123 (275)
Q Consensus 46 ~~~~~~~~~f~fs~~~i~~Lk~~a~~~~~~~St~d~l~A~iW~~~~rAr--~~~~~~~~~l~~~vd~R~rl~~p~lp~~Y 123 (275)
..+.+.-..+.++.+.++++|.-+..+ ..|.+|++.|.+-+-...=. .-+........++||+|+-+ +--+..
T Consensus 211 d~~~m~~~~~~I~~~ef~~ikay~k~~--gaTiNDiilaa~~~fr~~y~~~~~k~~~~lsi~~~VDlRkyl---~sk~~s 285 (439)
T COG4908 211 DGPNMSFEKTTIPSDEFKKIKAYAKVH--GATINDIILAALLKFRLLYNTTHEKANNYLSIDMPVDLRKYL---PSKEES 285 (439)
T ss_pred CCCcceEEEEecCHHHHHHHHHhhhhc--CCcHHHHHHHHHHHHHHHHhhhchhhcCeeeeceeeehhhhc---cccccc
Confidence 345677788999999999999988643 37999998887633222211 11234578899999999999 333378
Q ss_pred cccceeccccccchhhhhcCcHHHHHHHHHHHHH
Q 036972 124 YGNAFTFSAVCSTAEQLCKNPIGYAVELVKKAKA 157 (275)
Q Consensus 124 ~GN~v~~~~~~~~~~~l~~~~l~~~A~~IR~ai~ 157 (275)
+||.........+..|+ .++..+...+....+
T Consensus 286 I~Nls~~~~i~I~~dd~--~~fe~t~~~vk~~~~ 317 (439)
T COG4908 286 ISNLSSYLTIVINVDDV--TDFEKTLEKVKGIMN 317 (439)
T ss_pred eeccceeEEEEEecccc--ccHHHHHHHHHhhcC
Confidence 99988877777777665 356666666666555
No 10
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=51.67 E-value=60 Score=26.75 Aligned_cols=49 Identities=18% Similarity=0.347 Sum_probs=34.8
Q ss_pred cccee--eeccccceEEEEEecCCCCCCCcEEEEEecCHHHHHHHHHHHHHHHhc
Q 036972 205 KPIYG--GAAGAVAVFSFCVKYQSKNGEPGILVPICLPQSAMERFQEELKRLMIQ 257 (275)
Q Consensus 205 kP~~~--~~~~~~~~~~~ilp~~~~~G~~g~ev~v~L~~~~m~~l~~d~~~l~~~ 257 (275)
.|..+ +.+...+.-+|++..+. | +..|.|.|+++++..|.+-++.|+.+
T Consensus 7 ~pdRfvaGTVG~PG~RtFyLQa~~--g--~rlvSv~lEK~Qv~aLAe~i~~LLde 57 (177)
T TIGR03847 7 PPDRFVAGTVGPPGARTFYLQARE--G--SRVVSVALEKQQVAALAERIDELLDE 57 (177)
T ss_pred CCCeEEeeccCCCCceEEEEEecc--C--CcEEEEEehHHHHHHHHHHHHHHHHH
Confidence 45443 33333445567777543 3 89999999999999999888888773
No 11
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=47.84 E-value=63 Score=27.61 Aligned_cols=72 Identities=17% Similarity=0.087 Sum_probs=43.9
Q ss_pred eEEEEEeCHhhHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcCCCCCCcEEEEEEEecCCCCCCCCCCCCCccccee
Q 036972 51 AHKSFFFSLKGIKALRNQLPFHLKDCSTFELLLAFLWKCRTIALKLQPEEIAKVSCIVNVRGKRYKMDIPPGYYGNAFT 129 (275)
Q Consensus 51 ~~~~f~fs~~~i~~Lk~~a~~~~~~~St~d~l~A~iW~~~~rAr~~~~~~~~~l~~~vd~R~rl~~p~lp~~Y~GN~v~ 129 (275)
....+.++.+..+.|++.+.. ..+|.++++.|.+-..+.+-.+ .....+.++++.|.+- .+.. .+-+|+++-
T Consensus 221 ~~~~~~l~~~~~~~l~~~a~~--~~~t~~~~l~aa~~~~l~~~~~---~~~~~i~~~~~~R~~~-~~~~-~~~vG~~~~ 292 (301)
T PF00668_consen 221 SRISFSLSSELSKRLKEFAKQ--YGVTPFAVLLAAFALALSRLTG---QDDVVIGTPVSGRPRS-GPGF-SNTVGPFVN 292 (301)
T ss_dssp EEEEEE--HHHHHHHHHHHHH--TTS-HHHHHHHHHHHHHHHHHT---TSEEEEEEEE---TTT-SCGG-GGS-SS--E
T ss_pred ccccccccchhhhhhhhhhhh--hcccchhhhhhhhhhhhhhccc---cceeeecccccCCCCC-CcCh-hhCeeeEeE
Confidence 367889999999999887754 2478999888877666665533 4678999999999983 2232 345666543
No 12
>PF07428 Tri3: 15-O-acetyltransferase Tri3; InterPro: IPR009992 This family represents a conserved region approximately 400 residues long within 15-O-acetyltransferase (Tri3), which seems to be restricted to ascomycete fungi. In Fusarium sporotrichioides, this is required for acetylation of the C-15 hydroxyl group of trichothecenes in the biosynthesis of T-2 toxin [].; PDB: 3FP0_A 3FOT_A.
Probab=42.52 E-value=55 Score=30.23 Aligned_cols=84 Identities=19% Similarity=0.040 Sum_probs=42.8
Q ss_pred eEEEEEeCHhhHHHHHhhCCCC-CCCCchHHHHHHHHHHHHHHhcC---CCCCCcEEEEEEEecCCCCCCCCCCCCCccc
Q 036972 51 AHKSFFFSLKGIKALRNQLPFH-LKDCSTFELLLAFLWKCRTIALK---LQPEEIAKVSCIVNVRGKRYKMDIPPGYYGN 126 (275)
Q Consensus 51 ~~~~f~fs~~~i~~Lk~~a~~~-~~~~St~d~l~A~iW~~~~rAr~---~~~~~~~~l~~~vd~R~rl~~p~lp~~Y~GN 126 (275)
..-...||.++=..|++.+... .+..|..-...|-+--++.+-.. .+.++..-.-..||+|++| .+.+..+|++-
T Consensus 269 r~~i~~fs~~eS~Ai~k~vKt~~gP~~TisHL~qAAvllALL~~~~P~d~~D~~~~isp~~v~GRR~L-r~~~a~~~Y~~ 347 (413)
T PF07428_consen 269 RCIIHSFSAEESIAIKKAVKTRLGPKYTISHLGQAAVLLALLRDLKPTDLPDSQAFISPMPVNGRRWL-RPKIAKNYYAI 347 (413)
T ss_dssp EEEEEE--HHHHHHHHHHHHHHT-TT--HHHHHHHHHHHHHHHH-------TT--EEEEEEEE-GGGB--HHHHTS--S-
T ss_pred ceecccCChhhhHHHHHHHhcccCCCcCHHHHHHHHHHHHHHhccCCCCCCCcceEecccccCcchhc-ccchhhhhhhh
Confidence 3455678888877777766432 23455555444444333333322 2233345667889999999 88888899999
Q ss_pred ceecccccc
Q 036972 127 AFTFSAVCS 135 (275)
Q Consensus 127 ~v~~~~~~~ 135 (275)
|...+.+..
T Consensus 348 cqt~a~V~~ 356 (413)
T PF07428_consen 348 CQTAAVVRF 356 (413)
T ss_dssp -EEEEEEEE
T ss_pred hhccceEEE
Confidence 887776643
No 13
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=39.20 E-value=99 Score=25.46 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=30.7
Q ss_pred cceEEEEEecCCCCCCCcEEEEEecCHHHHHHHHHHHHHHHhc
Q 036972 215 VAVFSFCVKYQSKNGEPGILVPICLPQSAMERFQEELKRLMIQ 257 (275)
Q Consensus 215 ~~~~~~ilp~~~~~G~~g~ev~v~L~~~~m~~l~~d~~~l~~~ 257 (275)
.+.-+|++..+. | +..|.|.|+++++..|.+-++.++.+
T Consensus 17 PG~RtFyLQa~~--g--~r~vSV~lEK~Qv~~LAe~i~~lLde 55 (171)
T PF11290_consen 17 PGQRTFYLQARS--G--GRVVSVALEKQQVAALAERIDELLDE 55 (171)
T ss_pred CCceEEEEEEee--C--CcEEEEEEeHHHHHHHHHHHHHHHHH
Confidence 444567777653 3 78999999999999999888888763
No 14
>COG2037 Ftr Formylmethanofuran:tetrahydromethanopterin formyltransferase [Energy production and conversion]
Probab=33.46 E-value=1.1e+02 Score=26.70 Aligned_cols=55 Identities=25% Similarity=0.537 Sum_probs=34.8
Q ss_pred cCCccceeeeccccceEEEEEecCCCCCCCcEEEEEecCHHHHHHHHHHHHHHHhcCC
Q 036972 202 GWGKPIYGGAAGAVAVFSFCVKYQSKNGEPGILVPICLPQSAMERFQEELKRLMIQGS 259 (275)
Q Consensus 202 G~GkP~~~~~~~~~~~~~~ilp~~~~~G~~g~ev~v~L~~~~m~~l~~d~~~l~~~~~ 259 (275)
|+|.-+..+|... +--+++-|....+|+.|+.+.+|.+..+ .|+.++..-++|+-
T Consensus 42 g~~~sVi~cpaEa-Gie~~~~peeTPDGRpG~~iqi~~~~~~--~le~ell~RigQ~v 96 (297)
T COG2037 42 GFGTSVIGCPAEA-GIEKYLPPEETPDGRPGAIIQICHPKKD--KLEHELLERIGQCV 96 (297)
T ss_pred cCCceeEeeeccc-cceeecCcccCCCCCCceEEEEEecchH--HHHHHHHHHhcCce
Confidence 3445555555431 1113444555567788999999999888 77777666666764
No 15
>PF07153 Marek_SORF3: Marek's disease-like virus SORF3 protein; InterPro: IPR009823 This family consists of several SORF3 proteins from the Marek's disease-like viruses (Meleagrid herpesvirus 1 (MeHV-1) also known as Gallid herpesvirus 2. Members of this family are around 350 residues in length. The function of this family is unknown.
Probab=27.35 E-value=18 Score=32.08 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=23.3
Q ss_pred ecCCCCCCCCCCCCCcccceeccccccchhhhhcC
Q 036972 109 NVRGKRYKMDIPPGYYGNAFTFSAVCSTAEQLCKN 143 (275)
Q Consensus 109 d~R~rl~~p~lp~~Y~GN~v~~~~~~~~~~~l~~~ 143 (275)
|.|. .|.||++++||++-.+++.+-.--|...
T Consensus 197 eyrt---P~gLPdd~igNAIr~ccA~Mq~~rl~~~ 228 (348)
T PF07153_consen 197 EYRT---PPGLPDDSIGNAIRLCCAQMQANRLTDP 228 (348)
T ss_pred cccC---CCCCCcchhhhHHHHHHHHHHHhhccCC
Confidence 5554 5699999999999888887655444443
No 16
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=21.58 E-value=1.1e+02 Score=24.67 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=26.2
Q ss_pred CCCCcccceeccccccchhhhhcCcHHHHHHHHHHHHHhCCHHHH
Q 036972 120 PPGYYGNAFTFSAVCSTAEQLCKNPIGYAVELVKKAKAQMNEEYI 164 (275)
Q Consensus 120 p~~Y~GN~v~~~~~~~~~~~l~~~~l~~~A~~IR~ai~~~~~e~v 164 (275)
-+||+||-+....+...-+ ....++...||+.+.+-+.+++
T Consensus 46 aeGhyGNpI~il~~~l~~~----~~~~~flk~i~e~l~~ed~~~l 86 (149)
T COG1325 46 AEGHYGNPITILEVRLERS----REARKFLKKLRELLGEEDREYL 86 (149)
T ss_pred eecccCCeEEEEEEEecCc----HHHHHHHHHHHHhcChHHHHHH
Confidence 4799999998877765432 3456666677766654344444
No 17
>PF08252 Leader_CPA1: arg-2/CPA1 leader peptide ; InterPro: IPR013203 In this family there are leaders peptides involved in the regulation of the glutaminase subunit (small subunit) of arginine-specific carbamoyl phosphate synthetase. In Neurospora crassa it is a small upstream ORF of 24 codons above the arg-2 locus []. In yeast it is the leader peptide of the CPA1 gene. The 5' region of CPA1 mRNA contains a 25 codon upstream open reading frame. The leader peptide, the product of the upstream open reading frame, plays an essential, negative role in the specific repression of CPA1 by arginine [].; PDB: 2XL1_A.
Probab=21.26 E-value=99 Score=16.51 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=10.6
Q ss_pred CCchHHHHHHHHHHHH
Q 036972 75 DCSTFELLLAFLWKCR 90 (275)
Q Consensus 75 ~~St~d~l~A~iW~~~ 90 (275)
..+..|-++-|||++-
T Consensus 7 ~~t~qDYiSDhiWk~~ 22 (24)
T PF08252_consen 7 VFTSQDYISDHIWKAS 22 (24)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhh
Confidence 3577888999999974
Done!