Query 036974
Match_columns 522
No_of_seqs 145 out of 325
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:17:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4398 Uncharacterized protei 100.0 1.1E-65 2.3E-70 504.8 26.1 358 46-516 4-388 (389)
2 COG3287 Uncharacterized conser 100.0 6.4E-35 1.4E-39 302.0 25.0 343 48-480 4-362 (379)
3 PF08495 FIST: FIST N domain; 99.9 2.1E-24 4.5E-29 205.9 21.2 192 76-309 1-198 (198)
4 PF10442 FIST_C: FIST C domain 99.4 3.6E-13 7.8E-18 122.0 8.6 82 370-480 53-135 (136)
5 PF12937 F-box-like: F-box-lik 98.3 6.6E-07 1.4E-11 66.8 3.4 37 6-42 1-37 (47)
6 PF00646 F-box: F-box domain; 97.9 5.1E-06 1.1E-10 61.8 2.4 39 6-44 3-41 (48)
7 smart00256 FBOX A Receptor for 97.9 1.3E-05 2.9E-10 57.0 4.0 34 9-42 1-34 (41)
8 KOG2120 SCF ubiquitin ligase, 96.0 0.0052 1.1E-07 63.4 3.5 40 3-42 95-134 (419)
9 KOG4341 F-box protein containi 91.3 0.17 3.7E-06 54.5 3.5 39 7-45 73-111 (483)
10 KOG2997 F-box protein FBX9 [Ge 90.4 0.21 4.6E-06 52.0 3.0 37 6-42 107-148 (366)
11 KOG0281 Beta-TrCP (transducin 90.3 0.25 5.4E-06 51.9 3.4 35 7-41 76-114 (499)
12 PLN03215 ascorbic acid mannose 89.9 0.26 5.7E-06 52.6 3.4 40 5-44 3-43 (373)
13 KOG0274 Cdc4 and related F-box 76.0 1.1 2.4E-05 50.3 0.9 39 5-43 107-145 (537)
14 PF10442 FIST_C: FIST C domain 73.9 13 0.00028 33.2 7.2 58 58-118 71-135 (136)
15 PF08495 FIST: FIST N domain; 66.1 7.7 0.00017 36.6 4.1 25 456-480 19-43 (198)
16 KOG3926 F-box proteins [Amino 50.9 19 0.00041 37.1 4.0 65 4-68 200-279 (332)
17 PLN02192 3-ketoacyl-CoA syntha 50.8 15 0.00032 41.1 3.6 59 61-120 182-247 (511)
18 COG3287 Uncharacterized conser 40.2 54 0.0012 35.4 5.6 43 422-480 30-72 (379)
19 cd02067 B12-binding B12 bindin 38.4 60 0.0013 28.3 4.9 48 63-112 39-89 (119)
20 PLN02854 3-ketoacyl-CoA syntha 37.8 23 0.00051 39.7 2.6 88 30-120 143-259 (521)
21 PF03808 Glyco_tran_WecB: Glyc 37.2 1.9E+02 0.0041 27.3 8.4 38 62-102 89-126 (172)
22 cd01979 Pchlide_reductase_N Pc 36.5 76 0.0016 34.1 6.2 86 28-117 34-131 (396)
23 PRK02842 light-independent pro 34.8 69 0.0015 34.8 5.6 88 28-117 43-142 (427)
24 cd06533 Glyco_transf_WecG_TagA 34.1 1.9E+02 0.0041 27.3 7.8 34 66-102 91-124 (171)
25 PLN00415 3-ketoacyl-CoA syntha 33.9 26 0.00057 38.8 2.2 57 62-119 141-204 (466)
26 PLN02757 sirohydrochlorine fer 33.1 1.6E+02 0.0034 27.7 7.0 68 32-102 28-104 (154)
27 PF08392 FAE1_CUT1_RppA: FAE1/ 32.1 39 0.00085 35.2 3.0 60 61-120 89-154 (290)
28 COG3900 Predicted periplasmic 29.0 32 0.0007 34.4 1.7 27 268-294 183-209 (262)
29 PLN02377 3-ketoacyl-CoA syntha 29.0 28 0.00062 38.9 1.5 57 61-119 178-242 (502)
30 PF00072 Response_reg: Respons 28.8 3E+02 0.0066 22.4 7.6 69 34-112 8-78 (112)
31 PLN02932 3-ketoacyl-CoA syntha 25.9 38 0.00082 37.7 1.7 59 61-120 154-219 (478)
32 COG3573 Predicted oxidoreducta 23.7 98 0.0021 33.3 4.1 59 421-509 471-529 (552)
33 TIGR00696 wecB_tagA_cpsF bacte 22.6 3.8E+02 0.0083 25.6 7.7 10 34-43 35-44 (177)
34 cd02071 MM_CoA_mut_B12_BD meth 22.6 1.3E+02 0.0028 26.7 4.2 69 38-111 17-88 (122)
35 cd01967 Nitrogenase_MoFe_alpha 21.6 2.4E+02 0.0052 30.0 6.8 51 59-117 75-131 (406)
36 cd01968 Nitrogenase_NifE_I Nit 21.1 2.2E+02 0.0048 30.6 6.4 52 59-118 74-131 (410)
37 COG1984 DUR1 Allophanate hydro 20.8 4.1E+02 0.009 28.1 8.0 89 285-391 199-294 (314)
38 PLN03168 chalcone synthase; Pr 20.6 60 0.0013 35.0 1.9 57 61-119 107-171 (389)
39 PF13013 F-box-like_2: F-box-l 20.6 1.2E+02 0.0026 27.0 3.6 34 6-39 22-58 (109)
40 TIGR02370 pyl_corrinoid methyl 20.4 1.5E+02 0.0033 28.6 4.6 48 63-112 124-175 (197)
41 PRK02261 methylaspartate mutas 20.3 1.7E+02 0.0037 26.7 4.6 45 63-109 43-90 (137)
No 1
>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.1e-65 Score=504.82 Aligned_cols=358 Identities=20% Similarity=0.277 Sum_probs=325.4
Q ss_pred cCeEEEEEecCCCHHHHHHHHHHHHhCCCC-CCcEEEEEecC-CC--CHHHHHHHHHHHhCCCCCcEEEee-ccEEcCCc
Q 036974 46 KPKLASALSLSPSLHVAVSEVLDKVLSEPI-RPHFAIASVGM-QS--KLAATHQLITARLGSRTPVITNAV-TGIIGLDA 120 (522)
Q Consensus 46 ~~~~~sa~S~~~d~~~A~~E~~~ql~~~~~-~p~l~lvF~S~-~y--d~~~Ll~~L~~~l~~~~~~vvGCt-aGiIg~~~ 120 (522)
+|+|..|.|+.|+++.|+.|++.|+..++. ..++.++|.|+ .| +..+++.++.+.+. +|.+|||. .|||+...
T Consensus 4 ~~~w~nAlstRpsle~A~~ea~~~a~~~l~g~~~l~~v~l~Sra~~~~aa~vlp~v~e~ls--~p~lIGC~~~giia~~~ 81 (389)
T COG4398 4 GVGWSNALSTRPSLERAAVEAAAQARDELAGEAPLLAVLLGSRAHTDRAADVLPAVQEMLS--PPALIGCIAQGIVAGRH 81 (389)
T ss_pred cceeecccccchhHHHHHHHHHHHhhhcccCCCCEEEEEecccchhhhHHHHHHHHHHhcC--ccceeeecccceeeeee
Confidence 689999999999999999999999998765 66899999999 56 78899999999998 99999999 99997654
Q ss_pred cccchhheehhhhcccccCCCCCCceEEEEEecCCCceEEEEEecCCCCCchHHHHHHHHhhhhhcccCCCCCCCceEEE
Q 036974 121 HLDEICEVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYSASISGCSSPNGII 200 (522)
Q Consensus 121 ~~~~~~Eve~~~~~~~~~~~~~~~~~i~l~~~~lpg~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 200 (522)
|+| +++++++|+++ |+.+++|+++..+. .+.+|++.. ++.+......|+
T Consensus 82 ------ElE-------------~E~A~s~~lA~--Gv~~~~F~l~~~~t-~~~a~i~~~---------~~d~t~~~~~il 130 (389)
T COG4398 82 ------ELE-------------DEPAVSVWLAS--GVAAETFHLDFVRT-GSGALITGY---------RFDRTARDLHLL 130 (389)
T ss_pred ------eec-------------CCceEEEEecc--CcccceeecccccC-CCcceEEee---------ecCCCCCCceEE
Confidence 999 99999999997 99999999776653 446888776 455556677899
Q ss_pred EeCCCCCChHHHHHHHhhcCCCccEEEeecCC------ceeeeccCCCCCCCCceeeCceEEEEEeecCCCCCCCceeEE
Q 036974 201 LFGDQNIDIKPILAEMDYGLPEETVIVGDATS------CFLFKTGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFD 274 (522)
Q Consensus 201 l~Dg~s~~~e~vl~~L~~al~~~pv~GG~Asd------~~~f~~~~~~~~~~g~~~~~gAVgl~~~~~~~~~~~g~i~f~ 274 (522)
|.|+++...+.+++.|+.+||+..++||.+|+ +++|++ +.++.+|.|++.+ .| +...
T Consensus 131 L~dp~t~~~n~li~~l~~~~PgttvvGG~~Sgg~~~G~~~Lf~~--------~~~~~~G~vGv~L--------~G-i~l~ 193 (389)
T COG4398 131 LPDPYTFPSNLLIEHLNTDLPGTTVVGGVVSGGRRRGDTRLFRD--------HDVLTSGVVGVRL--------PG-IRLV 193 (389)
T ss_pred ccCCcccchHHHhhccCcCCCCceEEccEeecCccCCceEEeec--------CCcccCceeEEee--------cc-ceec
Confidence 99999999999999999999999999999987 666764 4799999999999 99 9999
Q ss_pred EeeecCceecCCcEEEEeeccCCCcc-eEEeeccccCCCccc-hHHHHhhhhhccccc-CCceEEEEeccCCCccccccc
Q 036974 275 ITMSTGVLPFGPELKAVSVKEHNADC-SLLTARMEGYDGLLH-GEEILEDIKEHIDDK-YPYLYIGVIHQRGSLQFGSRS 351 (522)
Q Consensus 275 ~~vsqG~~PiG~~~~VT~~d~~~a~r-vV~Eldge~~~~al~-~~~~l~~l~~~~~~~-~~~l~iGv~~~~~~~~~~~~~ 351 (522)
..++|||||||++|+|| +++| +|.||++ +|+|. |++++..|+++++++ ++.|+|||++++.+..+.
T Consensus 194 ~vVsQGCRPIGeP~iVt-----~a~~niItEl~g---r~PL~~Lr~ii~~lsp~er~L~~~~L~iGi~~DE~~~~~~--- 262 (389)
T COG4398 194 PVVSQGCRPIGEPYIVT-----GADGNIITELGG---RPPLQRLREIVEGLSPDERALVSHGLQIGIVVDEHLAAPG--- 262 (389)
T ss_pred chhccCcccCCCceEee-----ccCceeEeecCC---CChHHHHHHHhhccChhhHHHHhcCceEEEEehhhhcCCC---
Confidence 99999999999999999 9999 9999988 58899 999999999999999 999999999999976666
Q ss_pred ccceeeecCCcceEEEEc-------------CcccCCCCEEEEEecCHHHHhccchhhHHHHHHhhhccCCCcccccccC
Q 036974 352 YMSLYEVLGAEDQFFIVN-------------GVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCCGTIGRNVTN 418 (522)
Q Consensus 352 ~~~~~~~~ggd~~flvR~-------------~~~v~~G~~~~f~~rd~~~A~~~~~~~~~dl~~l~~~~~~~~~~~~~~~ 418 (522)
+|| |+||+ |+-|++|+++||++||++++.+ ||+-+++++. ++.
T Consensus 263 --------qGD--FlIR~lLG~DPs~GaIaIgd~Vr~G~~lQF~~RD~~as~~-------dL~~l~er~~-----~e~-- 318 (389)
T COG4398 263 --------QGD--FLIRGLLGADPSTGAIAIGEVVRVGATLQFQVRDAAAADK-------DLRLLVERAA-----AEL-- 318 (389)
T ss_pred --------CCc--eEeeeccccCCCCCceeecceeccCcEEEEEEcccccchh-------HHHHHHHHHH-----hhC--
Confidence 889 99999 7899999999999999999999 9998888764 333
Q ss_pred CCCceeEEEEEEeCCCCCCCCCCCCCCCCCCCCCcccchhhHHhhCCCCCeeeeccCcccCCCCccccccccccccccCC
Q 036974 419 ANKEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSIS 498 (522)
Q Consensus 419 ~~~~p~gaL~FsC~gRG~~lfg~~~~~~~~~~~~~~~e~~~~~~~l~~~PlaGff~~GEIg~~~~~~~~~~~~~~~~~~~ 498 (522)
+.++.|+|+|||+|||..||| .+|+|+++|.+.|+++|++||||+||||| + +
T Consensus 319 -~~~avGaLmFsC~GRG~~m~G-----------~p~~Ds~~~~~~~~gipl~GFF~~GEIGp---V----~--------- 370 (389)
T COG4398 319 -PGRAVGALLFTCNGRGRRMFG-----------VPDHDASTIEELLGGIPLAGFFAAGEIGP---V----A--------- 370 (389)
T ss_pred -CCccceeEEEEecCccccccC-----------CCCccHHHHHHHhCCCcccceeecCcccc---c----c---------
Confidence 577899999999999999999 99999999999999999999999999999 7 7
Q ss_pred CCceeeeeeEEEEEEecC
Q 036974 499 GRCLLHHYSTVYLVMSYT 516 (522)
Q Consensus 499 ~~~~lhgyT~v~~l~~~~ 516 (522)
++|+|||||+++++|..+
T Consensus 371 gr~~LHG~Ts~~ai~~~~ 388 (389)
T COG4398 371 GRNALHGFTASMALFVDD 388 (389)
T ss_pred chhhhhccceeeEEEeec
Confidence 899999999999999764
No 2
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.4e-35 Score=301.96 Aligned_cols=343 Identities=16% Similarity=0.181 Sum_probs=258.0
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHhCCCCCCcEEEEEecCCC-CHHHHHHHHHHHhCCCCCcEEEee-ccEEcCCccccch
Q 036974 48 KLASALSLSPSLHVAVSEVLDKVLSEPIRPHFAIASVGMQS-KLAATHQLITARLGSRTPVITNAV-TGIIGLDAHLDEI 125 (522)
Q Consensus 48 ~~~sa~S~~~d~~~A~~E~~~ql~~~~~~p~l~lvF~S~~y-d~~~Ll~~L~~~l~~~~~~vvGCt-aGiIg~~~~~~~~ 125 (522)
...++.+...|....++|+.+++.+. +++++++|.++.+ ++..|.++|++.+| ++ .++||| +|+|+++++
T Consensus 4 ~~~~~v~~~~d~~~v~~e~~~~~~~~--~~~~~~ifF~~~~~~~~~l~~~l~~~~p-g~-~liGCSTaGeitp~g~---- 75 (379)
T COG3287 4 TLKRGVSDGKDAESVIEEMARQLGSD--RSDFVLIFFSPERDEHVQLASALKQAFP-GI-CLIGCSTAGEITPDGF---- 75 (379)
T ss_pred eeeccCcCcCCHHHHHHHHHHhhCcC--CCCeEEEEeccccccHHHHHHHHHhhCC-CC-eEeccccCceEccccc----
Confidence 34466678889999999999999876 8999998888876 66799999999999 35 599999 999998887
Q ss_pred hheehhhhcccccCCCCCCceEEEEEecCCCceEEE-EEecCCCC---CchHHHHHHHHhhhhhcccCCCCCCCceEEEE
Q 036974 126 CEVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVET-IPLLRSKE---EPEFSMVDKFLMDIRHYSASISGCSSPNGIIL 201 (522)
Q Consensus 126 ~Eve~~~~~~~~~~~~~~~~~i~l~~~~lpg~~v~~-~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll 201 (522)
.++++++|++..+.+.+-. ..+.+.+. .+..+.++.+..+.+ ...+...+.++|+|
T Consensus 76 -----------------~~~~V~il~~~~~~~a~~s~~~~~~~s~~~~~~i~~~~E~l~~~~~---~~~~~~r~~~~l~f 135 (379)
T COG3287 76 -----------------KNGSVLLLAFDSSEFAALSTALVDRESPVSRDPIAEAIERLIRDKR---DRLSPTRPVLALTF 135 (379)
T ss_pred -----------------cCCeEEEEEechHHHHHhhhhhccccCcccchhHHHHHHHHHhccc---ccccccCceEEEEE
Confidence 7899999999888766655 44444432 333344444433221 11333456899999
Q ss_pred eCCCCCChHHHHH-HHhhcCCCccEEEeecCCceeeeccCCCCCCCCceeeCceEEEEEeecCCCCCCCceeEEEeeecC
Q 036974 202 FGDQNIDIKPILA-EMDYGLPEETVIVGDATSCFLFKTGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFDITMSTG 280 (522)
Q Consensus 202 ~Dg~s~~~e~vl~-~L~~al~~~pv~GG~Asd~~~f~~~~~~~~~~g~~~~~gAVgl~~~~~~~~~~~g~i~f~~~vsqG 280 (522)
+|+++..++.+++ .....+..+|+|||+|+|++.|.+ ++...+|.++.++||.+++ .+.+.|..+.++|
T Consensus 136 ~dgl~~~ee~l~~~~~~~~~~~iPi~GGsAaD~~~~e~--t~v~~~g~v~~~aavi~l~--------~t~l~f~~~~~~g 205 (379)
T COG3287 136 IDGLSTSEEVLLDGAVLAALETIPIFGGSAADDLEFER--TYVFDEGEVHEDAAVILLF--------GTQLKFGHGFAHG 205 (379)
T ss_pred eccCCcchhhhhhhhhcccccceeeeccccCCCCccce--EEEEEccccccCceEEEEe--------cceEEeecccccc
Confidence 9999999999999 777888999999999999766653 4555568999999999999 9999999999999
Q ss_pred ceecCCcEEEEeeccCCCcc-eEEeeccccCCCccc-hHHHHhhhhhccccc---CCceEEEEeccCCCcccccccccce
Q 036974 281 VLPFGPELKAVSVKEHNADC-SLLTARMEGYDGLLH-GEEILEDIKEHIDDK---YPYLYIGVIHQRGSLQFGSRSYMSL 355 (522)
Q Consensus 281 ~~PiG~~~~VT~~d~~~a~r-vV~Eldge~~~~al~-~~~~l~~l~~~~~~~---~~~l~iGv~~~~~~~~~~~~~~~~~ 355 (522)
|.|++.+++|| +++. +|+||||| ||.+ +++.++ -.++.... ...+..
T Consensus 206 ~~Pt~~~~~VT-----ka~~~vV~EiDge---PA~e~Y~e~vg-~~e~l~~~~~~~~pl~~------------------- 257 (379)
T COG3287 206 FVPTDKTGVVT-----KADGDVVYEIDGE---PAAEEYAEVVG-AVEELDPEMFIPNPLGV------------------- 257 (379)
T ss_pred eEEccceEEEE-----eecCcEEEEeCCC---cHHHHHHHHhC-chhhcChhHhcccceEE-------------------
Confidence 99999999999 6666 99999996 5655 566655 11111111 122211
Q ss_pred eeecCCcceEEEEcCcccCCCCEEEEEecCH-HHHh---ccchhhHHHHHHhhhccCCCcccccccCCCCceeEEEEEEe
Q 036974 356 YEVLGAEDQFFIVNGVGIKPGDSFIFYHSDS-DTAS---SSSIDVLDGLRLLNASSCCGTIGRNVTNANKEVFGGLIFSC 431 (522)
Q Consensus 356 ~~~~ggd~~flvR~~~~v~~G~~~~f~~rd~-~~A~---~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~p~gaL~FsC 431 (522)
.+.+ ..|+||....+.....+.|+.+.. +.+. .+..+|...+++.+.+.. +.. ++++.+.|.|+|
T Consensus 258 -~~~~--~~y~vr~p~~~~e~~~~~f~~~~i~~~v~lr~~~~~~~~~~~e~~~~~a~-----~~~---~~~~~~vl~f~C 326 (379)
T COG3287 258 -RDLG--PLYYVRAPQFVDEEGGLIFLSAAIPLGVVLRLGETGGIERVTERALRRAF-----EDL---PKAPALVLVFDC 326 (379)
T ss_pred -EeCC--CcEEEeCcceeccccceEEeeccCCCccEEEeecCCcccHHHHHHHHHHH-----hhc---cCCCceEEEEeh
Confidence 1111 359999988888888888888443 3222 222335667777776543 332 455999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccchhhHHhhCCCCCeeeeccCcccCC
Q 036974 432 FSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGIFCYGEIGR 480 (522)
Q Consensus 432 ~gRG~~lfg~~~~~~~~~~~~~~~e~~~~~~~l~~~PlaGff~~GEIg~ 480 (522)
.+| .++- +.+.+.+.+++.+|+=|++||+||||+++
T Consensus 327 ~~R--~l~~-----------~~~~~~~~~~e~l~~~~~vGf~tyGE~~~ 362 (379)
T COG3287 327 ALR--RLFL-----------DTDKERQPLKEQLPEDPCVGFNTYGEQGP 362 (379)
T ss_pred hhh--hhhh-----------hhhhhhhHHHHhcccCceecccccccccc
Confidence 999 4555 67889999999999889999999999999
No 3
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=99.93 E-value=2.1e-24 Score=205.88 Aligned_cols=192 Identities=18% Similarity=0.169 Sum_probs=149.3
Q ss_pred CCcEEEEEecCCCCHHH-HHHHHHHHhCCCCCcEEEee-ccEEcC--CccccchhheehhhhcccccCCCCCCceEEEEE
Q 036974 76 RPHFAIASVGMQSKLAA-THQLITARLGSRTPVITNAV-TGIIGL--DAHLDEICEVKWTLLEDNLLNDFDHCYGIVLIV 151 (522)
Q Consensus 76 ~p~l~lvF~S~~yd~~~-Ll~~L~~~l~~~~~~vvGCt-aGiIg~--~~~~~~~~Eve~~~~~~~~~~~~~~~~~i~l~~ 151 (522)
||+|+++|+|+.|+.+. +.+.|++.+| ..+++||| +|+|.. .++ ...+++++.
T Consensus 1 ~p~lvi~f~s~~~~~~~~i~~~l~~~~p--~~~iiG~st~g~i~~~~~~~---------------------~~~~v~~~~ 57 (198)
T PF08495_consen 1 RPDLVILFCSPEYDEEAKILEALRERLP--DAPIIGCSTAGEICGGNEGY---------------------SDDGVSLLG 57 (198)
T ss_pred CCEEEEEEecchhhhhHHHHHHHHHHCC--CCcEEEEccCchhCCCcCCC---------------------CCccEEEEE
Confidence 69999999999998888 9999999999 55699999 999999 443 677888888
Q ss_pred ecCCCceEEEEEecCCCCCchHHHHHHHHhhhhhcccCCCCCCCceEEEEeCCCCCChHHHHHHH-hhcCCCccEEEeec
Q 036974 152 GYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYSASISGCSSPNGIILFGDQNIDIKPILAEM-DYGLPEETVIVGDA 230 (522)
Q Consensus 152 ~~lpg~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~Dg~s~~~e~vl~~L-~~al~~~pv~GG~A 230 (522)
+..+.+++........+..+............. ........++|+|+|+++..++.+++.| +...++.|+|||+|
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~d~~~~~~~~~l~~l~~~~~~~~~i~GG~a 133 (198)
T PF08495_consen 58 FSSSEVRVFASLIDPFSEDPIEAAREALRDLVK----SLDSDPSPFLLLFADGLSSSEEELLEGLYSSVGPDIPIFGGSA 133 (198)
T ss_pred ecCCcEEEEEEEccccCCCcHHHHHHHHHHHHh----hccccCCcEEEEEeCCCCcCHHHHHHHHHHhcCCCceEEEEEC
Confidence 766666666665544332222122211111111 1111226799999999999999999999 88889999999999
Q ss_pred CCceeeeccCCCCCCCCceeeCceEEEEEeecCCCCCCCceeEEEeeecCceecCCcEEEEeeccCCCcc-eEEeecccc
Q 036974 231 TSCFLFKTGENSQNYNGALYFFDAVALVFSRDSDNSNVPEIQFDITMSTGVLPFGPELKAVSVKEHNADC-SLLTARMEG 309 (522)
Q Consensus 231 sd~~~f~~~~~~~~~~g~~~~~gAVgl~~~~~~~~~~~g~i~f~~~vsqG~~PiG~~~~VT~~d~~~a~r-vV~Eldge~ 309 (522)
++...+.. +..+.+++++++++|+++| .+++++.+.++|||+|+|++|+|| ++++ +|+|||++|
T Consensus 134 ~~~~~~~~--~~v~~~~~~~~~g~v~~~~--------~~~l~~~~~~~~g~~p~g~~~~VT-----~a~~~~I~eld~~P 198 (198)
T PF08495_consen 134 GDNLDFER--TYVFANGQVYSDGAVVVAF--------SGSLKIDSFVSHGWEPIGKPMTVT-----KAEGNIIYELDGRP 198 (198)
T ss_pred CCCCcCCc--eEEEEeeeeccCcEEEEEE--------cCCceEEEEEecCeEeCCCCEEEE-----EecCCEEEEECCcC
Confidence 99554432 2333347999999999999 999999999999999999999999 7777 999999965
No 4
>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes. The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=99.43 E-value=3.6e-13 Score=122.04 Aligned_cols=82 Identities=22% Similarity=0.340 Sum_probs=67.5
Q ss_pred CcccCCCCEEEEEecCHHHHhccchhhHHHHHHhhhccCCCcccccccCCCCceeEEEEEEeCCCCCCCCCCCCCCCCCC
Q 036974 370 GVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCCGTIGRNVTNANKEVFGGLIFSCFSRSVPLSEDDDGDDDED 449 (522)
Q Consensus 370 ~~~v~~G~~~~f~~rd~~~A~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~p~gaL~FsC~gRG~~lfg~~~~~~~~~ 449 (522)
...|++|+.|+|+.++++...+ .+++.+.... ..+|.++|+|+|++| ..++++
T Consensus 53 ~~~v~eG~~v~l~~~~~~~~~~-------~~~~~~~~~~-----------~~~p~~~l~f~C~~R-~~~l~~-------- 105 (136)
T PF10442_consen 53 AGDVPEGSEVQLMEGDPEDIIE-------SAEEALEKAP-----------GPPPEGALIFSCIGR-RLFLGE-------- 105 (136)
T ss_pred eeecCCCCEEEEEcCCHHHHHH-------HHHHHHHhhc-----------CCCceEEEEEECCCC-HHHhCc--------
Confidence 4579999999999999998888 4555444332 467999999999999 445562
Q ss_pred CCCcccchhhHHhhCC-CCCeeeeccCcccCC
Q 036974 450 DNDVYFESYPFCRNFP-ETPLAGIFCYGEIGR 480 (522)
Q Consensus 450 ~~~~~~e~~~~~~~l~-~~PlaGff~~GEIg~ 480 (522)
..+.|.+.+++.+| ++|++||||||||+|
T Consensus 106 --~~~~e~~~~~~~~~~~~p~~Gf~t~GEi~~ 135 (136)
T PF10442_consen 106 --RFDEELEAFQEILGGDAPFIGFYTYGEIGP 135 (136)
T ss_pred --chHHHHHHHHHHhCCCCCEEEEcccccccc
Confidence 66778999999998 499999999999998
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.28 E-value=6.6e-07 Score=66.78 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=32.5
Q ss_pred ccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHH
Q 036974 6 AALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQ 42 (522)
Q Consensus 6 ~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~ 42 (522)
+..+|+||+.+|+++||.++++++++|||.||++++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence 4679999999999999999999999999999999953
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.95 E-value=5.1e-06 Score=61.82 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=33.1
Q ss_pred ccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHHHh
Q 036974 6 AALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQIL 44 (522)
Q Consensus 6 ~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~il 44 (522)
|..+|+|++++|+++||.+++++.++|||.||++++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~ 41 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPR 41 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCC
Confidence 567999999999999999999999999999999998753
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.91 E-value=1.3e-05 Score=57.03 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=32.0
Q ss_pred CcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHH
Q 036974 9 GNEDLLQHILSRLPALSFASAACVNKSWNKVCNQ 42 (522)
Q Consensus 9 ~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~ 42 (522)
+|+||+.+|+++||.++++++++|||.|+++++.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999998864
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.0052 Score=63.40 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=37.3
Q ss_pred CCcccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHH
Q 036974 3 GGSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQ 42 (522)
Q Consensus 3 ~~~~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~ 42 (522)
|..|..+|+||++.|++.||-|.|.+++-|||.||+|++.
T Consensus 95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~d 134 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASD 134 (419)
T ss_pred CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccc
Confidence 5678999999999999999999999999999999998864
No 9
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.35 E-value=0.17 Score=54.49 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=35.9
Q ss_pred cCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHHHhc
Q 036974 7 ALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILS 45 (522)
Q Consensus 7 ~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~il~ 45 (522)
-.+|+|++..|+++|+.|++.+++.||+.|+.+|-....
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~ 111 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSC 111 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccc
Confidence 368999999999999999999999999999999977655
No 10
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=90.38 E-value=0.21 Score=51.96 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=32.4
Q ss_pred ccCCcHHHHHHHHhhCCh-----hhhhhhhhhhHHHHHHHHH
Q 036974 6 AALGNEDLLQHILSRLPA-----LSFASAACVNKSWNKVCNQ 42 (522)
Q Consensus 6 ~~~~~~~~~~~il~~~p~-----~~~~~~~~v~~~w~~~~~~ 42 (522)
|.-||+|||-.||.++=- .||-++|||||=|+.+|+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~ 148 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARD 148 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcC
Confidence 577999999999987654 8999999999999999863
No 11
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=90.26 E-value=0.25 Score=51.90 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=31.3
Q ss_pred cCCc----HHHHHHHHhhCChhhhhhhhhhhHHHHHHHH
Q 036974 7 ALGN----EDLLQHILSRLPALSFASAACVNKSWNKVCN 41 (522)
Q Consensus 7 ~~~~----~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~ 41 (522)
.++| ++|.+|||++|+++||..+-=|||.|+++-.
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~ 114 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLS 114 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhc
Confidence 3567 9999999999999999999999999997654
No 12
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=89.94 E-value=0.26 Score=52.64 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=34.7
Q ss_pred cccCCcHHHHHHHHhhCCh-hhhhhhhhhhHHHHHHHHHHh
Q 036974 5 SAALGNEDLLQHILSRLPA-LSFASAACVNKSWNKVCNQIL 44 (522)
Q Consensus 5 ~~~~~~~~~~~~il~~~p~-~~~~~~~~v~~~w~~~~~~il 44 (522)
+-+-+|+||+..|.++||. .++.+..+|||+||..+.+.-
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~ 43 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG 43 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc
Confidence 3567999999999999965 479999999999999888753
No 13
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=76.01 E-value=1.1 Score=50.28 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=35.4
Q ss_pred cccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHHH
Q 036974 5 SAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQI 43 (522)
Q Consensus 5 ~~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~i 43 (522)
.+..+|.|+...||++||.+++++++.||+.|+.+++.-
T Consensus 107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~ 145 (537)
T KOG0274|consen 107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDD 145 (537)
T ss_pred hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhcc
Confidence 356899999999999999999999999999999988754
No 14
>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes. The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=73.94 E-value=13 Score=33.22 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCcEEEEEecCCC------CHHHHHHHHHHHhCCCCCcEEEee-ccEEcC
Q 036974 58 SLHVAVSEVLDKVLSEPIRPHFAIASVGMQS------KLAATHQLITARLGSRTPVITNAV-TGIIGL 118 (522)
Q Consensus 58 d~~~A~~E~~~ql~~~~~~p~l~lvF~S~~y------d~~~Ll~~L~~~l~~~~~~vvGCt-aGiIg~ 118 (522)
+..+.+++.++++... +|.++|+|....- ..+.=++.+++.++.++| ++||. -|||++
T Consensus 71 ~~~~~~~~~~~~~~~~--~p~~~l~f~C~~R~~~l~~~~~~e~~~~~~~~~~~~p-~~Gf~t~GEi~~ 135 (136)
T PF10442_consen 71 DIIESAEEALEKAPGP--PPEGALIFSCIGRRLFLGERFDEELEAFQEILGGDAP-FIGFYTYGEIGP 135 (136)
T ss_pred HHHHHHHHHHHhhcCC--CceEEEEEECCCCHHHhCcchHHHHHHHHHHhCCCCC-EEEEcccccccc
Confidence 3455666666666322 7888888766432 233337889999984355 99999 999986
No 15
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=66.10 E-value=7.7 Score=36.61 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=23.6
Q ss_pred chhhHHhhCCCCCeeeeccCcccCC
Q 036974 456 ESYPFCRNFPETPLAGIFCYGEIGR 480 (522)
Q Consensus 456 e~~~~~~~l~~~PlaGff~~GEIg~ 480 (522)
-.+.+++.||+.+++|.-+.|||..
T Consensus 19 i~~~l~~~~p~~~iiG~st~g~i~~ 43 (198)
T PF08495_consen 19 ILEALRERLPDAPIIGCSTAGEICG 43 (198)
T ss_pred HHHHHHHHCCCCcEEEEccCchhCC
Confidence 6789999999999999999999987
No 16
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=50.91 E-value=19 Score=37.14 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=41.9
Q ss_pred CcccCCcHHHHHHHHhhCCh-hhhhhhhhh----------hHHHHHHHHHHhcc----CeEEEEEecCCCHHHHHHHHHH
Q 036974 4 GSAALGNEDLLQHILSRLPA-LSFASAACV----------NKSWNKVCNQILSK----PKLASALSLSPSLHVAVSEVLD 68 (522)
Q Consensus 4 ~~~~~~~~~~~~~il~~~p~-~~~~~~~~v----------~~~w~~~~~~il~~----~~~~sa~S~~~d~~~A~~E~~~ 68 (522)
--|.-+|+|++.|||.|||. .+|.++|.| -|+|+++|+.=... -.....-+.+-||..+--.+..
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L~r 279 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQLRR 279 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHHHH
Confidence 34677999999999999986 456666555 58999999754331 1112222344567666555443
No 17
>PLN02192 3-ketoacyl-CoA synthase
Probab=50.79 E-value=15 Score=41.14 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCcE-------EEeeccEEcCCc
Q 036974 61 VAVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVI-------TNAVTGIIGLDA 120 (522)
Q Consensus 61 ~A~~E~~~ql~~~~~~p~l~lvF~S~~yd~~~Ll~~L~~~l~~~~~~v-------vGCtaGiIg~~~ 120 (522)
.|+++++++..-.+..+|+.++.+|..+..+.+...+.++++-+ +.+ .||++|+++-+-
T Consensus 182 ~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr-~~i~afdLsgmGCSggl~aLdl 247 (511)
T PLN02192 182 GAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR-GNILSYNLGGMGCSAGLISIDL 247 (511)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC-CCceEEEcccchhhhHHHHHHH
Confidence 44555555554444467888888887667899999999999832 123 588888888653
No 18
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=40.16 E-value=54 Score=35.40 Aligned_cols=43 Identities=26% Similarity=0.156 Sum_probs=33.9
Q ss_pred ceeEEEEEEeCCCCCCCCCCCCCCCCCCCCCcccchhhHHhhCCCCCeeeeccCcccCC
Q 036974 422 EVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGIFCYGEIGR 480 (522)
Q Consensus 422 ~p~gaL~FsC~gRG~~lfg~~~~~~~~~~~~~~~e~~~~~~~l~~~PlaGff~~GEIg~ 480 (522)
++..+++|.|.-|= +...-++++++.+|+.+++|+-|.|||-|
T Consensus 30 ~~~~~~ifF~~~~~----------------~~~~l~~~l~~~~pg~~liGCSTaGeitp 72 (379)
T COG3287 30 RSDFVLIFFSPERD----------------EHVQLASALKQAFPGICLIGCSTAGEITP 72 (379)
T ss_pred CCCeEEEEeccccc----------------cHHHHHHHHHhhCCCCeEeccccCceEcc
Confidence 45678888874331 22357789999999999999999999987
No 19
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=38.36 E-value=60 Score=28.26 Aligned_cols=48 Identities=10% Similarity=0.046 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCCCCCcEEEEEecCCC---CHHHHHHHHHHHhCCCCCcEEEee
Q 036974 63 VSEVLDKVLSEPIRPHFAIASVGMQS---KLAATHQLITARLGSRTPVITNAV 112 (522)
Q Consensus 63 ~~E~~~ql~~~~~~p~l~lvF~S~~y---d~~~Ll~~L~~~l~~~~~~vvGCt 112 (522)
.+++.+.+... +|+++.+.++..+ +..++.+.+++..+.+++.++|..
T Consensus 39 ~~~l~~~~~~~--~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 39 PEEIVEAAKEE--DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred HHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 55666666666 7999999888655 567888888888552466666655
No 20
>PLN02854 3-ketoacyl-CoA synthase
Probab=37.78 E-value=23 Score=39.72 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=55.2
Q ss_pred hhhhHHHHHHHHHHhcc---------CeEEEEEecCC--CHH-----------HHHHHHHHHHhCCCCCCcEEEEEecCC
Q 036974 30 ACVNKSWNKVCNQILSK---------PKLASALSLSP--SLH-----------VAVSEVLDKVLSEPIRPHFAIASVGMQ 87 (522)
Q Consensus 30 ~~v~~~w~~~~~~il~~---------~~~~sa~S~~~--d~~-----------~A~~E~~~ql~~~~~~p~l~lvF~S~~ 87 (522)
+|.+....+--.|||.| |+-. ++..| ..+ .|+++++++..-.+..+|+.++-+|+.
T Consensus 143 ~~~~~~~~~f~~~~~~~sg~g~~ty~P~~~--~~~~~~~~~~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~ 220 (521)
T PLN02854 143 GSFEDETVQFQRRISTRSGLGDETYLPRGI--TSRPPNLCMEEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLF 220 (521)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCccccCccc--cCCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCC
Confidence 67778888888888774 2221 12222 333 334444444443333678888877765
Q ss_pred CCHHHHHHHHHHHhCCCCCcE-------EEeeccEEcCCc
Q 036974 88 SKLAATHQLITARLGSRTPVI-------TNAVTGIIGLDA 120 (522)
Q Consensus 88 yd~~~Ll~~L~~~l~~~~~~v-------vGCtaGiIg~~~ 120 (522)
+..+.+...+.++++-+ +.+ .||++|+++-+-
T Consensus 221 ~p~PSlAa~I~n~LGlr-~~i~afdLsgmGCSggl~aL~l 259 (521)
T PLN02854 221 NPTPSLSAMIVNHYKLR-TDIKSYNLGGMGCSAGLISIDL 259 (521)
T ss_pred CCCCCHHHHHHHHhCCC-CCceEEecccchhhhHHHHHHH
Confidence 56788999999999832 133 588888888653
No 21
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=37.15 E-value=1.9e+02 Score=27.30 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCCCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 036974 62 AVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLG 102 (522)
Q Consensus 62 A~~E~~~ql~~~~~~p~l~lvF~S~~yd~~~Ll~~L~~~l~ 102 (522)
..+++++.+... +||++++-.+.. ..+..+...+++++
T Consensus 89 ~~~~i~~~I~~~--~pdiv~vglG~P-kQE~~~~~~~~~l~ 126 (172)
T PF03808_consen 89 EEEAIINRINAS--GPDIVFVGLGAP-KQERWIARHRQRLP 126 (172)
T ss_pred hHHHHHHHHHHc--CCCEEEEECCCC-HHHHHHHHHHHHCC
Confidence 344444444433 455444444322 33455555555555
No 22
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=36.49 E-value=76 Score=34.08 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=53.6
Q ss_pred hhhhhhHHHHHHHHHHhccCeEEEEEecCCCH------HHHHHHHHHHHhCCCCCCcEEEEEecCCC-----CHHHHHHH
Q 036974 28 SAACVNKSWNKVCNQILSKPKLASALSLSPSL------HVAVSEVLDKVLSEPIRPHFAIASVGMQS-----KLAATHQL 96 (522)
Q Consensus 28 ~~~~v~~~w~~~~~~il~~~~~~sa~S~~~d~------~~A~~E~~~ql~~~~~~p~l~lvF~S~~y-----d~~~Ll~~ 96 (522)
..+|..-.|+..-.++.+.+++.++.=...|. .+-+++++..+.... +|++.+++.|+-- |.+.+...
T Consensus 34 p~gC~~~~~~~~~~~~~~~~~~~~t~l~E~dvv~g~gg~~~L~~aI~ei~~~~-~P~~I~V~sTCv~e~IGDDi~~v~~~ 112 (396)
T cd01979 34 TKTCAHFLQNALGVMIFAEPRFAMAELEEGDLSALLNDYAELDRVVTQIKRDR-NPSVIFLIGSCTTEVIKMDLEGAAPR 112 (396)
T ss_pred chhHHHHHHhhhccEeecCCcceeeecCchhhhhccCchHHHHHHHHHHHHhc-CCCEEEEECCCHHHHHhcCHHHHHHH
Confidence 45777666664333556677876442222220 223444444443321 4788888888753 99999999
Q ss_pred HHHHhCCCCCcEEEee-ccEEc
Q 036974 97 ITARLGSRTPVITNAV-TGIIG 117 (522)
Q Consensus 97 L~~~l~~~~~~vvGCt-aGiIg 117 (522)
++++.+ .+ +|.+. .|.-|
T Consensus 113 ~~~~~~--~p-vi~v~t~gf~g 131 (396)
T cd01979 113 LSAEIG--VP-ILVASASGLDY 131 (396)
T ss_pred HhhcCC--Cc-EEEeeCCCccc
Confidence 998866 66 89899 89765
No 23
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=34.77 E-value=69 Score=34.85 Aligned_cols=88 Identities=13% Similarity=0.217 Sum_probs=58.9
Q ss_pred hhhhhhHHHHHHHHHHhccCeEEEEEecCCC------HHHHHHHHHHHHhCCCCCCcEEEEEecCCC-----CHHHHHHH
Q 036974 28 SAACVNKSWNKVCNQILSKPKLASALSLSPS------LHVAVSEVLDKVLSEPIRPHFAIASVGMQS-----KLAATHQL 96 (522)
Q Consensus 28 ~~~~v~~~w~~~~~~il~~~~~~sa~S~~~d------~~~A~~E~~~ql~~~~~~p~l~lvF~S~~y-----d~~~Ll~~ 96 (522)
..+|..-+|+....+++++++|.+..=...| -.+-+.+++.++.....+|++.+++.|+-- |.+.+.+.
T Consensus 43 p~gCa~~~~~~~~~~~~~~~~~~tt~l~E~div~~~Gg~~~L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDDi~~v~~e 122 (427)
T PRK02842 43 SRTCAHLLQSAAGVMIFAEPRFGTAILEEGDLAGLADANEELDRVVEELIKRRPNISVLFLVGSCPSEVIKLDLEGLAER 122 (427)
T ss_pred CCcchhhhhhhcccEeecCCccceeccCcchhhhcCCcHHHHHHHHHHHHhccCCCCEEEEECCChHHhhcCCHHHHHHH
Confidence 4678777766443355667888653322222 134556666664444336899999988854 99999999
Q ss_pred HHHHhCCCCCcEEEee-ccEEc
Q 036974 97 ITARLGSRTPVITNAV-TGIIG 117 (522)
Q Consensus 97 L~~~l~~~~~~vvGCt-aGiIg 117 (522)
++++++ +.+ +|-+. .|.-|
T Consensus 123 ~~~~~~-~~p-vv~v~t~Gf~g 142 (427)
T PRK02842 123 LSTEFA-GVP-VLNYSGSGLET 142 (427)
T ss_pred hhcccC-CCe-EEEeeCCCccc
Confidence 999985 255 88888 88866
No 24
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=34.07 E-value=1.9e+02 Score=27.27 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=17.3
Q ss_pred HHHHHhCCCCCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 036974 66 VLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLG 102 (522)
Q Consensus 66 ~~~ql~~~~~~p~l~lvF~S~~yd~~~Ll~~L~~~l~ 102 (522)
+++++... .||++++-.+.- ..+..+...++.++
T Consensus 91 i~~~I~~~--~pdiv~vglG~P-kQE~~~~~~~~~l~ 124 (171)
T cd06533 91 IIERINAS--GADILFVGLGAP-KQELWIARHKDRLP 124 (171)
T ss_pred HHHHHHHc--CCCEEEEECCCC-HHHHHHHHHHHHCC
Confidence 45555444 455555544433 33555555555554
No 25
>PLN00415 3-ketoacyl-CoA synthase
Probab=33.93 E-value=26 Score=38.80 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCcE-------EEeeccEEcCC
Q 036974 62 AVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVI-------TNAVTGIIGLD 119 (522)
Q Consensus 62 A~~E~~~ql~~~~~~p~l~lvF~S~~yd~~~Ll~~L~~~l~~~~~~v-------vGCtaGiIg~~ 119 (522)
|+++++++..-.+...|++++.+|..+..+.+...+.++++=+ +.+ .||++|+++-.
T Consensus 141 A~~~aL~~aGi~p~dID~LIvs~T~~~~~Pslaa~l~~~LGLr-~~v~~~dL~gmGCsggv~aL~ 204 (466)
T PLN00415 141 ALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYKLK-TDVKTYNLSGMGCSAGAISVD 204 (466)
T ss_pred HHHHHHHHcCCCHHHCCEEEEECcCCCCCchHHHHHHHHhCCC-CCceEEEeccccchHHHHHHH
Confidence 4444445444444467888877775557899999999998832 233 47887777754
No 26
>PLN02757 sirohydrochlorine ferrochelatase
Probab=33.06 E-value=1.6e+02 Score=27.65 Aligned_cols=68 Identities=12% Similarity=0.012 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHhccCeE---EEEE--ecCCCHHHHHHHHHHHHhCCCCCCcEEEEEecCCC----CHHHHHHHHHHHhC
Q 036974 32 VNKSWNKVCNQILSKPKL---ASAL--SLSPSLHVAVSEVLDKVLSEPIRPHFAIASVGMQS----KLAATHQLITARLG 102 (522)
Q Consensus 32 v~~~w~~~~~~il~~~~~---~sa~--S~~~d~~~A~~E~~~ql~~~~~~p~l~lvF~S~~y----d~~~Ll~~L~~~l~ 102 (522)
.|..++++|+++..++.+ ..++ ...|++.++++++.++ ... +.-++=+|.+.+. |.++.++.++++.+
T Consensus 28 a~~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~-g~~--~vvVvP~FL~~G~H~~~DIp~~v~~~~~~~p 104 (154)
T PLN02757 28 SNLMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQ-GAS--RVIVSPFFLSPGRHWQEDIPALTAEAAKEHP 104 (154)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHC-CCC--EEEEEEhhhcCCcchHhHHHHHHHHHHHHCC
Confidence 345566667776544322 2333 3579999999888764 211 2222223555543 68889999999988
No 27
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=32.07 E-value=39 Score=35.17 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC----cE--EEeeccEEcCCc
Q 036974 61 VAVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTP----VI--TNAVTGIIGLDA 120 (522)
Q Consensus 61 ~A~~E~~~ql~~~~~~p~l~lvF~S~~yd~~~Ll~~L~~~l~~~~~----~v--vGCtaGiIg~~~ 120 (522)
.|+++++++..-.|...|+.++.+|--+.-+.|.+.|.++++-+.. ++ .||++|+|+-+-
T Consensus 89 ~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr~di~~~nLsGMGCsAgliai~l 154 (290)
T PF08392_consen 89 GAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMRSDIKSYNLSGMGCSAGLIAIDL 154 (290)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCCcCeeeecccCCcchhhHHHHHH
Confidence 4555566665555557788988888777778999999999883221 12 468888888753
No 28
>COG3900 Predicted periplasmic protein [Function unknown]
Probab=28.98 E-value=32 Score=34.45 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.4
Q ss_pred CCceeEEEeeecCceecCCcEEEEeec
Q 036974 268 VPEIQFDITMSTGVLPFGPELKAVSVK 294 (522)
Q Consensus 268 ~g~i~f~~~vsqG~~PiG~~~~VT~~d 294 (522)
..++-|++-++||-+|+.-+++||+=+
T Consensus 183 ~ddvDfqIWIsqGeqpvp~k~VITsk~ 209 (262)
T COG3900 183 KDDVDFQIWISQGEQPVPLKYVITSKD 209 (262)
T ss_pred CCCCceEEEeecCCCCcceeEEEEecc
Confidence 456789999999999999999999644
No 29
>PLN02377 3-ketoacyl-CoA synthase
Probab=28.96 E-value=28 Score=38.89 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-cE-------EEeeccEEcCC
Q 036974 61 VAVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTP-VI-------TNAVTGIIGLD 119 (522)
Q Consensus 61 ~A~~E~~~ql~~~~~~p~l~lvF~S~~yd~~~Ll~~L~~~l~~~~~-~v-------vGCtaGiIg~~ 119 (522)
.|+++++++..-.+..+|+.++-+|+.+..+.+...|.++++ .+ .+ .||++|+++-+
T Consensus 178 ~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG--lr~~v~afdL~gmGCsggl~aL~ 242 (502)
T PLN02377 178 GALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK--LRGNIRSFNLGGMGCSAGVIAVD 242 (502)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC--CCCCCeEEecccchhhHHHHHHH
Confidence 445555555544444678887767766678889999999998 33 22 47777777764
No 30
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=28.78 E-value=3e+02 Score=22.44 Aligned_cols=69 Identities=12% Similarity=0.079 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccCeE-EEEEecCCCHHHHHHHHHHHHhCCCCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCcEEEe
Q 036974 34 KSWNKVCNQILSKPKL-ASALSLSPSLHVAVSEVLDKVLSEPIRPHFAIASVG-MQSKLAATHQLITARLGSRTPVITNA 111 (522)
Q Consensus 34 ~~w~~~~~~il~~~~~-~sa~S~~~d~~~A~~E~~~ql~~~~~~p~l~lvF~S-~~yd~~~Ll~~L~~~l~~~~~~vvGC 111 (522)
..+++...+.|+...+ ... ...+. .++.+.+... .|+++++=.. +..+..++++.|++..+ ...++-+
T Consensus 8 ~~~~~~l~~~l~~~~~~~v~--~~~~~----~~~~~~~~~~--~~d~iiid~~~~~~~~~~~~~~i~~~~~--~~~ii~~ 77 (112)
T PF00072_consen 8 PEIRELLEKLLERAGYEEVT--TASSG----EEALELLKKH--PPDLIIIDLELPDGDGLELLEQIRQINP--SIPIIVV 77 (112)
T ss_dssp HHHHHHHHHHHHHTTEEEEE--EESSH----HHHHHHHHHS--TESEEEEESSSSSSBHHHHHHHHHHHTT--TSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEE--EECCH----HHHHHHhccc--CceEEEEEeeeccccccccccccccccc--cccEEEe
Confidence 3455566666665555 333 22333 3444444444 5888888543 34688899999999886 3446655
Q ss_pred e
Q 036974 112 V 112 (522)
Q Consensus 112 t 112 (522)
|
T Consensus 78 t 78 (112)
T PF00072_consen 78 T 78 (112)
T ss_dssp E
T ss_pred c
Confidence 5
No 31
>PLN02932 3-ketoacyl-CoA synthase
Probab=25.85 E-value=38 Score=37.69 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCcE-------EEeeccEEcCCc
Q 036974 61 VAVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVI-------TNAVTGIIGLDA 120 (522)
Q Consensus 61 ~A~~E~~~ql~~~~~~p~l~lvF~S~~yd~~~Ll~~L~~~l~~~~~~v-------vGCtaGiIg~~~ 120 (522)
.|+++++++..-.+...|+.++.+|..+..+.+...+.++++-. +.+ .||++|+++-+-
T Consensus 154 ~Aa~~aL~~agi~p~dId~lIv~tst~~~~Pslaa~V~~~lGlr-~~i~~fdL~gmGCSggl~aL~l 219 (478)
T PLN02932 154 GAVDNLFRNTGISPSDIGILVVNSSTFNPTPSLSSILVNKFKLR-DNIKSLNLGGMGCSAGVIAIDA 219 (478)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEccCCCCCCcHHHHHHHHhCCC-CCceEEEeccchhhhHHHHHHH
Confidence 45555555554444467888877776667788899999999821 234 688888888653
No 32
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=23.70 E-value=98 Score=33.29 Aligned_cols=59 Identities=15% Similarity=0.330 Sum_probs=42.7
Q ss_pred CceeEEEEEEeCCCCCCCCCCCCCCCCCCCCCcccchhhHHhhCCCCCeeeeccCcccCCCCccccccccccccccCCCC
Q 036974 421 KEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGR 500 (522)
Q Consensus 421 ~~p~gaL~FsC~gRG~~lfg~~~~~~~~~~~~~~~e~~~~~~~l~~~PlaGff~~GEIg~~~~~~~~~~~~~~~~~~~~~ 500 (522)
.-|+-++-..-..|.. |.| -+.+.++..+.. .+.|+.|.|+.||.+- + |-
T Consensus 471 ~GPLIAVrLhiLTRKt-LGG----------l~TdL~~rVl~A--~GqPvpgLyAaGEvAG---F--------------GG 520 (552)
T COG3573 471 NGPLIAVRLHILTRKT-LGG----------LETDLDARVLGA--DGQPVPGLYAAGEVAG---F--------------GG 520 (552)
T ss_pred cCceEEEEEEeeeehh-ccC----------cccchhhhhhCC--CCCCCcchhhcchhcc---c--------------CC
Confidence 3577888888888876 545 155666554432 3799999999999987 6 45
Q ss_pred ceeeeeeEE
Q 036974 501 CLLHHYSTV 509 (522)
Q Consensus 501 ~~lhgyT~v 509 (522)
..+|||.+.
T Consensus 521 GG~HGY~AL 529 (552)
T COG3573 521 GGVHGYRAL 529 (552)
T ss_pred Ccccchhhh
Confidence 788999764
No 33
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=22.59 E-value=3.8e+02 Score=25.63 Aligned_cols=10 Identities=10% Similarity=0.474 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 036974 34 KSWNKVCNQI 43 (522)
Q Consensus 34 ~~w~~~~~~i 43 (522)
.++..++++.
T Consensus 35 dl~~~l~~~~ 44 (177)
T TIGR00696 35 DLMEELCQRA 44 (177)
T ss_pred HHHHHHHHHH
Confidence 4444555444
No 34
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.58 E-value=1.3e+02 Score=26.67 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=39.6
Q ss_pred HHHHHHhccCeEEEEEecCCCHHHHHHHHHHHHhCCCCCCcEEEEEecCCC---CHHHHHHHHHHHhCCCCCcEEEe
Q 036974 38 KVCNQILSKPKLASALSLSPSLHVAVSEVLDKVLSEPIRPHFAIASVGMQS---KLAATHQLITARLGSRTPVITNA 111 (522)
Q Consensus 38 ~~~~~il~~~~~~sa~S~~~d~~~A~~E~~~ql~~~~~~p~l~lvF~S~~y---d~~~Ll~~L~~~l~~~~~~vvGC 111 (522)
+++...|+..-|..-....-.+ .+++++.+... .|+++.++++... .+.++++.|++..+.+++.++|.
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~vp---~e~~~~~a~~~--~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLRQT---PEEIVEAAIQE--DVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred HHHHHHHHHCCCEEEECCCCCC---HHHHHHHHHHc--CCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 3444555555555433332222 33555555554 6898888877664 56778888888744335545543
No 35
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=21.56 E-value=2.4e+02 Score=30.05 Aligned_cols=51 Identities=20% Similarity=0.344 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEEEecCCC-----CHHHHHHHHHHHhCCCCCcEEEee-ccEEc
Q 036974 59 LHVAVSEVLDKVLSEPIRPHFAIASVGMQS-----KLAATHQLITARLGSRTPVITNAV-TGIIG 117 (522)
Q Consensus 59 ~~~A~~E~~~ql~~~~~~p~l~lvF~S~~y-----d~~~Ll~~L~~~l~~~~~~vvGCt-aGiIg 117 (522)
+.+|+.++.++. +|++.+++.|+-- |.+.+...++++.+ .+ ++-|. .|..+
T Consensus 75 L~~~i~~~~~~~-----~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~--~~-vi~v~t~gf~g 131 (406)
T cd01967 75 LKKAIKEAYERF-----PPKAIFVYSTCPTGLIGDDIEAVAKEASKELG--IP-VIPVNCEGFRG 131 (406)
T ss_pred HHHHHHHHHHhC-----CCCEEEEECCCchhhhccCHHHHHHHHHHhhC--CC-EEEEeCCCeeC
Confidence 344444444433 5888888877754 89999999998887 66 99999 99988
No 36
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.06 E-value=2.2e+02 Score=30.63 Aligned_cols=52 Identities=17% Similarity=0.354 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEEEecCCC-----CHHHHHHHHHHHhCCCCCcEEEee-ccEEcC
Q 036974 59 LHVAVSEVLDKVLSEPIRPHFAIASVGMQS-----KLAATHQLITARLGSRTPVITNAV-TGIIGL 118 (522)
Q Consensus 59 ~~~A~~E~~~ql~~~~~~p~l~lvF~S~~y-----d~~~Ll~~L~~~l~~~~~~vvGCt-aGiIg~ 118 (522)
+.+|++++.++. +|++.+++.|+-- |.+.+.+.++++++ .+ ++-|. .|.-+.
T Consensus 74 L~~~i~~~~~~~-----~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~--~~-vi~v~t~gf~g~ 131 (410)
T cd01968 74 LYKAILEIIERY-----HPKAVFVYSTCVVALIGDDIDAVCKTASEKFG--IP-VIPVHSPGFVGN 131 (410)
T ss_pred HHHHHHHHHHhC-----CCCEEEEECCCchhhhccCHHHHHHHHHHhhC--CC-EEEEECCCcccC
Confidence 345555555542 5888888888754 99999999999886 76 89999 888664
No 37
>COG1984 DUR1 Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
Probab=20.80 E-value=4.1e+02 Score=28.07 Aligned_cols=89 Identities=15% Similarity=0.037 Sum_probs=48.6
Q ss_pred CCcEEEEeeccCCCcceEEeeccccCCCccchHHHHhhhhhccccc-CCceEEEEeccCCCcccccccccceeeecCCcc
Q 036974 285 GPELKAVSVKEHNADCSLLTARMEGYDGLLHGEEILEDIKEHIDDK-YPYLYIGVIHQRGSLQFGSRSYMSLYEVLGAED 363 (522)
Q Consensus 285 G~~~~VT~~d~~~a~rvV~Eldge~~~~al~~~~~l~~l~~~~~~~-~~~l~iGv~~~~~~~~~~~~~~~~~~~~~ggd~ 363 (522)
..+|+||+ +++|.=|-|.|++-.+ .+ ..++ +.....|..-=-...+|.. .|.-++..||..
T Consensus 199 ~~~w~vt~----~SdRmG~RL~G~~l~~-~~-----------~~e~~S~~v~~GaIQVPp~GqPII--l~~D~qttGGYp 260 (314)
T COG1984 199 REPWQVTS----QSDRMGYRLQGEPLEH-TE-----------DRELISEGVVLGAIQVPPGGQPII--LLADAQTTGGYP 260 (314)
T ss_pred hCCEEecc----cccceEEEecCCCCCC-CC-----------CcccccCccccceEeeCCCCceEE--EeCCCCCCCCCc
Confidence 57899996 8888777787865333 11 1112 2333333221111122321 122344445542
Q ss_pred --eEEEEc----CcccCCCCEEEEEecCHHHHhc
Q 036974 364 --QFFIVN----GVGIKPGDSFIFYHSDSDTASS 391 (522)
Q Consensus 364 --~flvR~----~~~v~~G~~~~f~~rd~~~A~~ 391 (522)
-.++.. -.++++|++|+|..-+-++|.+
T Consensus 261 kia~Vi~~DL~~lAQ~~pG~~vrF~~~~~~ea~~ 294 (314)
T COG1984 261 KIATVIEADLPKLAQIRPGSKVRFVPISLEEALA 294 (314)
T ss_pred eeEEEehhhhhHHhccCCCCeEEEEECCHHHHHH
Confidence 111111 4589999999999999998875
No 38
>PLN03168 chalcone synthase; Provisional
Probab=20.61 E-value=60 Score=34.96 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCcEE--------EeeccEEcCC
Q 036974 61 VAVSEVLDKVLSEPIRPHFAIASVGMQSKLAATHQLITARLGSRTPVIT--------NAVTGIIGLD 119 (522)
Q Consensus 61 ~A~~E~~~ql~~~~~~p~l~lvF~S~~yd~~~Ll~~L~~~l~~~~~~vv--------GCtaGiIg~~ 119 (522)
+|+++++++..-.+..+|++++..+..|..+.+...|.+++| .+.-+ ||++|+.+-.
T Consensus 107 ~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG--l~~~~~r~~d~~~gC~g~~~aL~ 171 (389)
T PLN03168 107 EAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG--LKPTVKRVMMYQTGCFGGASVLR 171 (389)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC--cCCcceeeeeeCCccHHHHHHHH
Confidence 555555555544433677777655555777888889999998 33222 6666655543
No 39
>PF13013 F-box-like_2: F-box-like domain
Probab=20.60 E-value=1.2e+02 Score=26.99 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=27.7
Q ss_pred ccCCcHHHHHHHHhhCChhhhhhhhhhhH---HHHHH
Q 036974 6 AALGNEDLLQHILSRLPALSFASAACVNK---SWNKV 39 (522)
Q Consensus 6 ~~~~~~~~~~~il~~~p~~~~~~~~~v~~---~w~~~ 39 (522)
+.-+|.||++.|+..|....+....-.|+ +|+..
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~ 58 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH 58 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999999999988877776 44444
No 40
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=20.37 E-value=1.5e+02 Score=28.64 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCCCCcEEEEEecCCC---CHHHHHHHHHHH-hCCCCCcEEEee
Q 036974 63 VSEVLDKVLSEPIRPHFAIASVGMQS---KLAATHQLITAR-LGSRTPVITNAV 112 (522)
Q Consensus 63 ~~E~~~ql~~~~~~p~l~lvF~S~~y---d~~~Ll~~L~~~-l~~~~~~vvGCt 112 (522)
.+++++.+... +|+++.+.++..+ .+.++++.|++. .+.+++.+||-.
T Consensus 124 ~e~~v~~~~~~--~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~ 175 (197)
T TIGR02370 124 IDTVVEKVKKE--KPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGA 175 (197)
T ss_pred HHHHHHHHHHc--CCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEECh
Confidence 44555555544 7999999988877 456777788887 333356666544
No 41
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=20.31 E-value=1.7e+02 Score=26.75 Aligned_cols=45 Identities=7% Similarity=-0.048 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCCCCcEEEEEecCCC---CHHHHHHHHHHHhCCCCCcEE
Q 036974 63 VSEVLDKVLSEPIRPHFAIASVGMQS---KLAATHQLITARLGSRTPVIT 109 (522)
Q Consensus 63 ~~E~~~ql~~~~~~p~l~lvF~S~~y---d~~~Ll~~L~~~l~~~~~~vv 109 (522)
.+++++.+... +|+++.+.+.... ...++++.|++....+.+.++
T Consensus 43 ~e~i~~~a~~~--~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~v 90 (137)
T PRK02261 43 QEEFIDAAIET--DADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYV 90 (137)
T ss_pred HHHHHHHHHHc--CCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEE
Confidence 45566666555 7888888776654 567888889888443454444
Done!