Query 036976
Match_columns 243
No_of_seqs 139 out of 1276
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 12:02:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hd1_A Squalene synthase HPNC; 100.0 4E-57 1.4E-61 394.6 21.8 230 1-236 33-289 (294)
2 3acx_A Dehydrosqualene synthas 100.0 2.7E-54 9.1E-59 376.8 26.2 227 1-233 32-290 (293)
3 3vj8_A Squalene synthase; farn 100.0 6.9E-43 2.3E-47 310.1 15.8 228 1-230 31-302 (343)
4 4f62_A Geranyltranstransferase 96.0 0.074 2.5E-06 46.0 11.3 109 63-183 167-278 (317)
5 3ts7_A Geranyltranstransferase 95.8 0.087 3E-06 45.7 11.2 110 63-184 174-286 (324)
6 3rmg_A Octaprenyl-diphosphate 95.7 0.14 4.7E-06 44.6 12.0 122 63-184 160-308 (334)
7 4dhd_A Polyprenyl synthetase; 95.7 0.053 1.8E-06 47.8 9.4 121 63-184 171-321 (358)
8 3lmd_A Geranylgeranyl pyrophos 95.6 0.11 3.7E-06 45.8 11.1 120 64-184 187-334 (360)
9 3p8r_A Geranyltranstransferase 95.5 0.13 4.4E-06 44.2 11.2 111 62-184 173-286 (302)
10 3lsn_A Geranyltranstransferase 95.5 0.099 3.4E-06 45.0 10.4 109 63-183 168-279 (304)
11 3apz_A Geranyl diphosphate syn 95.5 0.87 3E-05 39.7 16.5 132 54-185 169-325 (348)
12 3uca_A Geranyltranstransferase 95.4 0.14 4.8E-06 44.4 10.9 110 63-184 197-308 (324)
13 3lom_A Geranyltranstransferase 95.4 0.12 4.1E-06 44.6 10.4 109 63-184 175-287 (313)
14 3mzv_A Decaprenyl diphosphate 95.3 0.16 5.6E-06 44.3 11.3 122 62-184 165-315 (341)
15 1rtr_A Geranyltranstransferase 95.2 0.17 5.8E-06 43.4 10.9 110 63-184 164-275 (301)
16 3pko_A Geranylgeranyl pyrophos 95.2 0.22 7.5E-06 43.3 11.7 121 62-184 169-316 (334)
17 3nf2_A Putative polyprenyl syn 95.2 0.16 5.3E-06 44.6 10.7 121 62-183 169-324 (352)
18 2h8o_A Geranyltranstransferase 94.9 0.15 5.3E-06 44.4 9.7 109 63-183 208-318 (335)
19 3p8l_A Geranyltranstransferase 94.8 0.14 4.8E-06 44.0 9.2 109 63-183 172-282 (302)
20 3oyr_A Trans-isoprenyl diphosp 94.6 0.59 2E-05 40.8 12.7 123 62-184 177-327 (345)
21 3aqb_B Component B of hexapren 94.4 0.29 9.9E-06 42.3 10.3 122 63-184 157-307 (325)
22 3tc1_A Octaprenyl pyrophosphat 94.3 0.45 1.5E-05 41.0 11.2 120 62-184 148-293 (315)
23 3ipi_A Geranyltranstransferase 94.2 0.34 1.2E-05 41.4 10.2 117 54-184 143-266 (295)
24 2q80_A Geranylgeranyl pyrophos 94.2 0.51 1.7E-05 40.4 11.2 119 63-184 139-282 (301)
25 2j1p_A Geranylgeranyl pyrophos 94.1 0.71 2.4E-05 39.3 12.0 110 54-188 166-280 (293)
26 2qis_A Farnesyl pyrophosphate 94.0 0.64 2.2E-05 41.0 11.8 121 64-185 209-357 (374)
27 1uby_A FPS, farnesyl diphospha 93.9 0.48 1.6E-05 41.7 10.7 122 63-185 201-350 (367)
28 1yhl_A Farnesyl pyrophosphate 93.8 0.72 2.5E-05 40.4 11.7 121 64-185 195-343 (362)
29 2her_A Fragment, farnesyl pyro 93.6 1.1 3.9E-05 39.3 12.6 146 54-203 184-355 (368)
30 1wy0_A Geranylgeranyl pyrophos 93.6 0.31 1.1E-05 42.5 8.9 121 63-184 164-324 (342)
31 2e8v_A Geranylgeranyl pyrophos 93.6 0.35 1.2E-05 42.1 9.2 74 63-137 161-246 (340)
32 1v4e_A Octoprenyl-diphosphate 93.5 0.31 1.1E-05 41.7 8.7 71 64-136 154-234 (299)
33 3pde_A Farnesyl-diphosphate sy 93.1 0.69 2.4E-05 39.7 10.1 109 63-183 171-281 (309)
34 3lk5_A Geranylgeranyl pyrophos 93.0 0.43 1.5E-05 42.2 9.0 121 63-183 202-353 (380)
35 2ihi_A Pyrophosphate synthase; 92.9 1.1 3.8E-05 39.8 11.5 120 63-184 229-378 (395)
36 3m0g_A Farnesyl diphosphate sy 92.6 0.24 8.3E-06 42.4 6.6 100 62-185 164-274 (297)
37 1wmw_A Geranylgeranyl diphosph 92.4 1.7 6E-05 37.4 11.9 74 62-137 158-243 (330)
38 1rqj_A Geranyltranstransferase 91.5 0.97 3.3E-05 38.5 9.2 109 63-183 168-279 (299)
39 3kb9_A EPI-isozizaene synthase 91.4 6.7 0.00023 34.3 14.8 134 35-177 157-314 (382)
40 2azj_A Geranylgeranyl pyrophos 90.8 3.8 0.00013 34.7 12.2 107 54-183 151-261 (289)
41 3dyh_A Farnesyl pyrophosphate 90.3 1.7 5.7E-05 38.5 9.7 120 63-185 222-371 (390)
42 3npk_A Geranyltranstransferase 89.7 3.1 0.0001 35.3 10.6 117 54-184 151-270 (291)
43 1ps1_A Pentalenene synthase; a 89.2 8.4 0.00029 32.7 13.3 147 21-176 97-271 (337)
44 2ftz_A Geranyltranstransferase 89.0 2.6 8.9E-05 35.6 9.6 105 63-183 162-267 (284)
45 3llw_A Geranyltranstransferase 86.7 11 0.00037 32.2 12.2 115 54-182 165-283 (311)
46 1n1b_A (+)-bornyl diphosphate 83.8 27 0.00091 32.2 15.6 105 61-174 387-497 (549)
47 3mav_A Farnesyl pyrophosphate 83.6 19 0.00066 31.6 12.7 118 65-184 231-378 (395)
48 2q58_A Fragment, farnesyl pyro 82.4 24 0.00083 30.7 13.8 85 99-184 237-338 (368)
49 1di1_A Aristolochene synthase; 81.0 22 0.00076 29.3 13.9 132 35-176 108-265 (300)
50 3kra_B Geranyl diphosphate syn 78.6 11 0.00038 31.5 8.9 63 54-116 155-219 (274)
51 1yfb_A Transition state regula 67.0 2 7E-05 27.3 1.2 23 126-148 20-42 (59)
52 2ong_A 4S-limonene synthase; m 63.5 91 0.0031 28.6 15.0 106 60-174 380-490 (543)
53 2l66_A SSO7C4, transcriptional 63.0 3.3 0.00011 25.5 1.6 23 126-148 10-32 (53)
54 3qkc_B Geranyl diphosphate syn 60.9 12 0.00042 31.2 5.3 63 54-116 157-220 (273)
55 3bny_A Aristolochene synthase; 56.1 86 0.0029 26.0 14.3 130 35-174 122-277 (320)
56 3g4d_A (+)-delta-cadinene synt 54.7 1.3E+02 0.0045 27.7 11.8 103 60-174 391-501 (554)
57 2qzc_A Transcriptional activat 53.4 54 0.0018 25.7 7.8 61 135-206 91-151 (214)
58 3m00_A Aristolochene synthase; 51.9 1.5E+02 0.005 27.3 12.8 100 61-173 388-495 (550)
59 2j5c_A 1,8-cineole synthase; t 47.0 1.8E+02 0.006 26.9 13.1 105 61-174 408-517 (569)
60 3n0f_A Isoprene synthase; terp 47.0 1.7E+02 0.006 26.8 16.6 106 60-174 389-499 (555)
61 4fn6_A Thiaminase-2, thiaminas 46.8 68 0.0023 25.5 7.5 63 134-207 87-152 (229)
62 3no6_A Transcriptional activat 46.7 69 0.0024 26.0 7.6 64 134-208 106-172 (248)
63 3ibx_A TENA, HP1287, putative 46.7 63 0.0021 25.5 7.2 62 134-206 91-153 (221)
64 2gm8_A TENA homolog/THI-4 thia 46.5 84 0.0029 24.7 8.0 61 135-206 96-157 (221)
65 3mvu_A TENA family transcripti 46.3 99 0.0034 24.5 8.4 62 135-207 94-156 (226)
66 3v1v_A 2-MIB synthase, 2-methy 45.7 1.6E+02 0.0055 26.0 11.0 87 60-146 280-370 (433)
67 1udd_A Transcriptional regulat 44.6 95 0.0033 24.5 8.0 61 135-206 89-150 (226)
68 2qcx_A Transcriptional activat 34.0 93 0.0032 25.4 6.4 34 135-168 115-148 (263)
69 2qyw_A Vesicle transport throu 29.6 1E+02 0.0035 21.4 5.1 46 160-205 54-99 (102)
70 1vcs_A Vesicle transport throu 28.7 1.5E+02 0.005 20.5 6.9 47 159-205 42-88 (102)
71 1yyp_B DNA polymerase, POL; pr 25.3 23 0.00079 18.5 0.7 13 128-140 3-15 (26)
72 1z72_A Transcriptional regulat 23.3 1.1E+02 0.0037 24.1 4.8 33 136-168 102-134 (225)
73 1rcw_A CT610, CADD; iron, DI-i 23.0 1E+02 0.0035 24.1 4.7 35 133-167 92-126 (231)
No 1
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=4e-57 Score=394.59 Aligned_cols=230 Identities=24% Similarity=0.338 Sum_probs=198.1
Q ss_pred CCCCChhhhHHHHHHH-------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHH--------
Q 036976 1 ALLMTEERRKAIWAIC-------------------VLDRWEERLQDIFYGRPYDMLDAALTDAVFKFPLDIK-------- 53 (243)
Q Consensus 1 ~lllp~~~R~~~~aly-------------------~L~~w~~~l~~~~~g~~~~pv~~aL~~~i~~~~l~~~-------- 53 (243)
++|+|+++|+++++|| +|+||+++++.++.|.|.||++.+|.+++++|+||.+
T Consensus 33 ~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g~~~~pv~~al~~~~~~~~l~~~~~~~li~g 112 (294)
T 4hd1_A 33 SLFVPRHLRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAFAGEATTPAFRALQFTIATCNLPMEPFLRLIEA 112 (294)
T ss_dssp TTTCCTTTHHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5799999999999999 8999999999999999999999999999999999987
Q ss_pred hhccCCCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhhhCCCcccC
Q 036976 54 MRMDTRKFRYENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDASRGRVYLP 133 (243)
Q Consensus 54 ~~~Dl~~~~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~~~gR~YlP 133 (243)
|++|+.+.+|+|++||+.||++|||+||+|+++|+|..++ +..+.|.++|.|+|+|||||||++|+++||||||
T Consensus 113 ~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~~~------~~~~~A~~lG~AlQltNilRDv~eD~~~gR~YlP 186 (294)
T 4hd1_A 113 NRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCLDD------ERARLSDATCTALQVANHMQDIDRDLALGRIYVP 186 (294)
T ss_dssp HHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCCSH------HHHHHHHHHHHHHHHHHHHHTHHHHHHTTCBCSC
T ss_pred HHhccccCCCCCHHHHHHHHHhccchHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHhchhhhccCceeCC
Confidence 9999999999999999999999999999999999998542 3578999999999999999999999999999999
Q ss_pred HhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCccCChHHHHHHHHHHHHHHHHHHCCCCCCCC
Q 036976 134 QDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEENDYDNLTK 213 (243)
Q Consensus 134 ~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~~~~~~~~~~~~~~~~iL~~l~~~~~~~~~~ 213 (243)
.|+|++||++++++.+++.+++++.++++++++|+.+|++|..++..+|+++++++.+++.+|+.||++|+++||++|++
T Consensus 187 ~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r~~~~~~~~~y~~il~~i~~~~~~~~~~ 266 (294)
T 4hd1_A 187 RADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLARQLKLYRLGGEAILAAIRRQGYNPFAG 266 (294)
T ss_dssp HHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHHHHHHHHHHHHHHHHHHHHTTTTCCC--
T ss_pred HHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccChHHHHHHHHHHHHhhccC
Q 036976 214 RAYVGRMKKYLMLPQAYNRTQSK 236 (243)
Q Consensus 214 r~~ls~~~k~~~~~~a~~~~~~~ 236 (243)
|+++|+++|+|++|+++..+.+.
T Consensus 267 R~~vs~~~Kl~l~~~al~~~~~~ 289 (294)
T 4hd1_A 267 RPVVSGKQKLRIALSVLAGGAKG 289 (294)
T ss_dssp -----------------------
T ss_pred CCccCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999886544
No 2
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=100.00 E-value=2.7e-54 Score=376.79 Aligned_cols=227 Identities=27% Similarity=0.400 Sum_probs=216.2
Q ss_pred CCCCChhhhHHHHHHH-----------------HHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHhCCCCHH---
Q 036976 1 ALLMTEERRKAIWAIC-----------------VLDRWEERLQDIFYGR-------PYDMLDAALTDAVFKFPLDIK--- 53 (243)
Q Consensus 1 ~lllp~~~R~~~~aly-----------------~L~~w~~~l~~~~~g~-------~~~pv~~aL~~~i~~~~l~~~--- 53 (243)
++|+|+++|+++++|| .|+||++++++++.|. +.|||+.+|.+++++|+++.+
T Consensus 32 ~~~Lp~~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~~pv~~al~~~~~~~~l~~~~~~ 111 (293)
T 3acx_A 32 FDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSDRRIMMALQHVAQHKNIAFQSFY 111 (293)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 4789999999999999 4999999999999987 568999999999999999987
Q ss_pred -----hhccCCCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhhhCC
Q 036976 54 -----MRMDTRKFRYENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDASRG 128 (243)
Q Consensus 54 -----~~~Dl~~~~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~~~g 128 (243)
|++|+++.+|+|++||+.||++|||+||+|+++++|..+. +.+.+.|.++|.|+|+||||||+++|+.+|
T Consensus 112 ~li~g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~~-----~~~~~~A~~lG~AlQltNilRDv~eD~~~g 186 (293)
T 3acx_A 112 NLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHET-----HQTYDVARRLGESLQLINILRDVGEDFENE 186 (293)
T ss_dssp HHHHHHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSCC-----HHHHHHHHHHHHHHHHHHHHHCHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999997541 236789999999999999999999999999
Q ss_pred CcccCHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCccCChHHHHHHHHHHHHHHHHHHCCC
Q 036976 129 RVYLPQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEENDY 208 (243)
Q Consensus 129 R~YlP~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~~~~~~~~~~~~~~~~iL~~l~~~~~ 208 (243)
|||||.|+|++||+++++|.+++.++++++++.+++++|++||.+|+++++.+|+++++++.++..+|..+|++|+++||
T Consensus 187 R~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r~~~~~~~~~~~~iL~~i~~~~~ 266 (293)
T 3acx_A 187 RIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY 266 (293)
T ss_dssp CCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CCCCCCcccChHHHHHHHHHHHHhh
Q 036976 209 DNLTKRAYVGRMKKYLMLPQAYNRT 233 (243)
Q Consensus 209 ~~~~~r~~ls~~~k~~~~~~a~~~~ 233 (243)
+ |++|+++|+++|+|++|++++++
T Consensus 267 ~-~~~r~~v~~~~k~~~~~~a~~~~ 290 (293)
T 3acx_A 267 T-LHERVFVEKRKKAKLFHEINSKY 290 (293)
T ss_dssp C-SSSCCCCCHHHHHHHHHHHHHHC
T ss_pred C-CCCCceeCHHHHHHHHHHHHHhc
Confidence 9 99999999999999999998875
No 3
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=100.00 E-value=6.9e-43 Score=310.09 Aligned_cols=228 Identities=20% Similarity=0.149 Sum_probs=186.4
Q ss_pred CCCCChhhhHHHHHHH----------------------HHHHHHHHHHHH---HcCC-C-CCHHHHHHHHHHHhC-CCCH
Q 036976 1 ALLMTEERRKAIWAIC----------------------VLDRWEERLQDI---FYGR-P-YDMLDAALTDAVFKF-PLDI 52 (243)
Q Consensus 1 ~lllp~~~R~~~~aly----------------------~L~~w~~~l~~~---~~g~-~-~~pv~~aL~~~i~~~-~l~~ 52 (243)
++++|+++|+++++|| +|+||++.+... +.|. + .+++...+..++..| .++.
T Consensus 31 ~~lLp~~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~~~~~~~~ll~~~p~v~~~f~~l~~ 110 (343)
T 3vj8_A 31 IQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAE 110 (343)
T ss_dssp HHTCCTTHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCCCCSTTTHHHHTHHHHHHHHHHSCH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcCCChhhHHHHhcCcHHHHHHHHhHH
Confidence 3689999999999999 688888888642 3332 2 245544343333332 1221
Q ss_pred H---------------hhccCCCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCchhhhhHHHHHHHHHHHHHHHH
Q 036976 53 K---------------MRMDTRKFRYENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNF 117 (243)
Q Consensus 53 ~---------------~~~Dl~~~~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~~~~~~~~a~~lG~alql~ni 117 (243)
. |++|++ .+|+|++||+.||++|||+||+|+++++|..+......+...+.|.++|.|+|+|||
T Consensus 111 ~~~~~i~~~~~~m~~gm~~dl~-~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~~~~~~~~A~~lG~AlQltNi 189 (343)
T 3vj8_A 111 KYQTVIADICRRMGIGMAEFLD-KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNI 189 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGG-CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence 1 888997 799999999999999999999999999997532111112357899999999999999
Q ss_pred HHhhhhhhhCCCcccCHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCccC-ChHHHHHHHHH
Q 036976 118 LRDVGEDASRGRVYLPQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKDS-RWPVWSSLLIY 196 (243)
Q Consensus 118 lRDi~~D~~~gR~YlP~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~~~-~~~~~~~~~~~ 196 (243)
|||+++|+.+||||||.|+|.+||+++++|.+++.+++++.++.+++.+|+.||.+|..++..+|... .........++
T Consensus 190 lRDv~eD~~~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~~~~~~~~~ip~~lA 269 (343)
T 3vj8_A 190 IRDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMA 269 (343)
T ss_dssp HHTHHHHHHTTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHhCCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998862 22334556778
Q ss_pred HHHHHHHHHCCCCCCCCCcccChHHHHHHHHHHH
Q 036976 197 REILDAIEENDYDNLTKRAYVGRMKKYLMLPQAY 230 (243)
Q Consensus 197 ~~iL~~l~~~~~~~~~~r~~ls~~~k~~~~~~a~ 230 (243)
..+|++|.++ +++|++|+++|+++++|++|++.
T Consensus 270 ~~tL~~i~~~-~~v~~~rvkisr~~~~~l~~ra~ 302 (343)
T 3vj8_A 270 IATLAACYNN-QQVFKGAVKIRKGQAVTLMMDAT 302 (343)
T ss_dssp HHHHHHHTTC-GGGGTSCCCCCHHHHHHHHHHCS
T ss_pred HHHHHHHHhC-CccccCCCcccHHHHHHHHHHhC
Confidence 8999999775 79999999999999999999874
No 4
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=95.95 E-value=0.074 Score=46.04 Aligned_cols=109 Identities=17% Similarity=0.050 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCCC-C-CCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh-hCCCcccCHhhHHh
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGIA-P-DSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDA-SRGRVYLPQDKLAQ 139 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~-~-~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~-~~gR~YlP~~~l~~ 139 (243)
..|.+++..-.+.-.|++..+++.+-..- . .+....+.+..++.++|.|+|+.+=+-|+-.|. ..|+-
T Consensus 167 ~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~--------- 237 (317)
T 4f62_A 167 NISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKT--------- 237 (317)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------------
T ss_pred CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCC---------
Confidence 46888888888777788888777664331 1 121223457789999999999999888884432 11210
Q ss_pred CCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCc
Q 036976 140 FVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 183 (243)
Q Consensus 140 ~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~ 183 (243)
.-+|+.+|+.+-.+--.++.--+.|+++.++|.+.+..+|.
T Consensus 238 ---~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 278 (317)
T 4f62_A 238 ---QFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD 278 (317)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred ---cchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 12344444444444345666677888999999998888886
No 5
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=95.81 E-value=0.087 Score=45.74 Aligned_cols=110 Identities=17% Similarity=0.094 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCCC-C-CCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh-hCCCcccCHhhHHh
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGIA-P-DSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDA-SRGRVYLPQDKLAQ 139 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~-~-~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~-~~gR~YlP~~~l~~ 139 (243)
..|.+++..-.+.-.|++..+++.+-..- . .+....+.+..++.++|.|+|+.+=+-|+-.|. ..|+-
T Consensus 174 ~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~--------- 244 (324)
T 3ts7_A 174 KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKT--------- 244 (324)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----------------
T ss_pred CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCC---------
Confidence 56899998888888888888887765432 1 122223457789999999999999888874433 11210
Q ss_pred CCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 140 FVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 140 ~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
.-+|+.+|+.+-.+--.++.--+.++++.++|.+.+..+|..
T Consensus 245 ---~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 286 (324)
T 3ts7_A 245 ---RGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGPE 286 (324)
T ss_dssp -----------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred ---ccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 112333444333333345666688899999999999989875
No 6
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=95.67 E-value=0.14 Score=44.64 Aligned_cols=122 Identities=9% Similarity=-0.009 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhh----------hhhhhCCCcc
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDV----------GEDASRGRVY 131 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi----------~~D~~~gR~Y 131 (243)
-.|.+++..-++.-.|++..+++++... ...+....+.+..++.++|.|+|+.+=+-|+ +.|+..|.+-
T Consensus 160 ~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~GK~~g~Dl~egK~T 239 (334)
T 3rmg_A 160 SFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLT 239 (334)
T ss_dssp -CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC------CCHHHHTTCCC
T ss_pred CCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhcCCCchhhhhcCchH
Confidence 4688998888888888888887766432 1111122345778999999999999988886 4788899998
Q ss_pred cCHhhHHhCCCCh--Hhhh----hccCCHH-HHH---------HHHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 132 LPQDKLAQFVLCD--KDVF----ARKVTDN-WRE---------FMKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 132 lP~~~l~~~gv~~--~~l~----~~~~~~~-~~~---------l~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
+|.=..-+..-.. +.|. ++..++. +.. .++.--+.++.+.++|.+.+..+|..
T Consensus 240 ~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~ 308 (334)
T 3rmg_A 240 LPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDS 308 (334)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8876543332111 1111 1222222 222 12333456778888888888888754
No 7
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=95.66 E-value=0.053 Score=47.76 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhh-----------hhhhhCCCc
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDV-----------GEDASRGRV 130 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi-----------~~D~~~gR~ 130 (243)
..|.+++..-++.-.|++..+++++... ...+....+.+..++.++|.|+|+.|=+-|+ +.|+..|.+
T Consensus 171 ~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~ 250 (358)
T 4dhd_A 171 EVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKR 250 (358)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBS
T ss_pred CCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCCh
Confidence 4588999888888888888887766532 1111122345678999999999999877776 578889999
Q ss_pred -ccCHhhHHhCCCChH---hh---h-hccCC-HHHHHHH---------HHHHHHHHHHHHHHHHchhhcCcc
Q 036976 131 -YLPQDKLAQFVLCDK---DV---F-ARKVT-DNWREFM---------KEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 131 -YlP~~~l~~~gv~~~---~l---~-~~~~~-~~~~~l~---------~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
-+|.=..-+.. +++ .| + ++..+ +.+..++ ..--+.++.+.++|.+.+..+|..
T Consensus 251 ~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~ 321 (358)
T 4dhd_A 251 GNAVVAVALSHL-GEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNN 321 (358)
T ss_dssp CSHHHHHHHHHS-CHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred hhHHHHHHHHhC-ChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88865443332 222 11 1 11112 2222222 223567889999999999889854
No 8
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=95.60 E-value=0.11 Score=45.84 Aligned_cols=120 Identities=12% Similarity=0.114 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhh-----------hhhhhCCCcc
Q 036976 64 ENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDV-----------GEDASRGRVY 131 (243)
Q Consensus 64 ~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi-----------~~D~~~gR~Y 131 (243)
.|++++..-++.-.|++..+++++... ...+....+.+..++.++|.|+|+.|=+-|+ +.|+..|.+-
T Consensus 187 ~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T 266 (360)
T 3lmd_A 187 DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFT 266 (360)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCC
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCch
Confidence 778888877788888888887766432 1112122345778999999999999988777 4688889999
Q ss_pred cCHhhHHhCCCCh--Hhh---hhc-cCCH-HHHHH---------HHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 132 LPQDKLAQFVLCD--KDV---FAR-KVTD-NWREF---------MKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 132 lP~~~l~~~gv~~--~~l---~~~-~~~~-~~~~l---------~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
+|.=..-+.+ ++ +.| +.+ ..++ .+..+ +..--+.++.+.++|.+.+..+|..
T Consensus 267 lp~l~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~ 334 (360)
T 3lmd_A 267 LPVLYALRED-TPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDS 334 (360)
T ss_dssp HHHHHHHHCC-SHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHcC-CchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9877654442 22 122 111 1222 22222 2334456788888888888888764
No 9
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=95.55 E-value=0.13 Score=44.21 Aligned_cols=111 Identities=16% Similarity=0.096 Sum_probs=70.5
Q ss_pred CCCCHHHHHHHHHHhhhHHHHHHHhhhCCCCC--CCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh-hCCCcccCHhhHH
Q 036976 62 RYENLQELYLYCYYVAGTVGLMSVPVMGIAPD--SSSSAQSIYNGALNLGVGNQLTNFLRDVGEDA-SRGRVYLPQDKLA 138 (243)
Q Consensus 62 ~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~--~~~~~~~~~~~a~~lG~alql~nilRDi~~D~-~~gR~YlP~~~l~ 138 (243)
...|.+++..-++.-.|++..+++.+-..-.+ +....+.+..++.++|.|+|+.|=+-|+-.|. ..|+-
T Consensus 173 ~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~-------- 244 (302)
T 3p8r_A 173 RLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKP-------- 244 (302)
T ss_dssp SCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred CCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCC--------
Confidence 35688888888877778888877766432111 11122457789999999999999888875443 12210
Q ss_pred hCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 139 QFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 139 ~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
.-+|+.+|+.+-.+--.++.--+.|+.+.++|.+.+..+|..
T Consensus 245 ----~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 286 (302)
T 3p8r_A 245 ----QGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN 286 (302)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred ----cchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 123555555555544456777788999999999999989875
No 10
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=95.52 E-value=0.099 Score=44.96 Aligned_cols=109 Identities=17% Similarity=0.070 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCC-CCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh-hCCCcccCHhhHHh
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGI-APD-SSSSAQSIYNGALNLGVGNQLTNFLRDVGEDA-SRGRVYLPQDKLAQ 139 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~-~~~~~~~~~~~a~~lG~alql~nilRDi~~D~-~~gR~YlP~~~l~~ 139 (243)
..|.+++..-++.-.|++..+++.+-.. ... +....+.+..++.++|.|+|+.|=+-|+-.|. ..|+-
T Consensus 168 ~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~--------- 238 (304)
T 3lsn_A 168 KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKR--------- 238 (304)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCC---------
Confidence 3688998888888888888887766432 111 21223457789999999999999888885543 22321
Q ss_pred CCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCc
Q 036976 140 FVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 183 (243)
Q Consensus 140 ~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~ 183 (243)
.-+|+.+|+.+-.+--.++.--+.++++.++|.+.+..+|.
T Consensus 239 ---~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 279 (304)
T 3lsn_A 239 ---QGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDA 279 (304)
T ss_dssp ------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCG
T ss_pred ---cccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 12344444444444445666678888999999999988887
No 11
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=95.46 E-value=0.87 Score=39.66 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=80.5
Q ss_pred hhccCCCCC--CCCHHHHHHHHHHhhhHHHHHHHhhhCCC-CCCCchhhhhHHHHHHHHHHHHHHHHHHhh---------
Q 036976 54 MRMDTRKFR--YENLQELYLYCYYVAGTVGLMSVPVMGIA-PDSSSSAQSIYNGALNLGVGNQLTNFLRDV--------- 121 (243)
Q Consensus 54 ~~~Dl~~~~--~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~-~~~~~~~~~~~~~a~~lG~alql~nilRDi--------- 121 (243)
..+|+.... -.|++++..-++.-.|++..+++.+...- ..+....+.+..++.++|.|+|+.+=+-|+
T Consensus 169 Q~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK 248 (348)
T 3apz_A 169 ETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGK 248 (348)
T ss_dssp HHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTC
T ss_pred HHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCC
Confidence 445665432 35777777777777777777777664321 111122234678999999999999988886
Q ss_pred --hhhhhCCCcccCHhhHHhCCCChHhhhhcc--CCHHHHHH---------HHHHHHHHHHHHHHHHHchhhcCccC
Q 036976 122 --GEDASRGRVYLPQDKLAQFVLCDKDVFARK--VTDNWREF---------MKEQIKRARTFFNMAEEGASQLDKDS 185 (243)
Q Consensus 122 --~~D~~~gR~YlP~~~l~~~gv~~~~l~~~~--~~~~~~~l---------~~~~~~~A~~~~~~a~~~~~~lp~~~ 185 (243)
+.|+..|.+-+|.=..-+..-....++... ....+..+ +..--+.++.+.++|.+.+..+|...
T Consensus 249 ~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~ 325 (348)
T 3apz_A 249 GSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETD 325 (348)
T ss_dssp SCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred cchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 367888999888765333221222222221 12222222 23334567888888888888888653
No 12
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=95.38 E-value=0.14 Score=44.45 Aligned_cols=110 Identities=19% Similarity=0.086 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh-hCCCcccCHhhHHhC
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDA-SRGRVYLPQDKLAQF 140 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~-~~gR~YlP~~~l~~~ 140 (243)
-.|.+++..-.+.-.|++..+++.+-.. ...+....+.+..++.++|.|+|+.+=+-|+-.|. ..|+-
T Consensus 197 ~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~---------- 266 (324)
T 3uca_A 197 EISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKN---------- 266 (324)
T ss_dssp SCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------
T ss_pred CCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCC----------
Confidence 5688888887777777788877766432 11121223457789999999999999888874332 11110
Q ss_pred CCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 141 VLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 141 gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
.-+|+.+|+.+-.+--.++.--+.++++.++|.+.+..+|..
T Consensus 267 --~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~ 308 (324)
T 3uca_A 267 --VHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKGN 308 (324)
T ss_dssp ------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred --cchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 112333333333333345556677888888888888888864
No 13
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=95.37 E-value=0.12 Score=44.61 Aligned_cols=109 Identities=12% Similarity=0.026 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCCC-C--CCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh-hCCCcccCHhhHH
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGIA-P--DSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDA-SRGRVYLPQDKLA 138 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~-~--~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~-~~gR~YlP~~~l~ 138 (243)
..|.+++..-.+.-.|++..+++.+ ..- . .+....+.+..++.++|.|+|+.|=+-|+-.|. ..|+-
T Consensus 175 ~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~-------- 245 (313)
T 3lom_A 175 SVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKG-------- 245 (313)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCC--------
Confidence 5688999888888888888887777 432 2 122223457789999999999999888874432 11210
Q ss_pred hCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 139 QFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 139 ~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
.-+|+.+|+.+-.+--.++.--+.++++.++|.+.+..+|..
T Consensus 246 ----~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 287 (313)
T 3lom_A 246 ----RSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSK 287 (313)
T ss_dssp ------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGG
T ss_pred ----CcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 112333333333333345566678888999999998888875
No 14
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=95.33 E-value=0.16 Score=44.30 Aligned_cols=122 Identities=14% Similarity=0.141 Sum_probs=79.8
Q ss_pred CCCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhh-----------hhhhhCCC
Q 036976 62 RYENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDV-----------GEDASRGR 129 (243)
Q Consensus 62 ~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi-----------~~D~~~gR 129 (243)
.-.|++++..-++.-.|++..+++++... ...+....+.+..++.++|.|+|+.+=+-|+ +.|+..|.
T Consensus 165 ~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK 244 (341)
T 3mzv_A 165 LATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERK 244 (341)
T ss_dssp TTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTC
T ss_pred CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCc
Confidence 45688998888888888888887766532 1112122345778999999999999988776 57889999
Q ss_pred cccCHhhHHhCCCChHh------hhh-c-cCCHHHHHH---------HHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 130 VYLPQDKLAQFVLCDKD------VFA-R-KVTDNWREF---------MKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 130 ~YlP~~~l~~~gv~~~~------l~~-~-~~~~~~~~l---------~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
+-+|.=..-+.. ++++ ++. + ...+.+..+ +..--+.++.+.++|.+.+..+|..
T Consensus 245 ~Tlp~i~al~~~-~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~ 315 (341)
T 3mzv_A 245 LTMPVIKAVALA-DEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDH 315 (341)
T ss_dssp CCHHHHHHHHTC-CHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred hhHHHHHHHHhC-CHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999876554432 2221 111 1 122333333 2334456788888888888888864
No 15
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=95.23 E-value=0.17 Score=43.41 Aligned_cols=110 Identities=16% Similarity=0.070 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh-hCCCcccCHhhHHhC
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDA-SRGRVYLPQDKLAQF 140 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~-~~gR~YlP~~~l~~~ 140 (243)
..|++++..-++.-.|++..+++.+-.. ...+....+.+..++.++|.|+|+.+=+-|+-.|. ..|+-
T Consensus 164 ~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~---------- 233 (301)
T 1rtr_A 164 PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKK---------- 233 (301)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------
T ss_pred CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCC----------
Confidence 5689999988888888888887766432 11121223457789999999999999888886554 22221
Q ss_pred CCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 141 VLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 141 gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
.-+|+.+++.+-.+--.++.--+.++++.++|.+.+..+|..
T Consensus 234 --~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~ 275 (301)
T 1rtr_A 234 --VGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQ 275 (301)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred --cchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 113444444444444445666778888999999888888854
No 16
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=95.20 E-value=0.22 Score=43.33 Aligned_cols=121 Identities=15% Similarity=0.031 Sum_probs=76.7
Q ss_pred CCCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhh-----------hhhhhCCC
Q 036976 62 RYENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDV-----------GEDASRGR 129 (243)
Q Consensus 62 ~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi-----------~~D~~~gR 129 (243)
.-.|.+++..-++.-.|++..+++.+-.. ...+....+.+..++.++|.|+|+.+=+-|+ +.|+..|.
T Consensus 169 ~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK 248 (334)
T 3pko_A 169 EDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGV 248 (334)
T ss_dssp TTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCc
Confidence 45678887777777777888777766432 1112122345678999999999999877775 57899999
Q ss_pred cccCHhhHHhCCCChHhh---h--hccCCHH-HHHHH---------HHHHHHHHHHHHHHHHchhhcCcc
Q 036976 130 VYLPQDKLAQFVLCDKDV---F--ARKVTDN-WREFM---------KEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 130 ~YlP~~~l~~~gv~~~~l---~--~~~~~~~-~~~l~---------~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
+-+|.=..-+.. ++.+ + ++..++. +..++ ..--+.++.+.++|.+.+..+|..
T Consensus 249 ~Tlp~i~al~~~--~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~ 316 (334)
T 3pko_A 249 YSLPLLLSLSHA--PRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVG 316 (334)
T ss_dssp CCHHHHHHGGGS--HHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred hhHHHHHHHHhC--cHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 998876544332 1222 1 1112222 22221 233456788888888888888864
No 17
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=95.18 E-value=0.16 Score=44.63 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=78.1
Q ss_pred CCCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhh-----------hhhhhCCC
Q 036976 62 RYENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDV-----------GEDASRGR 129 (243)
Q Consensus 62 ~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi-----------~~D~~~gR 129 (243)
.-.|.+++..=++.-.|++..+++++-.. ...+....+.+..++.++|.|+|+.+=+-|+ +.|+..|.
T Consensus 169 ~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK 248 (352)
T 3nf2_A 169 DRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRK 248 (352)
T ss_dssp SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTC
T ss_pred CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcCcccccCC
Confidence 35689998888888888888887766432 1112122345778999999999999988776 57888999
Q ss_pred cccCHhhHHhCCCChH--hh---hhc--------cCC-HHHHHH---------HHHHHHHHHHHHHHHHHchhhcCc
Q 036976 130 VYLPQDKLAQFVLCDK--DV---FAR--------KVT-DNWREF---------MKEQIKRARTFFNMAEEGASQLDK 183 (243)
Q Consensus 130 ~YlP~~~l~~~gv~~~--~l---~~~--------~~~-~~~~~l---------~~~~~~~A~~~~~~a~~~~~~lp~ 183 (243)
+-+|.=..-+.+ +++ .| +.. ..+ +.+..+ +..--+.++.+.++|.+.+..+|+
T Consensus 249 ~Tlpvi~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~~lp~ 324 (352)
T 3nf2_A 249 KSLPVVAALAAG-GAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDM 324 (352)
T ss_dssp CCHHHHHHHHHC-SHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccHHHHHHHHhC-ChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 988876544432 221 22 211 112 222222 233334578888888888888876
No 18
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=94.88 E-value=0.15 Score=44.35 Aligned_cols=109 Identities=17% Similarity=0.043 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhhh-CCCcccCHhhHHhC
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDAS-RGRVYLPQDKLAQF 140 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~~-~gR~YlP~~~l~~~ 140 (243)
..|++++..-.+.-.|++..+++++-.. ...+....+.+.+++.++|.|+|+.|=+-|+-.|.. .|. |
T Consensus 208 ~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK---~------- 277 (335)
T 2h8o_A 208 APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGK---A------- 277 (335)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCC---C-------
Confidence 4688899888888888888877766432 111112234577899999999999998888744321 121 0
Q ss_pred CCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCc
Q 036976 141 VLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 183 (243)
Q Consensus 141 gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~ 183 (243)
.-+|+.+|+.+-.+.-.++.--+.++.+.++|.+.+..+|.
T Consensus 278 --~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~ 318 (335)
T 2h8o_A 278 --TGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE 318 (335)
T ss_dssp ----------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred --cchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 01233333333333333556667788888888888888875
No 19
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=94.84 E-value=0.14 Score=43.99 Aligned_cols=109 Identities=14% Similarity=0.033 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh-hCCCcccCHhhHHhC
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDA-SRGRVYLPQDKLAQF 140 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~-~~gR~YlP~~~l~~~ 140 (243)
..|.+++..-.+.-.|++..+++.+-.. ...+....+.+..++.++|.|+|+.+=+-|+-.|. ..|+-
T Consensus 172 ~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~---------- 241 (302)
T 3p8l_A 172 SLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKK---------- 241 (302)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------------------
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCC----------
Confidence 4688888887777777788887766432 11121223457789999999999999888884443 11211
Q ss_pred CCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCc
Q 036976 141 VLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 183 (243)
Q Consensus 141 gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~ 183 (243)
.-+|+.+|+.+-.+--.++.--+.++++.++|.+.+..+|.
T Consensus 242 --~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~ 282 (302)
T 3p8l_A 242 --VGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIKA 282 (302)
T ss_dssp -----------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 12344444444444444555567777788888877777753
No 20
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=94.58 E-value=0.59 Score=40.83 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhh-----------hhhhhCCC
Q 036976 62 RYENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDV-----------GEDASRGR 129 (243)
Q Consensus 62 ~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi-----------~~D~~~gR 129 (243)
.-.|.+++..-++.-.|++..+++++-.. ...+....+.+..++.++|.|+|+.+=+-|+ +.|+..|.
T Consensus 177 ~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK 256 (345)
T 3oyr_A 177 LNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGK 256 (345)
T ss_dssp SSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCc
Confidence 35788999888888888888888776432 1111122345778999999999999988775 57888999
Q ss_pred cccCHhhHHhCCCChH-hhh----h-cc-CCHH---HHHH------HHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 130 VYLPQDKLAQFVLCDK-DVF----A-RK-VTDN---WREF------MKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 130 ~YlP~~~l~~~gv~~~-~l~----~-~~-~~~~---~~~l------~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
+-+|.=..-+.+-..+ .++ . +. ..+. +.++ +..--+.++.+.++|.+.+..+|..
T Consensus 257 ~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~ 327 (345)
T 3oyr_A 257 ATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPAN 327 (345)
T ss_dssp CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSS
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9888765544331111 111 1 11 1112 2222 2444567889999999999888864
No 21
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=94.38 E-value=0.29 Score=42.33 Aligned_cols=122 Identities=13% Similarity=0.058 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCCC-CCCCchhhhhHHHHHHHHHHHHHHHHHHhh-----------hhhhhCCCc
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGIA-PDSSSSAQSIYNGALNLGVGNQLTNFLRDV-----------GEDASRGRV 130 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~-~~~~~~~~~~~~~a~~lG~alql~nilRDi-----------~~D~~~gR~ 130 (243)
-.|++++..-++.-.|++..+++++-..- ..+....+.+.+++.++|.|+|+.|=+-|+ +.|+..|.+
T Consensus 157 ~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~ 236 (325)
T 3aqb_B 157 PVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHI 236 (325)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCC
T ss_pred CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCc
Confidence 46889988888888888888887775431 122122345778999999999999887775 578889999
Q ss_pred ccCHhhHHhCC-CC-hHhhh------h-ccCCHHHHH---HH-----HHHHHHHHHHHHHHHHchhhcCcc
Q 036976 131 YLPQDKLAQFV-LC-DKDVF------A-RKVTDNWRE---FM-----KEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 131 YlP~~~l~~~g-v~-~~~l~------~-~~~~~~~~~---l~-----~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
-+|.=..-+.. -. .+.+. . +...+.+.. ++ ...-+.++.+.++|.+.+..+|..
T Consensus 237 T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~~~L~~lp~~ 307 (325)
T 3aqb_B 237 TYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHLSQLQDS 307 (325)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88875432211 00 01111 1 111122222 22 222355778888888888888765
No 22
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=94.27 E-value=0.45 Score=41.00 Aligned_cols=120 Identities=18% Similarity=0.109 Sum_probs=79.1
Q ss_pred CCCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhh-----------hhhhhCCCc
Q 036976 62 RYENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNFLRDV-----------GEDASRGRV 130 (243)
Q Consensus 62 ~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~~~~~~~~a~~lG~alql~nilRDi-----------~~D~~~gR~ 130 (243)
.-.|.+++..-++.-.|++..+++.+...-.+.. .+.+..++.++|.|+|+.+=+-|+ +.|+..|.+
T Consensus 148 ~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~ 225 (315)
T 3tc1_A 148 FNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKT 225 (315)
T ss_dssp CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCC
T ss_pred CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCCh
Confidence 3568888887778888888888776643311111 345789999999999999988886 678889999
Q ss_pred ccCHhhHHhCCCChH---hhh---hccCCHHHHHH---------HHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 131 YLPQDKLAQFVLCDK---DVF---ARKVTDNWREF---------MKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 131 YlP~~~l~~~gv~~~---~l~---~~~~~~~~~~l---------~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
-+|.=..-+.. +++ .|. .....+.+..+ +..-.+.++.+.++|.+.+..+|..
T Consensus 226 T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s 293 (315)
T 3tc1_A 226 TLPYLLLYEKL-NQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNL 293 (315)
T ss_dssp CHHHHHHHTTS-CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCH
T ss_pred hHHHHHHHHhC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99976554432 332 122 22222222222 2333345788888888888888764
No 23
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=94.19 E-value=0.34 Score=41.36 Aligned_cols=117 Identities=13% Similarity=0.089 Sum_probs=70.0
Q ss_pred hhccCCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhhhh-----hhh
Q 036976 54 MRMDTRKF-RYENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDVGE-----DAS 126 (243)
Q Consensus 54 ~~~Dl~~~-~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi~~-----D~~ 126 (243)
...|+... ...|.+++..-.+.-.|++..+++.+-.. ...+....+.+..++.++|.|+|+.|=+-|+-. |..
T Consensus 143 Q~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~ 222 (295)
T 3ipi_A 143 EVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVEGKESK 222 (295)
T ss_dssp HHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred chHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 34455432 22567777777778888888877766432 111212234577899999999999998888744 455
Q ss_pred CCCcccCHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 127 RGRVYLPQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 127 ~gR~YlP~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
.|.+-+|.=...+.+ + ...++.--+.|+.+.++|.+.+..+|..
T Consensus 223 ~gk~Tlp~l~al~~~------------~--~~~le~a~~~a~~~~~~A~~~L~~lp~~ 266 (295)
T 3ipi_A 223 FTSETLPHIYMKSTS------------K--EEALKKSIDCVKLHVAAAKETLETFREC 266 (295)
T ss_dssp ---CCHHHHHTTTSC------------H--HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred cCcccHHHHHHHhcC------------c--hhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 566666654322221 1 1236666788899999999999888864
No 24
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=94.15 E-value=0.51 Score=40.38 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhh-----------hhhhhCCCcc
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNFLRDV-----------GEDASRGRVY 131 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~~~~~~~~a~~lG~alql~nilRDi-----------~~D~~~gR~Y 131 (243)
..|++++..-++.-.|++..+++.+...-.+.. +.+..++.++|.|+|+.+=+-|+ +.|+..|.+-
T Consensus 139 ~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~---~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T 215 (301)
T 2q80_A 139 CPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYK---EDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFS 215 (301)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC---SCCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCC
T ss_pred CCCHHHHHHHHHcccHHHHHHHHHHHHHHCCCh---HHHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcH
Confidence 568899888888888888888777653311111 13678999999999999888776 4788889998
Q ss_pred cCHhhHHhCCCChHhh---h-hccCCHHHHH-H---------HHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 132 LPQDKLAQFVLCDKDV---F-ARKVTDNWRE-F---------MKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 132 lP~~~l~~~gv~~~~l---~-~~~~~~~~~~-l---------~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
+|.=..-+.+-....+ . .+..++.+.. + +..--+.++.+.++|.+.+..+|..
T Consensus 216 ~p~i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~ 282 (301)
T 2q80_A 216 FPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGN 282 (301)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8886544432111112 2 2222334333 2 1233456778888888888777754
No 25
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=94.10 E-value=0.71 Score=39.30 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=66.9
Q ss_pred hhccCCCCC----CCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhhhCC
Q 036976 54 MRMDTRKFR----YENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDASRG 128 (243)
Q Consensus 54 ~~~Dl~~~~----~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~~~g 128 (243)
...|+.... -.|++++..-++.-.|++..+++.+-.. ...+....+.+..++.++|.|+|+.+=+-|+-.|.
T Consensus 166 Q~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~--- 242 (293)
T 2j1p_A 166 QVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS--- 242 (293)
T ss_dssp HHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc---
Confidence 455665432 2345566655666677777777665432 11122223457789999999999999998987665
Q ss_pred CcccCHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCccCChH
Q 036976 129 RVYLPQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKDSRWP 188 (243)
Q Consensus 129 R~YlP~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~~~~~~ 188 (243)
..-+|. --.++.--+.++.+.++|.+.+..+|...+..
T Consensus 243 K~T~p~----------------------l~gle~a~~~a~~~~~~A~~~L~~l~~~~~~~ 280 (293)
T 2j1p_A 243 KLTYPK----------------------LMGLEKSREFAEKLNTEARDQLLGFDSDKVAP 280 (293)
T ss_dssp CCCHHH----------------------HHHHHHHHHHHHHHHHHHHHHTTTSCTTTTHH
T ss_pred cccHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 222331 11345556678888889988888887444433
No 26
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=93.98 E-value=0.64 Score=41.00 Aligned_cols=121 Identities=9% Similarity=-0.014 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHhhhHH-HHHHHhhhCC-CC-CCCchhhhhHHHHHHHHHHHHHHHHHHhh----------hhhhhCCCc
Q 036976 64 ENLQELYLYCYYVAGTV-GLMSVPVMGI-AP-DSSSSAQSIYNGALNLGVGNQLTNFLRDV----------GEDASRGRV 130 (243)
Q Consensus 64 ~t~~dL~~Y~~~~Ag~v-g~l~~~l~g~-~~-~~~~~~~~~~~~a~~lG~alql~nilRDi----------~~D~~~gR~ 130 (243)
.|++++..-++.-.|+. ..+++.+-.. .. .+....+.+..++.++|.|+|+.+=+-|+ +.|+..|.+
T Consensus 209 ~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~ 288 (374)
T 2qis_A 209 FTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKC 288 (374)
T ss_dssp CCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCC
T ss_pred CCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCCchhHHHcCCc
Confidence 58899988888888888 6666554321 11 11122345778999999999999988887 357888999
Q ss_pred ccCHhhHHhCCCChH--h-hhhc--cCCH-HHHH---HHH------HHHHHHHHHHHHHHHchhhcCccC
Q 036976 131 YLPQDKLAQFVLCDK--D-VFAR--KVTD-NWRE---FMK------EQIKRARTFFNMAEEGASQLDKDS 185 (243)
Q Consensus 131 YlP~~~l~~~gv~~~--~-l~~~--~~~~-~~~~---l~~------~~~~~A~~~~~~a~~~~~~lp~~~ 185 (243)
-+|.=..-+.. +++ + |.+. ..++ .+.. ++. .....++.++++|.+.+..+|...
T Consensus 289 T~p~l~al~~a-~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~ 357 (374)
T 2qis_A 289 SWLVVQCLQRA-TPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPL 357 (374)
T ss_dssp CHHHHHHHHHC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred cHHHHHHHHhC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 88875432221 222 1 2111 1112 2222 222 113346777888888777777654
No 27
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=93.87 E-value=0.48 Score=41.74 Aligned_cols=122 Identities=11% Similarity=-0.021 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHhhhHH-HHHHHhhhCC-CC-CCCchhhhhHHHHHHHHHHHHHHHHHHhhh----------hhhhCCC
Q 036976 63 YENLQELYLYCYYVAGTV-GLMSVPVMGI-AP-DSSSSAQSIYNGALNLGVGNQLTNFLRDVG----------EDASRGR 129 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~v-g~l~~~l~g~-~~-~~~~~~~~~~~~a~~lG~alql~nilRDi~----------~D~~~gR 129 (243)
-.|++++..=++.-.|+. ..+++.+-.. .. .+....+.+..++.++|.|+|+.+=+-|+- .|+..|.
T Consensus 201 ~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK 280 (367)
T 1uby_A 201 HFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNK 280 (367)
T ss_dssp TCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCCCCCSSSCC
T ss_pred cCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCchhhHHcCC
Confidence 358888887777777776 5555544321 01 111223457789999999999999888874 5788899
Q ss_pred cccCHhhHHhCCCChHh---hhh---ccCCHHHHHHHHH---------HHHHHHHHHHHHHHchhhcCccC
Q 036976 130 VYLPQDKLAQFVLCDKD---VFA---RKVTDNWREFMKE---------QIKRARTFFNMAEEGASQLDKDS 185 (243)
Q Consensus 130 ~YlP~~~l~~~gv~~~~---l~~---~~~~~~~~~l~~~---------~~~~A~~~~~~a~~~~~~lp~~~ 185 (243)
+-+|.=..-+.. ++++ |.+ ......+..+.+. .-..++.++++|.+.+..+|...
T Consensus 281 ~T~p~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~ 350 (367)
T 1uby_A 281 CSWLVVQCLQRV-TPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRL 350 (367)
T ss_dssp CCHHHHHHHHHC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred chHHHHHHHHhC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 988875433221 3322 211 1111222222111 11347777888887777777543
No 28
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=93.78 E-value=0.72 Score=40.44 Aligned_cols=121 Identities=12% Similarity=-0.066 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHhhhHH-HHHHHhhhCC-CC-CCCchhhhhHHHHHHHHHHHHHHHHHHhhh----------hhhhCCCc
Q 036976 64 ENLQELYLYCYYVAGTV-GLMSVPVMGI-AP-DSSSSAQSIYNGALNLGVGNQLTNFLRDVG----------EDASRGRV 130 (243)
Q Consensus 64 ~t~~dL~~Y~~~~Ag~v-g~l~~~l~g~-~~-~~~~~~~~~~~~a~~lG~alql~nilRDi~----------~D~~~gR~ 130 (243)
.|++++..=++.-.|+. ..+++.+-.. .. .+....+.+..++.++|.|+|+.+=+-|+- .|+..|.+
T Consensus 195 ~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~ 274 (362)
T 1yhl_A 195 FTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKC 274 (362)
T ss_dssp CSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCC
T ss_pred CCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCc
Confidence 58888888888878877 6666655321 11 111123457789999999999999888873 67888999
Q ss_pred ccCHhhHHhCCCChHh---hhh---ccCCHHHHH---HHH------HHHHHHHHHHHHHHHchhhcCccC
Q 036976 131 YLPQDKLAQFVLCDKD---VFA---RKVTDNWRE---FMK------EQIKRARTFFNMAEEGASQLDKDS 185 (243)
Q Consensus 131 YlP~~~l~~~gv~~~~---l~~---~~~~~~~~~---l~~------~~~~~A~~~~~~a~~~~~~lp~~~ 185 (243)
-+|.=..-+.. ++++ |.+ ......+.. ++. ...+.++.++++|.+.+..+|...
T Consensus 275 T~p~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~ 343 (362)
T 1yhl_A 275 SWLAVTFLGKA-NAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKS 343 (362)
T ss_dssp CHHHHHHHTTC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHhC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 88875443332 3322 221 111122222 221 222456777777777777777653
No 29
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=93.58 E-value=1.1 Score=39.35 Aligned_cols=146 Identities=15% Similarity=0.118 Sum_probs=83.3
Q ss_pred hhccCCCCC---CCCH-HHHHHHHHHhhhHH-HHHHHhh----hCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhh---
Q 036976 54 MRMDTRKFR---YENL-QELYLYCYYVAGTV-GLMSVPV----MGIAPDSSSSAQSIYNGALNLGVGNQLTNFLRDV--- 121 (243)
Q Consensus 54 ~~~Dl~~~~---~~t~-~dL~~Y~~~~Ag~v-g~l~~~l----~g~~~~~~~~~~~~~~~a~~lG~alql~nilRDi--- 121 (243)
...|+.... -.+. +++..=++.-.|+. ..+++.+ .|.+++.. ..+.+..++.++|.|+|+.+=+-|+
T Consensus 184 Q~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~-~~~~l~~~g~~lG~aFQI~DD~LD~~~~ 262 (368)
T 2her_A 184 QHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSA-QLNLIEAILYKLGEFYQVHNDVSDYLFN 262 (368)
T ss_dssp HHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCS-STTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445665433 2344 55554455555555 4444433 23332210 0234779999999999999988887
Q ss_pred ---hhhhhCCCcccCHhhHHhCCCChHh---hhhc--cCCHHHHHHHH------HHHHHHHHHHHHHHHchhhcCccCCh
Q 036976 122 ---GEDASRGRVYLPQDKLAQFVLCDKD---VFAR--KVTDNWREFMK------EQIKRARTFFNMAEEGASQLDKDSRW 187 (243)
Q Consensus 122 ---~~D~~~gR~YlP~~~l~~~gv~~~~---l~~~--~~~~~~~~l~~------~~~~~A~~~~~~a~~~~~~lp~~~~~ 187 (243)
+.|+..|.+-+|.=..-+. .++++ |... ..+..++++++ ...+.++.++++|.+.+..+|.....
T Consensus 263 GK~g~Dl~egK~T~pvi~al~~-a~~~~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k 341 (368)
T 2her_A 263 DSNADDICRFKLTWPLQKSFEI-ADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQ 341 (368)
T ss_dssp CSSSCTTTTTCCCHHHHSSTTT-CCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CCCCChHhCCcccHHHHHHHHh-CCHHHHHHHHHHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcHHH
Confidence 5899999998887543322 23332 2111 11144554433 33456788999999999999885222
Q ss_pred HHHHHHHHHHHHHHHH
Q 036976 188 PVWSSLLIYREILDAI 203 (243)
Q Consensus 188 ~~~~~~~~~~~iL~~l 203 (243)
.+...+...+.+.|
T Consensus 342 --~~L~~l~~~i~~~~ 355 (368)
T 2her_A 342 --KVFIHLIHQISELI 355 (368)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHh
Confidence 22333444444444
No 30
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=93.58 E-value=0.31 Score=42.45 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhh-----------hhhhhCCCc
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDV-----------GEDASRGRV 130 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi-----------~~D~~~gR~ 130 (243)
-.|++++..-++.-.|++..+++.+-.. ...+....+.+..++.++|.|+|+.|=+-|+ +.|+..|.+
T Consensus 164 ~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~ 243 (342)
T 1wy0_A 164 TVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKK 243 (342)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCC
T ss_pred CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCC
Confidence 3488998888888888888887776432 1111122345778999999999999988776 478888999
Q ss_pred ccCHhhHHhCCCChHh---hhh---ccC-------------CHHHHHH---H------HHHHHHHHHHHHHHHHchhhcC
Q 036976 131 YLPQDKLAQFVLCDKD---VFA---RKV-------------TDNWREF---M------KEQIKRARTFFNMAEEGASQLD 182 (243)
Q Consensus 131 YlP~~~l~~~gv~~~~---l~~---~~~-------------~~~~~~l---~------~~~~~~A~~~~~~a~~~~~~lp 182 (243)
-+|.=..-+.. ++++ +.+ ... ...+..+ + ..--+.++.+.++|.+.+..+|
T Consensus 244 Tlp~i~al~~~-~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~ 322 (342)
T 1wy0_A 244 TLIVAHFFENA-DEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILP 322 (342)
T ss_dssp CHHHHHHHHHC-CHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSC
T ss_pred cHHHHHHHHhC-CHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88876543322 2221 111 110 1122222 1 2334567888888888888887
Q ss_pred cc
Q 036976 183 KD 184 (243)
Q Consensus 183 ~~ 184 (243)
..
T Consensus 323 ~~ 324 (342)
T 1wy0_A 323 KS 324 (342)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 31
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=93.56 E-value=0.35 Score=42.10 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhh-----------hhhhhCCCc
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDV-----------GEDASRGRV 130 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi-----------~~D~~~gR~ 130 (243)
..|++++..-++.-.|++..+++.+... ...+. ..+.+..++.++|.|+|+.+=+-|+ +.|+..|.+
T Consensus 161 ~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~ 239 (340)
T 2e8v_A 161 IPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKL 239 (340)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCC
T ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCc
Confidence 4689999888888888888887776532 11111 1235678999999999999988886 478888999
Q ss_pred ccCHhhH
Q 036976 131 YLPQDKL 137 (243)
Q Consensus 131 YlP~~~l 137 (243)
-+|.=..
T Consensus 240 Tlp~i~a 246 (340)
T 2e8v_A 240 SFPIVHA 246 (340)
T ss_dssp CHHHHHH
T ss_pred hHHHHHH
Confidence 8887543
No 32
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=93.53 E-value=0.31 Score=41.67 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhh----------hhhhhCCCcccC
Q 036976 64 ENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNFLRDV----------GEDASRGRVYLP 133 (243)
Q Consensus 64 ~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~~~~~~~~a~~lG~alql~nilRDi----------~~D~~~gR~YlP 133 (243)
.|++++..-++.-.|++..+++.+-..-.+... +.+.+++.++|.|+|+.+=+-|+ +.|+..|.+-+|
T Consensus 154 ~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~--~~l~~~g~~lG~aFQi~DD~lD~~~d~~~GK~~g~Dl~egK~T~p 231 (299)
T 1v4e_A 154 ITKEEYLRIVEGKSGALFGLALQLPALLEGELG--EDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFP 231 (299)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCTTSSCCCTTTTCCHH
T ss_pred CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHccCccccCCCcchHhhCCCchHH
Confidence 789998888888888888887766432101111 45789999999999999988886 566778888888
Q ss_pred Hhh
Q 036976 134 QDK 136 (243)
Q Consensus 134 ~~~ 136 (243)
.=.
T Consensus 232 ~l~ 234 (299)
T 1v4e_A 232 LVT 234 (299)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 33
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=93.06 E-value=0.69 Score=39.73 Aligned_cols=109 Identities=15% Similarity=0.023 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh-hCCCcccCHhhHHhC
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDA-SRGRVYLPQDKLAQF 140 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~-~~gR~YlP~~~l~~~ 140 (243)
..|.+++..-.+.-.|++..+++.+-.. ...+....+.+..++.++|.|+|+.+=+-|+-.|. ..|.-
T Consensus 171 ~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~---------- 240 (309)
T 3pde_A 171 NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKA---------- 240 (309)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------
T ss_pred CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCC----------
Confidence 4588998888888888888887765422 11122223457789999999999999888885433 11110
Q ss_pred CCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCc
Q 036976 141 VLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 183 (243)
Q Consensus 141 gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~ 183 (243)
.-+|+.+|+.+-.+--.++.--+.+++++.+|.+.+..+|.
T Consensus 241 --~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~~ 281 (309)
T 3pde_A 241 --TQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLPT 281 (309)
T ss_dssp ------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred --ccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 12345455554444444555556777777887777766544
No 34
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=93.02 E-value=0.43 Score=42.25 Aligned_cols=121 Identities=13% Similarity=0.085 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHhhhHH-HHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhh-----------hhhhhCCC
Q 036976 63 YENLQELYLYCYYVAGTV-GLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDV-----------GEDASRGR 129 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~v-g~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi-----------~~D~~~gR 129 (243)
..|.+++..-++.-.|+. ..+++++-.. ...+....+.+..+..++|.|+|+.+=+-|+ +.|+..|.
T Consensus 202 ~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK 281 (380)
T 3lk5_A 202 NESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGK 281 (380)
T ss_dssp CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTC
T ss_pred CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCC
Confidence 458888877777766766 4555544221 1111122345778999999999999988876 57888999
Q ss_pred cccCHhhHHhCCC--Ch---Hhh---hhccCCH-HHH---HH------HHHHHHHHHHHHHHHHHchhhcCc
Q 036976 130 VYLPQDKLAQFVL--CD---KDV---FARKVTD-NWR---EF------MKEQIKRARTFFNMAEEGASQLDK 183 (243)
Q Consensus 130 ~YlP~~~l~~~gv--~~---~~l---~~~~~~~-~~~---~l------~~~~~~~A~~~~~~a~~~~~~lp~ 183 (243)
+-+|.=..-+..- ++ +.| +....++ .+. ++ +...-+.++.+.++|.+.+..+|.
T Consensus 282 ~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~ 353 (380)
T 3lk5_A 282 RTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDI 353 (380)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred chHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9888654333210 11 112 1111122 222 22 223345678888888888888874
No 35
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=92.88 E-value=1.1 Score=39.79 Aligned_cols=120 Identities=14% Similarity=0.091 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHhhhHH-HHHHHhh---h-CCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhh----------hhhhhC
Q 036976 63 YENLQELYLYCYYVAGTV-GLMSVPV---M-GIAPDSSSSAQSIYNGALNLGVGNQLTNFLRDV----------GEDASR 127 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~v-g~l~~~l---~-g~~~~~~~~~~~~~~~a~~lG~alql~nilRDi----------~~D~~~ 127 (243)
-.|++++..-++.-.|+. ..+.+.+ + |..++. ...+.+..++.++|.|+|+.+=+-|+ +.|+..
T Consensus 229 ~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~-~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~e 307 (395)
T 2ihi_A 229 MINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDN-LIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQN 307 (395)
T ss_dssp GCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTC-THHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTTT
T ss_pred CCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhh-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhc
Confidence 357888877666666665 3333332 3 322221 00245778999999999999988887 568889
Q ss_pred CCcccCHhhHHhCCCChHh---hhh--ccCCH-HHHH---------HHHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 128 GRVYLPQDKLAQFVLCDKD---VFA--RKVTD-NWRE---------FMKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 128 gR~YlP~~~l~~~gv~~~~---l~~--~~~~~-~~~~---------l~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
|.+-+|.=..-+. .++++ |.+ +..++ .+.. ++....+.++.++++|.+.+..+|..
T Consensus 308 gK~T~p~l~al~~-~~~~~~~~L~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~ 378 (395)
T 2ihi_A 308 NKLTWPLIKTFEL-CSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHE 378 (395)
T ss_dssp TCCCHHHHHHHHH-CCHHHHHHHHHHCC-CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCH
T ss_pred CCchHHHHHHHHh-CCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9998886543332 13321 211 11122 1211 22333456778888888888888874
No 36
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=92.59 E-value=0.24 Score=42.37 Aligned_cols=100 Identities=16% Similarity=0.089 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhhh-----------hhhhCCCc
Q 036976 62 RYENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNFLRDVG-----------EDASRGRV 130 (243)
Q Consensus 62 ~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~~~~~~~~a~~lG~alql~nilRDi~-----------~D~~~gR~ 130 (243)
...|.+++..-.+.-.|++..+++.+-..-.+... +.+..++.++|.|+|+.|=+-|+- .|+..|++
T Consensus 164 ~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~--~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~ 241 (297)
T 3m0g_A 164 VPLTLDEIIRLQAGKTGALISFAAQAGAILAGADR--GPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKA 241 (297)
T ss_dssp SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHHHHTTCC---------------------C
T ss_pred CCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCc
Confidence 35688999888888888888877765432101111 147889999999999998777663 44555555
Q ss_pred ccCHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCccC
Q 036976 131 YLPQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKDS 185 (243)
Q Consensus 131 YlP~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~~~ 185 (243)
-+|.= -.++.--+.++.+.++|.+.+..+|...
T Consensus 242 T~p~l----------------------~~l~~a~~~~~~~~~~A~~~L~~~~~~~ 274 (297)
T 3m0g_A 242 TFVSL----------------------LGLAGAKSRAADLVAEAEAALAPYGEAA 274 (297)
T ss_dssp CHHHH----------------------HCSSHHHHHHHHHHHHHHHHTGGGGGGG
T ss_pred cHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 44443 2334445667788888888888888753
No 37
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=92.35 E-value=1.7 Score=37.44 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHhhhHH-HHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhh----------hhhhhCCC
Q 036976 62 RYENLQELYLYCYYVAGTV-GLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDV----------GEDASRGR 129 (243)
Q Consensus 62 ~~~t~~dL~~Y~~~~Ag~v-g~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi----------~~D~~~gR 129 (243)
...|++++..-++.-.|++ ..+++++-.. ...+.. .. +..++.++|.|+|+.|=+-|+ +.|+..|.
T Consensus 158 ~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~-~~-l~~~g~~lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK 235 (330)
T 1wmw_A 158 FDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPP-AA-YEEGGLRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGK 235 (330)
T ss_dssp CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCC-HH-HHHHHHHHHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTC
T ss_pred CCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHH-HH-HHHHHHHHHHHHHHHHccCcccCCcccCCCcCchhhCCC
Confidence 3568899888888888888 8887766432 111111 12 678999999999999888886 57889999
Q ss_pred cccCHhhH
Q 036976 130 VYLPQDKL 137 (243)
Q Consensus 130 ~YlP~~~l 137 (243)
+-+|.=..
T Consensus 236 ~T~p~i~a 243 (330)
T 1wmw_A 236 RTLILLRF 243 (330)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 98887543
No 38
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=91.53 E-value=0.97 Score=38.53 Aligned_cols=109 Identities=19% Similarity=0.124 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCCC-CC-CCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh-hCCCcccCHhhHHh
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGIA-PD-SSSSAQSIYNGALNLGVGNQLTNFLRDVGEDA-SRGRVYLPQDKLAQ 139 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~-~~-~~~~~~~~~~~a~~lG~alql~nilRDi~~D~-~~gR~YlP~~~l~~ 139 (243)
..|++++..-++.-.|++..+++.+-..- .+ +....+.+.+++.++|.|+|+.|=+-|+-.|. ..|. |
T Consensus 168 ~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK---~------ 238 (299)
T 1rqj_A 168 HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGK---R------ 238 (299)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS---C------
T ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCC---C------
Confidence 56889988888888888888877664322 11 11122457789999999999999888875443 1222 0
Q ss_pred CCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCc
Q 036976 140 FVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 183 (243)
Q Consensus 140 ~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~ 183 (243)
.-+|+.+++.+-.+--.++.--+.++.+.++|.+.+..+|.
T Consensus 239 ---~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~ 279 (299)
T 1rqj_A 239 ---QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAE 279 (299)
T ss_dssp ---TTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---hhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11233333333333333444556677777888777777765
No 39
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=91.43 E-value=6.7 Score=34.32 Aligned_cols=134 Identities=15% Similarity=0.075 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHhCC--CCHH-----------------hh-ccCCCCCCCCHHHHHHHHHHhhhHHHHHHHh--hhCCC-
Q 036976 35 DMLDAALTDAVFKFP--LDIK-----------------MR-MDTRKFRYENLQELYLYCYYVAGTVGLMSVP--VMGIA- 91 (243)
Q Consensus 35 ~pv~~aL~~~i~~~~--l~~~-----------------~~-~Dl~~~~~~t~~dL~~Y~~~~Ag~vg~l~~~--l~g~~- 91 (243)
.|+..+|.++.++.. .+.. .+ .......++|++|...+...+.|.--.+.+- .+|..
T Consensus 157 ~p~~~al~dl~~~~~~~~~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l 236 (382)
T 3kb9_A 157 DTLVAGFADSVRRLYAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCEL 236 (382)
T ss_dssp SHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCC
T ss_pred ChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCC
Confidence 589999999877654 3332 11 1123356889999999988887764433332 23442
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhhhCCCc-ccCHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHH
Q 036976 92 PDSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDASRGRV-YLPQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTF 170 (243)
Q Consensus 92 ~~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~~~gR~-YlP~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~ 170 (243)
++.....+.........+...-|+|=|-......++|.+ =.-.-.|+++|+|.++- .+.+..+++.+.+-
T Consensus 237 ~~~~~~~p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA---------~~~v~~~i~~~~k~ 307 (382)
T 3kb9_A 237 PDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEA---------IGEVRRRVEECITE 307 (382)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHH---------HHHHHHHHHHHHHH
T ss_pred CHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHH---------HHHHHHHHHHHHHH
Confidence 111111122344556677777888888887888888865 34445788899998763 33445555555555
Q ss_pred HHHHHHc
Q 036976 171 FNMAEEG 177 (243)
Q Consensus 171 ~~~a~~~ 177 (243)
+.++.+.
T Consensus 308 ~~~~~~~ 314 (382)
T 3kb9_A 308 FLAVERD 314 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 40
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=90.84 E-value=3.8 Score=34.67 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=66.4
Q ss_pred hhccCCCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhhhh----hhhCCC
Q 036976 54 MRMDTRKFRYENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNFLRDVGE----DASRGR 129 (243)
Q Consensus 54 ~~~Dl~~~~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~~~~~~~~a~~lG~alql~nilRDi~~----D~~~gR 129 (243)
...|+.. .+++....+.-.|++..+++.+-..-..+....+.+..++.++|.|+|+.+=+-|+-. |...|.
T Consensus 151 Q~~dl~~-----~~~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~~K~dl~~gk 225 (289)
T 2azj_A 151 ALRDMYD-----NSDYIRTIELKTGSLFKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTKKVEEIDGSA 225 (289)
T ss_dssp HHHTTTT-----TSCHHHHHHHHTHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCTTG
T ss_pred HHHHHhh-----HHHHHHHHHcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhhcCc
Confidence 4566663 4555566666777777776655322102222334577899999999999998888843 444555
Q ss_pred cccCHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCc
Q 036976 130 VYLPQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 183 (243)
Q Consensus 130 ~YlP~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~ 183 (243)
+-+|.=. .+.|. ...+ -..++.+.++|.+.+..+|.
T Consensus 226 ~Tlp~l~-~~~g~--------------~~a~---~~~a~~~~~~A~~~L~~lp~ 261 (289)
T 2azj_A 226 KQLFKYY-REGKL--------------EEYV---RSVYLEYKQKYDELISNIPF 261 (289)
T ss_dssp GGGHHHH-TTTCH--------------HHHH---HHHHHHHHHHHHHHHHTSCC
T ss_pred ccHHHHH-HcCCH--------------HHHH---HHHHHHHHHHHHHHHHhCCC
Confidence 6666543 22221 1111 23788888888888888886
No 41
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=90.25 E-value=1.7 Score=38.55 Aligned_cols=120 Identities=11% Similarity=-0.025 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHhhhHH-HHHHHhhh----CCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhhh----------hhhhC
Q 036976 63 YENLQELYLYCYYVAGTV-GLMSVPVM----GIAPDSSSSAQSIYNGALNLGVGNQLTNFLRDVG----------EDASR 127 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~v-g~l~~~l~----g~~~~~~~~~~~~~~~a~~lG~alql~nilRDi~----------~D~~~ 127 (243)
-.|++++..-++.-.|+. ..+.+.+- |..++. ..+.+..++.++|.|+|+.+=+-|+- .|+..
T Consensus 222 ~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~--~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~e 299 (390)
T 3dyh_A 222 EFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTV--DMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQD 299 (390)
T ss_dssp TCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGS--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTT
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCCCcchhhc
Confidence 357888877777777776 55554432 222111 12346789999999999999888873 58889
Q ss_pred CCcccCHhhHHhCCCChHh---hhh--ccCCHH-HH---HHH------HHHHHHHHHHHHHHHHchhhcCccC
Q 036976 128 GRVYLPQDKLAQFVLCDKD---VFA--RKVTDN-WR---EFM------KEQIKRARTFFNMAEEGASQLDKDS 185 (243)
Q Consensus 128 gR~YlP~~~l~~~gv~~~~---l~~--~~~~~~-~~---~l~------~~~~~~A~~~~~~a~~~~~~lp~~~ 185 (243)
|.+-+|.=..-+.. ++++ |.+ +..++. +. +++ ..-.+.++.+++++.+.+..+|...
T Consensus 300 gK~T~pvi~al~~~-~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~ 371 (390)
T 3dyh_A 300 AKCSWLAVTFLAKA-SSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCS 371 (390)
T ss_dssp TCCCHHHHHHHHHC-CHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHhC-CHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99988765433322 3332 221 112222 22 221 1222335677777777777777643
No 42
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=89.70 E-value=3.1 Score=35.34 Aligned_cols=117 Identities=17% Similarity=0.116 Sum_probs=69.4
Q ss_pred hhccCCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh-hCCCc
Q 036976 54 MRMDTRKF-RYENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDA-SRGRV 130 (243)
Q Consensus 54 ~~~Dl~~~-~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~-~~gR~ 130 (243)
+..|+... ...|.+++..-.+.-.|++..+++.+-.. ...+....+.+..++.++|.|+|+.|=+-|+-.|. ..|+-
T Consensus 151 Q~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~ 230 (291)
T 3npk_A 151 QAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKP 230 (291)
T ss_dssp HHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCc
Confidence 33455322 34688998888888888888887765322 11111223457789999999999999999987665 33432
Q ss_pred ccCHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCcc
Q 036976 131 YLPQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 131 YlP~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
. |. | .++.+=.+.-.++.--+.+++++++|.+.+..++..
T Consensus 231 ~---------~~---d--~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~ 270 (291)
T 3npk_A 231 T---------NN---D--IHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEK 270 (291)
T ss_dssp ---------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred c---------ch---h--cCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhchh
Confidence 1 11 1 344444444445555567788888888887777654
No 43
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=89.21 E-value=8.4 Score=32.67 Aligned_cols=147 Identities=7% Similarity=-0.037 Sum_probs=82.5
Q ss_pred HHHHHHHHHcCCC---CCHHHHHHHHHHHhCC--CCHH-----------------hh-ccCCCCCCC-CHHHHHHHHHHh
Q 036976 21 WEERLQDIFYGRP---YDMLDAALTDAVFKFP--LDIK-----------------MR-MDTRKFRYE-NLQELYLYCYYV 76 (243)
Q Consensus 21 w~~~l~~~~~g~~---~~pv~~aL~~~i~~~~--l~~~-----------------~~-~Dl~~~~~~-t~~dL~~Y~~~~ 76 (243)
+-+++.++..|.. ..|+..+|.++..+.. .... .+ ........+ |++|...+...+
T Consensus 97 ~~~~l~~~~~~~~p~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s 176 (337)
T 1ps1_A 97 LTDQVAAALDGPLPDTAPPIAHGFADIWRRTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHT 176 (337)
T ss_dssp HHHHHHGGGTSCCCTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccc
Confidence 3334444444532 3588888888765432 2222 11 223345678 999998888888
Q ss_pred hhHHHHHHHhhh--CCC-CCCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhhhCCCc-ccCHhhHHhCCCChHhhhhccC
Q 036976 77 AGTVGLMSVPVM--GIA-PDSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDASRGRV-YLPQDKLAQFVLCDKDVFARKV 152 (243)
Q Consensus 77 Ag~vg~l~~~l~--g~~-~~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~~~gR~-YlP~~~l~~~gv~~~~l~~~~~ 152 (243)
.|.--.+++-.+ |.. ++.....+.........+...-|+|=|.......++|-+ =.-.-.|+++|+|.++
T Consensus 177 ~g~~~~~~~~~~~~g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g~s~ee------ 250 (337)
T 1ps1_A 177 IGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKSR------ 250 (337)
T ss_dssp TCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHHH------
T ss_pred cchhhHHHHHHHHcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHcCCCHHH------
Confidence 876554444333 432 111011122335566677788888888888888888874 3445678899999765
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 036976 153 TDNWREFMKEQIKRARTFFNMAEE 176 (243)
Q Consensus 153 ~~~~~~l~~~~~~~A~~~~~~a~~ 176 (243)
..+.+..+++.+.+-+.+...
T Consensus 251 ---A~~~v~~~i~~~~~~~~~~~~ 271 (337)
T 1ps1_A 251 ---SVSHMQNEVRARLEQYLLLES 271 (337)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH
Confidence 233455666666666655543
No 44
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=88.96 E-value=2.6 Score=35.64 Aligned_cols=105 Identities=13% Similarity=0.038 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh-hCCCcccCHhhHHhCC
Q 036976 63 YENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDA-SRGRVYLPQDKLAQFV 141 (243)
Q Consensus 63 ~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~-~~gR~YlP~~~l~~~g 141 (243)
..|++++..-++.-.|++..+++.+-..-.+... +.+..++.++|.|+|+.+=+-|+-.|. ..|.- + -+
T Consensus 162 ~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~--~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~-~-g~------ 231 (284)
T 2ftz_A 162 EVSQEMVERMYAFXTGALFAFCFSAPFILXGXDH--TXMXLLGEXFGVAFQIYDDLXDILGSFEKVGKD-L-GK------ 231 (284)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------------
T ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCC-c-ch------
Confidence 5689999998888888888887776432101111 147899999999999999888887665 23331 0 01
Q ss_pred CChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCc
Q 036976 142 LCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 183 (243)
Q Consensus 142 v~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~ 183 (243)
|+. +.+-.+--.++.--+.++.+.++|.+.+..+|.
T Consensus 232 ----Dl~--K~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 267 (284)
T 2ftz_A 232 ----DTE--XVTLVXXVGIQXAREMADXYYEEVLXGIESEGL 267 (284)
T ss_dssp -----------CHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ----hcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 111 112222222445567778888888888877774
No 45
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=86.66 E-value=11 Score=32.23 Aligned_cols=115 Identities=14% Similarity=-0.007 Sum_probs=69.6
Q ss_pred hhccCCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhh-hCCC
Q 036976 54 MRMDTRKF-RYENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSA-QSIYNGALNLGVGNQLTNFLRDVGEDA-SRGR 129 (243)
Q Consensus 54 ~~~Dl~~~-~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~-~~~~~~a~~lG~alql~nilRDi~~D~-~~gR 129 (243)
+..|+... .-.|.+++..-++.-.|++..+++.+-.. ...+.... +.+..++.++|.|+|+.|=+-|+-.|. ..|.
T Consensus 165 Q~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK 244 (311)
T 3llw_A 165 QALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGK 244 (311)
T ss_dssp HHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCc
Confidence 33454432 34688898888887778877777665432 11111223 457789999999999999999987665 2333
Q ss_pred cccCHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcC
Q 036976 130 VYLPQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLD 182 (243)
Q Consensus 130 ~YlP~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp 182 (243)
- ..+ .+++.+=.+--.++.--..+++++.+|.+.+..++
T Consensus 245 ~-------------~g~-~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~ 283 (311)
T 3llw_A 245 T-------------THL-DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALK 283 (311)
T ss_dssp --------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred c-------------ccc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1 112 34444544445556666778888888888877644
No 46
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=83.83 E-value=27 Score=32.23 Aligned_cols=105 Identities=18% Similarity=0.050 Sum_probs=58.8
Q ss_pred CCCCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCchh-----hhhHHHHHHHHHHHHHHHHHHhhhhhhhCCCc-ccCH
Q 036976 61 FRYENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSA-----QSIYNGALNLGVGNQLTNFLRDVGEDASRGRV-YLPQ 134 (243)
Q Consensus 61 ~~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~~-----~~~~~~a~~lG~alql~nilRDi~~D~~~gR~-YlP~ 134 (243)
...+|++|.......+.|.--.++...+|..+...... ....+..+..+...-|.|=|.......++|.+ =.=.
T Consensus 387 g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~ 466 (549)
T 1n1b_A 387 GYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQ 466 (549)
T ss_dssp TCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHH
T ss_pred CCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHH
Confidence 45679999988888887765555665666543221110 01113444455555566666666666677765 2224
Q ss_pred hhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Q 036976 135 DKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMA 174 (243)
Q Consensus 135 ~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a 174 (243)
-.|+++|+|.++ ..+-+..+++.+.+-+.+.
T Consensus 467 cyMke~g~s~ee---------A~~~i~~~i~~~wk~ln~e 497 (549)
T 1n1b_A 467 CYMKETNASEEE---------AVEHVKFLIREAWKDMNTA 497 (549)
T ss_dssp HHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 578899999876 3445778888888777774
No 47
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=83.62 E-value=19 Score=31.61 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHhhhHH-HHHHHhh---h-CCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhh----------hhhhhCCC
Q 036976 65 NLQELYLYCYYVAGTV-GLMSVPV---M-GIAPDSSSSAQSIYNGALNLGVGNQLTNFLRDV----------GEDASRGR 129 (243)
Q Consensus 65 t~~dL~~Y~~~~Ag~v-g~l~~~l---~-g~~~~~~~~~~~~~~~a~~lG~alql~nilRDi----------~~D~~~gR 129 (243)
|++++..=.+.=.|+. ..+.+.+ + |...+ ....+.+..++.++|.|+|+.+=+-|+ +.|+..|.
T Consensus 231 t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d-~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK 309 (395)
T 3mav_A 231 NFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVD-NLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNK 309 (395)
T ss_dssp SHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTT-CTHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCTTTTTC
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHhcCC
Confidence 6677666555555554 3333222 2 33221 112245678999999999999988886 57888899
Q ss_pred cccCHhhHHhCCCChHh---hhh--ccCCHHHHHHHHH----------HHHHHHHHHHHHHHchhhcCcc
Q 036976 130 VYLPQDKLAQFVLCDKD---VFA--RKVTDNWREFMKE----------QIKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 130 ~YlP~~~l~~~gv~~~~---l~~--~~~~~~~~~l~~~----------~~~~A~~~~~~a~~~~~~lp~~ 184 (243)
+-+|.=..-+.. ++++ |.+ +..++.-.+.++. .-+.++.+.+++...+..+|..
T Consensus 310 ~T~p~i~al~~~-~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~ 378 (395)
T 3mav_A 310 LTWPLIKTFELC-SEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHE 378 (395)
T ss_dssp CCHHHHHHHHHS-CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCCH
T ss_pred chHHHHHHHHhC-CHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 988876443321 3322 221 2223322222222 2234566777777777777654
No 48
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=82.39 E-value=24 Score=30.68 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh------hhhhhhCCCcccCHhhHHhCCCChHh---hhh--ccCCHHHHHHHHHH----
Q 036976 99 QSIYNGALNLGVGNQLTNFLRD------VGEDASRGRVYLPQDKLAQFVLCDKD---VFA--RKVTDNWREFMKEQ---- 163 (243)
Q Consensus 99 ~~~~~~a~~lG~alql~nilRD------i~~D~~~gR~YlP~~~l~~~gv~~~~---l~~--~~~~~~~~~l~~~~---- 163 (243)
+.+..++..+|.|+|+.+=+-| ++.|+..|.+-+|.=..-+. .++++ |.+ ++....++++...+
T Consensus 237 ~~l~~~g~~lG~aFQI~DDiLD~~~gK~~g~Dl~egK~T~p~i~al~~-~~~~~r~~L~~~~~~~~~~vk~l~~~l~~~~ 315 (368)
T 2q58_A 237 NLIEAILYKLGEFYQVHNDVSDYLFNDSNADDICRFKLTWPLQKSFEI-ADEEMKLKISENYGKNSSLVKDCYNLLKINE 315 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSCCCSSCTTTSCCCCHHHHSSTTT-CCHHHHHHHHHHTTTCHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCchHhcCCcHHHHHHHHHh-CCHHHHHHHHHHhCCCHHHHHHHHHHHhhHH
Confidence 3467899999999999999988 46899999998886532221 23332 111 23333444443322
Q ss_pred --HHHHHHHHHHHHHchhhcCcc
Q 036976 164 --IKRARTFFNMAEEGASQLDKD 184 (243)
Q Consensus 164 --~~~A~~~~~~a~~~~~~lp~~ 184 (243)
.+.++..++++.+.+..+|..
T Consensus 316 ~~~ey~~~~~~~~~~~i~~l~~~ 338 (368)
T 2q58_A 316 HYLEYQRNALDYLIKLVKDITDD 338 (368)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHHHHhccch
Confidence 344667777777777777654
No 49
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=80.99 E-value=22 Score=29.33 Aligned_cols=132 Identities=11% Similarity=-0.002 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHhCCC--CHH------------hh-ccCCCCCCCCHHHHHHHHHHhhhHHHHHHHhh--hCCCCCCCch
Q 036976 35 DMLDAALTDAVFKFPL--DIK------------MR-MDTRKFRYENLQELYLYCYYVAGTVGLMSVPV--MGIAPDSSSS 97 (243)
Q Consensus 35 ~pv~~aL~~~i~~~~l--~~~------------~~-~Dl~~~~~~t~~dL~~Y~~~~Ag~vg~l~~~l--~g~~~~~~~~ 97 (243)
.|+..+|.++.++..- +.. .+ .+.....++|++|...+...+.|.--.+.+-. +|..-. ...
T Consensus 108 ~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~-~e~ 186 (300)
T 1di1_A 108 KPEEFILYDLWESMRAHDAELANEVLEPTFVFMRAQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLS-ADE 186 (300)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCC-HHH
T ss_pred cHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCC-HHH
Confidence 5888888776554321 111 11 23344678899999888877777544433333 343211 111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhhCCC--------c-ccCHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHH
Q 036976 98 AQSIYNGALNLGVGNQLTNFLRDVGEDASRGR--------V-YLPQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRAR 168 (243)
Q Consensus 98 ~~~~~~~a~~lG~alql~nilRDi~~D~~~gR--------~-YlP~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~ 168 (243)
.+.........+...-|+|=|-......++|- + -.-.-.|+++|+|.++ ..+.+..+++.+.
T Consensus 187 ~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~ 257 (300)
T 1di1_A 187 LQDMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIPA---------TKRVLWSMTREWE 257 (300)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHHHcCCCHHH---------HHHHHHHHHHHHH
Confidence 12334556666777777777777777776665 2 3456678889998765 3344566666666
Q ss_pred HHHHHHHH
Q 036976 169 TFFNMAEE 176 (243)
Q Consensus 169 ~~~~~a~~ 176 (243)
+.+.+..+
T Consensus 258 ~~~~~~~~ 265 (300)
T 1di1_A 258 TVHDEIVA 265 (300)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 50
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=78.61 E-value=11 Score=31.45 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=42.9
Q ss_pred hhccCCCCC-CCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHH
Q 036976 54 MRMDTRKFR-YENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTN 116 (243)
Q Consensus 54 ~~~Dl~~~~-~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~n 116 (243)
+..|+.... ..|.+++..-++.-.|++..+++.+-.. ...+....+.+..++.++|.|+|+.+
T Consensus 155 Q~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~D 219 (274)
T 3kra_B 155 LHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMME 219 (274)
T ss_dssp HHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445665433 5788888887888888888887766432 11222223457789999999999966
No 51
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=67.04 E-value=2 Score=27.33 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.4
Q ss_pred hCCCcccCHhhHHhCCCChHhhh
Q 036976 126 SRGRVYLPQDKLAQFVLCDKDVF 148 (243)
Q Consensus 126 ~~gR~YlP~~~l~~~gv~~~~l~ 148 (243)
++|++.||.++.++.|+.+.|-+
T Consensus 20 ~kGqItIPkeiR~~Lgi~~Gd~l 42 (59)
T 1yfb_A 20 ELGRVVIPIELRRTLGIAEKDAL 42 (59)
T ss_dssp TTCEEECCHHHHHHTTCCTTCEE
T ss_pred CCCEEEeCHHHHHHcCCCCCCEE
Confidence 68999999999999999987654
No 52
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=63.47 E-value=91 Score=28.58 Aligned_cols=106 Identities=13% Similarity=0.042 Sum_probs=63.6
Q ss_pred CCCCCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCch-h---hhhHHHHHHHHHHHHHHHHHHhhhhhhhCCCc-ccCH
Q 036976 60 KFRYENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSS-A---QSIYNGALNLGVGNQLTNFLRDVGEDASRGRV-YLPQ 134 (243)
Q Consensus 60 ~~~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~-~---~~~~~~a~~lG~alql~nilRDi~~D~~~gR~-YlP~ 134 (243)
....+|++|.......+.|.--.++...+|..+..... . ....+..+..+...-|.|=|.....+.++|-+ =.=.
T Consensus 380 ~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~ 459 (543)
T 2ong_A 380 GGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQ 459 (543)
T ss_dssp TTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHH
T ss_pred cCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHH
Confidence 45567999988888888776555555555433221110 0 00112334445555566666666677778875 2234
Q ss_pred hhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Q 036976 135 DKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMA 174 (243)
Q Consensus 135 ~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a 174 (243)
-.|+++|+|.++ ..+-+..+++.+.+.+.+.
T Consensus 460 cyMke~g~s~ee---------A~~~i~~~ie~~wk~ln~e 490 (543)
T 2ong_A 460 CYMSDYNASEAE---------ARKHVKWLIAEVWKKMNAE 490 (543)
T ss_dssp HHHHHTCCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 678999999765 2344677777777777763
No 53
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=63.02 E-value=3.3 Score=25.47 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.3
Q ss_pred hCCCcccCHhhHHhCCCChHhhh
Q 036976 126 SRGRVYLPQDKLAQFVLCDKDVF 148 (243)
Q Consensus 126 ~~gR~YlP~~~l~~~gv~~~~l~ 148 (243)
++|++.||.++.++.|+.+.|-.
T Consensus 10 ~kgqi~IPk~ir~~lgi~~Gd~v 32 (53)
T 2l66_A 10 RNYQVTIPAKVRQKFQIKEGDLV 32 (53)
T ss_dssp SSSCBCCCHHHHHHSCCCTTCEE
T ss_pred CCCEEEeCHHHHHHcCcCCCCEE
Confidence 68999999999999999987653
No 54
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=60.88 E-value=12 Score=31.16 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=36.6
Q ss_pred hhccCCCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCC-CCCCCchhhhhHHHHHHHHHHHHHHH
Q 036976 54 MRMDTRKFRYENLQELYLYCYYVAGTVGLMSVPVMGI-APDSSSSAQSIYNGALNLGVGNQLTN 116 (243)
Q Consensus 54 ~~~Dl~~~~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~-~~~~~~~~~~~~~~a~~lG~alql~n 116 (243)
+..|+....-.+.+.++.-++.-.|++..+++.+-.. ...+....+.+..++.++|.|+|+.+
T Consensus 157 Q~lDl~~~~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~D 220 (273)
T 3qkc_B 157 QYHELGLNQLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLG 220 (273)
T ss_dssp HHHHTTCCSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556655433455555544455555667776665322 11111223457789999999999865
No 55
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=56.12 E-value=86 Score=25.96 Aligned_cols=130 Identities=11% Similarity=-0.024 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHhCCC--CHH------------h-hccCCCCCCCCHHHHHHHHHHhhhHHHHHHHhh--hCCCCCCCch
Q 036976 35 DMLDAALTDAVFKFPL--DIK------------M-RMDTRKFRYENLQELYLYCYYVAGTVGLMSVPV--MGIAPDSSSS 97 (243)
Q Consensus 35 ~pv~~aL~~~i~~~~l--~~~------------~-~~Dl~~~~~~t~~dL~~Y~~~~Ag~vg~l~~~l--~g~~~~~~~~ 97 (243)
.|+..+|.++.++..- +.- . ..+.....++|++|...+...+.|.--.+.+-. +|..-. ...
T Consensus 122 ~~~~~al~d~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~-~e~ 200 (320)
T 3bny_A 122 IPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLS-PSE 200 (320)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCC-HHH
T ss_pred CHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCC-HHH
Confidence 5888888776543321 100 1 123344678899999888887777544333333 343211 111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhhCCC---------cccCHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHH
Q 036976 98 AQSIYNGALNLGVGNQLTNFLRDVGEDASRGR---------VYLPQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRAR 168 (243)
Q Consensus 98 ~~~~~~~a~~lG~alql~nilRDi~~D~~~gR---------~YlP~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~ 168 (243)
.+.........+...-++|=|-......++|- .=.-.-.|+++|+|.++- .+.+..+++...
T Consensus 201 ~~~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~~m~~~g~s~eeA---------~~~~~~~i~~~~ 271 (320)
T 3bny_A 201 LQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAA---------KRVLFVMCREWE 271 (320)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHHHHHHHTCCHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHHHHHHcCCCHHHH---------HHHHHHHHHHHH
Confidence 12234555666777777787777777777664 234556788899997652 233445555444
Q ss_pred HHHHHH
Q 036976 169 TFFNMA 174 (243)
Q Consensus 169 ~~~~~a 174 (243)
+.+.+.
T Consensus 272 ~~~~~l 277 (320)
T 3bny_A 272 LRHQLL 277 (320)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 56
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=54.73 E-value=1.3e+02 Score=27.67 Aligned_cols=103 Identities=7% Similarity=0.025 Sum_probs=57.1
Q ss_pred CCCCCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCchhhhhHH-------HHHHHHHHHHHHHHHHhhhhhhhCCCc-c
Q 036976 60 KFRYENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYN-------GALNLGVGNQLTNFLRDVGEDASRGRV-Y 131 (243)
Q Consensus 60 ~~~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~~~~~~~-------~a~~lG~alql~nilRDi~~D~~~gR~-Y 131 (243)
....+|++|......-+.|..-.++...+|..+... +++.+ .....+...-|.|=+..-....++|-+ -
T Consensus 391 ~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt---~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van 467 (554)
T 3g4d_A 391 QNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVT---PETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCS 467 (554)
T ss_dssp TTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSC---HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCC
T ss_pred cCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCC---HHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccH
Confidence 345789999888888877776566666666543221 11222 223334444444444444444556654 2
Q ss_pred cCHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Q 036976 132 LPQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMA 174 (243)
Q Consensus 132 lP~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a 174 (243)
.=.-.|+++|+|.++ ..+-+..+++.+.+-+.+.
T Consensus 468 ~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~e 501 (554)
T 3g4d_A 468 AIECYMEEYGVTAQE---------AYDVFNKHVESAWKDLNQE 501 (554)
T ss_dssp HHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 224468889999876 3345677777777766653
No 57
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=53.43 E-value=54 Score=25.72 Aligned_cols=61 Identities=7% Similarity=-0.045 Sum_probs=43.4
Q ss_pred hhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHchhhcCccCChHHHHHHHHHHHHHHHHHHC
Q 036976 135 DKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEEN 206 (243)
Q Consensus 135 ~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a~~~~~~lp~~~~~~~~~~~~~~~~iL~~l~~~ 206 (243)
+.++++|++++++.+.+.+|.....+..+...+..-+..+ ..++...-.+|..+.+.+.+.
T Consensus 91 ~~~~~~Gi~~~~~~~~~~~p~t~aY~~~l~~~a~~~~~~~-----------~aAl~pc~~~Y~~ig~~l~~~ 151 (214)
T 2qzc_A 91 KLYSKLDISRDVIVKTGYNLINYAYTRHLYYYANLDWNKF-----------LVAWTPCMFGYSIVGDYVIDS 151 (214)
T ss_dssp HHHHHTTCCHHHHHHSCCCHHHHHHHHHHHHHHHHCHHHH-----------HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCHHHHhhCCCChHHHHHHHHHHHHHhcCHHHH-----------HHHHHHHHHHHHHHHHHHHhC
Confidence 4468899999999998889998888888887765422221 123445566788888887544
No 58
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=51.85 E-value=1.5e+02 Score=27.34 Aligned_cols=100 Identities=9% Similarity=-0.013 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCchhhhhH-------HHHHHHHHHHHHHHHHHhhhhhhhCCCc-cc
Q 036976 61 FRYENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIY-------NGALNLGVGNQLTNFLRDVGEDASRGRV-YL 132 (243)
Q Consensus 61 ~~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~~~~~~-------~~a~~lG~alql~nilRDi~~D~~~gR~-Yl 132 (243)
...+|++|...-..-+.|..-.+++..+|...-. +++. +..+..+.-.-|.|=+..-....++|-+ -.
T Consensus 388 gyvPT~EEYl~na~vSsg~~~l~~~~f~g~~~lt----~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~ 463 (550)
T 3m00_A 388 GYTPPVSEYLSNALATTTYYLLATTSYLGMKSAT----EQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATG 463 (550)
T ss_dssp TCCCCHHHHHHHHTGGGSHHHHHHHHHHTCTTCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSH
T ss_pred CCCCCHHHHHHhccccchHHHHHHHHHHcCCCCc----HHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccH
Confidence 4467999988888888876655555566752111 1112 2233344444555555555566678866 23
Q ss_pred CHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHH
Q 036976 133 PQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNM 173 (243)
Q Consensus 133 P~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~ 173 (243)
=.-.|+++|+|.++ ..+-+..+++.+.+-+.+
T Consensus 464 V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~ 495 (550)
T 3m00_A 464 IECCMRDYGISTKE---------AMAKFQNMAETAWKDINE 495 (550)
T ss_dssp HHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHH
Confidence 34578889999876 334467777777776665
No 59
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=46.98 E-value=1.8e+02 Score=26.85 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCch-h---hhhHHHHHHHHHHHHHHHHHHhhhhhhhCCCcc-cCHh
Q 036976 61 FRYENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSS-A---QSIYNGALNLGVGNQLTNFLRDVGEDASRGRVY-LPQD 135 (243)
Q Consensus 61 ~~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~-~---~~~~~~a~~lG~alql~nilRDi~~D~~~gR~Y-lP~~ 135 (243)
...+|++|.......+.|.--.++...++..+..... . ....+..+..+...-|.|=|.....+.++|-+- .=.-
T Consensus 408 g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~c 487 (569)
T 2j5c_A 408 GHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQC 487 (569)
T ss_dssp TCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHH
T ss_pred CCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHH
Confidence 4567999988888877775555555555443221110 0 001123333344444555555555556666641 2245
Q ss_pred hHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Q 036976 136 KLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMA 174 (243)
Q Consensus 136 ~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a 174 (243)
.|+++|+|.++ ..+-+..+++.+.+.+.+.
T Consensus 488 yMke~g~s~ee---------A~~~i~~~ie~~wk~ln~e 517 (569)
T 2j5c_A 488 YMNEKNASEEE---------AREHVRSLIDQTWKMMNKE 517 (569)
T ss_dssp C------CCHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 68888988765 2334666777776666653
No 60
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=46.95 E-value=1.7e+02 Score=26.83 Aligned_cols=106 Identities=8% Similarity=-0.010 Sum_probs=61.0
Q ss_pred CCCCCCHHHHHHHHHHhhhHHHHHHHhhhCCCCCCCch-h---hhhHHHHHHHHHHHHHHHHHHhhhhhhhCCCc-ccCH
Q 036976 60 KFRYENLQELYLYCYYVAGTVGLMSVPVMGIAPDSSSS-A---QSIYNGALNLGVGNQLTNFLRDVGEDASRGRV-YLPQ 134 (243)
Q Consensus 60 ~~~~~t~~dL~~Y~~~~Ag~vg~l~~~l~g~~~~~~~~-~---~~~~~~a~~lG~alql~nilRDi~~D~~~gR~-YlP~ 134 (243)
....+|++|......-+.|..-.++...+|..+..... . ....+.....+...-|.|=+..-....++|-+ -.=.
T Consensus 389 ~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~ 468 (555)
T 3n0f_A 389 NKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVS 468 (555)
T ss_dssp TTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHH
T ss_pred cCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHH
Confidence 34578999998888887775444444444322111100 0 00112334445555556655565566677765 2234
Q ss_pred hhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Q 036976 135 DKLAQFVLCDKDVFARKVTDNWREFMKEQIKRARTFFNMA 174 (243)
Q Consensus 135 ~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~~~~~a 174 (243)
-.|+++|+|.++ ..+-+..+++.+.+-+.+.
T Consensus 469 cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~e 499 (555)
T 3n0f_A 469 CYMRTKGISEEL---------ATESVMNLIDETWKKMNKE 499 (555)
T ss_dssp HHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 578889999876 3345677777777766653
No 61
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=46.77 E-value=68 Score=25.50 Aligned_cols=63 Identities=8% Similarity=-0.001 Sum_probs=44.1
Q ss_pred HhhHHhCCCChHhh-hhccCCHHHHHHHHHHHHHHHH--HHHHHHHchhhcCccCChHHHHHHHHHHHHHHHHHHCC
Q 036976 134 QDKLAQFVLCDKDV-FARKVTDNWREFMKEQIKRART--FFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEEND 207 (243)
Q Consensus 134 ~~~l~~~gv~~~~l-~~~~~~~~~~~l~~~~~~~A~~--~~~~a~~~~~~lp~~~~~~~~~~~~~~~~iL~~l~~~~ 207 (243)
.+.++++|++.+++ .+.+.++.....+..+...+.. -+..+.. ++.....+|..+.+++.+.+
T Consensus 87 ~~~~~~~gi~~~~~~~~~~~~p~~~aY~~~l~~~a~~~~~~~~~~a-----------Al~pC~~~Y~~ig~~l~~~~ 152 (229)
T 4fn6_A 87 DILAQIVGESYEEIIKTKVWPPSGDHYIKHMYFQAHSRENAIYTIA-----------AMAPCPYIYAELAKRSQSDH 152 (229)
T ss_dssp HHHHHHHTSCHHHHHHSCCCCHHHHHHHHHHHHHHHHCCSHHHHHH-----------HHTHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHcCCCHHHHhhhcCCCHHHHHHHHHHHHHHhhcCCHHHHHH-----------HHHHHHHHHHHHHHHHHHcC
Confidence 45567899999999 7778899998888888877665 3333221 23334467888888887654
No 62
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=46.72 E-value=69 Score=26.00 Aligned_cols=64 Identities=8% Similarity=-0.089 Sum_probs=44.3
Q ss_pred HhhHHhCCCChHhh-hhccCCHHHHHHHHHHHHHHHH--HHHHHHHchhhcCccCChHHHHHHHHHHHHHHHHHHCCC
Q 036976 134 QDKLAQFVLCDKDV-FARKVTDNWREFMKEQIKRART--FFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEENDY 208 (243)
Q Consensus 134 ~~~l~~~gv~~~~l-~~~~~~~~~~~l~~~~~~~A~~--~~~~a~~~~~~lp~~~~~~~~~~~~~~~~iL~~l~~~~~ 208 (243)
.+.++++|++.+++ .+.+.+|.....+..+...+.. -+..+. -++.....+|..+.+.+.+.+-
T Consensus 106 ~~~~~~~gi~~~~~~~~~~~~p~~~aYt~~ll~~a~~~g~~~~~l-----------aAl~PC~w~Y~eig~~l~~~~~ 172 (248)
T 3no6_A 106 EVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTI-----------AAMAPCPYVYAVIGKRAMEDPK 172 (248)
T ss_dssp HHHHHHTTSCHHHHCCSCCCCHHHHHHHHHHHHHHHHCSSTHHHH-----------HHHTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCCHHHHhhhcCCCHHHHHHHHHHHHHHhcCCCHHHHH-----------HHHHHHHHHHHHHHHHHHhcCC
Confidence 35678899999998 7778889888888888877655 222222 1233445678888888877643
No 63
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=46.68 E-value=63 Score=25.53 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=43.3
Q ss_pred HhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHH-HHHHHHHchhhcCccCChHHHHHHHHHHHHHHHHHHC
Q 036976 134 QDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRART-FFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEEN 206 (243)
Q Consensus 134 ~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~-~~~~a~~~~~~lp~~~~~~~~~~~~~~~~iL~~l~~~ 206 (243)
.+.++++|++.+++.+.+.+|.....+..+...+.. -+..+ ..++.....+|..+.+.+.+.
T Consensus 91 ~~~~~~~Gi~~~~~~~~~~~p~~~aY~~~l~~~a~~~~~~~~-----------~aAl~pc~~~Y~~ig~~l~~~ 153 (221)
T 3ibx_A 91 NHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSIKEV-----------AAAVLSCGWSYLVIAQNLSQI 153 (221)
T ss_dssp HHHHHHTTCCHHHHHHCCCCHHHHHHHHHHHHHHHHSCHHHH-----------HHHTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHcCCCHHHHhhccCCHHHHHHHHHHHHHHhcCCHHHH-----------HHHHHHHHHHHHHHHHHHHhc
Confidence 346788999999999988999999888888776654 12211 123344556777888777654
No 64
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=46.48 E-value=84 Score=24.74 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=42.1
Q ss_pred hhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHH-HHHHHHHchhhcCccCChHHHHHHHHHHHHHHHHHHC
Q 036976 135 DKLAQFVLCDKDVFARKVTDNWREFMKEQIKRART-FFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEEN 206 (243)
Q Consensus 135 ~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~-~~~~a~~~~~~lp~~~~~~~~~~~~~~~~iL~~l~~~ 206 (243)
+.++++|++++++.+.+.+|.....+..+...+.. -+..+ ..++.....+|..+.+.+.+.
T Consensus 96 ~~~~~~Gi~~~~~~~~~~~p~t~aY~~~l~~~a~~~~~~~~-----------laAl~pc~~~Y~~ig~~l~~~ 157 (221)
T 2gm8_A 96 ALLKEVGLSLRDAAEAEPNRVNVSYMAYLKSTCALEGFYQC-----------MAALLPCFWSYAEIAERHGGK 157 (221)
T ss_dssp HHHHHTTCCHHHHHHSCCCHHHHHHHHHHHHHHHHSCHHHH-----------HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHcCCCHHHHhhCCCChHHHHHHHHHHHHHhcCCHHHH-----------HHHHHhHHHHHHHHHHHHHhc
Confidence 34688999999999988899988888888776543 12221 123445556777777777554
No 65
>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} SCOP: a.132.1.0
Probab=46.26 E-value=99 Score=24.47 Aligned_cols=62 Identities=8% Similarity=0.016 Sum_probs=43.4
Q ss_pred hhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHH-HHHHHHHchhhcCccCChHHHHHHHHHHHHHHHHHHCC
Q 036976 135 DKLAQFVLCDKDVFARKVTDNWREFMKEQIKRART-FFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEEND 207 (243)
Q Consensus 135 ~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~-~~~~a~~~~~~lp~~~~~~~~~~~~~~~~iL~~l~~~~ 207 (243)
+.++++|++.+++.+.+.++.....+..+...+.. -+.. ..-++.....+|..+.+.+.+.+
T Consensus 94 ~~~~~~Gi~~~~~~~~~~~p~~~aY~~~l~~~a~~~~~~~-----------~~aAl~pc~~~Y~~ig~~l~~~~ 156 (226)
T 3mvu_A 94 GICEASGISQEALFATRERAENLAYTRFVLEAGYSGDLLD-----------LLAALAPCVMGYGEIGKRLTAEA 156 (226)
T ss_dssp HHHHHTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHSCHHH-----------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHhhCCCCHHHHHHHHHHHHHHhcCCHHH-----------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34778999999998888899988888888776543 1111 12244455567888888877653
No 66
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=45.72 E-value=1.6e+02 Score=26.05 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=52.4
Q ss_pred CCCCCCHHHHHHHHHHhhhH-HHHHHHhhhCCC-CCCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhhhCC-Cc-ccCHh
Q 036976 60 KFRYENLQELYLYCYYVAGT-VGLMSVPVMGIA-PDSSSSAQSIYNGALNLGVGNQLTNFLRDVGEDASRG-RV-YLPQD 135 (243)
Q Consensus 60 ~~~~~t~~dL~~Y~~~~Ag~-vg~l~~~l~g~~-~~~~~~~~~~~~~a~~lG~alql~nilRDi~~D~~~g-R~-YlP~~ 135 (243)
...++|++|...+-..+++. +..++...+|.. ++.....+...+.....+...-|+|=|.......++| .+ -+..-
T Consensus 280 ~g~vPsleEYl~~R~~sg~~p~~~l~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~ 359 (433)
T 3v1v_A 280 TGHVPEVWEYLAMRQFNNFRPCPTITDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVV 359 (433)
T ss_dssp HTCCCCHHHHHHHHHHSSSTTTGGGHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHH
T ss_pred cCCCCCHHHHHHHHHHHhHHHHHHHHHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHH
Confidence 35688999999987776322 112222224542 1111111223345566677777888777777877774 44 55666
Q ss_pred hHHhCCCChHh
Q 036976 136 KLAQFVLCDKD 146 (243)
Q Consensus 136 ~l~~~gv~~~~ 146 (243)
+|+++|+|.++
T Consensus 360 ~mke~g~S~ee 370 (433)
T 3v1v_A 360 IAEREQLCERD 370 (433)
T ss_dssp HHHHHTCCHHH
T ss_pred HHHhcCCCHHH
Confidence 78889999765
No 67
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3
Probab=44.56 E-value=95 Score=24.49 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=41.6
Q ss_pred hhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHHH-HHHHHHHchhhcCccCChHHHHHHHHHHHHHHHHHHC
Q 036976 135 DKLAQFVLCDKDVFARKVTDNWREFMKEQIKRART-FFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEEN 206 (243)
Q Consensus 135 ~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~~-~~~~a~~~~~~lp~~~~~~~~~~~~~~~~iL~~l~~~ 206 (243)
+.++++|++++++.+.+.+|.....+..+...+.. -+..+ ..++...-.+|..+.+.+.+.
T Consensus 89 ~~~~~~Gi~~~~~~~~~~~p~t~aY~~~l~~~a~~~~~~~~-----------laAl~pc~~~Y~~ig~~l~~~ 150 (226)
T 1udd_A 89 KLLKELDLTLEDAIKTEPTLVNSAYMDFMLATAYKGNIIEG-----------LTALLPCFWSYAEIAEYHKDK 150 (226)
T ss_dssp HHHHHTTCCHHHHHHSCCCHHHHHHHHHHHHHHHHSCHHHH-----------HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHcCCCHHHHhhCCCCHHHHHHHHHHHHHHhcCCHHHH-----------HHHHHHHHHHHHHHHHHHHhc
Confidence 34688999999999888899988888888876643 12221 123444556777777776554
No 68
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=34.03 E-value=93 Score=25.41 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=27.5
Q ss_pred hhHHhCCCChHhhhhccCCHHHHHHHHHHHHHHH
Q 036976 135 DKLAQFVLCDKDVFARKVTDNWREFMKEQIKRAR 168 (243)
Q Consensus 135 ~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~ 168 (243)
+.++++|++++++.+.+.+|.....+..+...+.
T Consensus 115 ~~~~~~Gi~~~~l~~~~~~pat~aYt~~l~~~a~ 148 (263)
T 2qcx_A 115 EFAELLEISEEERKAFKPSPTAYSFTSHMYRSVL 148 (263)
T ss_dssp HHHHHHTCCHHHHHSCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHhhCCCChHHHHHHHHHHHHHh
Confidence 3457889999999888888888888888877654
No 69
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=29.61 E-value=1e+02 Score=21.42 Aligned_cols=46 Identities=24% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHchhhcCccCChHHHHHHHHHHHHHHHHHH
Q 036976 160 MKEQIKRARTFFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEE 205 (243)
Q Consensus 160 ~~~~~~~A~~~~~~a~~~~~~lp~~~~~~~~~~~~~~~~iL~~l~~ 205 (243)
+...++.|+.++.+-.-....+|+..|..+..-+.-|+.-|+++++
T Consensus 54 ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 54 FDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666777777655555678888888887888889988888765
No 70
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=28.74 E-value=1.5e+02 Score=20.55 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHchhhcCccCChHHHHHHHHHHHHHHHHHH
Q 036976 159 FMKEQIKRARTFFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEE 205 (243)
Q Consensus 159 l~~~~~~~A~~~~~~a~~~~~~lp~~~~~~~~~~~~~~~~iL~~l~~ 205 (243)
-+...++.|..++.+-.-....+|+..|..+..-+.-|+.-|+++++
T Consensus 42 ~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 42 NVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777766666778999999888888899999988765
No 71
>1yyp_B DNA polymerase, POL; processivity fold (SAME fold AS HSV UL42, PCNA, and homotrim sliding clamps), replication-transferase complex; HET: DNA; 2.50A {Human herpesvirus 5}
Probab=25.26 E-value=23 Score=18.49 Aligned_cols=13 Identities=23% Similarity=0.074 Sum_probs=10.0
Q ss_pred CCcccCHhhHHhC
Q 036976 128 GRVYLPQDKLAQF 140 (243)
Q Consensus 128 gR~YlP~~~l~~~ 140 (243)
-|+|||...|.-.
T Consensus 3 ~RiYl~~~Fl~~c 15 (26)
T 1yyp_B 3 RRLHLEPAFLPYS 15 (26)
T ss_pred ceEecCHHHHHHh
Confidence 4899999977654
No 72
>1z72_A Transcriptional regulator, putative; structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 1.45A {Streptococcus pneumoniae} SCOP: a.132.1.3 PDB: 2a6b_A
Probab=23.29 E-value=1.1e+02 Score=24.10 Aligned_cols=33 Identities=6% Similarity=0.118 Sum_probs=27.8
Q ss_pred hHHhCCCChHhhhhccCCHHHHHHHHHHHHHHH
Q 036976 136 KLAQFVLCDKDVFARKVTDNWREFMKEQIKRAR 168 (243)
Q Consensus 136 ~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A~ 168 (243)
.++++|++.+++.+.+.++.....+..+...+.
T Consensus 102 ~~~~~Gi~~~~~~~~~~~p~t~aY~~~l~~~a~ 134 (225)
T 1z72_A 102 AFKELKVAENDYLEVTLHPVTKAFQDLMYSAVA 134 (225)
T ss_dssp HHHHTTCCTHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHhhcCCCHHHHHHHHHHHHHHc
Confidence 458899999999988888988888888877654
No 73
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=23.03 E-value=1e+02 Score=24.09 Aligned_cols=35 Identities=3% Similarity=-0.005 Sum_probs=28.1
Q ss_pred CHhhHHhCCCChHhhhhccCCHHHHHHHHHHHHHH
Q 036976 133 PQDKLAQFVLCDKDVFARKVTDNWREFMKEQIKRA 167 (243)
Q Consensus 133 P~~~l~~~gv~~~~l~~~~~~~~~~~l~~~~~~~A 167 (243)
=.+.++..|++.+++.+.+..|..+..+..+...+
T Consensus 92 ~~~~~~~~Gi~~~~~~~~~~~p~t~~y~~~~~~~~ 126 (231)
T 1rcw_A 92 WKQFVFALGVTPEELEAHEPSEAAKAKVATFMRWC 126 (231)
T ss_dssp HHHHHHHTTCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 34678899999999988888888887777776654
Done!