Query 036974
Match_columns 522
No_of_seqs 145 out of 325
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 11:59:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.4 1.5E-07 5.2E-12 70.7 3.9 39 3-41 6-44 (53)
2 2e31_A FBS1, F-box only protei 97.8 1.2E-05 4E-10 81.6 4.4 39 3-41 48-87 (297)
3 3l2o_B F-box only protein 4; s 97.4 5.4E-05 1.8E-09 76.7 2.7 51 4-54 3-61 (312)
4 3v7d_B Cell division control p 97.1 0.00015 5E-09 74.5 2.7 37 6-42 15-51 (464)
5 1p22_A F-BOX/WD-repeat protein 97.0 0.00024 8.1E-09 73.0 2.8 37 6-42 11-51 (435)
6 2ovr_B FBW7, F-BOX/WD repeat p 96.9 0.00045 1.6E-08 70.8 3.6 37 5-41 18-54 (445)
7 2ast_B S-phase kinase-associat 96.3 0.0019 6.5E-08 64.0 3.7 39 3-41 6-44 (336)
8 2p1m_B Transport inhibitor res 95.6 0.0072 2.5E-07 64.5 4.1 38 4-41 4-42 (594)
9 3ogk_B Coronatine-insensitive 93.6 0.03 1E-06 59.7 3.0 36 7-42 14-50 (592)
10 2xdq_A Light-independent proto 40.7 39 0.0013 35.3 6.4 83 28-118 44-142 (460)
11 2yxb_A Coenzyme B12-dependent 21.8 1.2E+02 0.0043 26.9 5.5 46 63-110 58-106 (161)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.41 E-value=1.5e-07 Score=70.71 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=34.9
Q ss_pred CCcccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHH
Q 036974 3 GGSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCN 41 (522)
Q Consensus 3 ~~~~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~ 41 (522)
+..+..+|+||+.+||++||.++++++++|||.||++++
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 357889999999999999999999999999999999986
No 2
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.80 E-value=1.2e-05 Score=81.60 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=36.5
Q ss_pred CCcccCCcHHHHHHHHhhCChhhhh-hhhhhhHHHHHHHH
Q 036974 3 GGSAALGNEDLLQHILSRLPALSFA-SAACVNKSWNKVCN 41 (522)
Q Consensus 3 ~~~~~~~~~~~~~~il~~~p~~~~~-~~~~v~~~w~~~~~ 41 (522)
...+..||+||+..||++||+++|+ +++||||.||++++
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence 4578899999999999999999999 99999999999986
No 3
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.40 E-value=5.4e-05 Score=76.69 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=42.2
Q ss_pred CcccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHHH------hc--cCeEEEEEe
Q 036974 4 GSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQI------LS--KPKLASALS 54 (522)
Q Consensus 4 ~~~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~i------l~--~~~~~sa~S 54 (522)
+.++.+|.||+.+||++|++++++++++|||.||.+|+.= +. .++|.+-..
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~ 61 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDW 61 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCG
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCcccc
Confidence 4688999999999999999999999999999999999742 22 256775443
No 4
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.14 E-value=0.00015 Score=74.51 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=34.6
Q ss_pred ccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHHH
Q 036974 6 AALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQ 42 (522)
Q Consensus 6 ~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~~ 42 (522)
+..||+||+.+||++||.++|+++++|||.||++++.
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 5679999999999999999999999999999999874
No 5
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.02 E-value=0.00024 Score=72.98 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=33.5
Q ss_pred ccCCcHH----HHHHHHhhCChhhhhhhhhhhHHHHHHHHH
Q 036974 6 AALGNED----LLQHILSRLPALSFASAACVNKSWNKVCNQ 42 (522)
Q Consensus 6 ~~~~~~~----~~~~il~~~p~~~~~~~~~v~~~w~~~~~~ 42 (522)
+..||+| |+.+||++||+++|+++++|||.||++++.
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence 4568999 999999999999999999999999988753
No 6
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.88 E-value=0.00045 Score=70.83 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=34.4
Q ss_pred cccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHH
Q 036974 5 SAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCN 41 (522)
Q Consensus 5 ~~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~ 41 (522)
-+..||+|++.+||++||.++|+++++|||.||++++
T Consensus 18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT
T ss_pred hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcC
Confidence 3678999999999999999999999999999998875
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.34 E-value=0.0019 Score=64.01 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=36.0
Q ss_pred CCcccCCcHHHHHHHHhhCChhhhhhhhhhhHHHHHHHH
Q 036974 3 GGSAALGNEDLLQHILSRLPALSFASAACVNKSWNKVCN 41 (522)
Q Consensus 3 ~~~~~~~~~~~~~~il~~~p~~~~~~~~~v~~~w~~~~~ 41 (522)
+..|+.+|+||+.+|+++||.+++.+++.|||.|++++.
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 356889999999999999999999999999999999984
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.56 E-value=0.0072 Score=64.48 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=30.5
Q ss_pred CcccCCcHHHHHHHHhhCC-hhhhhhhhhhhHHHHHHHH
Q 036974 4 GSAALGNEDLLQHILSRLP-ALSFASAACVNKSWNKVCN 41 (522)
Q Consensus 4 ~~~~~~~~~~~~~il~~~p-~~~~~~~~~v~~~w~~~~~ 41 (522)
--++.+|+||+++||++|| .++..+++.|||.|+++..
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~ 42 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIER 42 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhh
Confidence 3477899999999999999 9999999999999999943
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.62 E-value=0.03 Score=59.72 Aligned_cols=36 Identities=17% Similarity=0.358 Sum_probs=33.0
Q ss_pred cCCcHHHHHHHHhhC-ChhhhhhhhhhhHHHHHHHHH
Q 036974 7 ALGNEDLLQHILSRL-PALSFASAACVNKSWNKVCNQ 42 (522)
Q Consensus 7 ~~~~~~~~~~il~~~-p~~~~~~~~~v~~~w~~~~~~ 42 (522)
..+|+|++++||++| |.+++.+++.|||.|+.+...
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~ 50 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE 50 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc
Confidence 469999999999999 999999999999999999543
No 10
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=40.73 E-value=39 Score=35.28 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=57.3
Q ss_pred hhhhhhHHHHHHHHHHhccCeEEEEEecCC----------CHHHHHHHHHHHHhCCCCCCcEEEEEecCC-----CCHHH
Q 036974 28 SAACVNKSWNKVCNQILSKPKLASALSLSP----------SLHVAVSEVLDKVLSEPIRPHFAIASVGMQ-----SKLAA 92 (522)
Q Consensus 28 ~~~~v~~~w~~~~~~il~~~~~~sa~S~~~----------d~~~A~~E~~~ql~~~~~~p~l~lvF~S~~-----yd~~~ 92 (522)
-.+|..-+|+....+....++|.++.-... .+.+|+.++.+.. +|++.+++.|+- -|++.
T Consensus 44 p~GC~~~~~~~~~~~~f~e~~~~~t~l~E~div~~~Gg~ekL~~~i~~~~~~~-----~P~~I~v~~TC~~~iIGdDi~~ 118 (460)
T 2xdq_A 44 TKTCGYFLQNAMGVMIFAEPRYAMAELEEGDISAQLNDYEELKRLCLEIKRDR-----NPSVIVWIGTCTTEIIKMDLEG 118 (460)
T ss_dssp CHHHHHHHHHHTGGGGGSCCSEEEEECCHHHHTTSSCHHHHHHHHHHHHHHHH-----CCSEEEEEECHHHHHTTCCHHH
T ss_pred CCcccchhhhhhhhhcccCCccccccCchhhhhhhcCChHHHHHHHHHHHHhc-----CCCEEEEECCCHHHHHhhCHHH
Confidence 468999999765455566677766542221 1234444444433 588888887774 39999
Q ss_pred HHHHHHHHhCCCCCcEEEee-ccEEcC
Q 036974 93 THQLITARLGSRTPVITNAV-TGIIGL 118 (522)
Q Consensus 93 Ll~~L~~~l~~~~~~vvGCt-aGiIg~ 118 (522)
+...++++++ +| ||.|. .|.-+.
T Consensus 119 v~~~~~~~~~--ip-Vi~v~~~Gf~~~ 142 (460)
T 2xdq_A 119 LAPKLEAEIG--IP-IVVARANGLDYA 142 (460)
T ss_dssp HHHHHHHHHS--SC-EEEEECCTTTCC
T ss_pred HHHHHhhccC--Cc-EEEEecCCcccc
Confidence 9999999998 77 99999 887764
No 11
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=21.78 E-value=1.2e+02 Score=26.85 Aligned_cols=46 Identities=11% Similarity=0.008 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCCCCcEEEEEecCCC---CHHHHHHHHHHHhCCCCCcEEE
Q 036974 63 VSEVLDKVLSEPIRPHFAIASVGMQS---KLAATHQLITARLGSRTPVITN 110 (522)
Q Consensus 63 ~~E~~~ql~~~~~~p~l~lvF~S~~y---d~~~Ll~~L~~~l~~~~~~vvG 110 (522)
.+++++.+... .|+++.+.++... ...++++.|++.-..+++.++|
T Consensus 58 ~e~lv~aa~~~--~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 58 PEQVAMAAVQE--DVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp HHHHHHHHHHT--TCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred HHHHHHHHHhc--CCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 34455555544 6899988887665 5677888888864324676665
Done!