BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036974
(522 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FMV0|FBL91_ARATH F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana
GN=At5g63520 PE=2 SV=1
Length = 529
Score = 311 bits (796), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 208/530 (39%), Positives = 295/530 (55%), Gaps = 55/530 (10%)
Query: 7 ALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEV 66
A NEDLL +IL RLPA SFA A+CVN+ W+ VCN+ILS+PK+ SA S +P A EV
Sbjct: 34 AAMNEDLLHNILLRLPAKSFAFASCVNRFWSSVCNRILSRPKMISAFSRNPDQLRAGEEV 93
Query: 67 LDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVITNAVTGIIGLDAHLDEIC 126
LDKVLSEPIRP F IA++ + T LIT R+GSR P+I + VTGI+G +A D+
Sbjct: 94 LDKVLSEPIRPQFVIANITC-GNMEETLTLITERVGSRVPIIVSVVTGILGKEACNDKAG 152
Query: 127 EVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHY 186
EV+ D+ L D + + I+L +GY+PG+KV+ IP++++K E M DKF+MDIR+Y
Sbjct: 153 EVRLHSTSDDELFDVAN-FAILLTIGYLPGMKVDIIPVIQAKGESGAEMEDKFVMDIRNY 211
Query: 187 SASISG-CSSPNGIILFGDQNIDIKPILAEMDYGLPEETVIVGDATSCFLFKTGENSQNY 245
+ +SG ++P +ILF + +P+L ++DY +P ETVIVG FL K G +N
Sbjct: 212 MSMVSGHAAAPACLILFAEDTHATEPVLHKLDYAMPAETVIVGGQIGEFLHKRGNEPRNV 271
Query: 246 NGALYFFDAVA-LVFSRDSDN-SNVPEIQFDITMSTGVLPFGPELKAVSVKEH---NADC 300
+A L+F+RD + IQFD +S G+ KA +V +
Sbjct: 272 QLQKDDIRVLAGLIFARDRHRPAQAERIQFDTAISNGMSSVDLRYKAANVNVSLGPSCPS 331
Query: 301 SLLTARMEGYDGLLHGEEILEDIKEHIDDKYPY---LYIGVIHQRG-SLQFGSR----SY 352
+LLTA+ G +L G++IL+DI ++I + Y + Y+GVI +R S+ + S
Sbjct: 332 TLLTAKRRGEAEVLDGDQILDDI-DNILENYIWENDSYLGVIKRRKYSIGLEEKPKIMSS 390
Query: 353 MSLYEVLGAEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCCGTI 412
+ ++V G++DQ +V+G GIK GD F Y D A ++ DV LR L
Sbjct: 391 LVFHQVNGSDDQDLLVDGAGIKTGDQFQVYLPDLKVAEAALNDVSAQLRNLK-------- 442
Query: 413 GRNVTNANK-EVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYF-----ESYPFCRNFPE 466
+ NK EV GG F R D +F +S PF NFPE
Sbjct: 443 ----SKPNKPEVVGGFAFVGSCRG----------------DSFFGCPNADSSPFLENFPE 482
Query: 467 TPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYT 516
P GIFC GEIGR + ++ + EE +S + LH YS+VYL++SYT
Sbjct: 483 LPFGGIFCDGEIGR----SLILEEGEEKKEVSIQRFLHVYSSVYLIVSYT 528
>sp|Q9ZQF0|FB104_ARATH F-box protein At2g15640 OS=Arabidopsis thaliana GN=At2g15640 PE=2
SV=1
Length = 426
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 12 DLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDK 69
DL ILSRLPA S A CV+K W + K + S P L A++E +++
Sbjct: 9 DLTVEILSRLPAKSVARFHCVSKQWGSIFGSPYFKELFLTRSSTKPRLLFAMAEKVNE 66
>sp|Q9SIV7|FB108_ARATH F-box protein At2g16450 OS=Arabidopsis thaliana GN=At2g16450 PE=2
SV=1
Length = 427
Score = 37.0 bits (84), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 12 DLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDK 69
DL+ ILSRLPA S CV+K W + K + S P L A++E +K
Sbjct: 9 DLILEILSRLPAKSVRRFHCVSKRWASIFGSPYFKELFLTRSSTKPRLLFAIAEKGNK 66
>sp|Q8UJ65|RECF_AGRT5 DNA replication and repair protein RecF OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=recF PE=3 SV=1
Length = 376
Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 303 LTARMEGYDGLLHGEEILEDIKEHIDDKYPYLYIGVIHQRGSLQFGSRSYMSLYEVLGAE 362
LTA M GY +L +L++I H+D+ +IH G F + + +++ LG
Sbjct: 308 LTANMTGYAPVL----LLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALGER 363
Query: 363 DQFFIVNGVGI 373
QFF V+ GI
Sbjct: 364 AQFFNVSHGGI 374
>sp|P0C2G2|FB21_ARATH Putative F-box protein At1g30920 OS=Arabidopsis thaliana
GN=At1g30920 PE=4 SV=1
Length = 400
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 12 DLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSE 65
DL+ ILSRLP+ S A CV+K W + Q + S P L +AV +
Sbjct: 13 DLILDILSRLPSKSIARCRCVSKLWESMIRQSYFTELFLTRSSSRPHLLIAVEQ 66
>sp|Q9LQ46|FB67_ARATH F-box protein At1g59680 OS=Arabidopsis thaliana GN=At1g59680 PE=4
SV=2
Length = 364
Score = 36.6 bits (83), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 12 DLLQHILSRLPALSFASAACVNKSWNKVC-NQILSKPKLASA 52
DL+ ILSR+P S ++ C KSWN + +QI K +LA+
Sbjct: 10 DLVGEILSRVPLTSLSAVRCTCKSWNTLSKHQIFGKAELAAT 51
>sp|P0C2C9|FBX12_ARATH F-box only protein 12 OS=Arabidopsis thaliana GN=FBX12 PE=2 SV=1
Length = 404
Score = 36.2 bits (82), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 12 DLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSE 65
DL+ ILSRLPA S A CV+K W + + + + P L + V +
Sbjct: 8 DLIYEILSRLPAKSVARCRCVSKRWRSILRHQVFTELFLTRSNARPRLLIGVQQ 61
>sp|Q0ANF3|TRMFO_MARMM Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO
OS=Maricaulis maris (strain MCS10) GN=trmFO PE=3 SV=1
Length = 466
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 31/189 (16%)
Query: 92 ATHQLITARLGSRTPVITNAVTGIIGLDAH-LDEICEVKWTLLEDNLLNDFDHCYGIVLI 150
AT QL++ + PVI + + G+ G DAH D + E L+ N DH V +
Sbjct: 24 ATWQLVSQGV----PVILHEMRGVKGTDAHHTDGLAE----LVCSNSFRSDDHRTNAVGL 75
Query: 151 VGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYSASISGCSSPNGIILFGDQNIDIK 210
+ + ++++I +LR + +D +S +++ S + ++ + I
Sbjct: 76 L-HEEMRRLDSI-ILRQGDAARLPAGGALAVDRDVFSQAVTKELSEHPLVTISREEI--- 130
Query: 211 PILAEMDYGLPEETVIV--GDATS-----CFLFKTGENSQNYNGALYFFDAVALVFSRDS 263
P L D+ ++VI+ G TS L +TGE G L FFDA+A V RDS
Sbjct: 131 PALPPEDW----DSVIIATGPLTSESLSEAILKETGE------GELAFFDAIAPVVYRDS 180
Query: 264 DNSNVPEIQ 272
N+ Q
Sbjct: 181 VNTEKAWFQ 189
>sp|Q9LJB9|FB171_ARATH Putative F-box protein At3g21130 OS=Arabidopsis thaliana
GN=At3g21130 PE=4 SV=1
Length = 367
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 10 NEDLLQHILSRLPALSFASAACVNKSWNK-VCNQILSKPKLASALSLSPSLHVAVSEVLD 68
+EDL+ ILSR+ A+S A +K WN V ++ L+K A A P + ++ +
Sbjct: 11 SEDLIVEILSRVSAVSLARLRTTSKRWNALVKDERLAKKHSAYA----PRQSLVITLIDS 66
Query: 69 KVLSEPIRPHFAIASVGMQSKLAATHQL 96
+V + + I V + +KL L
Sbjct: 67 RVYLMNVSLQYGIEKVDLSAKLTGQFSL 94
>sp|Q9SA02|FB26_ARATH F-box protein At1g31080 OS=Arabidopsis thaliana GN=At1g31080 PE=2
SV=1
Length = 355
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 3 GGSAALGNEDLLQHILSRLPALSFASAACVNKSW-NKVCNQILSKPKLASALSLSPSLHV 61
SA++ N DL+ ILSRLPA S CV+K W + +C+ ++ L + S P L +
Sbjct: 5 ANSASIPN-DLILEILSRLPAKSTGRFRCVSKLWGSMLCHSYFTELFLTRS-SARPRLLI 62
Query: 62 AVSEVLDKVL---SEPIRPH 78
+ + D+ +P P+
Sbjct: 63 GIHQDGDRFFFSCPQPQSPY 82
>sp|Q0WQM8|FB58_ARATH F-box protein At1g53790 OS=Arabidopsis thaliana GN=At1g53790 PE=2
SV=1
Length = 444
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 12 DLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSL 59
DLL I SR+PA S A CV+K W + + K + S+ P L
Sbjct: 85 DLLMDIFSRVPAKSIARFRCVSKLWESILCRPDFKELFMTMSSIRPPL 132
>sp|Q9FFG9|FB282_ARATH Putative F-box protein At5g44220 OS=Arabidopsis thaliana
GN=At5g44220 PE=4 SV=1
Length = 295
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 12 DLLQHILSRLPALSFASAACVNKSWNKV 39
DL++ IL RLPA + A CV+K W+ +
Sbjct: 65 DLIKEILKRLPAKTLARFLCVSKLWSSI 92
>sp|Q9FHP3|FB300_ARATH F-box protein At5g65850 OS=Arabidopsis thaliana GN=At5g65850 PE=2
SV=1
Length = 392
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 12 DLLQHILSRLPALSFASAACVNKSW-NKVCNQILSKPKLASALSLSPSLH 60
D++ IL RLPA S A+ CV+K W + +C Q ++ L L+ SLH
Sbjct: 38 DIIIEILLRLPAKSIATCRCVSKLWISVICRQDFTE------LFLTRSLH 81
>sp|Q9LDE3|FBK9_ARATH F-box/kelch-repeat protein At1g23390 OS=Arabidopsis thaliana
GN=At1g23390 PE=2 SV=1
Length = 394
Score = 32.3 bits (72), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 12 DLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPK 48
D+L+ ILS LP L SA V+KSWN+ L + K
Sbjct: 23 DILESILSYLPLLDLDSACQVSKSWNRAVFYSLRRLK 59
>sp|Q9C629|FB35_ARATH Putative F-box protein At1g46840 OS=Arabidopsis thaliana
GN=At1g46840 PE=4 SV=1
Length = 475
Score = 32.3 bits (72), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 12 DLLQHILSRLPALSFASAACVNKSWNK-VCNQILSKPKLASALS 54
DL+ ILSRL A S A CV+K WN + +Q + L S+LS
Sbjct: 34 DLVIEILSRLSAKSIAICRCVSKQWNSLLVSQDFVESFLRSSLS 77
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,498,716
Number of Sequences: 539616
Number of extensions: 9070988
Number of successful extensions: 32468
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 32389
Number of HSP's gapped (non-prelim): 67
length of query: 522
length of database: 191,569,459
effective HSP length: 122
effective length of query: 400
effective length of database: 125,736,307
effective search space: 50294522800
effective search space used: 50294522800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)