Query 036977
Match_columns 693
No_of_seqs 313 out of 3393
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:19:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.3E-65 5E-70 580.9 28.9 550 41-665 26-645 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.5E-43 3.2E-48 424.7 33.1 459 156-674 182-840 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.5E-36 3.2E-41 312.9 15.3 250 163-435 1-283 (287)
4 PRK04841 transcriptional regul 99.1 5.7E-10 1.2E-14 133.9 17.0 278 154-491 10-328 (903)
5 PF05729 NACHT: NACHT domain 99.1 5.1E-10 1.1E-14 104.9 11.7 151 180-336 1-163 (166)
6 PF01637 Arch_ATPase: Archaeal 99.1 3.4E-10 7.4E-15 112.6 8.5 200 160-376 1-229 (234)
7 TIGR03015 pepcterm_ATPase puta 99.0 2.8E-08 6E-13 101.2 20.7 180 176-377 40-234 (269)
8 PLN03210 Resistant to P. syrin 99.0 1.4E-09 2.9E-14 132.1 11.5 121 550-673 777-907 (1153)
9 TIGR02928 orc1/cdc6 family rep 99.0 2.8E-08 6E-13 106.1 19.4 177 158-337 15-213 (365)
10 PRK00411 cdc6 cell division co 99.0 1.9E-08 4.2E-13 108.4 17.8 177 157-337 29-221 (394)
11 COG2909 MalT ATP-dependent tra 98.9 2.8E-08 6.1E-13 109.4 14.9 278 154-491 15-334 (894)
12 TIGR00635 ruvB Holliday juncti 98.8 8.5E-08 1.8E-12 99.6 16.5 256 157-456 3-287 (305)
13 PRK00080 ruvB Holliday junctio 98.8 1.9E-07 4.1E-12 97.7 16.8 260 154-456 21-308 (328)
14 KOG0617 Ras suppressor protein 98.8 5.2E-10 1.1E-14 99.2 -2.5 133 509-661 52-195 (264)
15 PRK06893 DNA replication initi 98.7 2.1E-07 4.5E-12 91.9 13.6 146 178-374 38-196 (229)
16 PRK13342 recombination factor 98.6 1.8E-07 3.8E-12 100.9 12.2 175 155-377 9-192 (413)
17 KOG0617 Ras suppressor protein 98.6 2.6E-09 5.7E-14 94.9 -2.6 127 551-679 53-193 (264)
18 PF13401 AAA_22: AAA domain; P 98.6 2.4E-07 5.1E-12 83.0 9.4 94 178-271 3-99 (131)
19 PRK07003 DNA polymerase III su 98.6 6.6E-07 1.4E-11 99.1 14.4 179 155-375 13-214 (830)
20 PRK12402 replication factor C 98.6 6.2E-07 1.3E-11 94.6 13.9 197 154-375 11-220 (337)
21 PF13173 AAA_14: AAA domain 98.6 1.1E-07 2.3E-12 84.8 6.8 121 179-328 2-127 (128)
22 COG2256 MGS1 ATPase related to 98.6 1.3E-06 2.9E-11 88.7 15.0 147 154-336 20-176 (436)
23 PRK14961 DNA polymerase III su 98.6 1.5E-06 3.3E-11 92.0 16.2 180 155-376 13-215 (363)
24 PRK00440 rfc replication facto 98.5 1.8E-06 3.8E-11 90.4 15.0 181 155-376 14-198 (319)
25 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.2E-06 2.6E-11 86.7 12.7 164 162-376 21-196 (226)
26 PRK06645 DNA polymerase III su 98.5 2.4E-06 5.3E-11 93.0 15.7 180 155-376 18-224 (507)
27 PRK14949 DNA polymerase III su 98.5 1.3E-06 2.8E-11 98.8 13.8 180 155-376 13-215 (944)
28 PLN03025 replication factor C 98.5 1.4E-06 3.1E-11 90.7 13.3 182 154-375 9-194 (319)
29 cd00009 AAA The AAA+ (ATPases 98.5 1.1E-06 2.4E-11 80.1 10.9 60 161-222 1-60 (151)
30 PRK12323 DNA polymerase III su 98.5 1.2E-06 2.7E-11 95.7 12.7 181 155-377 13-221 (700)
31 PTZ00202 tuzin; Provisional 98.5 2.3E-06 5E-11 88.6 13.8 171 148-337 252-435 (550)
32 PLN00113 leucine-rich repeat r 98.5 2.8E-07 6E-12 111.5 8.4 159 511-671 116-296 (968)
33 PF13191 AAA_16: AAA ATPase do 98.5 8E-07 1.7E-11 84.8 9.7 48 159-206 1-51 (185)
34 PRK04195 replication factor C 98.5 1.9E-06 4.1E-11 94.9 13.8 175 154-375 10-196 (482)
35 PRK14963 DNA polymerase III su 98.4 3.7E-06 8.1E-11 92.0 15.5 180 155-376 11-212 (504)
36 cd01128 rho_factor Transcripti 98.4 5E-07 1.1E-11 89.4 7.6 93 178-271 15-115 (249)
37 PRK14960 DNA polymerase III su 98.4 2.6E-06 5.7E-11 93.4 13.8 180 155-376 12-214 (702)
38 COG1474 CDC6 Cdc6-related prot 98.4 2.5E-05 5.4E-10 82.0 20.4 171 160-337 19-204 (366)
39 PRK14962 DNA polymerase III su 98.4 5.4E-06 1.2E-10 90.0 15.4 177 155-373 11-210 (472)
40 PF05496 RuvB_N: Holliday junc 98.4 1.4E-05 2.9E-10 76.2 15.9 178 154-376 20-216 (233)
41 PRK14957 DNA polymerase III su 98.4 4.3E-06 9.3E-11 91.7 14.5 180 155-376 13-215 (546)
42 PLN00113 leucine-rich repeat r 98.4 8.1E-07 1.7E-11 107.5 8.5 160 511-672 138-321 (968)
43 PRK14956 DNA polymerase III su 98.3 5.1E-06 1.1E-10 88.7 13.3 192 154-377 14-218 (484)
44 PTZ00112 origin recognition co 98.3 2.1E-05 4.6E-10 87.9 18.2 174 157-337 754-950 (1164)
45 PRK08727 hypothetical protein; 98.3 6.6E-06 1.4E-10 81.4 13.0 146 158-337 19-176 (233)
46 PRK14964 DNA polymerase III su 98.3 8.4E-06 1.8E-10 88.1 14.7 180 155-376 10-212 (491)
47 PRK14951 DNA polymerase III su 98.3 9E-06 2E-10 90.4 15.3 180 155-376 13-220 (618)
48 KOG0444 Cytoskeletal regulator 98.3 4.9E-08 1.1E-12 103.0 -2.3 50 512-561 125-183 (1255)
49 TIGR02397 dnaX_nterm DNA polym 98.3 1.6E-05 3.5E-10 84.5 16.1 179 155-376 11-213 (355)
50 PRK05564 DNA polymerase III su 98.3 1.1E-05 2.3E-10 84.0 14.1 173 158-376 4-185 (313)
51 PRK07994 DNA polymerase III su 98.3 6.5E-06 1.4E-10 91.7 13.1 181 155-377 13-216 (647)
52 PRK13341 recombination factor 98.3 7E-06 1.5E-10 93.3 13.1 149 154-337 24-182 (725)
53 PRK14958 DNA polymerase III su 98.3 8.5E-06 1.8E-10 89.4 13.3 180 155-376 13-215 (509)
54 PRK05896 DNA polymerase III su 98.3 9.8E-06 2.1E-10 89.0 13.2 181 154-376 12-215 (605)
55 PRK14955 DNA polymerase III su 98.2 8.4E-06 1.8E-10 87.4 12.4 197 155-376 13-223 (397)
56 PRK08084 DNA replication initi 98.2 1.2E-05 2.6E-10 79.7 12.5 140 164-337 30-181 (235)
57 PRK09087 hypothetical protein; 98.2 1.6E-05 3.5E-10 77.9 13.2 138 178-374 43-188 (226)
58 PRK09376 rho transcription ter 98.2 4.1E-06 9E-11 86.4 9.1 92 178-271 168-268 (416)
59 PRK14970 DNA polymerase III su 98.2 2.7E-05 5.8E-10 83.0 15.5 179 155-375 14-203 (367)
60 COG3899 Predicted ATPase [Gene 98.2 7.8E-06 1.7E-10 95.2 12.2 250 160-429 2-333 (849)
61 PRK08691 DNA polymerase III su 98.2 2E-05 4.4E-10 87.5 13.9 180 155-376 13-215 (709)
62 KOG0444 Cytoskeletal regulator 98.2 5.6E-07 1.2E-11 95.3 1.7 158 510-670 52-256 (1255)
63 PRK14969 DNA polymerase III su 98.2 1.7E-05 3.8E-10 87.6 13.2 180 155-376 13-215 (527)
64 PRK14954 DNA polymerase III su 98.2 3.2E-05 6.9E-10 86.4 14.9 196 155-375 13-222 (620)
65 TIGR02903 spore_lon_C ATP-depe 98.1 3.2E-05 6.9E-10 87.2 15.0 174 155-337 151-367 (615)
66 TIGR00678 holB DNA polymerase 98.1 5.4E-05 1.2E-09 72.4 14.5 159 169-376 3-186 (188)
67 PRK07471 DNA polymerase III su 98.1 5.3E-05 1.2E-09 79.6 15.6 195 153-377 14-234 (365)
68 PRK09112 DNA polymerase III su 98.1 0.00011 2.4E-09 76.8 17.8 196 153-377 18-236 (351)
69 PRK07940 DNA polymerase III su 98.1 6.3E-05 1.4E-09 79.8 16.0 172 158-377 5-209 (394)
70 PRK15370 E3 ubiquitin-protein 98.1 4.9E-06 1.1E-10 95.1 8.2 148 514-671 242-400 (754)
71 PRK14959 DNA polymerase III su 98.1 2.8E-05 6.2E-10 85.9 13.6 179 155-375 13-214 (624)
72 KOG2543 Origin recognition com 98.1 4.9E-05 1.1E-09 76.8 13.6 172 157-336 5-193 (438)
73 PRK09111 DNA polymerase III su 98.1 3.8E-05 8.2E-10 85.7 14.3 195 154-377 20-229 (598)
74 PF00308 Bac_DnaA: Bacterial d 98.1 1.9E-05 4.2E-10 77.1 10.7 137 179-338 34-181 (219)
75 PRK14971 DNA polymerase III su 98.1 5.2E-05 1.1E-09 85.2 15.4 178 155-375 14-216 (614)
76 PRK14952 DNA polymerase III su 98.1 5.7E-05 1.2E-09 83.8 15.3 180 155-376 10-214 (584)
77 TIGR01242 26Sp45 26S proteasom 98.1 1.2E-05 2.5E-10 85.5 9.6 162 156-338 120-308 (364)
78 TIGR00767 rho transcription te 98.1 9.2E-06 2E-10 84.3 8.5 93 178-271 167-267 (415)
79 KOG0472 Leucine-rich repeat pr 98.1 1.9E-07 4.2E-12 94.0 -3.8 157 512-671 136-309 (565)
80 PRK05642 DNA replication initi 98.1 8E-05 1.7E-09 73.7 14.5 125 179-337 45-180 (234)
81 PRK07764 DNA polymerase III su 98.1 4.8E-05 1E-09 87.7 14.7 180 155-376 12-216 (824)
82 TIGR03345 VI_ClpV1 type VI sec 98.1 5.2E-05 1.1E-09 88.5 15.2 160 154-336 183-363 (852)
83 PRK08451 DNA polymerase III su 98.1 7.6E-05 1.7E-09 81.5 15.4 180 155-376 11-213 (535)
84 PRK15370 E3 ubiquitin-protein 98.1 6.5E-06 1.4E-10 94.1 7.4 154 513-676 220-384 (754)
85 KOG2028 ATPase related to the 98.1 2.4E-05 5.3E-10 78.1 10.0 150 156-336 136-294 (554)
86 PRK15386 type III secretion pr 98.0 8.4E-06 1.8E-10 85.0 7.2 112 550-669 71-187 (426)
87 PRK03992 proteasome-activating 98.0 7E-05 1.5E-09 80.0 13.8 160 157-337 130-316 (389)
88 PRK06305 DNA polymerase III su 98.0 9E-05 2E-09 80.4 14.7 178 155-375 14-216 (451)
89 PHA02544 44 clamp loader, smal 98.0 4.1E-05 8.8E-10 79.9 11.4 149 154-335 17-172 (316)
90 COG3903 Predicted ATPase [Gene 98.0 2.1E-06 4.6E-11 87.9 1.5 211 179-420 14-254 (414)
91 PRK07133 DNA polymerase III su 98.0 0.0001 2.3E-09 82.7 14.8 180 155-376 15-214 (725)
92 COG2255 RuvB Holliday junction 98.0 5.8E-05 1.3E-09 73.4 11.0 179 154-377 22-219 (332)
93 KOG0989 Replication factor C, 98.0 3.7E-05 7.9E-10 75.6 9.1 187 152-373 30-222 (346)
94 PRK14953 DNA polymerase III su 98.0 0.0002 4.4E-09 78.2 16.0 180 155-376 13-215 (486)
95 PRK15387 E3 ubiquitin-protein 97.9 2.4E-05 5.2E-10 89.2 8.7 83 578-666 343-429 (788)
96 PRK14950 DNA polymerase III su 97.9 0.00018 3.9E-09 81.0 15.7 192 155-377 13-217 (585)
97 PRK06647 DNA polymerase III su 97.9 0.00021 4.7E-09 79.3 16.0 180 154-376 12-215 (563)
98 TIGR02639 ClpA ATP-dependent C 97.9 7.5E-05 1.6E-09 86.5 12.7 159 155-337 179-359 (731)
99 PF05621 TniB: Bacterial TniB 97.9 0.00013 2.9E-09 72.8 12.6 106 166-271 45-157 (302)
100 KOG0472 Leucine-rich repeat pr 97.9 2.5E-06 5.4E-11 86.2 0.4 134 515-656 390-544 (565)
101 PRK08903 DnaA regulatory inact 97.9 0.00011 2.5E-09 72.5 11.6 163 162-377 23-195 (227)
102 PRK14087 dnaA chromosomal repl 97.9 0.00012 2.6E-09 79.4 12.6 162 180-376 142-314 (450)
103 PRK14088 dnaA chromosomal repl 97.9 0.00012 2.6E-09 79.3 12.5 140 179-337 130-277 (440)
104 PRK15387 E3 ubiquitin-protein 97.9 4.6E-05 1E-09 86.9 9.4 92 577-671 302-414 (788)
105 PRK14948 DNA polymerase III su 97.9 0.00034 7.4E-09 78.7 16.0 192 155-376 13-217 (620)
106 PRK14965 DNA polymerase III su 97.8 0.00018 3.8E-09 80.7 13.5 179 155-375 13-214 (576)
107 CHL00095 clpC Clp protease ATP 97.8 0.00015 3.3E-09 85.0 13.6 166 157-336 178-354 (821)
108 PF14516 AAA_35: AAA-like doma 97.8 0.0011 2.4E-08 69.2 18.3 198 154-377 7-235 (331)
109 TIGR03689 pup_AAA proteasome A 97.8 0.00023 5.1E-09 77.4 13.6 171 157-337 181-379 (512)
110 TIGR02881 spore_V_K stage V sp 97.8 0.00013 2.7E-09 73.8 10.8 155 158-337 6-192 (261)
111 PRK05563 DNA polymerase III su 97.8 0.00043 9.4E-09 77.2 15.9 180 154-376 12-215 (559)
112 PRK10865 protein disaggregatio 97.8 0.00023 5.1E-09 83.4 14.2 160 155-337 175-355 (857)
113 TIGR00362 DnaA chromosomal rep 97.8 0.0002 4.3E-09 77.3 12.0 159 179-373 136-302 (405)
114 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00053 1.2E-08 80.8 15.7 159 156-337 171-350 (852)
115 TIGR02880 cbbX_cfxQ probable R 97.7 0.00037 8.1E-09 71.0 12.6 133 181-338 60-210 (284)
116 PRK15386 type III secretion pr 97.7 6.8E-05 1.5E-09 78.4 7.2 144 513-669 52-210 (426)
117 TIGR01241 FtsH_fam ATP-depende 97.7 0.00072 1.6E-08 74.9 15.5 162 155-337 52-239 (495)
118 PRK14086 dnaA chromosomal repl 97.7 0.00036 7.7E-09 77.0 12.7 135 180-337 315-460 (617)
119 PRK11331 5-methylcytosine-spec 97.7 0.00021 4.5E-09 75.7 10.4 110 157-271 174-284 (459)
120 PRK12422 chromosomal replicati 97.7 0.00035 7.5E-09 75.6 12.4 138 179-338 141-286 (445)
121 KOG4194 Membrane glycoprotein 97.7 1.7E-05 3.6E-10 84.0 2.1 77 569-646 213-301 (873)
122 PTZ00454 26S protease regulato 97.7 0.00063 1.4E-08 72.4 14.0 160 157-337 144-330 (398)
123 PRK00149 dnaA chromosomal repl 97.7 0.00039 8.4E-09 76.1 12.7 156 179-374 148-315 (450)
124 PRK08181 transposase; Validate 97.7 0.0013 2.9E-08 65.9 15.3 107 172-306 101-210 (269)
125 PF13855 LRR_8: Leucine rich r 97.6 5E-05 1.1E-09 57.6 3.8 54 595-649 2-60 (61)
126 KOG2227 Pre-initiation complex 97.6 0.003 6.4E-08 66.0 17.6 178 155-339 147-341 (529)
127 CHL00181 cbbX CbbX; Provisiona 97.6 0.0012 2.5E-08 67.3 14.9 134 180-338 60-211 (287)
128 PTZ00361 26 proteosome regulat 97.6 0.00075 1.6E-08 72.4 13.4 160 157-337 182-368 (438)
129 PF14580 LRR_9: Leucine-rich r 97.6 4.1E-05 9E-10 71.2 3.3 93 552-649 20-124 (175)
130 PRK11034 clpA ATP-dependent Cl 97.6 7.2E-05 1.6E-09 85.6 5.9 158 157-336 185-362 (758)
131 PRK06620 hypothetical protein; 97.6 0.00018 4E-09 69.9 7.8 111 180-337 45-161 (214)
132 smart00382 AAA ATPases associa 97.6 0.00035 7.6E-09 62.8 8.9 91 179-273 2-92 (148)
133 COG0593 DnaA ATPase involved i 97.5 0.0083 1.8E-07 63.1 19.4 139 178-337 112-258 (408)
134 KOG0991 Replication factor C, 97.5 0.00016 3.5E-09 68.0 6.0 102 155-271 24-125 (333)
135 PRK08116 hypothetical protein; 97.5 0.00029 6.2E-09 71.1 8.3 105 180-305 115-221 (268)
136 KOG0618 Serine/threonine phosp 97.5 5.8E-06 1.3E-10 92.0 -4.2 74 511-587 239-320 (1081)
137 KOG1259 Nischarin, modulator o 97.5 2E-05 4.4E-10 76.6 -0.4 127 509-656 280-416 (490)
138 PF00004 AAA: ATPase family as 97.5 0.00018 3.8E-09 64.2 5.2 69 182-271 1-70 (132)
139 PRK10536 hypothetical protein; 97.4 0.0014 3E-08 64.4 11.1 58 155-214 52-109 (262)
140 COG1373 Predicted ATPase (AAA+ 97.4 0.00086 1.9E-08 71.7 10.5 138 162-332 21-163 (398)
141 PF14580 LRR_9: Leucine-rich r 97.4 0.00011 2.4E-09 68.4 3.2 72 550-625 41-124 (175)
142 PRK07399 DNA polymerase III su 97.4 0.0041 8.8E-08 64.2 15.0 191 158-377 4-217 (314)
143 CHL00176 ftsH cell division pr 97.4 0.0033 7.1E-08 70.9 15.3 160 157-337 182-367 (638)
144 PRK06526 transposase; Provisio 97.4 0.0026 5.7E-08 63.4 13.0 75 178-271 97-171 (254)
145 KOG3207 Beta-tubulin folding c 97.4 9.1E-05 2E-09 76.1 2.3 98 550-649 196-312 (505)
146 COG0466 Lon ATP-dependent Lon 97.4 0.0023 4.9E-08 70.4 12.9 167 158-337 323-509 (782)
147 TIGR00763 lon ATP-dependent pr 97.3 0.015 3.2E-07 68.1 20.7 164 158-336 320-505 (775)
148 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0027 5.7E-08 69.3 13.2 161 157-338 227-407 (489)
149 PRK14722 flhF flagellar biosyn 97.3 0.01 2.3E-07 62.1 16.9 88 179-269 137-225 (374)
150 PRK08118 topology modulation p 97.3 0.00014 3E-09 67.9 2.7 35 180-214 2-37 (167)
151 COG1222 RPT1 ATP-dependent 26S 97.3 0.011 2.4E-07 59.9 16.0 154 157-337 150-336 (406)
152 KOG4194 Membrane glycoprotein 97.3 0.00012 2.5E-09 77.8 2.3 56 592-648 291-351 (873)
153 PRK10787 DNA-binding ATP-depen 97.3 0.011 2.3E-07 68.7 18.4 167 158-337 322-507 (784)
154 PF12799 LRR_4: Leucine Rich r 97.3 0.00025 5.4E-09 49.5 3.2 41 614-656 1-41 (44)
155 PRK12727 flagellar biosynthesi 97.3 0.011 2.3E-07 64.2 16.9 89 178-269 349-438 (559)
156 PF13177 DNA_pol3_delta2: DNA 97.3 0.0017 3.7E-08 60.2 9.6 137 162-324 1-162 (162)
157 PRK05707 DNA polymerase III su 97.2 0.0055 1.2E-07 63.6 13.7 152 179-377 22-199 (328)
158 PRK08058 DNA polymerase III su 97.2 0.0035 7.7E-08 65.4 12.3 149 160-334 7-180 (329)
159 PRK00771 signal recognition pa 97.2 0.014 2.9E-07 62.9 16.7 88 178-269 94-185 (437)
160 PHA00729 NTP-binding motif con 97.2 0.0017 3.8E-08 62.6 9.0 36 169-204 7-42 (226)
161 TIGR00602 rad24 checkpoint pro 97.2 0.0017 3.7E-08 72.7 10.2 53 152-204 78-135 (637)
162 PRK12608 transcription termina 97.2 0.0036 7.8E-08 64.9 11.6 103 168-271 121-232 (380)
163 PF02562 PhoH: PhoH-like prote 97.1 0.0011 2.4E-08 63.2 7.1 132 162-307 4-158 (205)
164 PF04665 Pox_A32: Poxvirus A32 97.1 0.001 2.2E-08 64.9 6.9 35 181-217 15-49 (241)
165 COG0542 clpA ATP-binding subun 97.1 0.0085 1.8E-07 67.8 15.0 105 158-271 491-605 (786)
166 KOG2004 Mitochondrial ATP-depe 97.1 0.013 2.8E-07 64.4 15.6 168 157-337 410-597 (906)
167 KOG0618 Serine/threonine phosp 97.1 8.6E-05 1.9E-09 83.0 -1.0 96 572-670 378-487 (1081)
168 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0028 6.1E-08 62.9 10.0 92 178-270 18-126 (235)
169 PRK07261 topology modulation p 97.1 0.0018 3.9E-08 60.7 7.8 34 181-214 2-36 (171)
170 PRK06871 DNA polymerase III su 97.1 0.015 3.2E-07 60.0 15.1 175 165-376 9-198 (325)
171 KOG0739 AAA+-type ATPase [Post 97.1 0.077 1.7E-06 52.4 18.8 159 179-377 166-337 (439)
172 TIGR02237 recomb_radB DNA repa 97.1 0.0025 5.4E-08 62.0 9.0 88 179-270 12-108 (209)
173 PF00448 SRP54: SRP54-type pro 97.1 0.0058 1.3E-07 58.5 11.2 89 179-269 1-93 (196)
174 PRK12377 putative replication 97.1 0.0026 5.5E-08 63.1 9.0 75 178-270 100-174 (248)
175 PF10443 RNA12: RNA12 protein; 97.0 0.026 5.5E-07 59.3 16.4 157 163-337 1-230 (431)
176 TIGR01243 CDC48 AAA family ATP 97.0 0.0071 1.5E-07 70.5 13.8 49 156-204 176-237 (733)
177 TIGR02012 tigrfam_recA protein 97.0 0.0022 4.8E-08 65.7 8.3 87 178-271 54-145 (321)
178 PRK12726 flagellar biosynthesi 97.0 0.063 1.4E-06 55.9 18.5 91 178-270 205-296 (407)
179 PF05673 DUF815: Protein of un 97.0 0.0093 2E-07 57.9 11.7 53 154-206 23-79 (249)
180 KOG2228 Origin recognition com 97.0 0.0091 2E-07 59.9 11.8 176 157-336 23-219 (408)
181 TIGR01243 CDC48 AAA family ATP 97.0 0.0086 1.9E-07 69.8 13.9 160 157-337 452-636 (733)
182 cd00983 recA RecA is a bacter 97.0 0.0024 5.2E-08 65.5 8.1 86 179-271 55-145 (325)
183 PRK08769 DNA polymerase III su 97.0 0.026 5.6E-07 58.2 15.6 171 163-377 9-204 (319)
184 PRK09354 recA recombinase A; P 97.0 0.0029 6.3E-08 65.4 8.6 86 179-271 60-150 (349)
185 KOG0532 Leucine-rich repeat (L 97.0 0.00012 2.6E-09 77.6 -1.5 101 551-656 143-251 (722)
186 cd01393 recA_like RecA is a b 97.0 0.0049 1.1E-07 60.7 10.1 92 179-271 19-126 (226)
187 TIGR02639 ClpA ATP-dependent C 97.0 0.0062 1.3E-07 70.8 12.3 103 158-271 454-565 (731)
188 COG1223 Predicted ATPase (AAA+ 96.9 0.012 2.6E-07 56.7 11.8 155 157-338 120-299 (368)
189 cd00116 LRR_RI Leucine-rich re 96.9 0.00073 1.6E-08 70.5 4.0 119 551-671 108-262 (319)
190 KOG0735 AAA+-type ATPase [Post 96.9 0.011 2.4E-07 64.8 12.6 140 179-337 431-587 (952)
191 cd03238 ABC_UvrA The excision 96.9 0.0062 1.3E-07 57.1 9.3 125 178-320 20-161 (176)
192 PF13207 AAA_17: AAA domain; P 96.9 0.00098 2.1E-08 58.5 3.7 23 181-203 1-23 (121)
193 PF13855 LRR_8: Leucine rich r 96.9 0.0016 3.5E-08 49.2 4.3 60 551-625 1-60 (61)
194 COG0396 sufC Cysteine desulfur 96.8 0.003 6.4E-08 60.1 6.9 58 248-310 152-209 (251)
195 cd00116 LRR_RI Leucine-rich re 96.8 0.0007 1.5E-08 70.6 3.1 120 551-672 137-291 (319)
196 KOG0741 AAA+-type ATPase [Post 96.8 0.0062 1.4E-07 64.4 9.8 134 178-335 537-685 (744)
197 PRK09183 transposase/IS protei 96.8 0.037 7.9E-07 55.6 15.1 28 179-206 102-129 (259)
198 TIGR01425 SRP54_euk signal rec 96.8 0.11 2.4E-06 55.6 19.1 90 178-269 99-192 (429)
199 TIGR02640 gas_vesic_GvpN gas v 96.8 0.02 4.3E-07 57.8 12.9 57 164-227 8-64 (262)
200 TIGR02238 recomb_DMC1 meiotic 96.8 0.0086 1.9E-07 61.7 10.3 91 179-270 96-202 (313)
201 COG1875 NYN ribonuclease and A 96.8 0.0042 9.1E-08 62.9 7.5 138 158-307 224-390 (436)
202 COG0542 clpA ATP-binding subun 96.7 0.0023 5.1E-08 72.2 6.3 159 156-337 168-347 (786)
203 PRK05541 adenylylsulfate kinas 96.7 0.0044 9.5E-08 58.4 7.3 36 178-215 6-41 (176)
204 COG0470 HolB ATPase involved i 96.7 0.014 3E-07 61.0 11.9 143 159-326 2-171 (325)
205 TIGR03499 FlhF flagellar biosy 96.7 0.0097 2.1E-07 60.6 10.3 88 178-268 193-281 (282)
206 COG2812 DnaX DNA polymerase II 96.7 0.011 2.4E-07 64.2 11.1 185 155-373 13-212 (515)
207 cd03246 ABCC_Protease_Secretio 96.7 0.0066 1.4E-07 57.1 8.3 128 178-320 27-168 (173)
208 cd03223 ABCD_peroxisomal_ALDP 96.7 0.011 2.3E-07 55.2 9.7 126 178-320 26-160 (166)
209 PRK07952 DNA replication prote 96.7 0.076 1.6E-06 52.5 16.0 91 164-271 82-174 (244)
210 KOG0733 Nuclear AAA ATPase (VC 96.7 0.026 5.6E-07 61.0 13.3 160 157-337 189-375 (802)
211 cd01120 RecA-like_NTPases RecA 96.7 0.012 2.6E-07 54.3 10.0 40 181-222 1-40 (165)
212 PRK05703 flhF flagellar biosyn 96.7 0.069 1.5E-06 57.6 16.8 88 179-269 221-309 (424)
213 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0028 6.2E-08 65.4 5.9 47 159-205 52-104 (361)
214 cd03214 ABC_Iron-Siderophores_ 96.7 0.0071 1.5E-07 57.3 8.2 122 178-308 24-161 (180)
215 COG1126 GlnQ ABC-type polar am 96.7 0.0074 1.6E-07 56.9 8.0 123 178-308 27-199 (240)
216 PRK06696 uridine kinase; Valid 96.7 0.0031 6.8E-08 62.0 5.9 44 162-205 2-48 (223)
217 PLN03187 meiotic recombination 96.7 0.02 4.3E-07 59.5 12.0 91 179-270 126-232 (344)
218 cd03216 ABC_Carb_Monos_I This 96.7 0.0022 4.8E-08 59.6 4.6 118 178-307 25-144 (163)
219 KOG0734 AAA+-type ATPase conta 96.6 0.0059 1.3E-07 64.6 8.0 95 156-271 305-408 (752)
220 KOG3665 ZYG-1-like serine/thre 96.6 0.0008 1.7E-08 76.5 1.8 97 550-648 147-260 (699)
221 PF08423 Rad51: Rad51; InterP 96.6 0.0089 1.9E-07 59.9 9.0 90 179-269 38-143 (256)
222 cd01131 PilT Pilus retraction 96.6 0.0022 4.7E-08 61.7 4.4 110 180-308 2-112 (198)
223 PRK07993 DNA polymerase III su 96.6 0.058 1.3E-06 56.2 15.2 164 165-377 9-200 (334)
224 COG3267 ExeA Type II secretory 96.6 0.087 1.9E-06 51.2 15.0 179 176-377 48-241 (269)
225 PRK06921 hypothetical protein; 96.6 0.0074 1.6E-07 60.8 8.3 39 178-217 116-154 (266)
226 PRK08533 flagellar accessory p 96.6 0.0093 2E-07 58.8 8.7 88 179-271 24-129 (230)
227 PRK09361 radB DNA repair and r 96.6 0.0097 2.1E-07 58.6 8.9 86 179-269 23-117 (225)
228 KOG2120 SCF ubiquitin ligase, 96.6 0.00067 1.4E-08 66.4 0.5 119 551-671 234-375 (419)
229 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.0086 1.9E-07 58.8 8.1 125 179-308 30-202 (254)
230 PLN03150 hypothetical protein; 96.5 0.0036 7.8E-08 71.3 6.3 101 553-655 420-532 (623)
231 COG1484 DnaC DNA replication p 96.5 0.014 3E-07 58.4 9.7 76 178-271 104-179 (254)
232 COG1136 SalX ABC-type antimicr 96.5 0.013 2.9E-07 56.5 9.2 28 178-205 30-57 (226)
233 PRK11889 flhF flagellar biosyn 96.5 0.016 3.4E-07 60.6 10.2 90 178-269 240-330 (436)
234 PF00154 RecA: recA bacterial 96.5 0.015 3.3E-07 59.5 10.0 86 179-271 53-143 (322)
235 PRK04296 thymidine kinase; Pro 96.5 0.0032 6.9E-08 60.1 4.9 114 180-307 3-118 (190)
236 PRK10867 signal recognition pa 96.5 0.26 5.7E-06 53.0 19.9 91 178-269 99-193 (433)
237 PRK09270 nucleoside triphospha 96.5 0.029 6.4E-07 55.3 11.9 30 177-206 31-60 (229)
238 PRK14723 flhF flagellar biosyn 96.5 0.19 4.2E-06 57.4 19.5 88 179-269 185-273 (767)
239 PRK06090 DNA polymerase III su 96.5 0.067 1.4E-06 55.1 14.7 162 164-377 9-197 (319)
240 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.029 6.2E-07 55.7 11.6 88 178-270 20-137 (237)
241 KOG1969 DNA replication checkp 96.5 0.0069 1.5E-07 66.6 7.5 73 179-271 326-399 (877)
242 PRK06835 DNA replication prote 96.5 0.0058 1.3E-07 63.3 6.8 105 179-305 183-289 (329)
243 TIGR00959 ffh signal recogniti 96.5 0.24 5.2E-06 53.3 19.1 91 178-269 98-192 (428)
244 PF01695 IstB_IS21: IstB-like 96.5 0.0076 1.6E-07 56.7 6.9 104 178-306 46-151 (178)
245 TIGR03346 chaperone_ClpB ATP-d 96.5 0.0071 1.5E-07 71.4 8.2 106 158-271 565-679 (852)
246 cd03247 ABCC_cytochrome_bd The 96.4 0.0067 1.5E-07 57.3 6.5 28 178-205 27-54 (178)
247 cd03222 ABC_RNaseL_inhibitor T 96.4 0.009 2E-07 56.1 7.2 105 178-308 24-135 (177)
248 cd03230 ABC_DR_subfamily_A Thi 96.4 0.0065 1.4E-07 57.1 6.3 120 178-308 25-158 (173)
249 COG0488 Uup ATPase components 96.4 0.051 1.1E-06 60.0 14.0 132 178-322 347-511 (530)
250 PRK04132 replication factor C 96.4 0.034 7.4E-07 64.3 13.0 150 187-376 574-726 (846)
251 KOG2035 Replication factor C, 96.4 0.12 2.6E-06 50.6 14.6 183 155-374 10-221 (351)
252 cd01394 radB RadB. The archaea 96.4 0.014 3E-07 57.2 8.7 42 179-222 19-60 (218)
253 TIGR03345 VI_ClpV1 type VI sec 96.4 0.0056 1.2E-07 71.8 6.8 106 158-271 566-680 (852)
254 PRK10865 protein disaggregatio 96.4 0.0099 2.1E-07 70.0 8.7 106 158-271 568-682 (857)
255 TIGR02858 spore_III_AA stage I 96.4 0.013 2.8E-07 58.9 8.3 123 169-307 100-231 (270)
256 COG2884 FtsE Predicted ATPase 96.4 0.011 2.5E-07 54.4 7.0 29 178-206 27-55 (223)
257 COG4608 AppF ABC-type oligopep 96.4 0.014 3E-07 57.5 8.1 123 178-310 38-175 (268)
258 PRK12723 flagellar biosynthesi 96.3 0.027 5.9E-07 59.6 10.9 89 178-269 173-264 (388)
259 KOG4658 Apoptotic ATPase [Sign 96.3 0.0015 3.2E-08 76.4 1.6 98 550-650 570-680 (889)
260 COG0541 Ffh Signal recognition 96.3 0.48 1E-05 49.9 19.1 90 178-269 99-192 (451)
261 KOG3665 ZYG-1-like serine/thre 96.3 0.0026 5.6E-08 72.5 3.0 70 550-623 172-259 (699)
262 COG1618 Predicted nucleotide k 96.3 0.0057 1.2E-07 54.8 4.5 28 180-207 6-33 (179)
263 PRK08939 primosomal protein Dn 96.3 0.03 6.5E-07 57.6 10.5 91 162-271 135-229 (306)
264 CHL00095 clpC Clp protease ATP 96.3 0.013 2.9E-07 69.0 8.9 106 158-271 509-623 (821)
265 PTZ00035 Rad51 protein; Provis 96.3 0.036 7.9E-07 57.8 11.2 91 179-270 118-224 (337)
266 KOG0730 AAA+-type ATPase [Post 96.2 0.093 2E-06 57.6 14.3 141 177-339 466-618 (693)
267 PRK14974 cell division protein 96.2 0.063 1.4E-06 55.7 12.7 90 178-271 139-234 (336)
268 PRK06067 flagellar accessory p 96.2 0.025 5.3E-07 56.1 9.4 87 178-269 24-130 (234)
269 PRK06547 hypothetical protein; 96.2 0.0073 1.6E-07 56.5 5.3 36 169-204 5-40 (172)
270 PRK11034 clpA ATP-dependent Cl 96.2 0.0088 1.9E-07 68.9 7.0 103 158-271 458-569 (758)
271 PRK04301 radA DNA repair and r 96.2 0.025 5.4E-07 58.8 9.7 92 178-270 101-209 (317)
272 PRK15455 PrkA family serine pr 96.2 0.0061 1.3E-07 66.3 5.1 48 158-205 76-129 (644)
273 PLN03186 DNA repair protein RA 96.2 0.031 6.8E-07 58.2 10.2 91 179-270 123-229 (342)
274 KOG3207 Beta-tubulin folding c 96.2 0.0022 4.7E-08 66.3 1.6 94 550-646 221-334 (505)
275 PLN00020 ribulose bisphosphate 96.2 0.012 2.7E-07 60.5 6.9 30 177-206 146-175 (413)
276 cd03228 ABCC_MRP_Like The MRP 96.2 0.016 3.4E-07 54.4 7.3 28 178-205 27-54 (171)
277 cd02025 PanK Pantothenate kina 96.2 0.029 6.3E-07 54.8 9.4 41 181-221 1-41 (220)
278 TIGR02239 recomb_RAD51 DNA rep 96.2 0.021 4.6E-07 59.0 8.8 92 178-270 95-202 (316)
279 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.014 3.1E-07 52.9 6.7 106 178-308 25-130 (144)
280 PRK10733 hflB ATP-dependent me 96.1 0.051 1.1E-06 62.1 12.7 138 180-338 186-337 (644)
281 cd03115 SRP The signal recogni 96.1 0.036 7.8E-07 52.0 9.7 87 181-270 2-93 (173)
282 TIGR00554 panK_bact pantothena 96.1 0.031 6.8E-07 56.7 9.7 28 177-204 60-87 (290)
283 cd03229 ABC_Class3 This class 96.1 0.0082 1.8E-07 56.7 5.2 27 178-204 25-51 (178)
284 KOG0731 AAA+-type ATPase conta 96.1 0.11 2.4E-06 58.7 14.6 183 158-377 311-520 (774)
285 COG0468 RecA RecA/RadA recombi 96.1 0.043 9.3E-07 55.1 10.4 89 178-270 59-152 (279)
286 KOG4237 Extracellular matrix p 96.1 0.00092 2E-08 68.0 -1.5 154 510-665 88-349 (498)
287 cd01133 F1-ATPase_beta F1 ATP 96.1 0.033 7.3E-07 55.6 9.4 93 178-271 68-175 (274)
288 PF12799 LRR_4: Leucine Rich r 96.1 0.0067 1.5E-07 42.2 3.2 36 595-631 2-40 (44)
289 KOG0744 AAA+-type ATPase [Post 96.1 0.015 3.2E-07 58.0 6.7 83 179-271 177-262 (423)
290 COG1120 FepC ABC-type cobalami 96.1 0.026 5.5E-07 55.8 8.4 127 178-309 27-203 (258)
291 cd03281 ABC_MSH5_euk MutS5 hom 96.1 0.0037 8E-08 60.8 2.6 24 179-202 29-52 (213)
292 TIGR02236 recomb_radA DNA repa 96.0 0.041 9E-07 57.1 10.4 57 179-236 95-155 (310)
293 cd00267 ABC_ATPase ABC (ATP-bi 96.0 0.011 2.5E-07 54.4 5.6 121 178-309 24-144 (157)
294 PF05659 RPW8: Arabidopsis bro 96.0 0.054 1.2E-06 48.8 9.6 113 5-133 3-115 (147)
295 PF13238 AAA_18: AAA domain; P 96.0 0.0061 1.3E-07 53.9 3.5 22 182-203 1-22 (129)
296 PRK13543 cytochrome c biogenes 96.0 0.042 9E-07 53.6 9.7 27 178-204 36-62 (214)
297 PRK06964 DNA polymerase III su 96.0 0.13 2.9E-06 53.5 13.6 70 258-335 131-203 (342)
298 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.036 7.8E-07 55.7 9.3 41 178-220 35-75 (259)
299 cd01121 Sms Sms (bacterial rad 96.0 0.019 4.1E-07 60.6 7.5 88 179-271 82-170 (372)
300 PRK09519 recA DNA recombinatio 95.9 0.031 6.8E-07 63.8 9.4 87 178-271 59-150 (790)
301 KOG1514 Origin recognition com 95.9 0.41 8.9E-06 53.1 17.2 166 157-337 395-590 (767)
302 TIGR00064 ftsY signal recognit 95.9 0.072 1.6E-06 53.8 11.1 90 177-269 70-164 (272)
303 PF00485 PRK: Phosphoribulokin 95.9 0.0075 1.6E-07 57.9 3.9 26 181-206 1-26 (194)
304 PRK04328 hypothetical protein; 95.9 0.039 8.4E-07 55.2 9.0 41 178-220 22-62 (249)
305 PLN03150 hypothetical protein; 95.8 0.016 3.5E-07 66.0 6.9 80 550-631 441-532 (623)
306 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.8 0.033 7.2E-07 54.7 8.2 27 178-204 47-73 (224)
307 cd03217 ABC_FeS_Assembly ABC-t 95.8 0.026 5.6E-07 54.4 7.2 25 178-202 25-49 (200)
308 PRK09544 znuC high-affinity zi 95.8 0.038 8.3E-07 55.3 8.6 27 178-204 29-55 (251)
309 COG1102 Cmk Cytidylate kinase 95.8 0.027 5.8E-07 50.6 6.4 46 181-239 2-47 (179)
310 PTZ00301 uridine kinase; Provi 95.8 0.0092 2E-07 57.7 3.9 26 179-204 3-28 (210)
311 KOG1532 GTPase XAB1, interacts 95.8 0.012 2.6E-07 57.2 4.5 63 178-240 18-89 (366)
312 PRK12724 flagellar biosynthesi 95.8 0.035 7.5E-07 58.8 8.4 84 179-267 223-307 (432)
313 PRK08233 hypothetical protein; 95.8 0.0087 1.9E-07 56.7 3.7 26 179-204 3-28 (182)
314 cd02019 NK Nucleoside/nucleoti 95.8 0.0088 1.9E-07 46.4 3.0 23 181-203 1-23 (69)
315 PRK05480 uridine/cytidine kina 95.7 0.0097 2.1E-07 57.9 4.0 27 177-203 4-30 (209)
316 TIGR03740 galliderm_ABC gallid 95.7 0.043 9.4E-07 53.9 8.6 27 178-204 25-51 (223)
317 PRK14721 flhF flagellar biosyn 95.7 0.079 1.7E-06 56.6 10.9 88 178-268 190-278 (420)
318 PRK13531 regulatory ATPase Rav 95.7 0.015 3.3E-07 62.4 5.6 51 158-210 20-70 (498)
319 PF07728 AAA_5: AAA domain (dy 95.7 0.027 5.8E-07 50.7 6.5 43 182-229 2-44 (139)
320 cd01124 KaiC KaiC is a circadi 95.7 0.035 7.5E-07 52.8 7.5 37 182-220 2-38 (187)
321 PRK00889 adenylylsulfate kinas 95.6 0.051 1.1E-06 51.1 8.4 28 178-205 3-30 (175)
322 cd03283 ABC_MutS-like MutS-lik 95.6 0.024 5.3E-07 54.4 6.3 24 180-203 26-49 (199)
323 PRK07667 uridine kinase; Provi 95.6 0.019 4.1E-07 55.0 5.5 38 168-205 4-43 (193)
324 cd03213 ABCG_EPDR ABCG transpo 95.6 0.035 7.7E-07 53.2 7.3 26 178-203 34-59 (194)
325 PF13671 AAA_33: AAA domain; P 95.6 0.012 2.5E-07 53.3 3.7 24 181-204 1-24 (143)
326 cd03215 ABC_Carb_Monos_II This 95.6 0.03 6.5E-07 53.0 6.7 28 178-205 25-52 (182)
327 TIGR00235 udk uridine kinase. 95.6 0.012 2.5E-07 57.2 3.9 27 178-204 5-31 (207)
328 cd03232 ABC_PDR_domain2 The pl 95.6 0.024 5.3E-07 54.2 6.0 25 178-202 32-56 (192)
329 PF06309 Torsin: Torsin; Inte 95.6 0.17 3.6E-06 44.0 10.4 45 160-204 27-78 (127)
330 KOG0728 26S proteasome regulat 95.6 0.76 1.6E-05 44.4 15.6 155 161-336 150-331 (404)
331 cd01135 V_A-ATPase_B V/A-type 95.6 0.058 1.3E-06 53.8 8.7 94 178-271 68-178 (276)
332 PRK13537 nodulation ABC transp 95.6 0.037 8E-07 57.2 7.7 27 178-204 32-58 (306)
333 KOG0532 Leucine-rich repeat (L 95.6 0.0029 6.3E-08 67.5 -0.5 133 512-648 120-270 (722)
334 PRK05973 replicative DNA helic 95.6 0.062 1.3E-06 52.8 8.7 121 178-307 63-195 (237)
335 COG1066 Sms Predicted ATP-depe 95.5 0.047 1E-06 56.6 8.0 87 179-271 93-180 (456)
336 COG4555 NatA ABC-type Na+ tran 95.5 0.067 1.5E-06 50.0 8.2 30 177-206 26-55 (245)
337 COG1131 CcmA ABC-type multidru 95.5 0.036 7.8E-07 56.8 7.4 28 178-205 30-57 (293)
338 PRK06995 flhF flagellar biosyn 95.5 0.075 1.6E-06 57.7 10.0 88 179-269 256-344 (484)
339 COG0467 RAD55 RecA-superfamily 95.5 0.051 1.1E-06 54.8 8.3 41 178-220 22-62 (260)
340 PRK06762 hypothetical protein; 95.5 0.013 2.8E-07 54.6 3.7 25 179-203 2-26 (166)
341 PF06745 KaiC: KaiC; InterPro 95.5 0.036 7.8E-07 54.6 7.1 90 178-271 18-127 (226)
342 PTZ00494 tuzin-like protein; P 95.5 0.25 5.5E-06 51.9 13.1 170 150-337 363-545 (664)
343 PF13481 AAA_25: AAA domain; P 95.5 0.084 1.8E-06 50.4 9.5 91 179-271 32-153 (193)
344 PRK05439 pantothenate kinase; 95.5 0.11 2.3E-06 53.3 10.5 45 177-221 84-128 (311)
345 PRK08699 DNA polymerase III su 95.5 0.071 1.5E-06 55.3 9.4 26 179-204 21-46 (325)
346 COG1419 FlhF Flagellar GTP-bin 95.5 0.15 3.3E-06 53.3 11.6 102 164-269 184-291 (407)
347 KOG2120 SCF ubiquitin ligase, 95.4 0.0043 9.3E-08 61.0 0.2 94 554-649 252-374 (419)
348 COG0572 Udk Uridine kinase [Nu 95.4 0.014 3.1E-07 55.7 3.7 28 178-205 7-34 (218)
349 KOG0743 AAA+-type ATPase [Post 95.4 1.6 3.5E-05 46.2 18.8 130 180-338 236-385 (457)
350 cd02027 APSK Adenosine 5'-phos 95.4 0.066 1.4E-06 48.8 8.0 25 181-205 1-25 (149)
351 PF01583 APS_kinase: Adenylyls 95.4 0.03 6.4E-07 51.0 5.4 37 179-217 2-38 (156)
352 TIGR01360 aden_kin_iso1 adenyl 95.3 0.015 3.4E-07 55.3 3.8 26 178-203 2-27 (188)
353 COG1703 ArgK Putative periplas 95.3 0.037 8.1E-07 54.9 6.3 63 169-231 39-103 (323)
354 PRK13545 tagH teichoic acids e 95.3 0.074 1.6E-06 58.1 9.0 27 178-204 49-75 (549)
355 PF03308 ArgK: ArgK protein; 95.3 0.051 1.1E-06 53.2 6.9 63 167-229 15-79 (266)
356 PRK03839 putative kinase; Prov 95.3 0.016 3.4E-07 54.9 3.5 24 181-204 2-25 (180)
357 KOG0924 mRNA splicing factor A 95.2 0.048 1E-06 59.4 7.3 115 179-307 371-512 (1042)
358 PRK04040 adenylate kinase; Pro 95.2 0.018 4E-07 54.7 3.8 26 179-204 2-27 (188)
359 PF03205 MobB: Molybdopterin g 95.2 0.021 4.6E-07 51.3 3.9 39 180-219 1-39 (140)
360 PF12775 AAA_7: P-loop contain 95.2 0.01 2.3E-07 59.9 2.1 90 168-271 23-112 (272)
361 PRK06851 hypothetical protein; 95.2 0.38 8.2E-06 50.4 13.6 43 177-220 212-254 (367)
362 TIGR02655 circ_KaiC circadian 95.2 0.037 8.1E-07 61.0 6.5 125 178-306 20-168 (484)
363 TIGR02030 BchI-ChlI magnesium 95.1 0.034 7.4E-07 57.8 5.8 47 157-203 3-49 (337)
364 PRK12597 F0F1 ATP synthase sub 95.1 0.07 1.5E-06 57.6 8.2 93 178-271 142-249 (461)
365 KOG0729 26S proteasome regulat 95.1 0.13 2.9E-06 49.8 9.1 92 158-270 177-281 (435)
366 TIGR01420 pilT_fam pilus retra 95.1 0.026 5.6E-07 59.3 4.8 113 177-308 120-233 (343)
367 cd03282 ABC_MSH4_euk MutS4 hom 95.1 0.038 8.2E-07 53.3 5.6 26 178-203 28-53 (204)
368 COG3640 CooC CO dehydrogenase 95.1 0.047 1E-06 52.3 6.0 51 181-239 2-52 (255)
369 PRK00625 shikimate kinase; Pro 95.1 0.019 4.1E-07 53.7 3.3 24 181-204 2-25 (173)
370 KOG0733 Nuclear AAA ATPase (VC 95.0 0.072 1.6E-06 57.7 7.8 139 178-337 544-693 (802)
371 PRK13536 nodulation factor exp 95.0 0.077 1.7E-06 55.6 8.2 27 178-204 66-92 (340)
372 cd02023 UMPK Uridine monophosp 95.0 0.016 3.4E-07 55.8 2.8 23 181-203 1-23 (198)
373 TIGR00150 HI0065_YjeE ATPase, 95.0 0.047 1E-06 48.3 5.5 41 165-205 6-48 (133)
374 COG4618 ArpD ABC-type protease 95.0 0.16 3.5E-06 54.1 10.2 27 178-204 361-387 (580)
375 TIGR03881 KaiC_arch_4 KaiC dom 95.0 0.21 4.6E-06 49.2 10.9 41 178-220 19-59 (229)
376 COG0464 SpoVK ATPases of the A 95.0 0.12 2.6E-06 57.5 10.1 139 178-337 275-424 (494)
377 PF08433 KTI12: Chromatin asso 95.0 0.033 7.1E-07 56.1 5.1 26 180-205 2-27 (270)
378 PRK15439 autoinducer 2 ABC tra 95.0 0.12 2.7E-06 57.6 10.1 27 178-204 36-62 (510)
379 KOG1259 Nischarin, modulator o 95.0 0.0061 1.3E-07 59.9 -0.2 98 551-654 284-389 (490)
380 PRK10751 molybdopterin-guanine 95.0 0.028 6E-07 52.2 4.0 29 178-206 5-33 (173)
381 cd01122 GP4d_helicase GP4d_hel 95.0 0.23 4.9E-06 50.4 11.2 52 179-233 30-81 (271)
382 TIGR02322 phosphon_PhnN phosph 95.0 0.022 4.7E-07 53.8 3.5 25 180-204 2-26 (179)
383 COG1224 TIP49 DNA helicase TIP 94.9 0.12 2.6E-06 52.5 8.6 55 156-210 37-96 (450)
384 PRK11823 DNA repair protein Ra 94.9 0.056 1.2E-06 58.8 7.0 84 179-271 80-168 (446)
385 TIGR00416 sms DNA repair prote 94.9 0.071 1.5E-06 58.1 7.6 85 178-271 93-182 (454)
386 COG1428 Deoxynucleoside kinase 94.9 0.049 1.1E-06 51.4 5.5 47 179-230 4-50 (216)
387 PRK10416 signal recognition pa 94.9 0.41 8.9E-06 49.5 12.8 38 178-217 113-150 (318)
388 PF03215 Rad17: Rad17 cell cyc 94.9 0.041 8.9E-07 60.6 5.8 60 153-216 14-78 (519)
389 COG2274 SunT ABC-type bacterio 94.8 0.13 2.9E-06 58.9 9.9 28 178-205 498-525 (709)
390 cd00544 CobU Adenosylcobinamid 94.8 0.1 2.2E-06 48.5 7.5 81 182-269 2-83 (169)
391 COG3910 Predicted ATPase [Gene 94.8 0.095 2.1E-06 48.4 7.0 136 178-322 36-203 (233)
392 cd02024 NRK1 Nicotinamide ribo 94.8 0.021 4.5E-07 54.0 2.9 23 181-203 1-23 (187)
393 TIGR00390 hslU ATP-dependent p 94.8 0.086 1.9E-06 55.7 7.6 48 158-205 12-73 (441)
394 TIGR01359 UMP_CMP_kin_fam UMP- 94.8 0.021 4.4E-07 54.2 2.9 24 181-204 1-24 (183)
395 TIGR03575 selen_PSTK_euk L-ser 94.8 0.13 2.7E-06 53.5 8.8 24 182-205 2-25 (340)
396 COG2607 Predicted ATPase (AAA+ 94.8 0.4 8.7E-06 46.2 11.3 52 155-206 57-112 (287)
397 TIGR03305 alt_F1F0_F1_bet alte 94.8 0.1 2.2E-06 56.0 8.3 93 178-271 137-244 (449)
398 PRK13765 ATP-dependent proteas 94.8 0.064 1.4E-06 60.5 7.0 79 155-237 28-106 (637)
399 PF00910 RNA_helicase: RNA hel 94.8 0.023 5.1E-07 48.5 2.8 25 182-206 1-25 (107)
400 PRK13409 putative ATPase RIL; 94.8 0.094 2E-06 59.3 8.4 123 178-308 364-517 (590)
401 cd00561 CobA_CobO_BtuR ATP:cor 94.7 0.092 2E-06 48.0 6.8 123 180-307 3-140 (159)
402 PRK05342 clpX ATP-dependent pr 94.7 0.086 1.9E-06 56.5 7.7 47 158-204 71-133 (412)
403 cd03227 ABC_Class2 ABC-type Cl 94.7 0.15 3.2E-06 47.3 8.4 24 180-203 22-45 (162)
404 PRK00131 aroK shikimate kinase 94.7 0.03 6.5E-07 52.5 3.8 26 179-204 4-29 (175)
405 PRK06217 hypothetical protein; 94.7 0.025 5.4E-07 53.7 3.2 25 181-205 3-27 (183)
406 PRK13407 bchI magnesium chelat 94.7 0.046 1E-06 56.7 5.4 50 154-203 4-53 (334)
407 PRK06731 flhF flagellar biosyn 94.7 0.24 5.2E-06 49.8 10.3 89 178-269 74-164 (270)
408 TIGR02655 circ_KaiC circadian 94.7 0.16 3.6E-06 56.0 10.0 87 178-269 262-363 (484)
409 PRK07132 DNA polymerase III su 94.7 0.72 1.6E-05 47.2 13.9 144 167-335 5-161 (299)
410 COG0488 Uup ATPase components 94.7 0.098 2.1E-06 57.8 8.1 28 178-205 28-55 (530)
411 PF07726 AAA_3: ATPase family 94.7 0.02 4.3E-07 49.8 2.2 25 182-206 2-26 (131)
412 cd00227 CPT Chloramphenicol (C 94.6 0.032 6.8E-07 52.5 3.7 26 179-204 2-27 (175)
413 KOG4341 F-box protein containi 94.6 0.015 3.2E-07 60.0 1.5 38 551-588 320-357 (483)
414 COG1124 DppF ABC-type dipeptid 94.6 0.033 7.2E-07 53.7 3.7 28 178-205 32-59 (252)
415 cd02028 UMPK_like Uridine mono 94.6 0.027 5.9E-07 53.1 3.2 25 181-205 1-25 (179)
416 PF00625 Guanylate_kin: Guanyl 94.6 0.045 9.7E-07 51.9 4.7 38 179-218 2-39 (183)
417 PRK10463 hydrogenase nickel in 94.6 0.061 1.3E-06 54.2 5.8 35 172-206 97-131 (290)
418 PRK09280 F0F1 ATP synthase sub 94.6 0.22 4.8E-06 53.6 10.3 93 178-271 143-250 (463)
419 PLN02165 adenylate isopentenyl 94.6 0.043 9.3E-07 56.3 4.7 30 175-204 39-68 (334)
420 CHL00081 chlI Mg-protoporyphyr 94.6 0.041 8.9E-07 57.2 4.7 49 156-204 15-63 (350)
421 PF13245 AAA_19: Part of AAA d 94.6 0.079 1.7E-06 41.9 5.2 26 178-203 9-35 (76)
422 TIGR01650 PD_CobS cobaltochela 94.6 0.14 3.1E-06 52.5 8.4 62 157-225 44-105 (327)
423 PRK09435 membrane ATPase/prote 94.6 0.39 8.4E-06 49.8 11.7 38 169-206 44-83 (332)
424 TIGR00764 lon_rel lon-related 94.6 0.096 2.1E-06 59.2 7.9 76 157-236 17-92 (608)
425 KOG0735 AAA+-type ATPase [Post 94.6 1.3 2.9E-05 49.3 15.9 71 180-271 702-772 (952)
426 KOG0727 26S proteasome regulat 94.6 0.24 5.1E-06 47.8 9.1 74 177-271 187-260 (408)
427 KOG0736 Peroxisome assembly fa 94.5 0.12 2.5E-06 57.8 8.0 94 158-272 672-777 (953)
428 PRK13768 GTPase; Provisional 94.5 0.2 4.4E-06 50.1 9.2 36 180-217 3-38 (253)
429 COG0003 ArsA Predicted ATPase 94.5 0.077 1.7E-06 54.6 6.3 49 179-229 2-50 (322)
430 cd02020 CMPK Cytidine monophos 94.5 0.029 6.4E-07 50.8 3.0 24 181-204 1-24 (147)
431 PHA02774 E1; Provisional 94.5 0.18 3.9E-06 55.3 9.2 52 165-220 419-471 (613)
432 PRK13949 shikimate kinase; Pro 94.5 0.032 6.9E-07 52.1 3.2 24 181-204 3-26 (169)
433 COG3854 SpoIIIAA ncharacterize 94.4 0.1 2.2E-06 49.7 6.4 120 170-307 128-255 (308)
434 TIGR03263 guanyl_kin guanylate 94.4 0.029 6.3E-07 53.0 3.0 24 180-203 2-25 (180)
435 TIGR00073 hypB hydrogenase acc 94.4 0.044 9.6E-07 53.1 4.3 32 173-204 16-47 (207)
436 TIGR00176 mobB molybdopterin-g 94.4 0.036 7.7E-07 50.9 3.4 26 181-206 1-26 (155)
437 cd02021 GntK Gluconate kinase 94.4 0.029 6.4E-07 51.2 2.9 23 181-203 1-23 (150)
438 COG1763 MobB Molybdopterin-gua 94.4 0.041 9E-07 50.3 3.7 29 179-207 2-30 (161)
439 PRK00300 gmk guanylate kinase; 94.4 0.036 7.9E-07 53.6 3.6 26 178-203 4-29 (205)
440 cd01125 repA Hexameric Replica 94.4 0.22 4.7E-06 49.5 9.2 54 181-234 3-67 (239)
441 PRK03846 adenylylsulfate kinas 94.4 0.061 1.3E-06 51.7 5.0 29 177-205 22-50 (198)
442 TIGR02788 VirB11 P-type DNA tr 94.4 0.039 8.5E-07 57.0 4.0 112 178-307 143-255 (308)
443 TIGR02902 spore_lonB ATP-depen 94.4 0.049 1.1E-06 60.7 4.9 49 156-204 63-111 (531)
444 PF03193 DUF258: Protein of un 94.3 0.063 1.4E-06 49.1 4.7 34 167-203 26-59 (161)
445 PF05970 PIF1: PIF1-like helic 94.3 0.11 2.4E-06 55.1 7.3 103 164-271 7-114 (364)
446 COG0563 Adk Adenylate kinase a 94.3 0.036 7.8E-07 52.0 3.2 25 181-205 2-26 (178)
447 TIGR01039 atpD ATP synthase, F 94.3 0.35 7.7E-06 51.9 10.9 93 178-271 142-249 (461)
448 PF06068 TIP49: TIP49 C-termin 94.3 0.078 1.7E-06 54.6 5.7 53 157-209 23-80 (398)
449 PF13479 AAA_24: AAA domain 94.3 0.15 3.2E-06 49.7 7.6 31 180-220 4-34 (213)
450 PRK08149 ATP synthase SpaL; Va 94.3 0.16 3.4E-06 54.4 8.2 90 178-271 150-253 (428)
451 PRK05917 DNA polymerase III su 94.3 0.95 2.1E-05 45.8 13.4 39 166-204 5-44 (290)
452 PRK12678 transcription termina 94.3 0.087 1.9E-06 57.4 6.3 93 178-271 415-515 (672)
453 KOG3347 Predicted nucleotide k 94.2 0.043 9.3E-07 48.5 3.2 68 180-257 8-75 (176)
454 PF08477 Miro: Miro-like prote 94.2 0.04 8.7E-07 47.8 3.2 24 182-205 2-25 (119)
455 TIGR00382 clpX endopeptidase C 94.2 0.17 3.6E-06 54.1 8.4 47 158-204 77-141 (413)
456 PRK06002 fliI flagellum-specif 94.2 0.1 2.2E-06 56.0 6.7 91 178-271 164-266 (450)
457 PRK08972 fliI flagellum-specif 94.2 0.19 4.1E-06 53.7 8.7 90 178-271 161-264 (444)
458 cd00984 DnaB_C DnaB helicase C 94.2 0.46 1E-05 47.2 11.3 50 179-231 13-62 (242)
459 PRK14530 adenylate kinase; Pro 94.2 0.041 8.8E-07 53.7 3.6 25 180-204 4-28 (215)
460 COG4886 Leucine-rich repeat (L 94.2 0.042 9.1E-07 59.2 4.0 151 513-670 116-285 (394)
461 PF00006 ATP-synt_ab: ATP synt 94.2 0.24 5.2E-06 48.0 8.8 88 179-270 15-116 (215)
462 cd00820 PEPCK_HprK Phosphoenol 94.2 0.042 9.2E-07 46.4 3.1 22 179-200 15-36 (107)
463 cd00071 GMPK Guanosine monopho 94.2 0.034 7.3E-07 49.9 2.7 23 181-203 1-23 (137)
464 PTZ00185 ATPase alpha subunit; 94.2 0.4 8.7E-06 51.9 11.0 94 178-271 188-301 (574)
465 PRK08927 fliI flagellum-specif 94.2 0.27 5.9E-06 52.7 9.8 90 178-271 157-260 (442)
466 PRK14527 adenylate kinase; Pro 94.2 0.045 9.7E-07 52.3 3.7 28 178-205 5-32 (191)
467 PRK13947 shikimate kinase; Pro 94.2 0.04 8.6E-07 51.6 3.2 25 181-205 3-27 (171)
468 PF02374 ArsA_ATPase: Anion-tr 94.2 0.087 1.9E-06 54.2 5.9 46 180-227 2-47 (305)
469 PF13086 AAA_11: AAA domain; P 94.1 0.09 2E-06 51.7 5.9 50 181-230 19-73 (236)
470 PF03266 NTPase_1: NTPase; In 94.1 0.044 9.5E-07 51.0 3.4 24 182-205 2-25 (168)
471 PRK10078 ribose 1,5-bisphospho 94.1 0.038 8.3E-07 52.6 3.0 24 180-203 3-26 (186)
472 PF03029 ATP_bind_1: Conserved 94.1 0.046 9.9E-07 54.1 3.7 32 184-217 1-32 (238)
473 KOG1859 Leucine-rich repeat pr 94.1 0.021 4.5E-07 62.9 1.3 14 550-563 108-121 (1096)
474 PF12061 DUF3542: Protein of u 94.1 0.21 4.5E-06 49.7 7.8 80 33-122 311-391 (402)
475 PRK14737 gmk guanylate kinase; 94.1 0.047 1E-06 51.8 3.5 26 178-203 3-28 (186)
476 PRK15429 formate hydrogenlyase 94.0 0.11 2.4E-06 60.2 7.2 61 157-219 375-437 (686)
477 cd01129 PulE-GspE PulE/GspE Th 94.0 0.083 1.8E-06 53.2 5.4 115 171-307 72-186 (264)
478 PRK13409 putative ATPase RIL; 94.0 0.15 3.3E-06 57.6 8.1 27 178-204 98-124 (590)
479 PRK05057 aroK shikimate kinase 94.0 0.052 1.1E-06 50.8 3.6 26 179-204 4-29 (172)
480 cd00464 SK Shikimate kinase (S 94.0 0.048 1E-06 49.9 3.3 23 182-204 2-24 (154)
481 KOG2170 ATPase of the AAA+ sup 94.0 0.23 4.9E-06 49.4 8.0 98 160-271 84-190 (344)
482 PF13604 AAA_30: AAA domain; P 94.0 0.16 3.6E-06 48.6 7.1 39 168-206 7-45 (196)
483 TIGR01313 therm_gnt_kin carboh 93.9 0.04 8.6E-07 51.1 2.7 22 182-203 1-22 (163)
484 cd03284 ABC_MutS1 MutS1 homolo 93.9 0.099 2.1E-06 51.0 5.5 22 180-201 31-52 (216)
485 TIGR01040 V-ATPase_V1_B V-type 93.9 0.2 4.3E-06 53.7 8.0 94 178-271 140-259 (466)
486 PRK14529 adenylate kinase; Pro 93.9 0.24 5.2E-06 48.2 8.1 82 182-269 3-86 (223)
487 PF01078 Mg_chelatase: Magnesi 93.9 0.11 2.4E-06 49.5 5.5 44 157-202 2-45 (206)
488 PRK13695 putative NTPase; Prov 93.9 0.082 1.8E-06 49.6 4.8 25 181-205 2-26 (174)
489 PRK05201 hslU ATP-dependent pr 93.9 0.2 4.4E-06 53.0 7.9 48 158-205 15-76 (443)
490 cd01672 TMPK Thymidine monopho 93.9 0.16 3.6E-06 48.6 7.0 25 181-205 2-26 (200)
491 COG2019 AdkA Archaeal adenylat 93.9 0.058 1.3E-06 48.7 3.4 25 179-203 4-28 (189)
492 PF00158 Sigma54_activat: Sigm 93.9 0.24 5.2E-06 46.1 7.7 57 160-218 1-59 (168)
493 PRK06936 type III secretion sy 93.9 0.28 6.1E-06 52.5 9.1 90 178-271 161-264 (439)
494 PF00005 ABC_tran: ABC transpo 93.8 0.046 9.9E-07 49.0 2.9 27 179-205 11-37 (137)
495 TIGR03880 KaiC_arch_3 KaiC dom 93.8 0.32 6.9E-06 47.8 9.1 40 179-220 16-55 (224)
496 PRK11174 cysteine/glutathione 93.8 0.2 4.3E-06 57.1 8.7 26 178-203 375-400 (588)
497 smart00534 MUTSac ATPase domai 93.8 0.021 4.6E-07 54.3 0.6 22 181-202 1-22 (185)
498 PRK12339 2-phosphoglycerate ki 93.8 0.061 1.3E-06 51.4 3.8 25 179-203 3-27 (197)
499 KOG1051 Chaperone HSP104 and r 93.8 0.4 8.7E-06 55.5 10.8 104 158-272 562-673 (898)
500 PRK13975 thymidylate kinase; P 93.8 0.058 1.3E-06 51.8 3.6 26 180-205 3-28 (196)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-65 Score=580.95 Aligned_cols=550 Identities=20% Similarity=0.266 Sum_probs=405.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhHHHhHHHH-----------------hhhcc
Q 036977 41 LKDQVKQLGYKRETVQQPVNHARLQGDELYEGVTDWLHSVDEFISEGVAKSIIDDEER-----------------AKKFC 103 (693)
Q Consensus 41 l~~~l~~l~~~l~~i~~~l~~ae~~~~~~~~~~~~wl~~l~~~~y~~~~ed~ld~~~~-----------------~~~~~ 103 (693)
.++.+..|+..+..++.+++|++.++.. ...+..|.+.+++++|+ ++|+++.+.- .+.-|
T Consensus 26 ~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~--~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c 102 (889)
T KOG4658|consen 26 KDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYL--AEDIIWLFLVEEIERKANDLLSTRSVERQRLC 102 (889)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHh
Confidence 3456666666667777777888887644 78899999999999999 9999988641 11222
Q ss_pred ccCC-CCchhhhcHHHHHHHHHHHHHHHHhcCCCCCccccCC-CCCCCCCCCCCCCccccchHHHHHHHHHHHhcCCceE
Q 036977 104 FKGL-CPNLMSRYKLSKQAAKAAEAAAGLVGKGNFSNVSYRP-TPKSTGLNDGKDNEAFDSRMKVFQDVMEALKDDKLNI 181 (693)
Q Consensus 104 ~~~~-~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gR~~~~~~l~~~L~~~~~~v 181 (693)
+..+ ..+...-+.+++++.++...++.+...+.++.+...+ +++.....+-.+... +|.+..++++.+.|.+++.++
T Consensus 103 ~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~i 181 (889)
T KOG4658|consen 103 LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGI 181 (889)
T ss_pred hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCE
Confidence 2222 2234445666777777777777775555566555422 222222222223333 999999999999999888899
Q ss_pred EEEEecCCCcHHHHHHHHHHHhh-ccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHHhcC
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKVM-EDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL--NDSIHHRASRLRERLKQE 258 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~L~~~ 258 (693)
++|+||||+||||||+.++++.. ++.+|+.++||+||+.++...++++|+..++..... ....++.+..+.+.|+.
T Consensus 182 v~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~- 260 (889)
T KOG4658|consen 182 VGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEG- 260 (889)
T ss_pred EEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhcc-
Confidence 99999999999999999999998 899999999999999999999999999999875443 13346788899999998
Q ss_pred CcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhh
Q 036977 259 KRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLE 338 (693)
Q Consensus 259 k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 338 (693)
+||+|||||||+..+|+.++.|+|. ..+||+|++|||++.|+...|+....+++..|+++|||+||++.++.
T Consensus 261 krfllvLDDIW~~~dw~~I~~~~p~--------~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~ 332 (889)
T KOG4658|consen 261 KRFLLVLDDIWEEVDWDKIGVPFPS--------RENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGP 332 (889)
T ss_pred CceEEEEecccccccHHhcCCCCCC--------ccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcc
Confidence 9999999999999999999999998 78899999999999998766888889999999999999999999985
Q ss_pred hhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc----------------c---ccccccc------cccccccc
Q 036977 339 ISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE----------------W---LPELTSF------ANTGQIHS 393 (693)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa----------------w---l~~~~~~------~~~~~i~~ 393 (693)
.. ....+.++++|++|+++|+|+||| | .+.+.+. +..+.+++
T Consensus 333 ~~-------------~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~ 399 (889)
T KOG4658|consen 333 NT-------------LGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILP 399 (889)
T ss_pred cc-------------ccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHH
Confidence 51 113344899999999999999999 6 2222221 23568999
Q ss_pred chhccccCchhHhhhhhhhcccccCCC---Ccchhhhccc-CCCccccc-----ccCcchhhhhhhhcCCCCchhhhccc
Q 036977 394 DLVVEFPSLLNLEIHGCNNMLRFISTS---SPADTLHSEM-QSPPLFDE-----KVGIPSSLVNLKVSGCPKLEEIVGHV 464 (693)
Q Consensus 394 ~l~~sy~~L~~~~lk~cfl~~~~fp~~---~~~~Li~lw~-~g~~~~~~-----~~~~~~~l~~L~~~~l~~~~~~~~~~ 464 (693)
++.+||++||+ ++|.||+|||+||++ ....|+.+|+ |||+...+ ++.+..|+++|+.++++..+.
T Consensus 400 iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~----- 473 (889)
T KOG4658|consen 400 ILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER----- 473 (889)
T ss_pred hhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc-----
Confidence 99999999995 999999999999999 7899999999 99886522 678999999999999994433
Q ss_pred cccccccccccCCccEEEEcCCcccccccccccCC-----CCCcccccc--------chhhcccccccccccCccccccc
Q 036977 465 GQEVKENRIAFSKLKVLILDDLPRLTSFLSKKEEG-----EPHHWEGNL--------NSTIQKCYEEMIGFRDIKDLQLS 531 (693)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~hdli~~~~~~~~~~~~-----~~~~~~~~~--------~~~~~~l~~l~~~~~~l~~l~~~ 531 (693)
...+..+++|||++|++| ..++. .++.+.... .......+++++.++.+.+++..
T Consensus 474 ---------~~~~~~~~kmHDvvRe~a---l~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~ 541 (889)
T KOG4658|consen 474 ---------DEGRKETVKMHDVVREMA---LWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS 541 (889)
T ss_pred ---------cccceeEEEeeHHHHHHH---HHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCC
Confidence 113455999999999999 77776 444333321 11223445555555555443222
Q ss_pred cCCCcccccCCCCCCcccccCcceeeecCCCC-CCcCCCchhhcCCCCCCEEEecCCCCCccccccceeccCCCCccccc
Q 036977 532 HFPRLQEIWHGQALPVSFFNNLRELVVDDCTN-MSSAIPANLLRCLNNLRYLEVRNCDSLEEVLHLEELNAKEEHIGPLF 610 (693)
Q Consensus 532 ~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~-~~~~~~~~~l~~L~~L~~L~l~~c~~l~~l~~L~~L~l~~~~l~~~~ 610 (693)
. ..++|++|-+.+-.. +.. .+...+..++.|++|++++|.++.+||. .+
T Consensus 542 ~----------------~~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~~LP~-------------~I 591 (889)
T KOG4658|consen 542 S----------------ENPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLSKLPS-------------SI 591 (889)
T ss_pred C----------------CCCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccCcCCh-------------HH
Confidence 1 123677777776432 221 2233477899999999999887775543 45
Q ss_pred CCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccccccccceee
Q 036977 611 PRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISNSTSVLHMT 665 (693)
Q Consensus 611 ~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~~~~l~~l~ 665 (693)
+.|-+||+|++++ +.+..||.++++|..|.+|++..+..+..+|.....|.+|+
T Consensus 592 ~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 592 GELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred hhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 5566666666665 55666666666666666666666555555544333333333
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-43 Score=424.71 Aligned_cols=459 Identities=20% Similarity=0.253 Sum_probs=307.4
Q ss_pred CCccccchHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEe---cCC----------
Q 036977 156 DNEAFDSRMKVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEV---TQN---------- 220 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~---------- 220 (693)
+.+.++||+..++++..++. .+++++|+||||||+||||||+++|+..... |++.+|+.- +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhhccccccc
Confidence 45679999999999998874 4578999999999999999999999987654 998887742 111
Q ss_pred -CC-hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEE
Q 036977 221 -PD-PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTI 298 (693)
Q Consensus 221 -~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I 298 (693)
.+ ...++++++..+......... ....+++.+++ +|+||||||||+..+|+.+...... .++|++|
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~~-krvLLVLDdv~~~~~l~~L~~~~~~--------~~~GsrI 327 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLKH-RKVLIFIDDLDDQDVLDALAGQTQW--------FGSGSRI 327 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHhC-CeEEEEEeCCCCHHHHHHHHhhCcc--------CCCCcEE
Confidence 01 123444555444222111010 12456777887 8999999999999999988765544 6789999
Q ss_pred EEecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc-
Q 036977 299 ILTSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE- 377 (693)
Q Consensus 299 ivTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa- 377 (693)
|||||++.++.. ++..++|+++.++.++||+||.++||+.. .+++.+.+++.+|+++|+|+|||
T Consensus 328 IiTTrd~~vl~~-~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--------------~~~~~~~~l~~~iv~~c~GLPLAl 392 (1153)
T PLN03210 328 IVITKDKHFLRA-HGIDHIYEVCLPSNELALEMFCRSAFKKN--------------SPPDGFMELASEVALRAGNLPLGL 392 (1153)
T ss_pred EEEeCcHHHHHh-cCCCeEEEecCCCHHHHHHHHHHHhcCCC--------------CCcHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999743 55678999999999999999999998540 13446788999999999999999
Q ss_pred --------------c---cccccccccccccccchhccccCchhHhhhhhhhcccccCCCCcchhhhccc-CCCcccccc
Q 036977 378 --------------W---LPELTSFANTGQIHSDLVVEFPSLLNLEIHGCNNMLRFISTSSPADTLHSEM-QSPPLFDEK 439 (693)
Q Consensus 378 --------------w---l~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~~~fp~~~~~~Li~lw~-~g~~~~~~~ 439 (693)
| +.++.. ..++.+..+|++||+.|++...|.||+++|.|+.+...+.+..|+ .+..
T Consensus 393 ~vlgs~L~~k~~~~W~~~l~~L~~-~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~----- 466 (1153)
T PLN03210 393 NVLGSYLRGRDKEDWMDMLPRLRN-GLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDL----- 466 (1153)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHh-CccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCC-----
Confidence 6 333332 235679999999999998645899999999999884445566666 2211
Q ss_pred cCcchhhhhhhhcCCCCchhhhccccccccccccccCCccEEEEcCCcccccccccccCCCCC-------ccccc-----
Q 036977 440 VGIPSSLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKVLILDDLPRLTSFLSKKEEGEPH-------HWEGN----- 507 (693)
Q Consensus 440 ~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~hdli~~~~~~~~~~~~~~~-------~~~~~----- 507 (693)
.++..++.|+++++++... + .++|||++|+++ +.++..+. +....
T Consensus 467 -~~~~~l~~L~~ksLi~~~~-----~--------------~~~MHdLl~~~~---r~i~~~~~~~~~~r~~l~~~~di~~ 523 (1153)
T PLN03210 467 -DVNIGLKNLVDKSLIHVRE-----D--------------IVEMHSLLQEMG---KEIVRAQSNEPGEREFLVDAKDICD 523 (1153)
T ss_pred -CchhChHHHHhcCCEEEcC-----C--------------eEEhhhHHHHHH---HHHHHhhcCCCCcceeEeCHHHHHH
Confidence 2334589999999995432 1 789999999987 54432210 00000
Q ss_pred ----c-------------------------ch------------------------------------------------
Q 036977 508 ----L-------------------------NS------------------------------------------------ 510 (693)
Q Consensus 508 ----~-------------------------~~------------------------------------------------ 510 (693)
. ..
T Consensus 524 vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~ 603 (1153)
T PLN03210 524 VLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC 603 (1153)
T ss_pred HHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC
Confidence 0 00
Q ss_pred -----hhcccccccccccCcccccccc--CCCccccc-----CCCCCCc-ccccCcceeeecCCCCCCcCCCchhhcCCC
Q 036977 511 -----TIQKCYEEMIGFRDIKDLQLSH--FPRLQEIW-----HGQALPV-SFFNNLRELVVDDCTNMSSAIPANLLRCLN 577 (693)
Q Consensus 511 -----~~~~l~~l~~~~~~l~~l~~~~--~~~L~~~~-----~~~~~~~-~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~ 577 (693)
.+.++..|.+.++.++.++.+. +++|+.+. ....+|. +.+++|+.|.+.+|..+. .+|..+.+|+
T Consensus 604 lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~--~lp~si~~L~ 681 (1153)
T PLN03210 604 MPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV--ELPSSIQYLN 681 (1153)
T ss_pred CCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc--ccchhhhccC
Confidence 0112222333333333333221 33333111 1123332 235678888888887765 4466777777
Q ss_pred CCCEEEecCCCCCcc------ccccceeccCC---------------------CCccccc-----C--------------
Q 036977 578 NLRYLEVRNCDSLEE------VLHLEELNAKE---------------------EHIGPLF-----P-------------- 611 (693)
Q Consensus 578 ~L~~L~l~~c~~l~~------l~~L~~L~l~~---------------------~~l~~~~-----~-------------- 611 (693)
+|+.|++++|.+++. +++|++|++++ +.+..+. .
T Consensus 682 ~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 682 KLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred CCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhh
Confidence 888888877765543 23445554444 2221110 0
Q ss_pred --------------CCCCcCEeecCCCcCcccccccccCCCCcCEEeccccccccccccc--ccccceeeccccccccc
Q 036977 612 --------------RLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISN--STSVLHMTADNKEAQKL 674 (693)
Q Consensus 612 --------------~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~--~~~l~~l~~~~~~~~~~ 674 (693)
..++|+.|+|++|+.+..+|.++++|++|++|++++|++|+.+|.. +.+|..|.+++|.....
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence 1235677777777777788888888888888888888888888874 46677888888766543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.5e-36 Score=312.89 Aligned_cols=250 Identities=25% Similarity=0.391 Sum_probs=198.8
Q ss_pred hHHHHHHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCC-
Q 036977 163 RMKVFQDVMEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFD- 239 (693)
Q Consensus 163 R~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~- 239 (693)
|+.++++|.+.|.+ ++.++|+|+||||+||||||+.++++...+.+|+.++|++++...+..+++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 789999999999999999999999997777889999999999999999999999999988743
Q ss_pred --CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhhhhhcCCCcE
Q 036977 240 --LNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLCIDMNSQKI 317 (693)
Q Consensus 240 --~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~~~~~~~~~ 317 (693)
...+.+.....+.+.|.+ +++||||||||+...|+.+..+++. ...|++||||||+..++.........
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~--------~~~~~kilvTTR~~~v~~~~~~~~~~ 151 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPS--------FSSGSKILVTTRDRSVAGSLGGTDKV 151 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HC--------HHSS-EEEEEESCGGGGTTHHSCEEE
T ss_pred cccccccccccccchhhhcc-ccceeeeeeeccccccccccccccc--------cccccccccccccccccccccccccc
Confidence 346788899999999998 7999999999999999888777766 67799999999999886543333679
Q ss_pred EEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc----------------c---
Q 036977 318 FWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE----------------W--- 378 (693)
Q Consensus 318 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa----------------w--- 378 (693)
+++++|+.++|++||.+.++... ....+...+.+.+|+++|+|+||| |
T Consensus 152 ~~l~~L~~~ea~~L~~~~~~~~~-------------~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~ 218 (287)
T PF00931_consen 152 IELEPLSEEEALELFKKRAGRKE-------------SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEA 218 (287)
T ss_dssp EECSS--HHHHHHHHHHHHTSHS-----------------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHH
T ss_pred ccccccccccccccccccccccc-------------cccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999998550 113455678999999999999999 4
Q ss_pred ccccccc-----ccccccccchhccccCchhHhhhhhhhcccccCCC---Ccchhhhccc-CCCcc
Q 036977 379 LPELTSF-----ANTGQIHSDLVVEFPSLLNLEIHGCNNMLRFISTS---SPADTLHSEM-QSPPL 435 (693)
Q Consensus 379 l~~~~~~-----~~~~~i~~~l~~sy~~L~~~~lk~cfl~~~~fp~~---~~~~Li~lw~-~g~~~ 435 (693)
+...... .....+..++.+||+.||+ ++|.||+||++||.+ +...++++|+ +|++.
T Consensus 219 ~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 219 LEELENSLRESRDYDRSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccccccccccccccccccccceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 1111111 1346788999999999998 999999999999999 6789999999 88764
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.15 E-value=5.7e-10 Score=133.88 Aligned_cols=278 Identities=13% Similarity=0.072 Sum_probs=168.8
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecC-CCChHHHHHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQ-NPDPQKIQDKLAS 232 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~ 232 (693)
|.....++-|...++.+-. ....+++.|+|++|.||||++...... ++.++|+++.. ..++..+...++.
T Consensus 10 p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 3445567888876666543 235789999999999999999998853 23689999964 4456666677776
Q ss_pred HhCCCCCC-------------CCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCccCc--c-ccCCCCCCcccccccccCCC
Q 036977 233 DLGMKFDL-------------NDSIHHRASRLRERLKQ-EKRVLIILDNIWTKLEL--D-AVGIPSGDVDEKDREDDQRR 295 (693)
Q Consensus 233 ~l~~~~~~-------------~~~~~~~~~~l~~~L~~-~k~~LlVlDdv~~~~~~--~-~l~~~~~~~~~~~~~~~~~~ 295 (693)
.++..... ..+.......+...+.. +.+++||+||++..+.- . .+..-+.. ...+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~--------~~~~ 152 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH--------QPEN 152 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh--------CCCC
Confidence 66421111 01223334444444443 47899999999865321 1 11111111 3456
Q ss_pred eEEEEecCChhhhh--hhcCCCcEEEcC----CCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhh
Q 036977 296 CTIILTSRSRDLLC--IDMNSQKIFWID----ALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFP 369 (693)
Q Consensus 296 ~~IivTtR~~~v~~--~~~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 369 (693)
.++|+|||...-.. ..........+. +|+.+|+.++|....+.. -..+....|.+
T Consensus 153 ~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-------------------~~~~~~~~l~~ 213 (903)
T PRK04841 153 LTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-------------------IEAAESSRLCD 213 (903)
T ss_pred eEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-------------------CCHHHHHHHHH
Confidence 78889999853211 000112244555 899999999998765422 12356788999
Q ss_pred hcCCCcccc------cccccccc----------cccccccchhc-cccCchhHhhhhhhhcccccCCCCcchhhhcccCC
Q 036977 370 KLHSLKLEW------LPELTSFA----------NTGQIHSDLVV-EFPSLLNLEIHGCNNMLRFISTSSPADTLHSEMQS 432 (693)
Q Consensus 370 ~c~glPLaw------l~~~~~~~----------~~~~i~~~l~~-sy~~L~~~~lk~cfl~~~~fp~~~~~~Li~lw~~g 432 (693)
.|+|.|++- +....... ....+...+.- -+..||+ ..+..+...++++.-+ ..+... +.|
T Consensus 214 ~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~~~~-~~l~~~-l~~ 290 (903)
T PRK04841 214 DVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLRSMN-DALIVR-VTG 290 (903)
T ss_pred HhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccccCC-HHHHHH-HcC
Confidence 999999981 21111100 01223333332 3788997 8999999999987444 222221 112
Q ss_pred CcccccccCcchhhhhhhhcCCCCchhhhccccccccccccccCCccEEEEcCCccccc
Q 036977 433 PPLFDEKVGIPSSLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKVLILDDLPRLTS 491 (693)
Q Consensus 433 ~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~hdli~~~~ 491 (693)
.......++.|...+++ +...++.. ..|++|++++++.
T Consensus 291 ------~~~~~~~L~~l~~~~l~-~~~~~~~~--------------~~yr~H~L~r~~l 328 (903)
T PRK04841 291 ------EENGQMRLEELERQGLF-IQRMDDSG--------------EWFRYHPLFASFL 328 (903)
T ss_pred ------CCcHHHHHHHHHHCCCe-eEeecCCC--------------CEEehhHHHHHHH
Confidence 12446789999999987 22212222 2788999999987
No 5
>PF05729 NACHT: NACHT domain
Probab=99.12 E-value=5.1e-10 Score=104.89 Aligned_cols=151 Identities=23% Similarity=0.288 Sum_probs=95.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCC----CCEEEEEEecCCCChH---HHHHHHHHHhCCCCCCCCCHHHHHHHHH
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKL----IDKVVMAEVTQNPDPQ---KIQDKLASDLGMKFDLNDSIHHRASRLR 252 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 252 (693)
+++.|+|.+|+||||+++.++........ +...+|++.+...... .+...+..+....... ....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~------~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP------IEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh------hHHHHH
Confidence 57899999999999999999999876643 3456777776544322 3444444443222111 111334
Q ss_pred HHHhcCCcEEEEEeCCCCccCcccc--CCCCCC-cccccccccCCCeEEEEecCChhh--hhhhcCCCcEEEcCCCCHHH
Q 036977 253 ERLKQEKRVLIILDNIWTKLELDAV--GIPSGD-VDEKDREDDQRRCTIILTSRSRDL--LCIDMNSQKIFWIDALSKEE 327 (693)
Q Consensus 253 ~~L~~~k~~LlVlDdv~~~~~~~~l--~~~~~~-~~~~~~~~~~~~~~IivTtR~~~v--~~~~~~~~~~~~l~~L~~~e 327 (693)
..+...+++++|+|+++....-... ...+.. +.+++.....++++|++|+|.... ..........+.+.+|+.++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 4444458899999999876431111 000000 112222224568999999999877 33334455689999999999
Q ss_pred HHHHHHHhh
Q 036977 328 ALHLAKLQH 336 (693)
Q Consensus 328 a~~Lf~~~~ 336 (693)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998775
No 6
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.06 E-value=3.4e-10 Score=112.61 Aligned_cols=200 Identities=23% Similarity=0.235 Sum_probs=102.4
Q ss_pred ccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHH---------HH
Q 036977 160 FDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQD---------KL 230 (693)
Q Consensus 160 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~---------~i 230 (693)
|+||+++++.|.+++..+..+.+.|+|+.|+|||+|++.+.+..+..+ + .++|+..........+.. .+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 789999999999999887789999999999999999999999875431 1 344554443332221111 11
Q ss_pred HHHhC----CCC------CCCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCcc-CccccCCCCCCcccccccc-cCCCeE
Q 036977 231 ASDLG----MKF------DLNDSIHHRASRLRERLKQ-EKRVLIILDNIWTKL-ELDAVGIPSGDVDEKDRED-DQRRCT 297 (693)
Q Consensus 231 ~~~l~----~~~------~~~~~~~~~~~~l~~~L~~-~k~~LlVlDdv~~~~-~~~~l~~~~~~~~~~~~~~-~~~~~~ 297 (693)
.+.++ ... ............+.+.+.. +++.+||+||++... ........+..+...+... ......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 11121 110 0112223334444444443 355999999998765 2111100000011111110 223334
Q ss_pred EEEecCChhhhhh-------hcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhh
Q 036977 298 IILTSRSRDLLCI-------DMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPK 370 (693)
Q Consensus 298 IivTtR~~~v~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 370 (693)
+|+++........ ..+....+.+++|+.+++++++...+... ..-+.-.+..++|...
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---------------IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------------------HHHHHHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---------------hcccCCHHHHHHHHHH
Confidence 5555544433221 12334469999999999999998865321 0012234566899999
Q ss_pred cCCCcc
Q 036977 371 LHSLKL 376 (693)
Q Consensus 371 c~glPL 376 (693)
+||.|.
T Consensus 224 ~gG~P~ 229 (234)
T PF01637_consen 224 TGGNPR 229 (234)
T ss_dssp HTT-HH
T ss_pred hCCCHH
Confidence 999996
No 7
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.02 E-value=2.8e-08 Score=101.24 Aligned_cols=180 Identities=16% Similarity=0.176 Sum_probs=110.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHH---
Q 036977 176 DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLR--- 252 (693)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~--- 252 (693)
..+.+++.|+|++|+||||+++.+++...... + ...|+ +....+..+++..++..++.+... .+.......+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHH
Confidence 34567899999999999999999998866321 1 12233 333456778899999999876543 33333333333
Q ss_pred -HHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCChhhhh--------hhcCCCcEEEcC
Q 036977 253 -ERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLC--------IDMNSQKIFWID 321 (693)
Q Consensus 253 -~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~--------~~~~~~~~~~l~ 321 (693)
.....+++.++|+||++... .++.+.. +.+ ..........|++|........ ........+.+.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~-l~~----~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRM-LSN----FQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHH-HhC----cccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 33334578999999999764 2333321 110 0000222334566654432100 001123468899
Q ss_pred CCCHHHHHHHHHHhhhhhhhccccccccccCCCC-CCCchhhHHHHHhhhcCCCccc
Q 036977 322 ALSKEEALHLAKLQHLEISYCESMEGVVDTTGWS-ERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 322 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~I~~~c~glPLa 377 (693)
+++.+|..+++...+... +.. ...-..+....|++.++|.|..
T Consensus 191 ~l~~~e~~~~l~~~l~~~-------------g~~~~~~~~~~~~~~i~~~s~G~p~~ 234 (269)
T TIGR03015 191 PLDREETREYIEHRLERA-------------GNRDAPVFSEGAFDAIHRFSRGIPRL 234 (269)
T ss_pred CCCHHHHHHHHHHHHHHc-------------CCCCCCCcCHHHHHHHHHHcCCcccH
Confidence 999999999998887533 000 1123357889999999999974
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.00 E-value=1.4e-09 Score=132.13 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=88.8
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCcc------ccccceeccCCC-CcccccCCCCCcCEeecC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLEE------VLHLEELNAKEE-HIGPLFPRLSWLRLIDLP 622 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~~------l~~L~~L~l~~~-~l~~~~~~L~~L~~L~L~ 622 (693)
+++|+.|.+.+|..+. .+|.++++|++|+.|+|++|..++. +++|++|+++++ .+..+....++|+.|+|+
T Consensus 777 ~~sL~~L~Ls~n~~l~--~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls 854 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLV--ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLS 854 (1153)
T ss_pred cccchheeCCCCCCcc--ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECC
Confidence 3578888888887665 4577788888888888888877663 456888888873 444444445678888888
Q ss_pred CCcCcccccccccCCCCcCEEecccccccccccccccc---cceeecccccccc
Q 036977 623 KLKRFYNFTGNIIELPELRYLTIENCPDMETFISNSTS---VLHMTADNKEAQK 673 (693)
Q Consensus 623 ~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~~~~---l~~l~~~~~~~~~ 673 (693)
+ +.++.+|.++..+++|++|++.+|++|+.+|....+ |..+.+.+|+...
T Consensus 855 ~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 855 R-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred C-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 7 678888888888888888888888888888776544 4445666776654
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.98 E-value=2.8e-08 Score=106.06 Aligned_cols=177 Identities=18% Similarity=0.170 Sum_probs=113.8
Q ss_pred ccccchHHHHHHHHHHHhc----CCceEEEEEecCCCcHHHHHHHHHHHhhccC-CC---CEEEEEEecCCCChHHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKD----DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDK-LI---DKVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F---~~~~wv~vs~~~~~~~~~~~ 229 (693)
+.++||+++++.|..++.. ...+.+.|+|++|+|||++++.++++..... .. -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999999863 4457899999999999999999999865321 11 24678888777788889999
Q ss_pred HHHHh---CCCCCC-CCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCcc-CccccCCCCCCcccc--cccccCCCeEEEEe
Q 036977 230 LASDL---GMKFDL-NDSIHHRASRLRERLK-QEKRVLIILDNIWTKL-ELDAVGIPSGDVDEK--DREDDQRRCTIILT 301 (693)
Q Consensus 230 i~~~l---~~~~~~-~~~~~~~~~~l~~~L~-~~k~~LlVlDdv~~~~-~~~~l~~~~~~~~~~--~~~~~~~~~~IivT 301 (693)
|+.++ +...+. ..+..+....+.+.+. .+++++||||+++... ..+.+...+. .. ..........+|.+
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~---~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLS---RARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHh---ccccccCCCCCeEEEEEE
Confidence 99998 333222 2344555666666664 3367899999998762 1111100000 00 00001133445555
Q ss_pred cCChhhhhh----hcC--CCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 302 SRSRDLLCI----DMN--SQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 302 tR~~~v~~~----~~~--~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
|........ ... ....+.+.+++.++..+++..++.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 554432110 001 124689999999999999998874
No 10
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.96 E-value=1.9e-08 Score=108.45 Aligned_cols=177 Identities=19% Similarity=0.162 Sum_probs=117.5
Q ss_pred CccccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHH
Q 036977 157 NEAFDSRMKVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLAS 232 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 232 (693)
+..++||++++++|...+. +.....+.|+|++|+|||++++.++++.......-.++++++....+...++..++.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4568999999999999874 234567889999999999999999998766532345677877777788899999999
Q ss_pred HhCC-CCC-CCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCcc---CccccCCCCCCcccccccccCCCeEEEEecCChh
Q 036977 233 DLGM-KFD-LNDSIHHRASRLRERLKQ-EKRVLIILDNIWTKL---ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD 306 (693)
Q Consensus 233 ~l~~-~~~-~~~~~~~~~~~l~~~L~~-~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~ 306 (693)
++.. +.+ ...+..+....+.+.+.. +++.+||||+++... ..+.+.. + ........+.+..+|.++....
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~-l---~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYS-L---LRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHH-H---HHhhhccCCCeEEEEEEECCcc
Confidence 9865 222 224566677777777764 356899999998753 1111100 0 0000000111233666666554
Q ss_pred hhhhh------cCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 307 LLCID------MNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 307 v~~~~------~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
+.... .-....+.+.+++.++..+++...+.
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 32110 01124789999999999999998874
No 11
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.88 E-value=2.8e-08 Score=109.39 Aligned_cols=278 Identities=16% Similarity=0.119 Sum_probs=169.6
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLAS 232 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~ 232 (693)
|......+-|...++.+-. ....+.+.|.-++|.|||||+.+.+..... -..+.|.++.+. .++..+..-++.
T Consensus 15 P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHH
Confidence 3445566778766665443 236899999999999999999999883332 367999999765 567788888888
Q ss_pred HhCCCCCC-------------CCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCccC------ccccCCCCCCccccccccc
Q 036977 233 DLGMKFDL-------------NDSIHHRASRLRERLKQ-EKRVLIILDNIWTKLE------LDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 233 ~l~~~~~~-------------~~~~~~~~~~l~~~L~~-~k~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~~~~ 292 (693)
+++.-.+. ..+.......+..-+.. .++..+||||..-..+ ++.+... .
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~-----------~ 157 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH-----------A 157 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh-----------C
Confidence 77633222 13333445555554543 3679999999764421 2222222 4
Q ss_pred CCCeEEEEecCChhhhhhh--cCCCcEEEcC----CCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHH
Q 036977 293 QRRCTIILTSRSRDLLCID--MNSQKIFWID----ALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELK 366 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~~~~--~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (693)
..+-..|+|||+..-.... .-.....+++ .++.+|+-++|..... .+-.......
T Consensus 158 P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-------------------l~Ld~~~~~~ 218 (894)
T COG2909 158 PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-------------------LPLDAADLKA 218 (894)
T ss_pred CCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-------------------CCCChHHHHH
Confidence 4588999999998642100 0011233333 3788999998877753 2222345667
Q ss_pred HhhhcCCCccc------ccccccccc----c-c---cccccch-hccccCchhHhhhhhhhcccccCCCCcchhhhcccC
Q 036977 367 VFPKLHSLKLE------WLPELTSFA----N-T---GQIHSDL-VVEFPSLLNLEIHGCNNMLRFISTSSPADTLHSEMQ 431 (693)
Q Consensus 367 I~~~c~glPLa------wl~~~~~~~----~-~---~~i~~~l-~~sy~~L~~~~lk~cfl~~~~fp~~~~~~Li~lw~~ 431 (693)
+.+...|.+-| |+....... . + ..+.+.| .==++.||+ +++...+.+|+++.-. .+|+.
T Consensus 219 L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f~-~eL~~---- 292 (894)
T COG2909 219 LYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRFN-DELCN---- 292 (894)
T ss_pred HHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHhh-HHHHH----
Confidence 77777785555 233000000 0 0 1111111 123567887 8899888899877551 11111
Q ss_pred CCcccccccCcchhhhhhhhcCCCCchhhhccccccccccccccCCccEEEEcCCccccc
Q 036977 432 SPPLFDEKVGIPSSLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKVLILDDLPRLTS 491 (693)
Q Consensus 432 g~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~hdli~~~~ 491 (693)
.+..+..+...+++|..++++ +...++... .|+.|.++.+|-
T Consensus 293 ---~Ltg~~ng~amLe~L~~~gLF-l~~Ldd~~~--------------WfryH~LFaeFL 334 (894)
T COG2909 293 ---ALTGEENGQAMLEELERRGLF-LQRLDDEGQ--------------WFRYHHLFAEFL 334 (894)
T ss_pred ---HHhcCCcHHHHHHHHHhCCCc-eeeecCCCc--------------eeehhHHHHHHH
Confidence 111244677789999999999 444444343 999999988876
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.84 E-value=8.5e-08 Score=99.56 Aligned_cols=256 Identities=12% Similarity=0.021 Sum_probs=140.4
Q ss_pred CccccchHHHHHHHHHHHh-----cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHH
Q 036977 157 NEAFDSRMKVFQDVMEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLA 231 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 231 (693)
...|+|++..++.+..++. ......+.++|++|+|||+||+.+++..... + ..+..+....... +...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHH
Confidence 3578999999999988885 2345678899999999999999999887542 2 1222211111222 22223
Q ss_pred HHhCCCC----CC-CCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChh
Q 036977 232 SDLGMKF----DL-NDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD 306 (693)
Q Consensus 232 ~~l~~~~----~~-~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~ 306 (693)
..++... ++ ..-.....+.+...+.+ .+..+|+|+..+...+... ..+.+-|..||+...
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~-~~~~~v~~~~~~~~~~~~~--------------~~~~~li~~t~~~~~ 141 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMED-FRLDIVIGKGPSARSVRLD--------------LPPFTLVGATTRAGM 141 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhh-hheeeeeccCccccceeec--------------CCCeEEEEecCCccc
Confidence 3332211 00 00001223334444544 4455666665544433321 223556677777654
Q ss_pred hhhhhc-CCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc--------
Q 036977 307 LLCIDM-NSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE-------- 377 (693)
Q Consensus 307 v~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa-------- 377 (693)
+..... .....+.+++++.++..+++.+.+... ...-..+....|++.|+|.|-.
T Consensus 142 l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~----------------~~~~~~~al~~ia~~~~G~pR~~~~ll~~~ 205 (305)
T TIGR00635 142 LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL----------------NVEIEPEAALEIARRSRGTPRIANRLLRRV 205 (305)
T ss_pred cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh----------------CCCcCHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 422111 123578999999999999999887632 1222346778899999999965
Q ss_pred c-ccc-cccccc----ccccccchhccccCchhHhhhhhhh-cccccCCC--CcchhhhcccCCCcccccccCcchhhh-
Q 036977 378 W-LPE-LTSFAN----TGQIHSDLVVEFPSLLNLEIHGCNN-MLRFISTS--SPADTLHSEMQSPPLFDEKVGIPSSLV- 447 (693)
Q Consensus 378 w-l~~-~~~~~~----~~~i~~~l~~sy~~L~~~~lk~cfl-~~~~fp~~--~~~~Li~lw~~g~~~~~~~~~~~~~l~- 447 (693)
| ... ...... -......+...|..+++ .-+..+. ....+..+ ...++.... |.. ...++..++
T Consensus 206 ~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~~~~~~~ia~~l--g~~----~~~~~~~~e~ 278 (305)
T TIGR00635 206 RDFAQVRGQKIINRDIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGGPVGLKTLAAAL--GED----ADTIEDVYEP 278 (305)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCCcccHHHHHHHh--CCC----cchHHHhhhH
Confidence 2 100 000001 01222235666777876 4344333 44555544 222222211 221 234556677
Q ss_pred hhhhcCCCC
Q 036977 448 NLKVSGCPK 456 (693)
Q Consensus 448 ~L~~~~l~~ 456 (693)
.|++.+++.
T Consensus 279 ~Li~~~li~ 287 (305)
T TIGR00635 279 YLLQIGFLQ 287 (305)
T ss_pred HHHHcCCcc
Confidence 699999994
No 13
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.78 E-value=1.9e-07 Score=97.71 Aligned_cols=260 Identities=13% Similarity=0.029 Sum_probs=140.6
Q ss_pred CCCCccccchHHHHHHHHHHHh-----cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQD 228 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 228 (693)
|.....|+||++.++.+...+. ....+.+.++|++|+|||+||+.+++..... + .++..+. ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence 3566789999999999887774 2345788999999999999999999987543 1 1222211 11112223
Q ss_pred HHHHHhCCCC----CCCCC-HHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecC
Q 036977 229 KLASDLGMKF----DLNDS-IHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSR 303 (693)
Q Consensus 229 ~i~~~l~~~~----~~~~~-~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR 303 (693)
.++..++... ++... .....+.+...+.+ .+..+|+|+..+...+... ..+.+-|..|++
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~-~~~~~~l~~~~~~~~~~~~--------------l~~~~li~at~~ 159 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMED-FRLDIMIGKGPAARSIRLD--------------LPPFTLIGATTR 159 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHh-cceeeeeccCccccceeec--------------CCCceEEeecCC
Confidence 3333332111 00000 01112223333333 3344455543333221110 122455667777
Q ss_pred Chhhhhhhc-CCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc---cc
Q 036977 304 SRDLLCIDM-NSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE---WL 379 (693)
Q Consensus 304 ~~~v~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa---wl 379 (693)
...+..... .....+.+++++.++..+++.+.+... ...-..+....|++.|+|.|-. .+
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~----------------~~~~~~~~~~~ia~~~~G~pR~a~~~l 223 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL----------------GVEIDEEGALEIARRSRGTPRIANRLL 223 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc----------------CCCcCHHHHHHHHHHcCCCchHHHHHH
Confidence 554422111 123578999999999999999887643 2223346788999999999975 11
Q ss_pred ccc-------ccccc----ccccccchhccccCchhHhhhhhhhcccccCCC--CcchhhhcccCCCcccccccCcchhh
Q 036977 380 PEL-------TSFAN----TGQIHSDLVVEFPSLLNLEIHGCNNMLRFISTS--SPADTLHSEMQSPPLFDEKVGIPSSL 446 (693)
Q Consensus 380 ~~~-------~~~~~----~~~i~~~l~~sy~~L~~~~lk~cfl~~~~fp~~--~~~~Li~lw~~g~~~~~~~~~~~~~l 446 (693)
... ..... -......+...+..|++.+.+-.......|+.+ ....+....-.. ...++..+
T Consensus 224 ~~~~~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~------~~~~~~~~ 297 (328)
T PRK00080 224 RRVRDFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEE------RDTIEDVY 297 (328)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCC------cchHHHHh
Confidence 110 00101 112334456677778763333332355666665 333332222111 23455567
Q ss_pred h-hhhhcCCCC
Q 036977 447 V-NLKVSGCPK 456 (693)
Q Consensus 447 ~-~L~~~~l~~ 456 (693)
+ .|++.++++
T Consensus 298 e~~Li~~~li~ 308 (328)
T PRK00080 298 EPYLIQQGFIQ 308 (328)
T ss_pred hHHHHHcCCcc
Confidence 7 899999994
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.76 E-value=5.2e-10 Score=99.22 Aligned_cols=133 Identities=18% Similarity=0.189 Sum_probs=96.9
Q ss_pred chhhcccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC
Q 036977 509 NSTIQKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD 588 (693)
Q Consensus 509 ~~~~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~ 588 (693)
...+.++..|.+.++.++++|.+. +.++.|+.|.+. -.....+|..++.++-|++|++....
T Consensus 52 ia~l~nlevln~~nnqie~lp~~i---------------ssl~klr~lnvg---mnrl~~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIEELPTSI---------------SSLPKLRILNVG---MNRLNILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred HHHhhhhhhhhcccchhhhcChhh---------------hhchhhhheecc---hhhhhcCccccCCCchhhhhhccccc
Confidence 344666677777777777665443 113445555543 22233568899999999999997654
Q ss_pred CCc--------cccccceeccCCCCcccc---cCCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccccccccccc
Q 036977 589 SLE--------EVLHLEELNAKEEHIGPL---FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISN 657 (693)
Q Consensus 589 ~l~--------~l~~L~~L~l~~~~l~~~---~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~ 657 (693)
--+ .+..|+.|.+++|+++-+ +++|++||.|.++. +.+-+||..++.|+.|++|+|.+. .|..+|+.
T Consensus 114 l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgn-rl~vlppe 191 (264)
T KOG0617|consen 114 LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGN-RLTVLPPE 191 (264)
T ss_pred cccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccc-eeeecChh
Confidence 211 234577778888876655 89999999999998 788999999999999999999997 68999987
Q ss_pred cccc
Q 036977 658 STSV 661 (693)
Q Consensus 658 ~~~l 661 (693)
...+
T Consensus 192 l~~l 195 (264)
T KOG0617|consen 192 LANL 195 (264)
T ss_pred hhhh
Confidence 7654
No 15
>PRK06893 DNA replication initiation factor; Validated
Probab=98.71 E-value=2.1e-07 Score=91.86 Aligned_cols=146 Identities=14% Similarity=0.218 Sum_probs=88.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
..+.+.|+|++|+|||+|++.+++....+ ...+.|+.+.... ... ..+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~---------------------~~~~~~~~- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS---------------------PAVLENLE- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh---------------------HHHHhhcc-
Confidence 44678999999999999999999997654 3355677664210 000 01122222
Q ss_pred CCcEEEEEeCCCCc---cCccccCCCCCCcccccccccCCCeEEEE-ecCC---------hhhhhhhcCCCcEEEcCCCC
Q 036977 258 EKRVLIILDNIWTK---LELDAVGIPSGDVDEKDREDDQRRCTIIL-TSRS---------RDLLCIDMNSQKIFWIDALS 324 (693)
Q Consensus 258 ~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~Iiv-TtR~---------~~v~~~~~~~~~~~~l~~L~ 324 (693)
+.-+|++||+|.. ..|+.. ++..+......|..+|+ |++. +.+.. .+.....+++++++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~------l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd 162 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELA------IFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLT 162 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHH------HHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCC
Confidence 2359999999974 234321 11112222334555554 4443 23322 34556799999999
Q ss_pred HHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCC
Q 036977 325 KEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSL 374 (693)
Q Consensus 325 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl 374 (693)
.++.++++.+.+... .-.--.++..-|++.+.|-
T Consensus 163 ~e~~~~iL~~~a~~~----------------~l~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 163 DEQKIIVLQRNAYQR----------------GIELSDEVANFLLKRLDRD 196 (229)
T ss_pred HHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHhccCC
Confidence 999999999988633 1222346667777776653
No 16
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.65 E-value=1.8e-07 Score=100.93 Aligned_cols=175 Identities=15% Similarity=0.155 Sum_probs=104.0
Q ss_pred CCCccccchHHHHHH---HHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHH
Q 036977 155 KDNEAFDSRMKVFQD---VMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLA 231 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 231 (693)
.....|+|++..+.. +..++..+....+.++|++|+||||+|+.+++..... | +.++.......-.+.++
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKDLREVI 81 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHHHHHHH
Confidence 456678999988766 8888877777888999999999999999999876432 2 22222111111112221
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEE--ecCChhh
Q 036977 232 SDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIIL--TSRSRDL 307 (693)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~Iiv--TtR~~~v 307 (693)
.........+++.+|++|+++... +.+.+...+ ..+..+++ ||.+...
T Consensus 82 -----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l-----------e~~~iilI~att~n~~~ 133 (413)
T PRK13342 82 -----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV-----------EDGTITLIGATTENPSF 133 (413)
T ss_pred -----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh-----------hcCcEEEEEeCCCChhh
Confidence 122222222367899999998653 233332221 22443444 3443321
Q ss_pred --hhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 308 --LCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 308 --~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
..........+.+.+++.++...++.+.+.... .+. ..-..+....|++.|+|-+..
T Consensus 134 ~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~-----------~~~--i~i~~~al~~l~~~s~Gd~R~ 192 (413)
T PRK13342 134 EVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKE-----------RGL--VELDDEALDALARLANGDARR 192 (413)
T ss_pred hccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhh-----------cCC--CCCCHHHHHHHHHhCCCCHHH
Confidence 111123346899999999999999988764320 000 022245667788888887764
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.61 E-value=2.6e-09 Score=94.85 Aligned_cols=127 Identities=19% Similarity=0.210 Sum_probs=98.0
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC------CCccccccceeccCCCCcc-----cccCCCCCcCEe
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD------SLEEVLHLEELNAKEEHIG-----PLFPRLSWLRLI 619 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~------~l~~l~~L~~L~l~~~~l~-----~~~~~L~~L~~L 619 (693)
..|+.|++.+..+.....+|.+++.|+.|+.|++.-.. ...++|.|+.|+++.|++. .-|..|+.|+-|
T Consensus 53 a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 53 AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHH
Confidence 45666666666666666789999999999999983221 2347899999999876553 336677888999
Q ss_pred ecCCCcCcccccccccCCCCcCEEecccccccccccccc---cccceeeccccccccccchhh
Q 036977 620 DLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISNS---TSVLHMTADNKEAQKLKSEEN 679 (693)
Q Consensus 620 ~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~~---~~l~~l~~~~~~~~~~~~~~~ 679 (693)
.|.. +.++.+|..+++|++||.|.+++. .|-++|... ..|+.|.|.|..-+-+.+++.
T Consensus 133 yl~d-ndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 133 YLGD-NDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred HhcC-CCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccceeeecChhhh
Confidence 9998 889999999999999999999987 577999876 456667777776666666643
No 18
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.59 E-value=2.4e-07 Score=83.00 Aligned_cols=94 Identities=22% Similarity=0.372 Sum_probs=72.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc---CCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED---KLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRER 254 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (693)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...++.+++.......+.......+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34789999999999999999999987532 112457899998888999999999999998877656778888999999
Q ss_pred HhcCCcEEEEEeCCCCc
Q 036977 255 LKQEKRVLIILDNIWTK 271 (693)
Q Consensus 255 L~~~k~~LlVlDdv~~~ 271 (693)
+...+..+||+||++..
T Consensus 83 l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHCTEEEEEEETTHHH
T ss_pred HHhcCCeEEEEeChHhc
Confidence 98855569999999875
No 19
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=6.6e-07 Score=99.12 Aligned_cols=179 Identities=14% Similarity=0.085 Sum_probs=110.4
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccC-------------------CCCEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDK-------------------LIDKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 214 (693)
.....++|.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+...... .|..+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 4567789999999999999987664 5567999999999999999988764321 1222344
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--ccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--LDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~ 292 (693)
++.+....+.+ .+++++.... ....++.-++|||+++.... ++.+...+.. .
T Consensus 93 IDAas~rgVDd-IReLIe~a~~-----------------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE--------P 146 (830)
T PRK07003 93 MDAASNRGVDE-MAALLERAVY-----------------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEE--------P 146 (830)
T ss_pred ecccccccHHH-HHHHHHHHHh-----------------ccccCCceEEEEeChhhCCHHHHHHHHHHHHh--------c
Confidence 43333222222 1222222110 01112456899999997643 4544332222 3
Q ss_pred CCCeEEEEecCChhhh-hhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIILTSRSRDLL-CIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
....++|++|.+..-. ......-..+.+..++.++..+.+.+.+... ......+....|++.+
T Consensus 147 P~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E----------------gI~id~eAL~lIA~~A 210 (830)
T PRK07003 147 PPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE----------------RIAFEPQALRLLARAA 210 (830)
T ss_pred CCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHc
Confidence 3467777777766432 2222334589999999999999998876532 1122245667788888
Q ss_pred CCCc
Q 036977 372 HSLK 375 (693)
Q Consensus 372 ~glP 375 (693)
+|-.
T Consensus 211 ~Gsm 214 (830)
T PRK07003 211 QGSM 214 (830)
T ss_pred CCCH
Confidence 7754
No 20
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.58 E-value=6.2e-07 Score=94.61 Aligned_cols=197 Identities=17% Similarity=0.091 Sum_probs=107.4
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCC-EEEEEEecCCCCh-HHHHH---
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLID-KVVMAEVTQNPDP-QKIQD--- 228 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~~~--- 228 (693)
|.....++|++..++.+..++..+..+.+.++|++|+||||+|+.+++..... .+. ..++++++..... ...+.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCc
Confidence 34456788999999999999887776778999999999999999999887543 122 2445554432100 00000
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhc-----CCcEEEEEeCCCCccC--ccccCCCCCCcccccccccCCCeEEEEe
Q 036977 229 KLASDLGMKFDLNDSIHHRASRLRERLKQ-----EKRVLIILDNIWTKLE--LDAVGIPSGDVDEKDREDDQRRCTIILT 301 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~-----~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~IivT 301 (693)
.....++..........+....+.+.... ..+-++|+||++.... .+.+...+.. ....+++|+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~--------~~~~~~~Il~ 161 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ--------YSRTCRFIIA 161 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh--------ccCCCeEEEE
Confidence 00000000000000111122222211111 2345899999975531 2222111111 2345667777
Q ss_pred cCChh-hhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCc
Q 036977 302 SRSRD-LLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLK 375 (693)
Q Consensus 302 tR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 375 (693)
|.... +..........+.+.+++.++....+.+.+... ...-..+....+++.++|-+
T Consensus 162 ~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~al~~l~~~~~gdl 220 (337)
T PRK12402 162 TRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAE----------------GVDYDDDGLELIAYYAGGDL 220 (337)
T ss_pred eCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCCCH
Confidence 75433 212112234578899999999988888876532 11223456777777777644
No 21
>PF13173 AAA_14: AAA domain
Probab=98.58 E-value=1.1e-07 Score=84.78 Aligned_cols=121 Identities=26% Similarity=0.209 Sum_probs=80.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQE 258 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (693)
-+++.|.|+.|+||||++++++++.. ....++|++..+........ .+ ....+.+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~- 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKP- 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhcc-
Confidence 36899999999999999999998866 23567777766543211100 00 22233333333
Q ss_pred CcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhhhh-----hcCCCcEEEcCCCCHHHH
Q 036977 259 KRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLCI-----DMNSQKIFWIDALSKEEA 328 (693)
Q Consensus 259 k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~~-----~~~~~~~~~l~~L~~~ea 328 (693)
++.+++||+++...+|......+.+ ..+..+|++|+........ ..+....+++.||+..|.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d--------~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVD--------NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHH--------hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 5689999999998888776444433 4456899999998876522 122335789999998764
No 22
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.57 E-value=1.3e-06 Score=88.69 Aligned_cols=147 Identities=18% Similarity=0.249 Sum_probs=92.8
Q ss_pred CCCCccccchHHHH---HHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC-ChHHHHHH
Q 036977 154 GKDNEAFDSRMKVF---QDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP-DPQKIQDK 229 (693)
Q Consensus 154 ~~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~ 229 (693)
|.....++|.+..+ .-|..++..+.+.-.-+||++|+||||||+.+....... | ..++-.. +++++ +.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdl-r~ 91 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDL-RE 91 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHH-HH
Confidence 45566777776655 334555567788888999999999999999999875543 3 3333222 23332 22
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cCccccCCCCCCcccccccccCCCeEEEE--ecCCh
Q 036977 230 LASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK--LELDAVGIPSGDVDEKDREDDQRRCTIIL--TSRSR 305 (693)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~Iiv--TtR~~ 305 (693)
+ .+.-++....+++.+|.+|+|+.. .+-+.+... ..+|.-|+| ||-++
T Consensus 92 i-----------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~-----------vE~G~iilIGATTENP 143 (436)
T COG2256 92 I-----------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPH-----------VENGTIILIGATTENP 143 (436)
T ss_pred H-----------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhh-----------hcCCeEEEEeccCCCC
Confidence 2 222233333358899999999865 344444332 445776666 44444
Q ss_pred hhh--hhhcCCCcEEEcCCCCHHHHHHHHHHhh
Q 036977 306 DLL--CIDMNSQKIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 306 ~v~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
.-. ........++.+++|+.++-.+++.+.+
T Consensus 144 sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 144 SFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred CeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 321 1122345699999999999999998844
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.5e-06 Score=91.97 Aligned_cols=180 Identities=11% Similarity=0.124 Sum_probs=107.6
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCC-------------------CCEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKL-------------------IDKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 214 (693)
.....++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++....... +....+
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 4456789999999999999877654 56789999999999999999988642211 111222
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 292 (693)
++.+......+ .+.+++.+.... ..+++-++|+|+++... .++.+...+.. .
T Consensus 93 ~~~~~~~~v~~-ir~i~~~~~~~p-----------------~~~~~kviIIDEa~~l~~~a~naLLk~lEe--------~ 146 (363)
T PRK14961 93 IDAASRTKVEE-MREILDNIYYSP-----------------SKSRFKVYLIDEVHMLSRHSFNALLKTLEE--------P 146 (363)
T ss_pred ecccccCCHHH-HHHHHHHHhcCc-----------------ccCCceEEEEEChhhcCHHHHHHHHHHHhc--------C
Confidence 22221111111 222222221100 01245699999998664 24443322222 3
Q ss_pred CCCeEEEEecCChh-hhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIILTSRSRD-LLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~IivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
...+++|++|.+.. +.....+....+++.+++.++..+.+...+... ...-..+.+..|++.+
T Consensus 147 ~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~----------------g~~i~~~al~~ia~~s 210 (363)
T PRK14961 147 PQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKE----------------SIDTDEYALKLIAYHA 210 (363)
T ss_pred CCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHc
Confidence 34566666665443 322222334689999999999998888776532 1122245667788888
Q ss_pred CCCcc
Q 036977 372 HSLKL 376 (693)
Q Consensus 372 ~glPL 376 (693)
+|-|-
T Consensus 211 ~G~~R 215 (363)
T PRK14961 211 HGSMR 215 (363)
T ss_pred CCCHH
Confidence 88664
No 24
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.51 E-value=1.8e-06 Score=90.37 Aligned_cols=181 Identities=10% Similarity=0.063 Sum_probs=105.0
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCC-EEEEEEecCCCChHHHHHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLID-KVVMAEVTQNPDPQKIQDKLASD 233 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~ 233 (693)
.....++|+++.++.+..++.....+.+.++|.+|+||||+|+.+++...... +. ..+-++.+.......+ .+.+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~-~~~i~~ 91 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDVI-RNKIKE 91 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHH-HHHHHH
Confidence 44567889999999999999877777789999999999999999999865432 21 1222222222222211 111111
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--ccccCCCCCCcccccccccCCCeEEEEecCChh-hhhh
Q 036977 234 LGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--LDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD-LLCI 310 (693)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~-v~~~ 310 (693)
+....+ .....+-++++|+++.... ...+...+.. ....+.+|+++.... +...
T Consensus 92 ~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~--------~~~~~~lIl~~~~~~~l~~~ 148 (319)
T PRK00440 92 FARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEM--------YSQNTRFILSCNYSSKIIDP 148 (319)
T ss_pred HHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhc--------CCCCCeEEEEeCCccccchh
Confidence 110000 0011356899999875521 2222111111 233456776664332 2111
Q ss_pred hcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 311 DMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 311 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
.......+.+.+++.++....+...+... ...-..+....+++.++|-+-
T Consensus 149 l~sr~~~~~~~~l~~~ei~~~l~~~~~~~----------------~~~i~~~al~~l~~~~~gd~r 198 (319)
T PRK00440 149 IQSRCAVFRFSPLKKEAVAERLRYIAENE----------------GIEITDDALEAIYYVSEGDMR 198 (319)
T ss_pred HHHHhheeeeCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCCCHH
Confidence 11233478999999999988888877533 112234567778888887654
No 25
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.51 E-value=1.2e-06 Score=86.66 Aligned_cols=164 Identities=11% Similarity=0.087 Sum_probs=98.7
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCC
Q 036977 162 SRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLN 241 (693)
Q Consensus 162 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 241 (693)
+.+..++.+..++.......+.|+|++|+|||+||+.+++..... ....+|++++.-.... .
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~~~---~------------- 82 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQAD---P------------- 82 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHHhH---H-------------
Confidence 456677788877666667889999999999999999999886543 3455666655322100 0
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC---cc-ccCCCCCCcccccccccCCCeEEEEecCChhhh--------h
Q 036977 242 DSIHHRASRLRERLKQEKRVLIILDNIWTKLE---LD-AVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL--------C 309 (693)
Q Consensus 242 ~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~---~~-~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~--------~ 309 (693)
.+...+. +.-+||+||++.... |. .+.. .+......+.++|+||+..... .
T Consensus 83 --------~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~-------~l~~~~~~~~~iIits~~~~~~~~~~~~~L~ 145 (226)
T TIGR03420 83 --------EVLEGLE--QADLVCLDDVEAIAGQPEWQEALFH-------LYNRVREAGGRLLIAGRAAPAQLPLRLPDLR 145 (226)
T ss_pred --------HHHhhcc--cCCEEEEeChhhhcCChHHHHHHHH-------HHHHHHHcCCeEEEECCCChHHCCcccHHHH
Confidence 1111222 234899999986532 22 1211 1111123345788888754311 1
Q ss_pred hhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 310 IDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 310 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
........+.+.+++.++...++...+... ..+--.+....+++.+.|.|.
T Consensus 146 ~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~----------------~~~~~~~~l~~L~~~~~gn~r 196 (226)
T TIGR03420 146 TRLAWGLVFQLPPLSDEEKIAALQSRAARR----------------GLQLPDEVADYLLRHGSRDMG 196 (226)
T ss_pred HHHhcCeeEecCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHhccCCHH
Confidence 112234689999999999999987765321 112223556667777777665
No 26
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=2.4e-06 Score=92.96 Aligned_cols=180 Identities=16% Similarity=0.150 Sum_probs=109.1
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCCC-----------------------C
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKLI-----------------------D 210 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-----------------------~ 210 (693)
.....++|.+..+..+...+..++. +.+.++|+.|+||||+|+.+++........ .
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP 97 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence 4556789999999999887776653 678899999999999999999886432111 1
Q ss_pred EEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccc
Q 036977 211 KVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKD 288 (693)
Q Consensus 211 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~ 288 (693)
.++.++........++ +.+++... ..--.+++-++|+|+++... .++.+...+..
T Consensus 98 Dv~eidaas~~~vd~I-r~iie~a~-----------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe----- 154 (507)
T PRK06645 98 DIIEIDAASKTSVDDI-RRIIESAE-----------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE----- 154 (507)
T ss_pred cEEEeeccCCCCHHHH-HHHHHHHH-----------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhh-----
Confidence 1222333222222222 12222111 00011256799999998753 35554333322
Q ss_pred ccccCCCeEEEE-ecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHH
Q 036977 289 REDDQRRCTIIL-TSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKV 367 (693)
Q Consensus 289 ~~~~~~~~~Iiv-TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 367 (693)
....+.+|+ ||+...+..........+++.+++.++..+.+.+.+... ......+....|
T Consensus 155 ---pp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~e----------------gi~ie~eAL~~I 215 (507)
T PRK06645 155 ---PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQE----------------NLKTDIEALRII 215 (507)
T ss_pred ---cCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHH
Confidence 334555554 555444433222334589999999999999999888643 112224556778
Q ss_pred hhhcCCCcc
Q 036977 368 FPKLHSLKL 376 (693)
Q Consensus 368 ~~~c~glPL 376 (693)
++.++|-+-
T Consensus 216 a~~s~GslR 224 (507)
T PRK06645 216 AYKSEGSAR 224 (507)
T ss_pred HHHcCCCHH
Confidence 888888654
No 27
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.3e-06 Score=98.80 Aligned_cols=180 Identities=13% Similarity=0.125 Sum_probs=107.3
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceE-EEEEecCCCcHHHHHHHHHHHhhccCC-------------------CCEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNI-IGVYGMGGVGKTTLVKQVAKKVMEDKL-------------------IDKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 214 (693)
.....++|.+..++.|.+++..+++.- +.++|+.|+||||+|+.+++....... |..+++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 456778999999999999998777654 589999999999999999988654211 111233
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cCccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK--LELDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~ 292 (693)
++......+.. ++.+.+.+ ...-..+++-++|+|+++.. ...+.+...+.. .
T Consensus 93 idAas~~kVDd-IReLie~v-----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE--------P 146 (944)
T PRK14949 93 VDAASRTKVDD-TRELLDNV-----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE--------P 146 (944)
T ss_pred eccccccCHHH-HHHHHHHH-----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc--------c
Confidence 32221122222 22332222 11111236679999999866 234443222221 2
Q ss_pred CCCeEEEEecCC-hhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIILTSRS-RDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~IivTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
...+++|++|.+ ..+.......-..|.+.+++.++....+.+.+... ......+....|++.+
T Consensus 147 P~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E----------------gI~~edeAL~lIA~~S 210 (944)
T PRK14949 147 PEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE----------------QLPFEAEALTLLAKAA 210 (944)
T ss_pred CCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHc
Confidence 234555555544 44432222334689999999999999888876422 1112234566677777
Q ss_pred CCCcc
Q 036977 372 HSLKL 376 (693)
Q Consensus 372 ~glPL 376 (693)
+|-|-
T Consensus 211 ~Gd~R 215 (944)
T PRK14949 211 NGSMR 215 (944)
T ss_pred CCCHH
Confidence 77664
No 28
>PLN03025 replication factor C subunit; Provisional
Probab=98.49 E-value=1.4e-06 Score=90.69 Aligned_cols=182 Identities=12% Similarity=0.016 Sum_probs=106.8
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCC-EEEEEEecCCCChHHHHHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLID-KVVMAEVTQNPDPQKIQDKLAS 232 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~ 232 (693)
|.....++|.++.++.|..++..++.+.+.++|++|+||||+|+.+++...... |. .++-++.+...+... .+.+++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd~~~~~~-vr~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRGIDV-VRNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccc-CccceeeecccccccHHH-HHHHHH
Confidence 345677889999999998888777777788999999999999999999864321 32 233333343333322 222222
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--ccccCCCCCCcccccccccCCCeEEEEecCChh-hhh
Q 036977 233 DLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--LDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD-LLC 309 (693)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~-v~~ 309 (693)
.+..... .+..++.-++++|+++.... .+.+...+.. ....+++|+++.... +..
T Consensus 87 ~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~--------~~~~t~~il~~n~~~~i~~ 144 (319)
T PLN03025 87 MFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEI--------YSNTTRFALACNTSSKIIE 144 (319)
T ss_pred HHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhc--------ccCCceEEEEeCCccccch
Confidence 2111000 00012457999999986632 1222111111 234566777665432 211
Q ss_pred hhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCc
Q 036977 310 IDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLK 375 (693)
Q Consensus 310 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 375 (693)
........+++.+++.++....+...+... ...-..+....|++.++|-.
T Consensus 145 ~L~SRc~~i~f~~l~~~~l~~~L~~i~~~e----------------gi~i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 145 PIQSRCAIVRFSRLSDQEILGRLMKVVEAE----------------KVPYVPEGLEAIIFTADGDM 194 (319)
T ss_pred hHHHhhhcccCCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCCCH
Confidence 111223588999999999998888877532 11122456677888887744
No 29
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.48 E-value=1.1e-06 Score=80.10 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 161 DSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 161 ~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
.||+..+..+...+.....+.+.|+|.+|+|||++++.+++..... -..++++...+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~ 60 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLE 60 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhh
Confidence 4788999999998877667889999999999999999999987632 23566776655443
No 30
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=1.2e-06 Score=95.70 Aligned_cols=181 Identities=13% Similarity=0.097 Sum_probs=109.2
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccC------------------------CC
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDK------------------------LI 209 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~F 209 (693)
.....++|.+..++.|.+++..++. ..+.++|..|+||||+|+.+.+.....+ .|
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 4567789999999999999987765 4568999999999999999998765310 11
Q ss_pred CEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccc
Q 036977 210 DKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEK 287 (693)
Q Consensus 210 ~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~ 287 (693)
..+++++......+.++ +++++.+ ...-..++.-++|+|+++... ..+.+...+..
T Consensus 93 pDviEIdAas~~gVDdI-ReLie~~-----------------~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE---- 150 (700)
T PRK12323 93 VDYIEMDAASNRGVDEM-AQLLDKA-----------------VYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE---- 150 (700)
T ss_pred CcceEecccccCCHHHH-HHHHHHH-----------------HhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc----
Confidence 12233333222222221 1121111 111112356799999998663 34444333321
Q ss_pred cccccCCCeE-EEEecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHH
Q 036977 288 DREDDQRRCT-IILTSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELK 366 (693)
Q Consensus 288 ~~~~~~~~~~-IivTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (693)
-..+++ |++||....+.......-..+.+..++.++..+.+.+.+... ......+....
T Consensus 151 ----PP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~E----------------gi~~d~eAL~~ 210 (700)
T PRK12323 151 ----PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEE----------------GIAHEVNALRL 210 (700)
T ss_pred ----CCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHc----------------CCCCCHHHHHH
Confidence 233445 444554444433222334589999999999999888776532 11122345677
Q ss_pred HhhhcCCCccc
Q 036977 367 VFPKLHSLKLE 377 (693)
Q Consensus 367 I~~~c~glPLa 377 (693)
|++.++|-|..
T Consensus 211 IA~~A~Gs~Rd 221 (700)
T PRK12323 211 LAQAAQGSMRD 221 (700)
T ss_pred HHHHcCCCHHH
Confidence 89999998864
No 31
>PTZ00202 tuzin; Provisional
Probab=98.47 E-value=2.3e-06 Score=88.55 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=108.7
Q ss_pred CCCCCCCCCCccccchHHHHHHHHHHHhcC---CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChH
Q 036977 148 STGLNDGKDNEAFDSRMKVFQDVMEALKDD---KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQ 224 (693)
Q Consensus 148 ~~~~~~~~~~~~~~gR~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 224 (693)
+.....|++...|+||+.++..+...|.+. ..+++.|+|++|+|||||++.+..... ...++++.. +..
T Consensus 252 ~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~e 323 (550)
T PTZ00202 252 STLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTE 323 (550)
T ss_pred ccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHH
Confidence 444567788999999999999999988532 346999999999999999999996643 124444444 679
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----c-CCcEEEEEe--CCCCccC-ccccCCCCCCcccccccccCCCe
Q 036977 225 KIQDKLASDLGMKFDLNDSIHHRASRLRERLK----Q-EKRVLIILD--NIWTKLE-LDAVGIPSGDVDEKDREDDQRRC 296 (693)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~-~k~~LlVlD--dv~~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 296 (693)
++++.++.+||.+.. ....++...+.+.+. . +++.+||+- +-.+..- .++. ..+.. ...-|
T Consensus 324 ElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~--------drr~c 392 (550)
T PTZ00202 324 DTLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALAC--------DRRLC 392 (550)
T ss_pred HHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHc--------cchhh
Confidence 999999999998443 233344444444442 2 455566643 2222110 1110 11111 23446
Q ss_pred EEEEecCChhhh--hhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 297 TIILTSRSRDLL--CIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 297 ~IivTtR~~~v~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.|++----+... ....+.-.-|.+.+++.++|.+.-++...
T Consensus 393 h~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~d 435 (550)
T PTZ00202 393 HVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAID 435 (550)
T ss_pred eeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhccc
Confidence 666655544431 11223346889999999999998877664
No 32
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.47 E-value=2.8e-07 Score=111.53 Aligned_cols=159 Identities=13% Similarity=0.126 Sum_probs=104.5
Q ss_pred hhcccccccccccCcc-ccccccCCCcccccCC-----CCCCcc--cccCcceeeecCCCCCCcCCCchhhcCCCCCCEE
Q 036977 511 TIQKCYEEMIGFRDIK-DLQLSHFPRLQEIWHG-----QALPVS--FFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYL 582 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~-~l~~~~~~~L~~~~~~-----~~~~~~--~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L 582 (693)
.+.++++|.+.+|.+. .+|...+++|+...-. ..+|.. .+++|+.|++.+|.-.. ..|..+.++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc--cCChhhhhCcCCCee
Confidence 4567888888877764 3444445555522211 123332 25677777777765433 346678888888888
Q ss_pred EecCCCCC-------ccccccceeccCCCCcc----cccCCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccccc
Q 036977 583 EVRNCDSL-------EEVLHLEELNAKEEHIG----PLFPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDM 651 (693)
Q Consensus 583 ~l~~c~~l-------~~l~~L~~L~l~~~~l~----~~~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L 651 (693)
++++|... ..+++|++|++++|.+. ..++++++|++|++++|.-...+|..++++++|++|++++|.-.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 88777532 35677888888876543 33678888888888886544567888888888888888888544
Q ss_pred ccccccc---cccceeecccccc
Q 036977 652 ETFISNS---TSVLHMTADNKEA 671 (693)
Q Consensus 652 ~~lp~~~---~~l~~l~~~~~~~ 671 (693)
..+|..+ .+|+.|.+++|.-
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred ccCchhHhhccCcCEEECcCCee
Confidence 4566544 4566666766653
No 33
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.45 E-value=8e-07 Score=84.80 Aligned_cols=48 Identities=21% Similarity=0.348 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHHHHh---cCCceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 159 AFDSRMKVFQDVMEALK---DDKLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 159 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
.|+||+++++++...+. ....+.+.|+|.+|+|||+|++.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999993 3457899999999999999999999998876
No 34
>PRK04195 replication factor C large subunit; Provisional
Probab=98.45 E-value=1.9e-06 Score=94.88 Aligned_cols=175 Identities=16% Similarity=0.083 Sum_probs=104.7
Q ss_pred CCCCccccchHHHHHHHHHHHhc----CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKD----DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 229 (693)
|.....++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.++++.. |+ ++-++.+...+... +..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-IER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-HHH
Confidence 45567799999999999999863 2268899999999999999999999863 32 33445554433332 233
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC------ccccCCCCCCcccccccccCCCeEEEEecC
Q 036977 230 LASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE------LDAVGIPSGDVDEKDREDDQRRCTIILTSR 303 (693)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~IivTtR 303 (693)
++........ ... .++.+||+|+++.... +..+... ....++.||+|+.
T Consensus 84 ~i~~~~~~~s--------------l~~-~~~kvIiIDEaD~L~~~~d~~~~~aL~~~----------l~~~~~~iIli~n 138 (482)
T PRK04195 84 VAGEAATSGS--------------LFG-ARRKLILLDEVDGIHGNEDRGGARAILEL----------IKKAKQPIILTAN 138 (482)
T ss_pred HHHHhhccCc--------------ccC-CCCeEEEEecCcccccccchhHHHHHHHH----------HHcCCCCEEEecc
Confidence 3222211100 001 1568999999987532 1222111 1223444666664
Q ss_pred Chhhh-h-hhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCc
Q 036977 304 SRDLL-C-IDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLK 375 (693)
Q Consensus 304 ~~~v~-~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 375 (693)
+..-. . ..-.....+.+.+++..+....+...+... ...-..+....|++.++|-.
T Consensus 139 ~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~e----------------gi~i~~eaL~~Ia~~s~GDl 196 (482)
T PRK04195 139 DPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKE----------------GIECDDEALKEIAERSGGDL 196 (482)
T ss_pred CccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCCCH
Confidence 43211 1 112234688999999999988888776532 11112355667777776633
No 35
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=3.7e-06 Score=91.96 Aligned_cols=180 Identities=17% Similarity=0.093 Sum_probs=107.5
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCCCCE------------------EEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDK------------------VVMA 215 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~------------------~~wv 215 (693)
.....++|.+..++.|..++..++. ..+.++|++|+||||+|+.+++.....+.+.. +.++
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 4456789999999999999887765 45599999999999999999998754222221 2222
Q ss_pred EecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccC
Q 036977 216 EVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQ 293 (693)
Q Consensus 216 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~ 293 (693)
+.+....... .+++...+. ..-..+++-++|+|+++... .++.+...+.. ..
T Consensus 91 ~~~~~~~vd~-iR~l~~~~~-----------------~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe--------p~ 144 (504)
T PRK14963 91 DAASNNSVED-VRDLREKVL-----------------LAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE--------PP 144 (504)
T ss_pred cccccCCHHH-HHHHHHHHh-----------------hccccCCCeEEEEECccccCHHHHHHHHHHHHh--------CC
Confidence 2221111111 111211111 10001256799999998552 24443222221 23
Q ss_pred CCeEEEEecCC-hhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcC
Q 036977 294 RRCTIILTSRS-RDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLH 372 (693)
Q Consensus 294 ~~~~IivTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~ 372 (693)
..+.+|++|.. ..+..........+.+.+++.++..+.+.+.+... ......+....|++.++
T Consensus 145 ~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~e----------------gi~i~~~Al~~ia~~s~ 208 (504)
T PRK14963 145 EHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAE----------------GREAEPEALQLVARLAD 208 (504)
T ss_pred CCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcC
Confidence 34455555543 33322222334689999999999999999887533 11223456778888888
Q ss_pred CCcc
Q 036977 373 SLKL 376 (693)
Q Consensus 373 glPL 376 (693)
|.+-
T Consensus 209 GdlR 212 (504)
T PRK14963 209 GAMR 212 (504)
T ss_pred CCHH
Confidence 8764
No 36
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.43 E-value=5e-07 Score=89.38 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=65.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC--CChHHHHHHH-----HHHhCCCCCCC-CCHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN--PDPQKIQDKL-----ASDLGMKFDLN-DSIHHRAS 249 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i-----~~~l~~~~~~~-~~~~~~~~ 249 (693)
....++|+|++|+|||||++.+++..... +|+.++|+.+..+ +++.++++.+ +..++.+.... .-......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999998765 8999999998776 7899999998 33333311110 01112223
Q ss_pred HHHHHHhcCCcEEEEEeCCCCc
Q 036977 250 RLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 250 ~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
........+++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 3333334468999999998754
No 37
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=2.6e-06 Score=93.43 Aligned_cols=180 Identities=12% Similarity=0.105 Sum_probs=108.1
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccC-------------------CCCEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDK-------------------LIDKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 214 (693)
.....++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+++...... .|..++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 4567789999999999999987764 5779999999999999999988764321 1222333
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 292 (693)
++.+....+.++ +.++..+. ..-..+++-++|+|+++... ..+.+...+.. .
T Consensus 92 IDAAs~~~VddI-Reli~~~~-----------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE--------P 145 (702)
T PRK14960 92 IDAASRTKVEDT-RELLDNVP-----------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE--------P 145 (702)
T ss_pred ecccccCCHHHH-HHHHHHHh-----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc--------C
Confidence 333322222221 22222111 11111356799999998663 33333222221 2
Q ss_pred CCCeEEEEecCChh-hhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIILTSRSRD-LLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~IivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
..+.++|++|.+.. +..........+.+.+++.++..+.+.+.+... ......+....|++.+
T Consensus 146 P~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE----------------gI~id~eAL~~IA~~S 209 (702)
T PRK14960 146 PEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKE----------------QIAADQDAIWQIAESA 209 (702)
T ss_pred CCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHc
Confidence 34556776665543 322223345689999999999998888877532 1122234556677777
Q ss_pred CCCcc
Q 036977 372 HSLKL 376 (693)
Q Consensus 372 ~glPL 376 (693)
+|-+-
T Consensus 210 ~GdLR 214 (702)
T PRK14960 210 QGSLR 214 (702)
T ss_pred CCCHH
Confidence 77553
No 38
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.5e-05 Score=81.96 Aligned_cols=171 Identities=22% Similarity=0.254 Sum_probs=117.5
Q ss_pred ccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhC
Q 036977 160 FDSRMKVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLG 235 (693)
Q Consensus 160 ~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (693)
+.+|+.+++++...|. +..+.-+.|+|.+|+|||+.++.++++......-..+++|++-...+..+++..|+++++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7899999999998874 334455999999999999999999999876522223899999999999999999999997
Q ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCccCcc-ccCCCCCCcccccccccCCCeE--EEEecCChhhh---
Q 036977 236 MKFDLNDSIHHRASRLRERLKQ-EKRVLIILDNIWTKLELD-AVGIPSGDVDEKDREDDQRRCT--IILTSRSRDLL--- 308 (693)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~L~~-~k~~LlVlDdv~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~--IivTtR~~~v~--- 308 (693)
.......+..+....+.+.+.. ++.+++|||+++....-. .+.-. +++.-....++ ||..+-+....
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~------L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYS------LLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHH------HHhhccccceeEEEEEEeccHHHHHHh
Confidence 5444446666677777777764 577899999998663321 11000 00100122343 33344433322
Q ss_pred ----hhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 309 ----CIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 309 ----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
...++. ..+...|-+.+|-.+++..++.
T Consensus 173 d~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 173 DPRVKSSLGP-SEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHH
Confidence 111222 2478899999999999988875
No 39
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=5.4e-06 Score=89.96 Aligned_cols=177 Identities=14% Similarity=0.139 Sum_probs=102.1
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCC-------------------CCEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKL-------------------IDKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 214 (693)
.....++|.+.....+...+..++. ..+.++|++|+||||+|+.+++....... +..++.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 4567789999998888888877766 45789999999999999999887543210 112233
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 292 (693)
++.+......++ +.+....... ...+++-++|+|+++... ..+.+...+.+ .
T Consensus 91 l~aa~~~gid~i-R~i~~~~~~~-----------------p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~--------p 144 (472)
T PRK14962 91 LDAASNRGIDEI-RKIRDAVGYR-----------------PMEGKYKVYIIDEVHMLTKEAFNALLKTLEE--------P 144 (472)
T ss_pred EeCcccCCHHHH-HHHHHHHhhC-----------------hhcCCeEEEEEEChHHhHHHHHHHHHHHHHh--------C
Confidence 333322222222 2222221110 011256799999997552 23333222211 2
Q ss_pred CCCeEEEEecCC-hhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIILTSRS-RDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~IivTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
...+.+|++|.+ ..+..........+.+.+++.++....+...+... ...-..+....|++.+
T Consensus 145 ~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~e----------------gi~i~~eal~~Ia~~s 208 (472)
T PRK14962 145 PSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAE----------------GIEIDREALSFIAKRA 208 (472)
T ss_pred CCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHh
Confidence 233444444433 33333223345689999999999888888776432 1122245566777766
Q ss_pred CC
Q 036977 372 HS 373 (693)
Q Consensus 372 ~g 373 (693)
+|
T Consensus 209 ~G 210 (472)
T PRK14962 209 SG 210 (472)
T ss_pred CC
Confidence 55
No 40
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.39 E-value=1.4e-05 Score=76.15 Aligned_cols=178 Identities=15% Similarity=0.140 Sum_probs=92.5
Q ss_pred CCCCccccchHHHHHHHHHHHh-----cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQD 228 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 228 (693)
|....+|+|.+..++.+.-.+. ++....+.+||++|+||||||..++++.... |. +.+...-....++ .
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~sg~~i~k~~dl-~ 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---ITSGPAIEKAGDL-A 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHHH-H
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---eccchhhhhHHHH-H
Confidence 4567889999999988765543 2457789999999999999999999998764 32 2222111111111 1
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--ccccCCCCCC--cccc---------cccccCCC
Q 036977 229 KLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--LDAVGIPSGD--VDEK---------DREDDQRR 295 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--~~~l~~~~~~--~~~~---------~~~~~~~~ 295 (693)
.++.. ++ ++-+|.+|+++.... -+.+.....+ ++-. ++.--.+=
T Consensus 94 ~il~~---------------------l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 94 AILTN---------------------LK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp HHHHT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred HHHHh---------------------cC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 12221 22 345777788875521 0101000000 0000 00001233
Q ss_pred eEEEEecCChhhhhhhcCCC-cEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCC
Q 036977 296 CTIILTSRSRDLLCIDMNSQ-KIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSL 374 (693)
Q Consensus 296 ~~IivTtR~~~v~~~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl 374 (693)
+-|=.|||...+........ -..+++..+.+|-.++..+.+..- .-+-..+.+.+|++.+.|-
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l----------------~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL----------------NIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT----------------T-EE-HHHHHHHHHCTTTS
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh----------------CCCcCHHHHHHHHHhcCCC
Confidence 55777888876643222223 355899999999999998877532 2334467899999999999
Q ss_pred cc
Q 036977 375 KL 376 (693)
Q Consensus 375 PL 376 (693)
|-
T Consensus 215 PR 216 (233)
T PF05496_consen 215 PR 216 (233)
T ss_dssp HH
T ss_pred hH
Confidence 85
No 41
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=4.3e-06 Score=91.66 Aligned_cols=180 Identities=11% Similarity=0.104 Sum_probs=106.5
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhcc-------------------CCCCEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMED-------------------KLIDKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w 214 (693)
.....++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++..... +.|...++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 4556789999999999999977655 457899999999999999999875421 11223334
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 292 (693)
++......+.++ +.+++. +...-..+++-++|+|+++... ..+.+...+.. .
T Consensus 93 idaas~~gvd~i-r~ii~~-----------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe--------p 146 (546)
T PRK14957 93 IDAASRTGVEET-KEILDN-----------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE--------P 146 (546)
T ss_pred eecccccCHHHH-HHHHHH-----------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc--------C
Confidence 433322222221 222222 1111112356799999998653 23333322222 2
Q ss_pred CCCeEEE-EecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTII-LTSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~Ii-vTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
...+.+| +||....+..........+++.+++.++-.+.+.+.+... ...........|++.+
T Consensus 147 p~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~e----------------gi~~e~~Al~~Ia~~s 210 (546)
T PRK14957 147 PEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKE----------------NINSDEQSLEYIAYHA 210 (546)
T ss_pred CCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHc
Confidence 2345444 5554444432223345689999999999888877765432 1122245556778888
Q ss_pred CCCcc
Q 036977 372 HSLKL 376 (693)
Q Consensus 372 ~glPL 376 (693)
+|-+-
T Consensus 211 ~GdlR 215 (546)
T PRK14957 211 KGSLR 215 (546)
T ss_pred CCCHH
Confidence 87553
No 42
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.35 E-value=8.1e-07 Score=107.54 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=115.9
Q ss_pred hhcccccccccccCcc-ccccc--cCCCcccccCC-----CCCCcc--cccCcceeeecCCCCCCcCCCchhhcCCCCCC
Q 036977 511 TIQKCYEEMIGFRDIK-DLQLS--HFPRLQEIWHG-----QALPVS--FFNNLRELVVDDCTNMSSAIPANLLRCLNNLR 580 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~-~l~~~--~~~~L~~~~~~-----~~~~~~--~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~ 580 (693)
.+.+++.|.+.+|.+. .++.. .+++|+..+-. ..+|.. .+++|++|.+.+|.-.. ..|..+.++++|+
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~ 215 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG--QIPRELGQMKSLK 215 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC--cCChHHcCcCCcc
Confidence 3567888888888875 34432 35666533221 234443 25688888888876443 4578899999999
Q ss_pred EEEecCCCCC-------ccccccceeccCCCCcc----cccCCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccc
Q 036977 581 YLEVRNCDSL-------EEVLHLEELNAKEEHIG----PLFPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCP 649 (693)
Q Consensus 581 ~L~l~~c~~l-------~~l~~L~~L~l~~~~l~----~~~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~ 649 (693)
+|++++|... ..+++|++|++++|.+. ..++++++|++|+|++|.-...+|..+.++++|++|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 9999888532 36789999999987654 448899999999999976555789999999999999999996
Q ss_pred ccccccccc---cccceeeccccccc
Q 036977 650 DMETFISNS---TSVLHMTADNKEAQ 672 (693)
Q Consensus 650 ~L~~lp~~~---~~l~~l~~~~~~~~ 672 (693)
-...+|..+ .+|+.|.+.++.-.
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccC
Confidence 444566544 56777777666543
No 43
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=5.1e-06 Score=88.72 Aligned_cols=192 Identities=14% Similarity=0.080 Sum_probs=108.8
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLAS 232 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 232 (693)
|.....++|.+..+..|..++..++.. .+.++|+.|+||||+|+.+++........... .+....+ ...+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~---pCg~C~s----C~~i~~ 86 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE---PCNECTS----CLEITK 86 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc---ccCCCcH----HHHHHc
Confidence 345677899999999999999877754 57999999999999999999886542111100 0000000 111111
Q ss_pred HhCCCCC-----CCCCHHHHHHHHHHHH----hcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEE-E
Q 036977 233 DLGMKFD-----LNDSIHHRASRLRERL----KQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTII-L 300 (693)
Q Consensus 233 ~l~~~~~-----~~~~~~~~~~~l~~~L----~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~Ii-v 300 (693)
......- .....++ +..+.+.+ ..++.-++|+|+++... .++.+...+.. ......+| .
T Consensus 87 g~~~dviEIdaas~~gVd~-IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE--------Pp~~viFILa 157 (484)
T PRK14956 87 GISSDVLEIDAASNRGIEN-IRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE--------PPAHIVFILA 157 (484)
T ss_pred cCCccceeechhhcccHHH-HHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc--------CCCceEEEee
Confidence 1110000 0011111 11222222 12356799999998663 35554333321 22344444 4
Q ss_pred ecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 301 TSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 301 TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
||....+.......-..|.+.+++.++..+.+.+.+... ...-..+....|++.++|-+-.
T Consensus 158 Tte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~E----------------gi~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 158 TTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIE----------------NVQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred cCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCChHHH
Confidence 544444433323334579999999998888887776432 1122345678899999987753
No 44
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.34 E-value=2.1e-05 Score=87.92 Aligned_cols=174 Identities=19% Similarity=0.132 Sum_probs=106.8
Q ss_pred CccccchHHHHHHHHHHHhc----C-CceEEEEEecCCCcHHHHHHHHHHHhhcc---CCCC--EEEEEEecCCCChHHH
Q 036977 157 NEAFDSRMKVFQDVMEALKD----D-KLNIIGVYGMGGVGKTTLVKQVAKKVMED---KLID--KVVMAEVTQNPDPQKI 226 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~~ 226 (693)
++.+.||+++++.|...|.. . ...++.|+|++|.|||+.++.|.++.... .... .+++|++....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 35678999999999988852 2 33577899999999999999999876432 1222 3677888777788889
Q ss_pred HHHHHHHhCCCCC-CCCCHHHHHHHHHHHHhc--CCcEEEEEeCCCCccCcc-ccCCCCCCcccccccccCCCeEEEE--
Q 036977 227 QDKLASDLGMKFD-LNDSIHHRASRLRERLKQ--EKRVLIILDNIWTKLELD-AVGIPSGDVDEKDREDDQRRCTIIL-- 300 (693)
Q Consensus 227 ~~~i~~~l~~~~~-~~~~~~~~~~~l~~~L~~--~k~~LlVlDdv~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~Iiv-- 300 (693)
+..|.+++....+ ...........+...+.. ....+||||+++....-. .+ +..+++.....+++|++
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDV------LYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKV------LFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHH------HHHHHHHhhccCCeEEEEE
Confidence 9999988843332 223334444555555422 134699999998653100 10 00111101223444433
Q ss_pred ecCChhhh-------hhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 301 TSRSRDLL-------CIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 301 TtR~~~v~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
+|...... ...+. ...+...|++.++-.+++..++.
T Consensus 908 ISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred ecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHH
Confidence 34322211 11111 22466799999999999999875
No 45
>PRK08727 hypothetical protein; Validated
Probab=98.33 E-value=6.6e-06 Score=81.37 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=85.9
Q ss_pred ccccchH-HHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCC
Q 036977 158 EAFDSRM-KVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGM 236 (693)
Q Consensus 158 ~~~~gR~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (693)
+.|++.. ..+..+.....+.....+.|+|.+|+|||.|++.+++....+ ...+.|+++.+ ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~~----- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRLR----- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhHH-----
Confidence 3344333 333333333333344679999999999999999999987654 23566765432 111110
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC---ccccCCCCCCcccccccccCCCeEEEEecCChhhh-----
Q 036977 237 KFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE---LDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL----- 308 (693)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~----- 308 (693)
...+.+. +.-+||+||++.... |... ++.++......+..||+||+...-.
T Consensus 86 -------------~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~------lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~ 144 (233)
T PRK08727 86 -------------DALEALE--GRSLVALDGLESIAGQREDEVA------LFDFHNRARAAGITLLYTARQMPDGLALVL 144 (233)
T ss_pred -------------HHHHHHh--cCCEEEEeCcccccCChHHHHH------HHHHHHHHHHcCCeEEEECCCChhhhhhhh
Confidence 1122232 346999999975532 2211 1122222233466799999864321
Q ss_pred ---hhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 309 ---CIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 309 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
...+.....+.+++++.++..+++.+.+.
T Consensus 145 ~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 145 PDLRSRLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred HHHHHHHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 11233356899999999999999998775
No 46
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=8.4e-06 Score=88.10 Aligned_cols=180 Identities=11% Similarity=0.058 Sum_probs=112.2
Q ss_pred CCCccccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHHHHhhcc-------------------CCCCEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKKVMED-------------------KLIDKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w 214 (693)
....+++|.+..++.+...+..++.. .+.++|+.|+||||+|+.+++..... +.+..++.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 45677899999999999888777654 78999999999999999998753211 11223455
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 292 (693)
++.+....+.++ +.+++......- ..++-++|+|+++... ..+.+...+.. .
T Consensus 90 idaas~~~vddI-R~Iie~~~~~P~-----------------~~~~KVvIIDEah~Ls~~A~NaLLK~LEe--------P 143 (491)
T PRK14964 90 IDAASNTSVDDI-KVILENSCYLPI-----------------SSKFKVYIIDEVHMLSNSAFNALLKTLEE--------P 143 (491)
T ss_pred EecccCCCHHHH-HHHHHHHHhccc-----------------cCCceEEEEeChHhCCHHHHHHHHHHHhC--------C
Confidence 666554444442 333333211100 1256789999997653 23333222222 3
Q ss_pred CCCeEEEEecC-ChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIILTSR-SRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~IivTtR-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
.+.+++|++|. ...+..........+.+.+++.++..+.+.+.+... ...-..+....|++.+
T Consensus 144 p~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~E----------------gi~i~~eAL~lIa~~s 207 (491)
T PRK14964 144 APHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKE----------------NIEHDEESLKLIAENS 207 (491)
T ss_pred CCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHc
Confidence 34565555553 334433223345689999999999999988887643 1222345667788888
Q ss_pred CCCcc
Q 036977 372 HSLKL 376 (693)
Q Consensus 372 ~glPL 376 (693)
+|-+-
T Consensus 208 ~GslR 212 (491)
T PRK14964 208 SGSMR 212 (491)
T ss_pred CCCHH
Confidence 88654
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=9e-06 Score=90.35 Aligned_cols=180 Identities=13% Similarity=0.100 Sum_probs=106.3
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccC------------------------CC
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDK------------------------LI 209 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~F 209 (693)
.....++|.+..+..|.+++..++. ..+.++|..|+||||+|+.+.+..-..+ .+
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 4566789999999999999987765 5668999999999999999977754211 01
Q ss_pred CEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccc
Q 036977 210 DKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEK 287 (693)
Q Consensus 210 ~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~ 287 (693)
..+++++......+.++ +++++.+.... ..++.-++|+|+++... ..+.+...+..
T Consensus 93 ~D~~eldaas~~~Vd~i-Reli~~~~~~p-----------------~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE---- 150 (618)
T PRK14951 93 VDYTELDAASNRGVDEV-QQLLEQAVYKP-----------------VQGRFKVFMIDEVHMLTNTAFNAMLKTLEE---- 150 (618)
T ss_pred CceeecCcccccCHHHH-HHHHHHHHhCc-----------------ccCCceEEEEEChhhCCHHHHHHHHHhccc----
Confidence 11222222222222221 22222111110 01245689999999663 34444333322
Q ss_pred cccccCCCeEEEEec-CChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHH
Q 036977 288 DREDDQRRCTIILTS-RSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELK 366 (693)
Q Consensus 288 ~~~~~~~~~~IivTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (693)
....+++|++| ....+..........+.+.+++.++..+.+.+.+... ......+....
T Consensus 151 ----PP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~e----------------gi~ie~~AL~~ 210 (618)
T PRK14951 151 ----PPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAE----------------NVPAEPQALRL 210 (618)
T ss_pred ----CCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHH
Confidence 23455555554 4444433333445689999999999988888876532 11122355677
Q ss_pred HhhhcCCCcc
Q 036977 367 VFPKLHSLKL 376 (693)
Q Consensus 367 I~~~c~glPL 376 (693)
|++.++|-+-
T Consensus 211 La~~s~GslR 220 (618)
T PRK14951 211 LARAARGSMR 220 (618)
T ss_pred HHHHcCCCHH
Confidence 7788877554
No 48
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.33 E-value=4.9e-08 Score=103.03 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=27.5
Q ss_pred hcccccccccccCccccccccCCCccc-------ccCCCCCCccc--ccCcceeeecCC
Q 036977 512 IQKCYEEMIGFRDIKDLQLSHFPRLQE-------IWHGQALPVSF--FNNLRELVVDDC 561 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~~~~L~~-------~~~~~~~~~~~--~~~L~~L~i~~c 561 (693)
.++...|.+++|+++.+|.+.|-+|.. ......+|+.. +.+|++|.+++.
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 455566677777777777666555541 12223444432 345666666553
No 49
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.30 E-value=1.6e-05 Score=84.51 Aligned_cols=179 Identities=12% Similarity=0.097 Sum_probs=106.7
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhcc--------------------CCCCEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMED--------------------KLIDKVV 213 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 213 (693)
.....++|.++.++.+..++..++. ..+.++|++|+||||+|+.+.+..... .+++. +
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 4556789999999999999976654 567899999999999999998885422 12222 3
Q ss_pred EEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccc
Q 036977 214 MAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDRED 291 (693)
Q Consensus 214 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 291 (693)
+++.+......+ .+++...+..... .+++-++|+|+++... ..+.+...+..
T Consensus 90 ~~~~~~~~~~~~-~~~l~~~~~~~p~-----------------~~~~~vviidea~~l~~~~~~~Ll~~le~-------- 143 (355)
T TIGR02397 90 EIDAASNNGVDD-IREILDNVKYAPS-----------------SGKYKVYIIDEVHMLSKSAFNALLKTLEE-------- 143 (355)
T ss_pred EeeccccCCHHH-HHHHHHHHhcCcc-----------------cCCceEEEEeChhhcCHHHHHHHHHHHhC--------
Confidence 332221112111 2223222211110 1245689999987552 23333222221
Q ss_pred cCCCeEEEEecCChh-hhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhh
Q 036977 292 DQRRCTIILTSRSRD-LLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPK 370 (693)
Q Consensus 292 ~~~~~~IivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 370 (693)
....+.+|++|.+.. +..........++..+++.++..+.+...+... ...-..+.+..+++.
T Consensus 144 ~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~----------------g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 144 PPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKE----------------GIKIEDEALELIARA 207 (355)
T ss_pred CccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHH
Confidence 234566666665544 222222334578899999999988888877532 111224667778888
Q ss_pred cCCCcc
Q 036977 371 LHSLKL 376 (693)
Q Consensus 371 c~glPL 376 (693)
++|-|.
T Consensus 208 ~~g~~~ 213 (355)
T TIGR02397 208 ADGSLR 213 (355)
T ss_pred cCCChH
Confidence 888775
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.1e-05 Score=83.95 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=111.6
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhh----ccCCCCEEEEEEe-cCCCChHHHHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVM----EDKLIDKVVMAEV-TQNPDPQKIQDKLA 231 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~v-s~~~~~~~~~~~i~ 231 (693)
..++|.+..++.+..++..++. ....++|+.|+||||+|+.+++..- ...|+|...|... +......+ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 4678999999999999977654 5668999999999999999998753 2346666555442 23333344 33344
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cCccccCCCCCCcccccccccCCCeEEEEecCChhhh-
Q 036977 232 SDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK--LELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL- 308 (693)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~- 308 (693)
+.+...... +++-++|+|+++.. ..++.+...+.+ ...++.+|++|.+....
T Consensus 83 ~~~~~~p~~-----------------~~~kv~iI~~ad~m~~~a~naLLK~LEe--------pp~~t~~il~~~~~~~ll 137 (313)
T PRK05564 83 EEVNKKPYE-----------------GDKKVIIIYNSEKMTEQAQNAFLKTIEE--------PPKGVFIILLCENLEQIL 137 (313)
T ss_pred HHHhcCccc-----------------CCceEEEEechhhcCHHHHHHHHHHhcC--------CCCCeEEEEEeCChHhCc
Confidence 443322111 24567777776543 456666555544 55678888888766432
Q ss_pred hhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 309 CIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 309 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
.........+.+.+++.++....+.+..... ..+.+..++..++|.|.
T Consensus 138 ~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~--------------------~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 138 DTIKSRCQIYKLNRLSKEEIEKFISYKYNDI--------------------KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred HHHHhhceeeeCCCcCHHHHHHHHHHHhcCC--------------------CHHHHHHHHHHcCCCHH
Confidence 2212334689999999999877776553211 12346678888999885
No 51
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=6.5e-06 Score=91.66 Aligned_cols=181 Identities=13% Similarity=0.103 Sum_probs=106.0
Q ss_pred CCCccccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHHHHhhccCC-------------------CCEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKKVMEDKL-------------------IDKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 214 (693)
.....++|.+..++.|...+..++.. .+.++|..|+||||+|+.+++....... |...+.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 45677899999999999999877654 4689999999999999999887644211 111122
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 292 (693)
++......+++ .+++.+. +...-..+++-++|+|+++... ..+.+...+.. .
T Consensus 93 idaas~~~Vdd-iR~li~~-----------------~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE--------P 146 (647)
T PRK07994 93 IDAASRTKVED-TRELLDN-----------------VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--------P 146 (647)
T ss_pred ecccccCCHHH-HHHHHHH-----------------HHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc--------C
Confidence 22221111111 1222211 1111112366799999998653 33333222211 2
Q ss_pred CCCeEEEE-ecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIIL-TSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~Iiv-TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
...+++|+ ||....+..........+.+.+++.++..+.+.+.+... ...........|++.+
T Consensus 147 p~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e----------------~i~~e~~aL~~Ia~~s 210 (647)
T PRK07994 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAE----------------QIPFEPRALQLLARAA 210 (647)
T ss_pred CCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHc
Confidence 23444444 444444432223334689999999999999888776422 1112234556788888
Q ss_pred CCCccc
Q 036977 372 HSLKLE 377 (693)
Q Consensus 372 ~glPLa 377 (693)
+|-+-.
T Consensus 211 ~Gs~R~ 216 (647)
T PRK07994 211 DGSMRD 216 (647)
T ss_pred CCCHHH
Confidence 887753
No 52
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.27 E-value=7e-06 Score=93.32 Aligned_cols=149 Identities=20% Similarity=0.288 Sum_probs=87.4
Q ss_pred CCCCccccchHHHHH---HHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHH
Q 036977 154 GKDNEAFDSRMKVFQ---DVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKL 230 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 230 (693)
|.....|+|++..+. .+...+..+....+.++|++|+||||+|+.+++..... |. .++.+. ....+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~--f~---~lna~~-~~i~d----- 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH--FS---SLNAVL-AGVKD----- 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCc--ce---eehhhh-hhhHH-----
Confidence 345677899998874 56666777777788999999999999999999875432 31 111110 01111
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCc--cCccccCCCCCCcccccccccCCCeEEEEe--cCCh
Q 036977 231 ASDLGMKFDLNDSIHHRASRLRERLK-QEKRVLIILDNIWTK--LELDAVGIPSGDVDEKDREDDQRRCTIILT--SRSR 305 (693)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~IivT--tR~~ 305 (693)
..+......+.+. .+++.++++||++.. .+.+.+... ...+..++++ |.+.
T Consensus 93 -------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~-----------lE~g~IiLI~aTTenp 148 (725)
T PRK13341 93 -------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW-----------VENGTITLIGATTENP 148 (725)
T ss_pred -------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH-----------hcCceEEEEEecCCCh
Confidence 1111112222221 125679999999854 233333221 2335545543 3332
Q ss_pred h--hhhhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 306 D--LLCIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 306 ~--v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
. +..........+.+++++.++...++.+.+.
T Consensus 149 ~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 149 YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred HhhhhhHhhccccceecCCCCHHHHHHHHHHHHH
Confidence 1 1111122245799999999999999987764
No 53
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=8.5e-06 Score=89.40 Aligned_cols=180 Identities=13% Similarity=0.094 Sum_probs=108.9
Q ss_pred CCCccccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHHHHhhccC-------------------CCCEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKKVMEDK-------------------LIDKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 214 (693)
.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++...... .|..++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 45677899999999999999877654 568999999999999999998764321 2223444
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 292 (693)
++.+....+.++ +++++.+.... ..++.-++|+|+++... ..+.+...+.. .
T Consensus 93 idaas~~~v~~i-R~l~~~~~~~p-----------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEe--------p 146 (509)
T PRK14958 93 VDAASRTKVEDT-RELLDNIPYAP-----------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEE--------P 146 (509)
T ss_pred EcccccCCHHHH-HHHHHHHhhcc-----------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhc--------c
Confidence 544444444432 33433332211 11356789999998653 33333222222 2
Q ss_pred CCCeEEEEecCC-hhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIILTSRS-RDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~IivTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
...+++|++|.+ ..+..........+++.+++.++....+.+.+... ...-..+....|++.+
T Consensus 147 p~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~e----------------gi~~~~~al~~ia~~s 210 (509)
T PRK14958 147 PSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEE----------------NVEFENAALDLLARAA 210 (509)
T ss_pred CCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHc
Confidence 335656655543 33332222334578899999988877776665422 1111234566788888
Q ss_pred CCCcc
Q 036977 372 HSLKL 376 (693)
Q Consensus 372 ~glPL 376 (693)
+|-+-
T Consensus 211 ~GslR 215 (509)
T PRK14958 211 NGSVR 215 (509)
T ss_pred CCcHH
Confidence 88664
No 54
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=9.8e-06 Score=88.97 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=104.3
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCCC-------------------CEEE
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKLI-------------------DKVV 213 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~~~~ 213 (693)
|.....++|++..++.+..++..++. +.+.++|+.|+||||+|+.+++.....+.. ...+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Dii 91 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIV 91 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceE
Confidence 34567789999999999999876554 568899999999999999999886432111 0122
Q ss_pred EEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cCccccCCCCCCcccccccc
Q 036977 214 MAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK--LELDAVGIPSGDVDEKDRED 291 (693)
Q Consensus 214 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~ 291 (693)
+++.+....+.++ +.+.+.+. ..-..+++-++|+|+++.. ..++.+...+..
T Consensus 92 eIdaas~igVd~I-ReIi~~~~-----------------~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-------- 145 (605)
T PRK05896 92 ELDAASNNGVDEI-RNIIDNIN-----------------YLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-------- 145 (605)
T ss_pred EeccccccCHHHH-HHHHHHHH-----------------hchhhCCcEEEEEechHhCCHHHHHHHHHHHHh--------
Confidence 2222221222211 22222111 0000124457999999864 233333222211
Q ss_pred cCCCeEEEEec-CChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhh
Q 036977 292 DQRRCTIILTS-RSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPK 370 (693)
Q Consensus 292 ~~~~~~IivTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 370 (693)
....+.+|++| ....+..........+++.+++.++....+...+... ...-..+.+..+++.
T Consensus 146 Pp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~ke----------------gi~Is~eal~~La~l 209 (605)
T PRK05896 146 PPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKE----------------KIKIEDNAIDKIADL 209 (605)
T ss_pred CCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHH
Confidence 22345454444 4434432223334589999999999998888876432 111224556778888
Q ss_pred cCCCcc
Q 036977 371 LHSLKL 376 (693)
Q Consensus 371 c~glPL 376 (693)
++|-+-
T Consensus 210 S~GdlR 215 (605)
T PRK05896 210 ADGSLR 215 (605)
T ss_pred cCCcHH
Confidence 888554
No 55
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=8.4e-06 Score=87.39 Aligned_cols=197 Identities=15% Similarity=0.114 Sum_probs=106.3
Q ss_pred CCCccccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEE-ecCCCChHHHHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAE-VTQNPDPQKIQDKLAS 232 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~ 232 (693)
.....++|.+..++.|..++.+++++ .+.++|+.|+||||+|..+++.......++...|.. .......-...+.+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 45567889999999999999877664 488999999999999999998875422111110100 0000000011111111
Q ss_pred HhCCC-----CCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEe
Q 036977 233 DLGMK-----FDLNDSIHHRASRLRERLK----QEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILT 301 (693)
Q Consensus 233 ~l~~~-----~~~~~~~~~~~~~l~~~L~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivT 301 (693)
..... .......++.. .+.+.+. .+++-++|+|+++... .++.+...+.+ ..+.+.+|++
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe--------p~~~t~~Il~ 163 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE--------PPPHAIFIFA 163 (397)
T ss_pred CCCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc--------CCCCeEEEEE
Confidence 00000 00001112221 2222221 1255789999998653 34444333322 3345555555
Q ss_pred c-CChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 302 S-RSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 302 t-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
| +...+..........+++.+++.++..+.+...+... ...-..+.+..|++.++|-+-
T Consensus 164 t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~----------------g~~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 164 TTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE----------------GISVDADALQLIGRKAQGSMR 223 (397)
T ss_pred eCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCCCHH
Confidence 4 4333322111223478899999999888887766422 112234667788888888653
No 56
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.24 E-value=1.2e-05 Score=79.68 Aligned_cols=140 Identities=15% Similarity=0.181 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCC
Q 036977 164 MKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDS 243 (693)
Q Consensus 164 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 243 (693)
...+..+..+......+.+.|+|+.|+|||+|++.+++..... -..+.|+.+.....
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~--------------------- 86 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW--------------------- 86 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh---------------------
Confidence 3344555555444555789999999999999999999987643 34566766643110
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCc---cCccccCCCCCCcccccccccCCC-eEEEEecCChhhh--------hhh
Q 036977 244 IHHRASRLRERLKQEKRVLIILDNIWTK---LELDAVGIPSGDVDEKDREDDQRR-CTIILTSRSRDLL--------CID 311 (693)
Q Consensus 244 ~~~~~~~l~~~L~~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~~~~~~~-~~IivTtR~~~v~--------~~~ 311 (693)
....+.+.+.. .-++++||++.. ..|+.. ++..+......| .++|+||+...-. ...
T Consensus 87 ---~~~~~~~~~~~--~dlliiDdi~~~~~~~~~~~~------lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SR 155 (235)
T PRK08084 87 ---FVPEVLEGMEQ--LSLVCIDNIECIAGDELWEMA------IFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASR 155 (235)
T ss_pred ---hhHHHHHHhhh--CCEEEEeChhhhcCCHHHHHH------HHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHH
Confidence 00112222222 248899999754 233321 111111112233 4699999865321 122
Q ss_pred cCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 312 MNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 312 ~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
+....++.+++++.++-.+++.+.+.
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHHHHHH
Confidence 44567999999999999999887664
No 57
>PRK09087 hypothetical protein; Validated
Probab=98.23 E-value=1.6e-05 Score=77.94 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=82.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
..+.+.|+|++|+|||+|++.+++.... .|++.. .+...++ ..+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~---------------------~~~~~ 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAA---------------------NAAAE 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHH---------------------Hhhhc
Confidence 4567999999999999999998876432 133222 1111111 11111
Q ss_pred CCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhh--------hhhhcCCCcEEEcCCCCHHHHH
Q 036977 258 EKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL--------LCIDMNSQKIFWIDALSKEEAL 329 (693)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v--------~~~~~~~~~~~~l~~L~~~ea~ 329 (693)
-++++||++.... .+ ..++..+......|..||+|++...- ....+.....+++++++.++-.
T Consensus 89 ---~~l~iDDi~~~~~-~~-----~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~ 159 (226)
T PRK09087 89 ---GPVLIEDIDAGGF-DE-----TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLS 159 (226)
T ss_pred ---CeEEEECCCCCCC-CH-----HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHH
Confidence 3788899975421 00 01233333334557789999975322 1223455679999999999999
Q ss_pred HHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCC
Q 036977 330 HLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSL 374 (693)
Q Consensus 330 ~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl 374 (693)
+++.+.+... ...--+++...|++.+.|-
T Consensus 160 ~iL~~~~~~~----------------~~~l~~ev~~~La~~~~r~ 188 (226)
T PRK09087 160 QVIFKLFADR----------------QLYVDPHVVYYLVSRMERS 188 (226)
T ss_pred HHHHHHHHHc----------------CCCCCHHHHHHHHHHhhhh
Confidence 9999888532 1122245666677766553
No 58
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=4.1e-06 Score=86.39 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=63.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC--ChHHHHHHHHHHhCCCCCCCCCHHH-------HH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP--DPQKIQDKLASDLGMKFDLNDSIHH-------RA 248 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~-------~~ 248 (693)
.-+-.+|+|++|+||||||+.|++....+ +|+.++||.+.+.+ .+.++++.+...+-....+ .+... ..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d-~~~~~~~~~a~~~i 245 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD-EPAERHVQVAEMVI 245 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC-CCHHHHHHHHHHHH
Confidence 34678999999999999999999998876 89999999999887 6777777775322111111 11211 12
Q ss_pred HHHHHHHhcCCcEEEEEeCCCCc
Q 036977 249 SRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 249 ~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
.........+++.+|++|++...
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHH
Confidence 22222223458999999998754
No 59
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.7e-05 Score=83.02 Aligned_cols=179 Identities=12% Similarity=0.126 Sum_probs=102.4
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhcc------CCCCE-EEEEEecCCCChHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMED------KLIDK-VVMAEVTQNPDPQKI 226 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~-~~wv~vs~~~~~~~~ 226 (693)
.....++|.+..++.+...+..+.. +.+.++|++|+||||+|+.+.+..... ..|.. ++.++........+
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 92 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD- 92 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-
Confidence 4556789999999999999977654 588899999999999999998876431 11221 12121111111222
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--ccccCCCCCCcccccccccCCCeEEEEec-C
Q 036977 227 QDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--LDAVGIPSGDVDEKDREDDQRRCTIILTS-R 303 (693)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~IivTt-R 303 (693)
.+.+++.+.... .. +++-++++|+++.... ++.+...+.. ....+.+|++| .
T Consensus 93 i~~l~~~~~~~p----------------~~-~~~kiviIDE~~~l~~~~~~~ll~~le~--------~~~~~~~Il~~~~ 147 (367)
T PRK14970 93 IRNLIDQVRIPP----------------QT-GKYKIYIIDEVHMLSSAAFNAFLKTLEE--------PPAHAIFILATTE 147 (367)
T ss_pred HHHHHHHHhhcc----------------cc-CCcEEEEEeChhhcCHHHHHHHHHHHhC--------CCCceEEEEEeCC
Confidence 222222221110 01 2456899999875432 3333211111 22344555544 3
Q ss_pred ChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCc
Q 036977 304 SRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLK 375 (693)
Q Consensus 304 ~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 375 (693)
...+..........++..+++.++....+...+... ...-..+....++..++|-+
T Consensus 148 ~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~----------------g~~i~~~al~~l~~~~~gdl 203 (367)
T PRK14970 148 KHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKE----------------GIKFEDDALHIIAQKADGAL 203 (367)
T ss_pred cccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHhCCCCH
Confidence 333322222334588999999999988888877533 11122456677777777643
No 60
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.21 E-value=7.8e-06 Score=95.23 Aligned_cols=250 Identities=13% Similarity=0.106 Sum_probs=138.2
Q ss_pred ccchHHHHHHHHHHHh---cCCceEEEEEecCCCcHHHHHHHHHHHhhcc-CCCCEEEEEEecCCCC---hHHHHHHHHH
Q 036977 160 FDSRMKVFQDVMEALK---DDKLNIIGVYGMGGVGKTTLVKQVAKKVMED-KLIDKVVMAEVTQNPD---PQKIQDKLAS 232 (693)
Q Consensus 160 ~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~---~~~~~~~i~~ 232 (693)
++||+.+++.|...+. .+...++.+.|.+|+|||+++++|......+ ++|-.-.+-....+.. ..+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6899999999999885 3456799999999999999999999987765 2221111111111111 1222233332
Q ss_pred H-------------------hCCCCCC----------------------CCCHHH-----HHHHHHHHHhcCCcEEEEEe
Q 036977 233 D-------------------LGMKFDL----------------------NDSIHH-----RASRLRERLKQEKRVLIILD 266 (693)
Q Consensus 233 ~-------------------l~~~~~~----------------------~~~~~~-----~~~~l~~~L~~~k~~LlVlD 266 (693)
+ +|..... +..... ....+......+++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 2 2221100 000011 12233444445679999999
Q ss_pred CCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCCh-hhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhcc
Q 036977 267 NIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSR-DLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCE 343 (693)
Q Consensus 267 dv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 343 (693)
|++=.+ .++-+....... . +.....+..-.+.|.+.. ............+.|.||+..+...+........
T Consensus 162 DlhWaD~~SL~lL~~lm~~~-~-~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~---- 235 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRI-A-IGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT---- 235 (849)
T ss_pred cccccChhHHHHHHHHHHhc-c-hhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc----
Confidence 995221 111110000000 0 000001111123333332 1112223345699999999999999998887642
Q ss_pred ccccccccCCCCCCCchhhHHHHHhhhcCCCccc------ccccc----------------cccc---cccccccchhcc
Q 036977 344 SMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE------WLPEL----------------TSFA---NTGQIHSDLVVE 398 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa------wl~~~----------------~~~~---~~~~i~~~l~~s 398 (693)
.....+....|.++..|.|+. |+... ..-. ..+.+...+..-
T Consensus 236 -------------~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~r 302 (849)
T COG3899 236 -------------KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAAR 302 (849)
T ss_pred -------------ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHH
Confidence 233457889999999999998 31111 0000 111233346777
Q ss_pred ccCchhHhhhhhhhcccccCCC-Ccchhhhcc
Q 036977 399 FPSLLNLEIHGCNNMLRFISTS-SPADTLHSE 429 (693)
Q Consensus 399 y~~L~~~~lk~cfl~~~~fp~~-~~~~Li~lw 429 (693)
.+.||. ..+......++++.. +...|...+
T Consensus 303 l~kL~~-~t~~Vl~~AA~iG~~F~l~~La~l~ 333 (849)
T COG3899 303 LQKLPG-TTREVLKAAACIGNRFDLDTLAALA 333 (849)
T ss_pred HhcCCH-HHHHHHHHHHHhCccCCHHHHHHHH
Confidence 889987 778888888888876 555444444
No 61
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=2e-05 Score=87.46 Aligned_cols=180 Identities=12% Similarity=0.087 Sum_probs=104.4
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCC-------------------CCEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKL-------------------IDKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 214 (693)
.....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+.+....... |..++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 4567889999999999999987765 56799999999999999999887532211 111223
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--ccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--LDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~ 292 (693)
++.+....+.. +++++... ...-..+++-++|+|+++.... .+.+...+.. .
T Consensus 93 idaAs~~gVd~-IRelle~a-----------------~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE--------P 146 (709)
T PRK08691 93 IDAASNTGIDN-IREVLENA-----------------QYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE--------P 146 (709)
T ss_pred EeccccCCHHH-HHHHHHHH-----------------HhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh--------C
Confidence 33222222221 12222211 0000112567999999976532 2222111111 2
Q ss_pred CCCeEEEEecCCh-hhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIILTSRSR-DLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~IivTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
...+++|++|.+. .+.....+....+.+.+++.++....+.+.+... ...-.......|++.+
T Consensus 147 p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kE----------------gi~id~eAL~~Ia~~A 210 (709)
T PRK08691 147 PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSE----------------KIAYEPPALQLLGRAA 210 (709)
T ss_pred CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHc----------------CCCcCHHHHHHHHHHh
Confidence 2345566665443 3322222233478888999999988888776532 1112235667788888
Q ss_pred CCCcc
Q 036977 372 HSLKL 376 (693)
Q Consensus 372 ~glPL 376 (693)
+|-+.
T Consensus 211 ~GslR 215 (709)
T PRK08691 211 AGSMR 215 (709)
T ss_pred CCCHH
Confidence 87664
No 62
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.18 E-value=5.6e-07 Score=95.25 Aligned_cols=158 Identities=16% Similarity=0.269 Sum_probs=80.9
Q ss_pred hhhcccccccccccCcccccccc--CCCcccc------cCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCE
Q 036977 510 STIQKCYEEMIGFRDIKDLQLSH--FPRLQEI------WHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRY 581 (693)
Q Consensus 510 ~~~~~l~~l~~~~~~l~~l~~~~--~~~L~~~------~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~ 581 (693)
..++++.+|++.+|.+..+.... +|.|+.+ -....+|+..| .|+.|++.+.+.......|..+.+-+++-+
T Consensus 52 ~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 35677888888888877665432 5555522 12235565543 455555555444444445556666666666
Q ss_pred EEecCCCCCc--------cccccceeccCCCCcccc---------------------------cCCCCCcCEeecCCCcC
Q 036977 582 LEVRNCDSLE--------EVLHLEELNAKEEHIGPL---------------------------FPRLSWLRLIDLPKLKR 626 (693)
Q Consensus 582 L~l~~c~~l~--------~l~~L~~L~l~~~~l~~~---------------------------~~~L~~L~~L~L~~c~~ 626 (693)
|++++.. ++ +|..|-+|++++|.++.+ ++.|++|++|.+++-.+
T Consensus 131 LNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 131 LNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 6665442 22 122233333333333222 34445555555544221
Q ss_pred -cccccccccCCCCcCEEecccccccccccccc---cccceeeccccc
Q 036977 627 -FYNFTGNIIELPELRYLTIENCPDMETFISNS---TSVLHMTADNKE 670 (693)
Q Consensus 627 -l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~~---~~l~~l~~~~~~ 670 (693)
+..+|.++..|.||+.++++ |.+|..+|.-. .+|..|+.++..
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hhhcCCCchhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCc
Confidence 34456666666666666666 44566666532 344444444433
No 63
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.7e-05 Score=87.56 Aligned_cols=180 Identities=13% Similarity=0.100 Sum_probs=105.1
Q ss_pred CCCccccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHHHHhhccC-------------------CCCEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKKVMEDK-------------------LIDKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 214 (693)
.....++|.+..++.+..++..++.. .+.++|+.|+||||+|+.+.+...... .|...++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 44567899999999999999876654 568999999999999999988764321 1222333
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--ccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--LDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~ 292 (693)
++.+......+ .++++....... ..+++-++|+|+++.... .+.+...+.. .
T Consensus 93 i~~~~~~~vd~-ir~l~~~~~~~p-----------------~~~~~kVvIIDEad~ls~~a~naLLK~LEe--------p 146 (527)
T PRK14969 93 VDAASNTQVDA-MRELLDNAQYAP-----------------TRGRFKVYIIDEVHMLSKSAFNAMLKTLEE--------P 146 (527)
T ss_pred eeccccCCHHH-HHHHHHHHhhCc-----------------ccCCceEEEEcCcccCCHHHHHHHHHHHhC--------C
Confidence 33332222222 223333221111 013567999999986532 3333222221 2
Q ss_pred CCCeEEEEecCCh-hhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIILTSRSR-DLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~IivTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
...+.+|++|.+. .+..........+++.+++.++..+.+.+.+... ...........|++.+
T Consensus 147 p~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~e----------------gi~~~~~al~~la~~s 210 (527)
T PRK14969 147 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQE----------------NIPFDATALQLLARAA 210 (527)
T ss_pred CCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHc
Confidence 2345555555433 3321111223588999999999888887766422 1112234567788888
Q ss_pred CCCcc
Q 036977 372 HSLKL 376 (693)
Q Consensus 372 ~glPL 376 (693)
+|-+-
T Consensus 211 ~Gslr 215 (527)
T PRK14969 211 AGSMR 215 (527)
T ss_pred CCCHH
Confidence 88664
No 64
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.2e-05 Score=86.38 Aligned_cols=196 Identities=15% Similarity=0.144 Sum_probs=104.2
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEE-ecCCCChHHHHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAE-VTQNPDPQKIQDKLAS 232 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~ 232 (693)
.....++|.+..+..+..++..+++ ..+.++|+.|+||||+|+.+++........+.-.|.. +......-...+.+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 4556789999999999999887665 4588999999999999999998865422111000100 0000000011111111
Q ss_pred HhCCC-----CCCCCCHHHHHHHHHHHH----hcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEE-E
Q 036977 233 DLGMK-----FDLNDSIHHRASRLRERL----KQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTII-L 300 (693)
Q Consensus 233 ~l~~~-----~~~~~~~~~~~~~l~~~L----~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~Ii-v 300 (693)
.-..+ .......++.. .+.+.+ -.+++-++|+||++... ..+.+...+.. ....+.+| +
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe--------Pp~~tv~IL~ 163 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE--------PPPHAIFIFA 163 (620)
T ss_pred cCCCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC--------CCCCeEEEEE
Confidence 00000 00001122222 122222 11256689999987653 23333222221 22344444 4
Q ss_pred ecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCc
Q 036977 301 TSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLK 375 (693)
Q Consensus 301 TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 375 (693)
|++...+..........++..+++.++....+.+.+... ...-..+.+..|++.++|-.
T Consensus 164 t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~e----------------gi~I~~eal~~La~~s~Gdl 222 (620)
T PRK14954 164 TTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAE----------------GIQIDADALQLIARKAQGSM 222 (620)
T ss_pred eCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHhCCCH
Confidence 544444433223445689999999999887777765422 11122456677888888744
No 65
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.15 E-value=3.2e-05 Score=87.17 Aligned_cols=174 Identities=14% Similarity=0.098 Sum_probs=102.2
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCC---EEEEEEecC---CCChHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLID---KVVMAEVTQ---NPDPQKIQD 228 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~---~~~~~~~~~ 228 (693)
...+.++|++..+..+...+.......+.|+|++|+||||+|+.+++.......+. ..-|+.+.. ..+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 44567889999999988888766677899999999999999999998875443331 223443321 112222111
Q ss_pred H---------------HHHHhCCCCC----------------C-CCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cCc
Q 036977 229 K---------------LASDLGMKFD----------------L-NDSIHHRASRLRERLKQEKRVLIILDNIWTK--LEL 274 (693)
Q Consensus 229 ~---------------i~~~l~~~~~----------------~-~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~--~~~ 274 (693)
. .+...+.... + ..-....+..+.+.+.. +++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCCcccc
Confidence 1 1122221100 0 01112345667777776 6677776665543 345
Q ss_pred cccCCCCCCcccccccccCCCeEEEE--ecCChhhhhh-hcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 275 DAVGIPSGDVDEKDREDDQRRCTIIL--TSRSRDLLCI-DMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~~Iiv--TtR~~~v~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
..+...+.. ..+...|++ ||++...... .......+.+.+++.++.++++.+.+.
T Consensus 310 ~~ik~~~~~--------~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 310 KYIKKLFEE--------GAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred hhhhhhccc--------CccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 555544443 334444444 5665432111 112234778899999999999998765
No 66
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.15 E-value=5.4e-05 Score=72.41 Aligned_cols=159 Identities=19% Similarity=0.116 Sum_probs=91.9
Q ss_pred HHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhcc--------------------CCCCEEEEEEec-CCCChHHH
Q 036977 169 DVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMED--------------------KLIDKVVMAEVT-QNPDPQKI 226 (693)
Q Consensus 169 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs-~~~~~~~~ 226 (693)
.+.+.+..++. ..+.++|+.|+||||+|+.+.+..... .+.+. .++... .....+ .
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~-~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVD-Q 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHH-H
Confidence 34555555555 678999999999999999998886432 12222 222221 112222 2
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCC
Q 036977 227 QDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRS 304 (693)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~ 304 (693)
.+++++.+..... .+.+-++|+||++... ..+.+...+.. ....+.+|++|++
T Consensus 81 i~~i~~~~~~~~~-----------------~~~~kviiide~~~l~~~~~~~Ll~~le~--------~~~~~~~il~~~~ 135 (188)
T TIGR00678 81 VRELVEFLSRTPQ-----------------ESGRRVVIIEDAERMNEAAANALLKTLEE--------PPPNTLFILITPS 135 (188)
T ss_pred HHHHHHHHccCcc-----------------cCCeEEEEEechhhhCHHHHHHHHHHhcC--------CCCCeEEEEEECC
Confidence 2233333321111 1256789999987653 23333222222 3345556666654
Q ss_pred h-hhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 305 R-DLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 305 ~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
. .+..........+.+.+++.++..+.+.+. +. . .+.+..|++.++|.|.
T Consensus 136 ~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--gi----------------~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 136 PEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--GI----------------S----EEAAELLLALAGGSPG 186 (188)
T ss_pred hHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--CC----------------C----HHHHHHHHHHcCCCcc
Confidence 4 222222233468999999999988877665 12 1 3567889999999875
No 67
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=5.3e-05 Score=79.61 Aligned_cols=195 Identities=11% Similarity=0.086 Sum_probs=108.9
Q ss_pred CCCCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEE----EEEecCCCChHHHH
Q 036977 153 DGKDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVV----MAEVTQNPDPQKIQ 227 (693)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~----wv~vs~~~~~~~~~ 227 (693)
.|.....++|.++..+.+.+.+..++. ..+.++|+.|+||+|+|..+.+..-.+....... -.++.. ...-...
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c 92 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVA 92 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHH
Confidence 344567789999999999999987765 4588999999999999999888764322110000 000000 0000111
Q ss_pred HHHHHHhCCC-------C-C------CCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--CccccCCCCCCcccc
Q 036977 228 DKLASDLGMK-------F-D------LNDSIHHRASRLRERLK----QEKRVLIILDNIWTKL--ELDAVGIPSGDVDEK 287 (693)
Q Consensus 228 ~~i~~~l~~~-------~-~------~~~~~~~~~~~l~~~L~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~ 287 (693)
+.+...-..+ . + .....++ +..+.+.+. .+.+.++|+|+++... ..+.+...+..
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe---- 167 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE---- 167 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc----
Confidence 1111110000 0 0 0011222 333334433 2366799999998653 23333222211
Q ss_pred cccccCCCeEEEEecCChh-hhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHH
Q 036977 288 DREDDQRRCTIILTSRSRD-LLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELK 366 (693)
Q Consensus 288 ~~~~~~~~~~IivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (693)
...++.+|++|.+.. +..........+.+.+++.++..+.+....... + ......
T Consensus 168 ----pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~------------------~--~~~~~~ 223 (365)
T PRK07471 168 ----PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL------------------P--DDPRAA 223 (365)
T ss_pred ----CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC------------------C--HHHHHH
Confidence 223556666666654 333323345689999999999999987764221 1 112267
Q ss_pred HhhhcCCCccc
Q 036977 367 VFPKLHSLKLE 377 (693)
Q Consensus 367 I~~~c~glPLa 377 (693)
++..++|.|..
T Consensus 224 l~~~s~Gsp~~ 234 (365)
T PRK07471 224 LAALAEGSVGR 234 (365)
T ss_pred HHHHcCCCHHH
Confidence 88899999984
No 68
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=0.00011 Score=76.76 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=112.0
Q ss_pred CCCCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCC--CCEEEEEEecCCCChHHHHHH
Q 036977 153 DGKDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKL--IDKVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~ 229 (693)
.|.....++|.++....+...+..++. ..+.|+|+.|+||||+|..+.+..-.... +... ............+.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 455677889999999999999987664 56899999999999999999988654210 1111 00111111112233
Q ss_pred HHHH-------hCCCCC-------CCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--CccccCCCCCCcccccc
Q 036977 230 LASD-------LGMKFD-------LNDSIHHRASRLRERLK----QEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDR 289 (693)
Q Consensus 230 i~~~-------l~~~~~-------~~~~~~~~~~~l~~~L~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~ 289 (693)
+... +..+.+ .....++ +..+.+++. .+++.++|+|+++... ..+.+...+..
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE------ 167 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE------ 167 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc------
Confidence 3221 100100 0112222 334444443 2466799999998653 22222221111
Q ss_pred cccCCCeEEEEecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhh
Q 036977 290 EDDQRRCTIILTSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFP 369 (693)
Q Consensus 290 ~~~~~~~~IivTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 369 (693)
-.....-|++|++...+..........+.+.+++.++..+++.+..... . -..+....|++
T Consensus 168 -pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-----------------~-~~~~~~~~i~~ 228 (351)
T PRK09112 168 -PPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-----------------G-SDGEITEALLQ 228 (351)
T ss_pred -CCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-----------------C-CCHHHHHHHHH
Confidence 0122333555544444433222334599999999999999988743211 1 12345678899
Q ss_pred hcCCCccc
Q 036977 370 KLHSLKLE 377 (693)
Q Consensus 370 ~c~glPLa 377 (693)
.++|.|..
T Consensus 229 ~s~G~pr~ 236 (351)
T PRK09112 229 RSKGSVRK 236 (351)
T ss_pred HcCCCHHH
Confidence 99999974
No 69
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=6.3e-05 Score=79.77 Aligned_cols=172 Identities=9% Similarity=0.025 Sum_probs=100.4
Q ss_pred ccccchHHHHHHHHHHHhcCC----------ceEEEEEecCCCcHHHHHHHHHHHhhcc-------------------CC
Q 036977 158 EAFDSRMKVFQDVMEALKDDK----------LNIIGVYGMGGVGKTTLVKQVAKKVMED-------------------KL 208 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~ 208 (693)
..++|.+..++.+..++..+. ...+.++|++|+|||++|+.+++..-.. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 467899999999999997653 4568899999999999999998764322 12
Q ss_pred CCEEEEEEec-CCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcc
Q 036977 209 IDKVVMAEVT-QNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVD 285 (693)
Q Consensus 209 F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~ 285 (693)
.|. .++... ....+.+ .+.+.+.+.... ..+++-++++|+++... ..+.+...+..
T Consensus 85 pD~-~~i~~~~~~i~i~~-iR~l~~~~~~~p-----------------~~~~~kViiIDead~m~~~aanaLLk~LEe-- 143 (394)
T PRK07940 85 PDV-RVVAPEGLSIGVDE-VRELVTIAARRP-----------------STGRWRIVVIEDADRLTERAANALLKAVEE-- 143 (394)
T ss_pred CCE-EEeccccccCCHHH-HHHHHHHHHhCc-----------------ccCCcEEEEEechhhcCHHHHHHHHHHhhc--
Confidence 221 222111 1111222 122222221111 11255688899998653 22222222211
Q ss_pred cccccccCCCeEEEEecCCh-hhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHH
Q 036977 286 EKDREDDQRRCTIILTSRSR-DLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIE 364 (693)
Q Consensus 286 ~~~~~~~~~~~~IivTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (693)
...++.+|++|.+. .+..........+.+.+++.++..+.+..... . ..+.+
T Consensus 144 ------p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-~--------------------~~~~a 196 (394)
T PRK07940 144 ------PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-V--------------------DPETA 196 (394)
T ss_pred ------CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-C--------------------CHHHH
Confidence 23345555555554 44333233446899999999999888764321 1 13456
Q ss_pred HHHhhhcCCCccc
Q 036977 365 LKVFPKLHSLKLE 377 (693)
Q Consensus 365 ~~I~~~c~glPLa 377 (693)
..++..++|-|..
T Consensus 197 ~~la~~s~G~~~~ 209 (394)
T PRK07940 197 RRAARASQGHIGR 209 (394)
T ss_pred HHHHHHcCCCHHH
Confidence 7788999998864
No 70
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.14 E-value=4.9e-06 Score=95.10 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=75.0
Q ss_pred ccccccccccCccccccccCCCcccc----cCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC
Q 036977 514 KCYEEMIGFRDIKDLQLSHFPRLQEI----WHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS 589 (693)
Q Consensus 514 ~l~~l~~~~~~l~~l~~~~~~~L~~~----~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~ 589 (693)
+++.|.+.+|.+..+|.....+|+.+ .....+|...+.+|+.|.+.+|. +.. .|..+. ++|+.|++++|.
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~-Lt~--LP~~lp--~sL~~L~Ls~N~- 315 (754)
T PRK15370 242 TIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNS-IRT--LPAHLP--SGITHLNVQSNS- 315 (754)
T ss_pred cccEEECcCCccCcCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCCc-ccc--Ccccch--hhHHHHHhcCCc-
Confidence 45566666666665554443333311 11223444444456666665542 221 122221 245555555542
Q ss_pred Ccc-----ccccceeccCCCCcccccCC-CCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccccc-cccc
Q 036977 590 LEE-----VLHLEELNAKEEHIGPLFPR-LSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISNS-TSVL 662 (693)
Q Consensus 590 l~~-----l~~L~~L~l~~~~l~~~~~~-L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~~-~~l~ 662 (693)
+.. .++|++|++++|.+..+... .++|+.|++++| .+..+|..+ .++|++|++++| +|..+|... .+|+
T Consensus 316 Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~l~~sL~ 391 (754)
T PRK15370 316 LTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKN-QITVLPETL--PPTITTLDVSRN-ALTNLPENLPAALQ 391 (754)
T ss_pred cccCCccccccceeccccCCccccCChhhcCcccEEECCCC-CCCcCChhh--cCCcCEEECCCC-cCCCCCHhHHHHHH
Confidence 221 23466666666555444211 246777777763 466666554 356777777777 466666543 3455
Q ss_pred eeecccccc
Q 036977 663 HMTADNKEA 671 (693)
Q Consensus 663 ~l~~~~~~~ 671 (693)
.|.+.++.-
T Consensus 392 ~LdLs~N~L 400 (754)
T PRK15370 392 IMQASRNNL 400 (754)
T ss_pred HHhhccCCc
Confidence 566555443
No 71
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=2.8e-05 Score=85.85 Aligned_cols=179 Identities=14% Similarity=0.068 Sum_probs=102.4
Q ss_pred CCCccccchHHHHHHHHHHHhcCC-ceEEEEEecCCCcHHHHHHHHHHHhhccCCC-------------------CEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLI-------------------DKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~~~~w 214 (693)
.....++|.+..++.|...+..++ ...+.++|+.|+||||+|+.+++........ ..+++
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~e 92 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVE 92 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 445678899999999998887766 4778899999999999999999886532111 01223
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 292 (693)
++......+.++ +.+.+.+ ...-..+++-++|+|+++... ..+.+...+.. .
T Consensus 93 Id~a~~~~Id~i-R~L~~~~-----------------~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE--------P 146 (624)
T PRK14959 93 IDGASNRGIDDA-KRLKEAI-----------------GYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE--------P 146 (624)
T ss_pred EecccccCHHHH-HHHHHHH-----------------HhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc--------c
Confidence 322211122111 1111111 111112356799999998652 23333222211 2
Q ss_pred CCCeEEEEecCC-hhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIILTSRS-RDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~IivTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
.....+|++|.+ ..+..........+++.+++.++....+...+... ...-..+.+..|++.+
T Consensus 147 ~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~e----------------gi~id~eal~lIA~~s 210 (624)
T PRK14959 147 PARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGRE----------------GVDYDPAAVRLIARRA 210 (624)
T ss_pred CCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHc
Confidence 234555555544 33332222233578999999999998888766432 1112235566677777
Q ss_pred CCCc
Q 036977 372 HSLK 375 (693)
Q Consensus 372 ~glP 375 (693)
+|-.
T Consensus 211 ~Gdl 214 (624)
T PRK14959 211 AGSV 214 (624)
T ss_pred CCCH
Confidence 7643
No 72
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.11 E-value=4.9e-05 Score=76.83 Aligned_cols=172 Identities=19% Similarity=0.172 Sum_probs=108.2
Q ss_pred CccccchHHHHHHHHHHHhcCC---ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHH
Q 036977 157 NEAFDSRMKVFQDVMEALKDDK---LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASD 233 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 233 (693)
.+.|.+|+..++.+...+.+.. +..|-|+|-+|.|||.+++.+.+.... ..+|+++-+-++...++..|+..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHH
Confidence 4567799999999999886543 355689999999999999999988733 36899999999999999999999
Q ss_pred hCCCCCCCCCHH---HHHHHHHHHHhc-------CCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecC
Q 036977 234 LGMKFDLNDSIH---HRASRLRERLKQ-------EKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSR 303 (693)
Q Consensus 234 l~~~~~~~~~~~---~~~~~l~~~L~~-------~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR 303 (693)
++..+......+ +........+.+ ++.++||||+++...+.+.. .++.++++..-...+...|+ ++-
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~--ll~~l~~L~el~~~~~i~ii-ls~ 156 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAI--LLQCLFRLYELLNEPTIVII-LSA 156 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchH--HHHHHHHHHHHhCCCceEEE-Eec
Confidence 963222211111 122222222221 35799999999877654443 12222222222233444343 333
Q ss_pred Chhhhhhh--cCCCc--EEEcCCCCHHHHHHHHHHhh
Q 036977 304 SRDLLCID--MNSQK--IFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 304 ~~~v~~~~--~~~~~--~~~l~~L~~~ea~~Lf~~~~ 336 (693)
........ ++... ++....-+.++..+++.+.-
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 22222111 34333 66677888888888876543
No 73
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=3.8e-05 Score=85.65 Aligned_cols=195 Identities=8% Similarity=0.065 Sum_probs=107.1
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCCCC--EEEEEEecCCCChHHHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKLID--KVVMAEVTQNPDPQKIQDKL 230 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i 230 (693)
|.....++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++......... ...+-. ...-.-.+.|
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~----cg~c~~C~~i 95 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL----CGVGEHCQAI 95 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc----CcccHHHHHH
Confidence 34567789999999999999987764 4688999999999999999998764321110 000000 0000011111
Q ss_pred HHHhCCCC-----CCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEE
Q 036977 231 ASDLGMKF-----DLNDSIHHRASRLRERLK----QEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTII 299 (693)
Q Consensus 231 ~~~l~~~~-----~~~~~~~~~~~~l~~~L~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~Ii 299 (693)
...-..+. ......++. ..+.+.+. ..++-++|+|+++... ..+.+...+.+ ....+.+|
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~I-ReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe--------Pp~~~~fI 166 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDI-REIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE--------PPPHVKFI 166 (598)
T ss_pred hcCCCCceEEecccccCCHHHH-HHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh--------CCCCeEEE
Confidence 11100000 000111111 11222221 1245689999997653 23333222222 23455555
Q ss_pred Eec-CChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 300 LTS-RSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 300 vTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
++| ....+..........+.+..++.++....+.+.+... ...-..+....|++.++|-+..
T Consensus 167 l~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~ke----------------gi~i~~eAl~lIa~~a~Gdlr~ 229 (598)
T PRK09111 167 FATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKE----------------GVEVEDEALALIARAAEGSVRD 229 (598)
T ss_pred EEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCCCHHH
Confidence 544 4444432222334589999999999998888876532 1122235677788888887653
No 74
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.11 E-value=1.9e-05 Score=77.09 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=85.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQE 258 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (693)
...+.|+|..|+|||.|.+++++.......-..++|++ ..++...+...+... ....+++.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~~~- 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRLRS- 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHHCT-
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc---------cchhhhhhhhc-
Confidence 45689999999999999999999977542223566754 345555565555321 22345555654
Q ss_pred CcEEEEEeCCCCccC---ccccCCCCCCcccccccccCCCeEEEEecCChhhh--------hhhcCCCcEEEcCCCCHHH
Q 036977 259 KRVLIILDNIWTKLE---LDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL--------CIDMNSQKIFWIDALSKEE 327 (693)
Q Consensus 259 k~~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~--------~~~~~~~~~~~l~~L~~~e 327 (693)
-=+|++||++.... |+.. ++.++......|.+||+|++..... ...+.....+++.+++.++
T Consensus 98 -~DlL~iDDi~~l~~~~~~q~~------lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 98 -ADLLIIDDIQFLAGKQRTQEE------LFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDED 170 (219)
T ss_dssp -SSEEEEETGGGGTTHHHHHHH------HHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHH
T ss_pred -CCEEEEecchhhcCchHHHHH------HHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHH
Confidence 46999999986532 2221 2223333345677899999665321 1224556799999999999
Q ss_pred HHHHHHHhhhh
Q 036977 328 ALHLAKLQHLE 338 (693)
Q Consensus 328 a~~Lf~~~~~~ 338 (693)
..+++.+.+..
T Consensus 171 r~~il~~~a~~ 181 (219)
T PF00308_consen 171 RRRILQKKAKE 181 (219)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 75
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=5.2e-05 Score=85.18 Aligned_cols=178 Identities=15% Similarity=0.118 Sum_probs=107.5
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhc---------------------cCCCCEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVME---------------------DKLIDKV 212 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~ 212 (693)
.....++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.+.+.... ..+|+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~- 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI- 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-
Confidence 3456789999999999999987765 45789999999999999998887531 123442
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccc
Q 036977 213 VMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDRE 290 (693)
Q Consensus 213 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 290 (693)
..++.+......++ ++++.++..... .+++-++|+|+++... ..+.+...+..
T Consensus 93 ~~ld~~~~~~vd~I-r~li~~~~~~P~-----------------~~~~KVvIIdea~~Ls~~a~naLLK~LEe------- 147 (614)
T PRK14971 93 HELDAASNNSVDDI-RNLIEQVRIPPQ-----------------IGKYKIYIIDEVHMLSQAAFNAFLKTLEE------- 147 (614)
T ss_pred EEecccccCCHHHH-HHHHHHHhhCcc-----------------cCCcEEEEEECcccCCHHHHHHHHHHHhC-------
Confidence 23333333333332 233333221111 1255689999988663 23333322221
Q ss_pred ccCCCeEEEE-ecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhh
Q 036977 291 DDQRRCTIIL-TSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFP 369 (693)
Q Consensus 291 ~~~~~~~Iiv-TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 369 (693)
...++.+|+ ||+...+..........++..+++.++....+.+.+... ......+.+..|++
T Consensus 148 -pp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~e----------------gi~i~~~al~~La~ 210 (614)
T PRK14971 148 -PPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKE----------------GITAEPEALNVIAQ 210 (614)
T ss_pred -CCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHH
Confidence 233455554 544444433323345689999999999988888776532 11122345677778
Q ss_pred hcCCCc
Q 036977 370 KLHSLK 375 (693)
Q Consensus 370 ~c~glP 375 (693)
.++|-.
T Consensus 211 ~s~gdl 216 (614)
T PRK14971 211 KADGGM 216 (614)
T ss_pred HcCCCH
Confidence 777744
No 76
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=5.7e-05 Score=83.76 Aligned_cols=180 Identities=13% Similarity=0.032 Sum_probs=104.6
Q ss_pred CCCccccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHHHHhhccCCC---------------------CEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKKVMEDKLI---------------------DKV 212 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---------------------~~~ 212 (693)
.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++........ ..+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 45677899999999999999877665 46899999999999999999875532111 112
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccc
Q 036977 213 VMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDRE 290 (693)
Q Consensus 213 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 290 (693)
+.++.+....+.++ +++.. .+...-...++-++|+|+++... ..+.+...+..
T Consensus 90 ieidaas~~gvd~i-Rel~~-----------------~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE------- 144 (584)
T PRK14952 90 VELDAASHGGVDDT-RELRD-----------------RAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE------- 144 (584)
T ss_pred EEeccccccCHHHH-HHHHH-----------------HHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-------
Confidence 23332222222221 22211 11111111255699999998552 33333222221
Q ss_pred ccCCCeEEE-EecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhh
Q 036977 291 DDQRRCTII-LTSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFP 369 (693)
Q Consensus 291 ~~~~~~~Ii-vTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 369 (693)
....+.+| +||....+..........+....++.++..+.+.+.+... ...-..+....|++
T Consensus 145 -pp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~e----------------gi~i~~~al~~Ia~ 207 (584)
T PRK14952 145 -PPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQE----------------GVVVDDAVYPLVIR 207 (584)
T ss_pred -CCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHH
Confidence 23344444 5555444433223345689999999999888887766532 11112345566777
Q ss_pred hcCCCcc
Q 036977 370 KLHSLKL 376 (693)
Q Consensus 370 ~c~glPL 376 (693)
..+|-+-
T Consensus 208 ~s~GdlR 214 (584)
T PRK14952 208 AGGGSPR 214 (584)
T ss_pred HcCCCHH
Confidence 7777553
No 77
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.10 E-value=1.2e-05 Score=85.55 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=92.7
Q ss_pred CCccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 156 DNEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
....+.|+++.++++.+.+.. ..++-+.++|++|+|||++|+.+++..... | +.+.
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~---- 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVV---- 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecc----
Confidence 345688999999999887631 134568999999999999999999976532 2 2221
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCc--cccCCCCC----Ccccccccc----c
Q 036977 223 PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLEL--DAVGIPSG----DVDEKDRED----D 292 (693)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~--~~l~~~~~----~~~~~~~~~----~ 292 (693)
...+.... ++ ........+.+..+...+.+|++||++....- ......-+ .+.+++... .
T Consensus 189 ~~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 189 GSELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred hHHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 11111111 11 11122333333333336789999999864210 00000000 000011000 2
Q ss_pred CCCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhhh
Q 036977 293 QRRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHLE 338 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~ 338 (693)
..+.+||.||.......... .....+.+...+.++..++|..++..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~ 308 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK 308 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc
Confidence 34677888888654332111 22457899999999999999887753
No 78
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.10 E-value=9.2e-06 Score=84.33 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=65.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC--CChHHHHHHHHHHhCCCCCC-CC-CH----HHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN--PDPQKIQDKLASDLGMKFDL-ND-SI----HHRAS 249 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~-~~-~~----~~~~~ 249 (693)
.-+.++|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.+...+-...-+ +. .. +...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 45789999999999999999999998765 8999999999866 68899999884433211111 11 11 11222
Q ss_pred HHHHHHhcCCcEEEEEeCCCCc
Q 036977 250 RLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 250 ~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
........+++.+|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 3333334468999999998754
No 79
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.09 E-value=1.9e-07 Score=93.96 Aligned_cols=157 Identities=20% Similarity=0.224 Sum_probs=105.8
Q ss_pred hcccccccccccCcccccccc--CCCcc----cccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEec
Q 036977 512 IQKCYEEMIGFRDIKDLQLSH--FPRLQ----EIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVR 585 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~--~~~L~----~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~ 585 (693)
.-.+..+...++++..+|.+. |.++. ...+...+|+... +.+.|.-.+|.+.-...+|..++.|.+|..|++.
T Consensus 136 ~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 136 LLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLETLPPELGGLESLELLYLR 214 (565)
T ss_pred HhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhhcCChhhcchhhhHHHHhh
Confidence 334444555566666666554 22222 1222234444322 3555555566555444678889999999998886
Q ss_pred CCC-----CCccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc
Q 036977 586 NCD-----SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 586 ~c~-----~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
+.+ .+..+..|++|+.+.|.++.+ ..+|.+|.+|||+. ++++++|.++..|.+|++|++++. .+.++|.
T Consensus 215 ~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~ 292 (565)
T KOG0472|consen 215 RNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPY 292 (565)
T ss_pred hcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-ccccCCc
Confidence 653 333455688899998887766 56899999999998 889999999999999999999987 5889998
Q ss_pred ccccc--ceeecccccc
Q 036977 657 NSTSV--LHMTADNKEA 671 (693)
Q Consensus 657 ~~~~l--~~l~~~~~~~ 671 (693)
..+++ ..|...|.|-
T Consensus 293 sLgnlhL~~L~leGNPl 309 (565)
T KOG0472|consen 293 SLGNLHLKFLALEGNPL 309 (565)
T ss_pred ccccceeeehhhcCCch
Confidence 77665 3344455444
No 80
>PRK05642 DNA replication initiation factor; Validated
Probab=98.08 E-value=8e-05 Score=73.66 Aligned_cols=125 Identities=17% Similarity=0.245 Sum_probs=78.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQE 258 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (693)
...+.|+|..|+|||.|++.+++....+ -..++|++..+ +... ...+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~~- 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLEQ- 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhhh-
Confidence 3678999999999999999999876543 24567776542 1110 0123444443
Q ss_pred CcEEEEEeCCCCc---cCccccCCCCCCcccccccccCCCeEEEEecCChhhh--------hhhcCCCcEEEcCCCCHHH
Q 036977 259 KRVLIILDNIWTK---LELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL--------CIDMNSQKIFWIDALSKEE 327 (693)
Q Consensus 259 k~~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~--------~~~~~~~~~~~l~~L~~~e 327 (693)
- =++|+||+... ..|+.. ++.++......|..||+|++...-. ...+....++.+++++.++
T Consensus 98 ~-d~LiiDDi~~~~~~~~~~~~------Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 98 Y-ELVCLDDLDVIAGKADWEEA------LFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDED 170 (234)
T ss_pred C-CEEEEechhhhcCChHHHHH------HHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHH
Confidence 2 37889999744 234331 1122222234567799988765421 1112334689999999999
Q ss_pred HHHHHHHhhh
Q 036977 328 ALHLAKLQHL 337 (693)
Q Consensus 328 a~~Lf~~~~~ 337 (693)
..+++..++.
T Consensus 171 ~~~il~~ka~ 180 (234)
T PRK05642 171 KLRALQLRAS 180 (234)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 81
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=4.8e-05 Score=87.73 Aligned_cols=180 Identities=10% Similarity=0.005 Sum_probs=105.0
Q ss_pred CCCccccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHHHHhhccCCC---------------------CEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKKVMEDKLI---------------------DKV 212 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---------------------~~~ 212 (693)
.....++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+.+........ ..+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 34567899999999999999877664 57899999999999999999887532111 112
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccc
Q 036977 213 VMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDRE 290 (693)
Q Consensus 213 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 290 (693)
++++......+.++ +++.+.+.. .-.. .++-++|||+++... ..+.|...+.+
T Consensus 92 ~eidaas~~~Vd~i-R~l~~~~~~----------------~p~~-~~~KV~IIDEad~lt~~a~NaLLK~LEE------- 146 (824)
T PRK07764 92 TEIDAASHGGVDDA-RELRERAFF----------------APAE-SRYKIFIIDEAHMVTPQGFNALLKIVEE------- 146 (824)
T ss_pred EEecccccCCHHHH-HHHHHHHHh----------------chhc-CCceEEEEechhhcCHHHHHHHHHHHhC-------
Confidence 23322222222221 112111110 0111 255689999998663 33333333222
Q ss_pred ccCCCeEEEEec-CChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhh
Q 036977 291 DDQRRCTIILTS-RSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFP 369 (693)
Q Consensus 291 ~~~~~~~IivTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 369 (693)
....+.+|++| ....+..........|.+..++.++..+.+.+.+... ......+....|++
T Consensus 147 -pP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E----------------Gv~id~eal~lLa~ 209 (824)
T PRK07764 147 -PPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE----------------GVPVEPGVLPLVIR 209 (824)
T ss_pred -CCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHH
Confidence 33455555555 4334433223345689999999999888887765322 11122345567788
Q ss_pred hcCCCcc
Q 036977 370 KLHSLKL 376 (693)
Q Consensus 370 ~c~glPL 376 (693)
.++|-+.
T Consensus 210 ~sgGdlR 216 (824)
T PRK07764 210 AGGGSVR 216 (824)
T ss_pred HcCCCHH
Confidence 8887664
No 82
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.07 E-value=5.2e-05 Score=88.50 Aligned_cols=160 Identities=13% Similarity=0.162 Sum_probs=92.7
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCC----CCEEEE-EEecCCCChHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKL----IDKVVM-AEVTQNPDPQKIQD 228 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~~~~ 228 (693)
+...+.++||+.++.++++.|......-+.++|.+|+||||+|+.+++....... .+..+| ++++.-...
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag----- 257 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAG----- 257 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcc-----
Confidence 3456789999999999999997766666779999999999999999998653311 223333 333321000
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCccC-------cc--ccCCCCCCcccccccccCCCeEE
Q 036977 229 KLASDLGMKFDLNDSIHHRASRLRERLK-QEKRVLIILDNIWTKLE-------LD--AVGIPSGDVDEKDREDDQRRCTI 298 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~-~~k~~LlVlDdv~~~~~-------~~--~l~~~~~~~~~~~~~~~~~~~~I 298 (693)
.. .....+.....+...+. .+.+.+|++|+++.... -+ .+..|.. ....-++
T Consensus 258 -------~~--~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---------~~G~l~~ 319 (852)
T TIGR03345 258 -------AS--VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---------ARGELRT 319 (852)
T ss_pred -------cc--cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---------hCCCeEE
Confidence 00 00111122222222222 23679999999986521 11 0111211 1122455
Q ss_pred EEecCChhhh------hhhcCCCcEEEcCCCCHHHHHHHHHHhh
Q 036977 299 ILTSRSRDLL------CIDMNSQKIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 299 ivTtR~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
|-+|...... .........+.+++++.+++.+++....
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 6666543221 0112234689999999999999986554
No 83
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=7.6e-05 Score=81.52 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=106.4
Q ss_pred CCCccccchHHHHHHHHHHHhcCCce-EEEEEecCCCcHHHHHHHHHHHhhccCC------------------CC-EEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKKVMEDKL------------------ID-KVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------F~-~~~w 214 (693)
.....++|.+...+.+...+..++.. ...++|+.|+||||+|+.+.+..-.... +. .++.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 45667899999999999999877654 5689999999999999998887532110 11 1233
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 292 (693)
++.+......++ ++++....... ..+++-++|+|+++... ..+.+...+.. .
T Consensus 91 ldaas~~gId~I-Relie~~~~~P-----------------~~~~~KVvIIDEad~Lt~~A~NALLK~LEE--------p 144 (535)
T PRK08451 91 MDAASNRGIDDI-RELIEQTKYKP-----------------SMARFKIFIIDEVHMLTKEAFNALLKTLEE--------P 144 (535)
T ss_pred eccccccCHHHH-HHHHHHHhhCc-----------------ccCCeEEEEEECcccCCHHHHHHHHHHHhh--------c
Confidence 332222222222 22222211000 01255699999997653 23333222211 2
Q ss_pred CCCeEEEEecCChh-hhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIILTSRSRD-LLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~IivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
...+++|++|.+.. +..........+++.+++.++....+.+.+... ...-..+.+..|++.+
T Consensus 145 p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~E----------------Gi~i~~~Al~~Ia~~s 208 (535)
T PRK08451 145 PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKE----------------GVSYEPEALEILARSG 208 (535)
T ss_pred CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHc
Confidence 34566666665542 222122234689999999999988888776532 1122246677888888
Q ss_pred CCCcc
Q 036977 372 HSLKL 376 (693)
Q Consensus 372 ~glPL 376 (693)
+|-+-
T Consensus 209 ~GdlR 213 (535)
T PRK08451 209 NGSLR 213 (535)
T ss_pred CCcHH
Confidence 88664
No 84
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.06 E-value=6.5e-06 Score=94.11 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=105.6
Q ss_pred cccccccccccCccccccccCCCccc----ccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC
Q 036977 513 QKCYEEMIGFRDIKDLQLSHFPRLQE----IWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD 588 (693)
Q Consensus 513 ~~l~~l~~~~~~l~~l~~~~~~~L~~----~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~ 588 (693)
.+++.|++.+|.++.+|....++|+. ......+|...+++|+.|.+.++ ++. .+|..+. ++|++|++++|
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N-~L~--~LP~~l~--~sL~~L~Ls~N- 293 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHN-KIS--CLPENLP--EELRYLSVYDN- 293 (754)
T ss_pred cCCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCC-ccC--ccccccC--CCCcEEECCCC-
Confidence 46778888888887777655444442 12233566665667888888643 444 2344443 57888888877
Q ss_pred CCcccc-----ccceeccCCCCccccc-CCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccccccccccc-cccc
Q 036977 589 SLEEVL-----HLEELNAKEEHIGPLF-PRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISN-STSV 661 (693)
Q Consensus 589 ~l~~l~-----~L~~L~l~~~~l~~~~-~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~-~~~l 661 (693)
.++.+| +|++|++++|.+..+. ...++|+.|++.+| .+..+|..+ .++|+.|++++| ++..+|.. +.+|
T Consensus 294 ~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~~lp~~L 369 (754)
T PRK15370 294 SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKN-QITVLPETLPPTI 369 (754)
T ss_pred ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC-ccccCChhh--cCcccEEECCCC-CCCcCChhhcCCc
Confidence 454433 4788888887776552 22368999999985 588888766 379999999999 58888864 4679
Q ss_pred ceeeccccccccccc
Q 036977 662 LHMTADNKEAQKLKS 676 (693)
Q Consensus 662 ~~l~~~~~~~~~~~~ 676 (693)
+.|.+.+|.-....+
T Consensus 370 ~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 370 TTLDVSRNALTNLPE 384 (754)
T ss_pred CEEECCCCcCCCCCH
Confidence 999998887554443
No 85
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.05 E-value=2.4e-05 Score=78.15 Aligned_cols=150 Identities=11% Similarity=0.187 Sum_probs=93.7
Q ss_pred CCccccchHHHHH---HHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHH
Q 036977 156 DNEAFDSRMKVFQ---DVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLAS 232 (693)
Q Consensus 156 ~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 232 (693)
...++||.+..+. .|.+.+..+..+.+.+||++|+||||||+.+....+... ..||.+|-...-..-.++|++
T Consensus 136 tL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred hHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHH
Confidence 3445556555443 244445567889999999999999999999998876542 667877765544444455544
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cCccccCCCCCCcccccccccCCCeEEEE--ecCChhhh
Q 036977 233 DLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK--LELDAVGIPSGDVDEKDREDDQRRCTIIL--TSRSRDLL 308 (693)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~Iiv--TtR~~~v~ 308 (693)
+-.. ...+. ++|.+|.+|+|..- .+-+.+... ..+|.-++| ||-+...-
T Consensus 212 ~aq~---------------~~~l~-krkTilFiDEiHRFNksQQD~fLP~-----------VE~G~I~lIGATTENPSFq 264 (554)
T KOG2028|consen 212 QAQN---------------EKSLT-KRKTILFIDEIHRFNKSQQDTFLPH-----------VENGDITLIGATTENPSFQ 264 (554)
T ss_pred HHHH---------------HHhhh-cceeEEEeHHhhhhhhhhhhcccce-----------eccCceEEEecccCCCccc
Confidence 3210 11122 37899999999754 344444222 345654444 56555421
Q ss_pred --hhhcCCCcEEEcCCCCHHHHHHHHHHhh
Q 036977 309 --CIDMNSQKIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 309 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
......-.++.|++|..++-..++.+-.
T Consensus 265 ln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 265 LNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 1122334589999999999988887744
No 86
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=8.4e-06 Score=85.05 Aligned_cols=112 Identities=16% Similarity=0.325 Sum_probs=72.8
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCcccc-ccceeccCCCCcccccCCC-CCcCEeecCCCcCc
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLEEVL-HLEELNAKEEHIGPLFPRL-SWLRLIDLPKLKRF 627 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~~l~-~L~~L~l~~~~l~~~~~~L-~~L~~L~L~~c~~l 627 (693)
.++|+.|.+.+|.++.. +|..+ .++|++|++++|..+..+| +|+.|++..+....+ +.| ++|+.|.+.++...
T Consensus 71 P~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n~~~~L-~~LPssLk~L~I~~~n~~ 145 (426)
T PRK15386 71 PNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEISGLPESVRSLEIKGSATDSI-KNVPNGLTSLSINSYNPE 145 (426)
T ss_pred CCCCcEEEccCCCCccc--CCchh--hhhhhheEccCcccccccccccceEEeCCCCCccc-ccCcchHhheeccccccc
Confidence 35799999999998863 45555 3689999999998887775 588888776443332 222 35666666543211
Q ss_pred --ccccccccCCCCcCEEecccccccccccc-cccccceeecccc
Q 036977 628 --YNFTGNIIELPELRYLTIENCPDMETFIS-NSTSVLHMTADNK 669 (693)
Q Consensus 628 --~~LP~~i~~L~~L~~L~i~~C~~L~~lp~-~~~~l~~l~~~~~ 669 (693)
..+|. .--++|++|+|.+|..+ .+|. .|.+|+.|.++.+
T Consensus 146 ~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 146 NQARIDN--LISPSLKTLSLTGCSNI-ILPEKLPESLQSITLHIE 187 (426)
T ss_pred ccccccc--ccCCcccEEEecCCCcc-cCcccccccCcEEEeccc
Confidence 11111 01267899999999865 4554 5678888887554
No 87
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.02 E-value=7e-05 Score=79.97 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=90.8
Q ss_pred CccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 157 NEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
...+.|+++.++++.+.+.. ..++-|.++|++|+|||++|+++++..... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh----
Confidence 35678999999998887631 245678999999999999999999876532 222211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcc--ccCCCCCC----ccccccc----ccC
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELD--AVGIPSGD----VDEKDRE----DDQ 293 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~--~l~~~~~~----~~~~~~~----~~~ 293 (693)
..+... .. .........+.+......+.+|++||++....-. .....-+. +.+++.. ...
T Consensus 199 ~~l~~~---~~-------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SELVQK---FI-------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHHhHh---hc-------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 111111 01 1112223333333333367899999998642100 00000000 0000100 022
Q ss_pred CCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 294 RRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 294 ~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.+..||.||.......... .....+.+...+.++..++|..+..
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 3567888887655432222 1245799999999999999987765
No 88
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=9e-05 Score=80.41 Aligned_cols=178 Identities=11% Similarity=0.110 Sum_probs=102.8
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccC---------------------CCCEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDK---------------------LIDKV 212 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~ 212 (693)
.....++|.+..++.+..++..++. ..+.++|+.|+||||+|+.+++...... +++ .
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 4566789999999999999987665 5678999999999999999988754321 111 1
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccc
Q 036977 213 VMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDRE 290 (693)
Q Consensus 213 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 290 (693)
+++.........+ .+.+.+.+. ..-..+++-++|+|+++... ..+.+...+.+
T Consensus 93 ~~i~g~~~~gid~-ir~i~~~l~-----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe------- 147 (451)
T PRK06305 93 LEIDGASHRGIED-IRQINETVL-----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE------- 147 (451)
T ss_pred EEeeccccCCHHH-HHHHHHHHH-----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-------
Confidence 2222111111111 112222111 00011256789999987552 22222222211
Q ss_pred ccCCCeEEEEecC-ChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhh
Q 036977 291 DDQRRCTIILTSR-SRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFP 369 (693)
Q Consensus 291 ~~~~~~~IivTtR-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 369 (693)
...++.+|++|. ...+..........+++.+++.++....+...+... ...-..+.+..|++
T Consensus 148 -p~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~e----------------g~~i~~~al~~L~~ 210 (451)
T PRK06305 148 -PPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQE----------------GIETSREALLPIAR 210 (451)
T ss_pred -CCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHH
Confidence 223555655553 333322222334589999999999888887766432 11223456777888
Q ss_pred hcCCCc
Q 036977 370 KLHSLK 375 (693)
Q Consensus 370 ~c~glP 375 (693)
.++|-+
T Consensus 211 ~s~gdl 216 (451)
T PRK06305 211 AAQGSL 216 (451)
T ss_pred HcCCCH
Confidence 888744
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.00 E-value=4.1e-05 Score=79.92 Aligned_cols=149 Identities=14% Similarity=0.130 Sum_probs=88.4
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLAS 232 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 232 (693)
|.....++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.... ....++.+. .... ..+..+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~-~i~~~l~ 89 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRID-FVRNRLT 89 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHH-HHHHHHH
Confidence 45567789999999999999976654 56677999999999999999987532 233444444 2221 1111111
Q ss_pred HhCCCCCCCCCHHHHHHHHHHH--HhcCCcEEEEEeCCCCcc--C-ccccCCCCCCcccccccccCCCeEEEEecCChhh
Q 036977 233 DLGMKFDLNDSIHHRASRLRER--LKQEKRVLIILDNIWTKL--E-LDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~--L~~~k~~LlVlDdv~~~~--~-~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v 307 (693)
.. ... +.. .+-++|+||++... . ...+...+.. ...++++|+||.....
T Consensus 90 ~~-----------------~~~~~~~~-~~~vliiDe~d~l~~~~~~~~L~~~le~--------~~~~~~~Ilt~n~~~~ 143 (316)
T PHA02544 90 RF-----------------ASTVSLTG-GGKVIIIDEFDRLGLADAQRHLRSFMEA--------YSKNCSFIITANNKNG 143 (316)
T ss_pred HH-----------------HHhhcccC-CCeEEEEECcccccCHHHHHHHHHHHHh--------cCCCceEEEEcCChhh
Confidence 11 000 012 45689999997551 1 1112111111 3456788888876542
Q ss_pred h-hhhcCCCcEEEcCCCCHHHHHHHHHHh
Q 036977 308 L-CIDMNSQKIFWIDALSKEEALHLAKLQ 335 (693)
Q Consensus 308 ~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 335 (693)
. .........+.+...+.++..+++...
T Consensus 144 l~~~l~sR~~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 144 IIEPLRSRCRVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred chHHHHhhceEEEeCCCCHHHHHHHHHHH
Confidence 2 111223346777788888887776654
No 90
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.99 E-value=2.1e-06 Score=87.91 Aligned_cols=211 Identities=22% Similarity=0.256 Sum_probs=144.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCC-EEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLID-KVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
.+.+.++|.|||||||++-.+.. .... |. .+.++.+..-.+...+.-.+...++..... -+.....+......
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~~ 87 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIGD 87 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHhh
Confidence 47899999999999999999998 4443 65 577888877777777777777777766543 23345566667776
Q ss_pred CCcEEEEEeCCCCcc-CccccCCCCCCcccccccccCCCeEEEEecCChhhhhhhcCCCcEEEcCCCCHH-HHHHHHHHh
Q 036977 258 EKRVLIILDNIWTKL-ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLCIDMNSQKIFWIDALSKE-EALHLAKLQ 335 (693)
Q Consensus 258 ~k~~LlVlDdv~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~ 335 (693)
++.++|+||..... +-..+...+.. ....-.|+.|+|.... ......+.+..|+.. ++.++|...
T Consensus 88 -rr~llvldncehl~~~~a~~i~all~--------~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~r 154 (414)
T COG3903 88 -RRALLVLDNCEHLLDACAALIVALLG--------ACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCR 154 (414)
T ss_pred -hhHHHHhcCcHHHHHHHHHHHHHHHc--------cchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHH
Confidence 88999999976552 11111111111 4445568899988754 345567788888754 799999877
Q ss_pred hhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc-----------------------c--ccccccc--ccc
Q 036977 336 HLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE-----------------------W--LPELTSF--ANT 388 (693)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa-----------------------w--l~~~~~~--~~~ 388 (693)
+.... ..+.-..........|++...|.|++ | +..-... ...
T Consensus 155 a~~~~-----------~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~ 223 (414)
T COG3903 155 AVLVA-----------LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQ 223 (414)
T ss_pred HHHhc-----------cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHH
Confidence 75220 11223344567888999999999999 1 1111110 114
Q ss_pred cccccchhccccCchhHhhhhhhhcccccCCC
Q 036977 389 GQIHSDLVVEFPSLLNLEIHGCNNMLRFISTS 420 (693)
Q Consensus 389 ~~i~~~l~~sy~~L~~~~lk~cfl~~~~fp~~ 420 (693)
....+.+.+||.-|+. ..+..|.-++.|...
T Consensus 224 qtl~asl~ws~~lLtg-we~~~~~rLa~~~g~ 254 (414)
T COG3903 224 QTLRASLDWSYALLTG-WERALFGRLAVFVGG 254 (414)
T ss_pred HhccchhhhhhHhhhh-HHHHHhcchhhhhhh
Confidence 5678899999999986 668888888888877
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.0001 Score=82.73 Aligned_cols=180 Identities=13% Similarity=0.136 Sum_probs=102.2
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCC---CC-------------EEEEEEe
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKL---ID-------------KVVMAEV 217 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~-------------~~~wv~v 217 (693)
.....++|.+..++.+..++..+++ ..+.++|+.|+||||+|+.+++..-.... +. .++++..
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieida 94 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDA 94 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEec
Confidence 4556788999999999999987664 55689999999999999999877532210 00 0111211
Q ss_pred cCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCC
Q 036977 218 TQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRR 295 (693)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~ 295 (693)
.......+ .+++.+.+ ...-..+++-++|+|+++... .++.+...+.. ....
T Consensus 95 asn~~vd~-IReLie~~-----------------~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE--------PP~~ 148 (725)
T PRK07133 95 ASNNGVDE-IRELIENV-----------------KNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE--------PPKH 148 (725)
T ss_pred cccCCHHH-HHHHHHHH-----------------HhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc--------CCCc
Confidence 11111111 12222221 111111356799999997552 33333222211 2234
Q ss_pred eE-EEEecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCC
Q 036977 296 CT-IILTSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSL 374 (693)
Q Consensus 296 ~~-IivTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl 374 (693)
+. |++|++...+..........+.+.+++.++....+...+... ......+.+..|++.++|-
T Consensus 149 tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~ke----------------gI~id~eAl~~LA~lS~Gs 212 (725)
T PRK07133 149 VIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKE----------------NISYEKNALKLIAKLSSGS 212 (725)
T ss_pred eEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCCC
Confidence 44 445554444433223334689999999999988888765432 1111234566777777775
Q ss_pred cc
Q 036977 375 KL 376 (693)
Q Consensus 375 PL 376 (693)
+-
T Consensus 213 lR 214 (725)
T PRK07133 213 LR 214 (725)
T ss_pred HH
Confidence 43
No 92
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.99 E-value=5.8e-05 Score=73.39 Aligned_cols=179 Identities=18% Similarity=0.139 Sum_probs=105.1
Q ss_pred CCCCccccchHHHHHHHHHHHh-----cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQD 228 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 228 (693)
|.....|+|.++.++++--.+. ++....+.++|++|.||||||.-++++..+. + .+.+.+.+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~------k~tsGp~l----- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L------KITSGPAL----- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e------Eecccccc-----
Confidence 4567789999999998877764 3467899999999999999999999998875 1 11111110
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC-cccc-CCCCCCcc--cccc---------cccCCC
Q 036977 229 KLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE-LDAV-GIPSGDVD--EKDR---------EDDQRR 295 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~-~~~l-~~~~~~~~--~~~~---------~~~~~~ 295 (693)
....+++..+.. |. ..=++.+|+++.... .+++ -.+..++. -.|+ ..-.+=
T Consensus 89 -------------eK~gDlaaiLt~-Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 89 -------------EKPGDLAAILTN-LE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred -------------cChhhHHHHHhc-CC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 111122222221 22 234566677664421 1111 01111110 0111 001223
Q ss_pred eEEEEecCChhhhhh-hcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCC
Q 036977 296 CTIILTSRSRDLLCI-DMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSL 374 (693)
Q Consensus 296 ~~IivTtR~~~v~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl 374 (693)
+-|=.|||.-.+... ......+.+++-.+.+|-.++..+.+..- .-.-..+.+.+|++...|-
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l----------------~i~i~~~~a~eIA~rSRGT 216 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL----------------GIEIDEEAALEIARRSRGT 216 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh----------------CCCCChHHHHHHHHhccCC
Confidence 445578887655311 11234578888899999999988887532 2333457789999999999
Q ss_pred ccc
Q 036977 375 KLE 377 (693)
Q Consensus 375 PLa 377 (693)
|--
T Consensus 217 PRI 219 (332)
T COG2255 217 PRI 219 (332)
T ss_pred cHH
Confidence 964
No 93
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.95 E-value=3.7e-05 Score=75.58 Aligned_cols=187 Identities=16% Similarity=0.085 Sum_probs=116.9
Q ss_pred CCCCCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCE-EEEEEecCCCChHHHHHHH
Q 036977 152 NDGKDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDK-VVMAEVTQNPDPQKIQDKL 230 (693)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i 230 (693)
.-|+..+.+.|.+..+..+.+.+.....+....+|++|.|||+-|..++...-..+.|.. +.-.++|......-+-..+
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 345667889999999999999998877899999999999999999999988766555654 3445666554433111111
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHh-cCCc-EEEEEeCCCCc--cCccccCCCCCCcccccccccCCCeEEEEecCChh
Q 036977 231 ASDLGMKFDLNDSIHHRASRLRERLK-QEKR-VLIILDNIWTK--LELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD 306 (693)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~-~~k~-~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~ 306 (693)
.+...+......... .-++ -.+|||++++. +.|..+.....+ ....++.|+.+.+-.
T Consensus 110 -----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~--------~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 110 -----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED--------FSRTTRFILICNYLS 170 (346)
T ss_pred -----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc--------cccceEEEEEcCChh
Confidence 111111100000000 0123 48899999976 567777554443 445566555554443
Q ss_pred hh-hhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCC
Q 036977 307 LL-CIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHS 373 (693)
Q Consensus 307 v~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~g 373 (693)
.. ......-.-+.-++|..++..+-+..++... ..+-..+..+.|++.++|
T Consensus 171 rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E----------------~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 171 RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKE----------------GVDIDDDALKLIAKISDG 222 (346)
T ss_pred hCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHHcCC
Confidence 32 2111222367888999999988888887643 223334567778888777
No 94
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.0002 Score=78.22 Aligned_cols=180 Identities=14% Similarity=0.044 Sum_probs=102.9
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhcc-------------------CCCCEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMED-------------------KLIDKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w 214 (693)
.....++|.+.....+..++..++. ....++|+.|+||||+|+.++...... +.|...++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 4456788999999999999987655 456789999999999999998875321 01112333
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 292 (693)
++.+......+ .+.+.+.+... -..+++-++|+|+++... ..+.+...+.. .
T Consensus 93 idaas~~gvd~-ir~I~~~~~~~-----------------P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe--------p 146 (486)
T PRK14953 93 IDAASNRGIDD-IRALRDAVSYT-----------------PIKGKYKVYIIDEAHMLTKEAFNALLKTLEE--------P 146 (486)
T ss_pred EeCccCCCHHH-HHHHHHHHHhC-----------------cccCCeeEEEEEChhhcCHHHHHHHHHHHhc--------C
Confidence 33322222221 11222221110 011356799999998552 23333222221 2
Q ss_pred CCCeEEEEec-CChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIILTS-RSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~IivTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
...+.+|++| +...+..........+.+.+++.++....+.+.+... ......+....|++.+
T Consensus 147 p~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~e----------------gi~id~~al~~La~~s 210 (486)
T PRK14953 147 PPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEE----------------KIEYEEKALDLLAQAS 210 (486)
T ss_pred CCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHc
Confidence 2344454444 4333322222334588999999999988888776532 1122235566777777
Q ss_pred CCCcc
Q 036977 372 HSLKL 376 (693)
Q Consensus 372 ~glPL 376 (693)
+|-+-
T Consensus 211 ~G~lr 215 (486)
T PRK14953 211 EGGMR 215 (486)
T ss_pred CCCHH
Confidence 77554
No 95
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.93 E-value=2.4e-05 Score=89.17 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=38.0
Q ss_pred CCCEEEecCCCCCcccc----ccceeccCCCCcccccCCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccccccc
Q 036977 578 NLRYLEVRNCDSLEEVL----HLEELNAKEEHIGPLFPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMET 653 (693)
Q Consensus 578 ~L~~L~l~~c~~l~~l~----~L~~L~l~~~~l~~~~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~ 653 (693)
+|++|+++++ .++.+| +|+.|++++|.+..+.....+|+.|+|++ +.+..+|... ++|+.|+++++ +|.+
T Consensus 343 ~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~-N~Lt~LP~l~---s~L~~LdLS~N-~Lss 416 (788)
T PRK15387 343 GLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSG-NRLTSLPVLP---SELKELMVSGN-RLTS 416 (788)
T ss_pred ccceEecCCC-ccCCCCCCCcccceehhhccccccCcccccccceEEecC-CcccCCCCcc---cCCCEEEccCC-cCCC
Confidence 5566666554 233222 34455555544443322233455555554 3455555322 34555555554 3445
Q ss_pred ccccccccceeec
Q 036977 654 FISNSTSVLHMTA 666 (693)
Q Consensus 654 lp~~~~~l~~l~~ 666 (693)
+|..+.+|+.|.+
T Consensus 417 IP~l~~~L~~L~L 429 (788)
T PRK15387 417 LPMLPSGLLSLSV 429 (788)
T ss_pred CCcchhhhhhhhh
Confidence 5544444444333
No 96
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00018 Score=81.05 Aligned_cols=192 Identities=13% Similarity=0.087 Sum_probs=105.9
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASD 233 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 233 (693)
.....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.......... ....+.-...+.+...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRAIAEG 86 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHHHhcC
Confidence 4566789999999999998876655 45689999999999999999987643211000 0001111122222211
Q ss_pred hCCCC---C--CCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEec
Q 036977 234 LGMKF---D--LNDSIHHRASRLRERLK----QEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTS 302 (693)
Q Consensus 234 l~~~~---~--~~~~~~~~~~~l~~~L~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTt 302 (693)
.+... + .....++. ..+.+.+. ..++-++|+|+++... ..+.+...+.+ ....+.+|++|
T Consensus 87 ~~~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe--------pp~~tv~Il~t 157 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE--------PPPHAIFILAT 157 (585)
T ss_pred CCCeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc--------CCCCeEEEEEe
Confidence 11100 0 00111111 11222211 1256799999997552 23333222221 23355566555
Q ss_pred CC-hhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 303 RS-RDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 303 R~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
.+ ..+..........+.+..++..+....+...+... ...-..+....|++.++|-+..
T Consensus 158 ~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~e----------------gl~i~~eal~~La~~s~Gdlr~ 217 (585)
T PRK14950 158 TEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAE----------------GINLEPGALEAIARAATGSMRD 217 (585)
T ss_pred CChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCCCHHH
Confidence 43 33322222334578899999998888888776532 1112245677888888886654
No 97
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00021 Score=79.32 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=105.7
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccC--------------------CCCEE
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDK--------------------LIDKV 212 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~ 212 (693)
|.....++|.+..++.+..++..++. ..+.++|+.|+||||+|+.+++..-... +++ +
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v 90 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-V 90 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-e
Confidence 34566789999999999999987655 4688999999999999999998864321 122 1
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccc
Q 036977 213 VMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDRE 290 (693)
Q Consensus 213 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 290 (693)
++++......+.++ +++.+.+ ...-..+++-++|+|+++... .++.+...+..
T Consensus 91 ~~idgas~~~vddI-r~l~e~~-----------------~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe------- 145 (563)
T PRK06647 91 IEIDGASNTSVQDV-RQIKEEI-----------------MFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE------- 145 (563)
T ss_pred EEecCcccCCHHHH-HHHHHHH-----------------HhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-------
Confidence 22221111112111 1111111 111111356789999998663 34444333322
Q ss_pred ccCCCeEEEEecCC-hhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhh
Q 036977 291 DDQRRCTIILTSRS-RDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFP 369 (693)
Q Consensus 291 ~~~~~~~IivTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 369 (693)
....+.+|++|.+ ..+..........++..+++.++..+.+.+.+... ...-..+.+..|++
T Consensus 146 -pp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~e----------------gi~id~eAl~lLa~ 208 (563)
T PRK06647 146 -PPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLED----------------QIKYEDEALKWIAY 208 (563)
T ss_pred -CCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHH
Confidence 3345556555543 33322222334578999999999888887776432 12223456677888
Q ss_pred hcCCCcc
Q 036977 370 KLHSLKL 376 (693)
Q Consensus 370 ~c~glPL 376 (693)
.++|-+-
T Consensus 209 ~s~GdlR 215 (563)
T PRK06647 209 KSTGSVR 215 (563)
T ss_pred HcCCCHH
Confidence 8888654
No 98
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.92 E-value=7.5e-05 Score=86.52 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=92.1
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCC----CCEEEE-EEecCCCChHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKL----IDKVVM-AEVTQNPDPQKIQDK 229 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~~~~~ 229 (693)
...+.++||++++.++++.|......-+.++|++|+|||++|+.+++....... .+..+| ++++ .+.
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~------~l~-- 250 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG------SLL-- 250 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH------HHh--
Confidence 345678999999999999987666666789999999999999999998744311 133343 2211 111
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCc----------cccCCCCCCcccccccccCCC-eEE
Q 036977 230 LASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLEL----------DAVGIPSGDVDEKDREDDQRR-CTI 298 (693)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~----------~~l~~~~~~~~~~~~~~~~~~-~~I 298 (693)
.. ... ....+.....+.+.+...++.+|++|+++....- ..+..|. ...| -++
T Consensus 251 --a~--~~~--~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~----------l~~g~i~~ 314 (731)
T TIGR02639 251 --AG--TKY--RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPA----------LSSGKLRC 314 (731)
T ss_pred --hh--ccc--cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHH----------HhCCCeEE
Confidence 00 000 0122333334444443335799999998854210 1111111 1122 344
Q ss_pred EEecCChhhh------hhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 299 ILTSRSRDLL------CIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 299 ivTtR~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
|-+|...... .........+.+++++.++..+++.....
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 4444432210 01112345899999999999999987654
No 99
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.92 E-value=0.00013 Score=72.78 Aligned_cols=106 Identities=15% Similarity=0.250 Sum_probs=81.1
Q ss_pred HHHHHHHHHhc---CCceEEEEEecCCCcHHHHHHHHHHHhhccCCC----CEEEEEEecCCCChHHHHHHHHHHhCCCC
Q 036977 166 VFQDVMEALKD---DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLI----DKVVMAEVTQNPDPQKIQDKLASDLGMKF 238 (693)
Q Consensus 166 ~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 238 (693)
.++.+.+.+.. .+.+-+.|||.+|.|||++++.+....-....- -.++.|.....++...+...|+.+++.+.
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 33444444432 356789999999999999999999876543111 14778888999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 239 DLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 239 ~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
....+.........+.++.-+--+||+|++++.
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 766666666666677777656689999999875
No 100
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.92 E-value=2.5e-06 Score=86.16 Aligned_cols=134 Identities=15% Similarity=0.109 Sum_probs=92.8
Q ss_pred cccccccccCccccccccCCCcc-------cccCCCCCCccc---ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEe
Q 036977 515 CYEEMIGFRDIKDLQLSHFPRLQ-------EIWHGQALPVSF---FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEV 584 (693)
Q Consensus 515 l~~l~~~~~~l~~l~~~~~~~L~-------~~~~~~~~~~~~---~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l 584 (693)
+...++..+.+.++|... +.++ .......+++.+ +++|..|.+.+-. .-.+|..++.+..||.|+|
T Consensus 390 Vt~VnfskNqL~elPk~L-~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~---Ln~LP~e~~~lv~Lq~Lnl 465 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRL-VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL---LNDLPEEMGSLVRLQTLNL 465 (565)
T ss_pred eEEEecccchHhhhhhhh-HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch---hhhcchhhhhhhhhheecc
Confidence 445566777777777554 1111 111112333333 4566666666532 2256888999999999999
Q ss_pred cCCCCCcccc-------ccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccccccc
Q 036977 585 RNCDSLEEVL-------HLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMET 653 (693)
Q Consensus 585 ~~c~~l~~l~-------~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~ 653 (693)
+.. +++.+| .|+.+-.+++++.++ +.+|.+|.+|+|.+ +.+..+|+.++++++|++|.+.|.|- .
T Consensus 466 S~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf--r 541 (565)
T KOG0472|consen 466 SFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF--R 541 (565)
T ss_pred ccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc--C
Confidence 776 555444 355566676777666 88899999999998 88999999999999999999999872 3
Q ss_pred ccc
Q 036977 654 FIS 656 (693)
Q Consensus 654 lp~ 656 (693)
.|.
T Consensus 542 ~Pr 544 (565)
T KOG0472|consen 542 QPR 544 (565)
T ss_pred CCH
Confidence 565
No 101
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.88 E-value=0.00011 Score=72.49 Aligned_cols=163 Identities=7% Similarity=0.034 Sum_probs=87.3
Q ss_pred chHH-HHHHHHHHHhc-CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCC
Q 036977 162 SRMK-VFQDVMEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFD 239 (693)
Q Consensus 162 gR~~-~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 239 (693)
|+.. .+..+.++... ...+.+.|+|..|+|||+||+.+++..... -....+++...... .+
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~~~~~~~------~~--------- 85 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG--GRNARYLDAASPLL------AF--------- 85 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEehHHhHH------HH---------
Confidence 4433 33444444332 345688999999999999999999986433 12345555433210 00
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCe-EEEEecCChhhhh-------hh
Q 036977 240 LNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRC-TIILTSRSRDLLC-------ID 311 (693)
Q Consensus 240 ~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~IivTtR~~~v~~-------~~ 311 (693)
... . ..-++|+||++....+..- . +...+......+. .||+|++...... ..
T Consensus 86 -------------~~~-~-~~~~liiDdi~~l~~~~~~--~---L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr 145 (227)
T PRK08903 86 -------------DFD-P-EAELYAVDDVERLDDAQQI--A---LFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR 145 (227)
T ss_pred -------------hhc-c-cCCEEEEeChhhcCchHHH--H---HHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH
Confidence 011 1 2357899999755322110 0 1111111122333 4677766543211 01
Q ss_pred cCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 312 MNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 312 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
+.....+.+.+++.++-..++.+.+... ...--.+....+++.+.|.+..
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~~----------------~v~l~~~al~~L~~~~~gn~~~ 195 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAER----------------GLQLADEVPDYLLTHFRRDMPS 195 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHhccCCHHH
Confidence 2234689999999987777766544321 1122245666667666666653
No 102
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00012 Score=79.43 Aligned_cols=162 Identities=14% Similarity=0.079 Sum_probs=99.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEK 259 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (693)
.-+.|+|..|+|||.|++++++.......-..+++++. .++...+...++... .....+.+.++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~~-- 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEICQ-- 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhcc--
Confidence 56889999999999999999997654322234556543 456666666654211 123344455543
Q ss_pred cEEEEEeCCCCcc---CccccCCCCCCcccccccccCCCeEEEEecCChhhh--------hhhcCCCcEEEcCCCCHHHH
Q 036977 260 RVLIILDNIWTKL---ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL--------CIDMNSQKIFWIDALSKEEA 328 (693)
Q Consensus 260 ~~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea 328 (693)
.-+||+||+.... .+... ++.++......|..||+|+...... ...+...-++.+++++.++.
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~------lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEI------FFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred CCEEEEeccccccCCHHHHHH------HHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 4589999997553 11111 1122222234555788887654311 12244566889999999999
Q ss_pred HHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 329 LHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 329 ~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
.+++.+.+... +. ...-..++...|++.+.|-|-
T Consensus 281 ~~iL~~~~~~~-------------gl-~~~l~~evl~~Ia~~~~gd~R 314 (450)
T PRK14087 281 TAIIKKEIKNQ-------------NI-KQEVTEEAINFISNYYSDDVR 314 (450)
T ss_pred HHHHHHHHHhc-------------CC-CCCCCHHHHHHHHHccCCCHH
Confidence 99999988532 00 012335677888888888664
No 103
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.00012 Score=79.30 Aligned_cols=140 Identities=16% Similarity=0.223 Sum_probs=82.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQE 258 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (693)
..-+.|+|.+|+|||.|++++++.......-..++|++. .++...+...+... . ...+.+.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~----~~~f~~~~~~- 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----K----LNEFREKYRK- 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----c----HHHHHHHHHh-
Confidence 346999999999999999999998765421125677754 34556665555321 1 1223334432
Q ss_pred CcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCC-hhhh-------hhhcCCCcEEEcCCCCHHHHHH
Q 036977 259 KRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRS-RDLL-------CIDMNSQKIFWIDALSKEEALH 330 (693)
Q Consensus 259 k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~-~~v~-------~~~~~~~~~~~l~~L~~~ea~~ 330 (693)
+.-+|++||++....-..... .++..+......|..||+||.. ..-. ...+.....+.+++.+.+.-..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~---elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQT---ELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred cCCEEEEechhhhcCcHHHHH---HHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 356899999985421100000 0111111123345568888853 2221 1123345688999999999999
Q ss_pred HHHHhhh
Q 036977 331 LAKLQHL 337 (693)
Q Consensus 331 Lf~~~~~ 337 (693)
++.+.+.
T Consensus 271 IL~~~~~ 277 (440)
T PRK14088 271 IARKMLE 277 (440)
T ss_pred HHHHHHH
Confidence 9988875
No 104
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.86 E-value=4.6e-05 Score=86.87 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=48.9
Q ss_pred CCCCEEEecCCCCCccc----cccceeccCCCCcccccCCCCCcCEeecCCCcCcccccccccCC---------------
Q 036977 577 NNLRYLEVRNCDSLEEV----LHLEELNAKEEHIGPLFPRLSWLRLIDLPKLKRFYNFTGNIIEL--------------- 637 (693)
Q Consensus 577 ~~L~~L~l~~c~~l~~l----~~L~~L~l~~~~l~~~~~~L~~L~~L~L~~c~~l~~LP~~i~~L--------------- 637 (693)
++|++|+++++ .+..+ .+|+.|++++|.+..+-....+|+.|+|++ +++..+|....++
T Consensus 302 ~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~ 379 (788)
T PRK15387 302 PGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD-NQLASLPTLPSELYKLWAYNNRLTSLPA 379 (788)
T ss_pred cccceeECCCC-ccccCCCCcccccccccccCccccccccccccceEecCC-CccCCCCCCCcccceehhhccccccCcc
Confidence 55666666665 23322 245566666655554322224677888877 5677776432111
Q ss_pred --CCcCEEecccccccccccccccccceeecccccc
Q 036977 638 --PELRYLTIENCPDMETFISNSTSVLHMTADNKEA 671 (693)
Q Consensus 638 --~~L~~L~i~~C~~L~~lp~~~~~l~~l~~~~~~~ 671 (693)
++|+.|+++++ +|..+|..+.+|..|.++++.-
T Consensus 380 l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~L 414 (788)
T PRK15387 380 LPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRL 414 (788)
T ss_pred cccccceEEecCC-cccCCCCcccCCCEEEccCCcC
Confidence 24445555544 5555555555555555555543
No 105
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00034 Score=78.67 Aligned_cols=192 Identities=13% Similarity=0.075 Sum_probs=103.5
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASD 233 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 233 (693)
.....++|.+.....|..++..++. ..+.++|+.|+||||+|+.+++........... ......-...+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~-----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT-----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC-----CCCCcccHHHHHHhcC
Confidence 4456788999999999999987654 677899999999999999999986542111000 0001111112222111
Q ss_pred hCCCC-----CCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEE-e
Q 036977 234 LGMKF-----DLNDSIHHRASRLRERLK----QEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIIL-T 301 (693)
Q Consensus 234 l~~~~-----~~~~~~~~~~~~l~~~L~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~Iiv-T 301 (693)
..... ......+.. ..+.+.+. .+++-++|+|+++... ..+.+...+.. ....+.+|+ |
T Consensus 88 ~h~D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe--------Pp~~tvfIL~t 158 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE--------PPPRVVFVLAT 158 (620)
T ss_pred CCccEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc--------CCcCeEEEEEe
Confidence 11100 000111111 11212221 1255689999998653 33333222221 223444444 4
Q ss_pred cCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 302 SRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 302 tR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
+....+..........+....++.++....+...+... ...-..+.+..|++.++|-+.
T Consensus 159 ~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~ke----------------gi~is~~al~~La~~s~G~lr 217 (620)
T PRK14948 159 TDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKE----------------SIEIEPEALTLVAQRSQGGLR 217 (620)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHHcCCCHH
Confidence 43333332222334578888999988888777766432 111123556778888888664
No 106
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00018 Score=80.69 Aligned_cols=179 Identities=12% Similarity=0.094 Sum_probs=101.5
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCCC-------------------CEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKLI-------------------DKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~~~~w 214 (693)
.....++|.+..++.+..++..++. ..+.++|+.|+||||+|+.+++........ ..++.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~e 92 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFE 92 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeee
Confidence 4567789999999999999987765 456899999999999999998885432111 01112
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 292 (693)
++......+.+ .+++...+... -...++-++|+|+++... ..+.+...+.. .
T Consensus 93 id~~s~~~v~~-ir~l~~~~~~~-----------------p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe--------p 146 (576)
T PRK14965 93 IDGASNTGVDD-IRELRENVKYL-----------------PSRSRYKIFIIDEVHMLSTNAFNALLKTLEE--------P 146 (576)
T ss_pred eeccCccCHHH-HHHHHHHHHhc-----------------cccCCceEEEEEChhhCCHHHHHHHHHHHHc--------C
Confidence 22222222222 12222221110 011245689999998653 23333222211 2
Q ss_pred CCCeEEE-EecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTII-LTSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~Ii-vTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
...+.+| +||....+..........+...+++.++....+...+... ...-..+....|++.+
T Consensus 147 p~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~e----------------gi~i~~~al~~la~~a 210 (576)
T PRK14965 147 PPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQE----------------GISISDAALALVARKG 210 (576)
T ss_pred CCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHHc
Confidence 2345555 4544444432223334578889999988888777765432 1122235566677777
Q ss_pred CCCc
Q 036977 372 HSLK 375 (693)
Q Consensus 372 ~glP 375 (693)
+|-.
T Consensus 211 ~G~l 214 (576)
T PRK14965 211 DGSM 214 (576)
T ss_pred CCCH
Confidence 7744
No 107
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.84 E-value=0.00015 Score=85.00 Aligned_cols=166 Identities=17% Similarity=0.236 Sum_probs=90.9
Q ss_pred CccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCC----CCEEEEEEecCCCChHHHHHHHHH
Q 036977 157 NEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKL----IDKVVMAEVTQNPDPQKIQDKLAS 232 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~ 232 (693)
...++||+++++++++.|......-+.++|++|+|||++|..++........ -+..+|. + +...++ .
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c
Confidence 4568999999999999997665566679999999999999999998653211 1234442 1 111111 0
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCC-CeEEEEecCChhhh---
Q 036977 233 DLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQR-RCTIILTSRSRDLL--- 308 (693)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~IivTtR~~~v~--- 308 (693)
|.+.. ...++....+.+.+...++.+|++|+++....-..-.... +....+...-.. .-++|.+|......
T Consensus 249 --g~~~~--ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~-~~a~lLkp~l~rg~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 249 --GTKYR--GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI-DAANILKPALARGELQCIGATTLDEYRKHI 323 (821)
T ss_pred --cCCCc--cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc-cHHHHhHHHHhCCCcEEEEeCCHHHHHHHH
Confidence 11111 1233333444444443367999999997442110000000 000001000111 23455555544321
Q ss_pred ---hhhcCCCcEEEcCCCCHHHHHHHHHHhh
Q 036977 309 ---CIDMNSQKIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 309 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
.........+.+...+.++...++....
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 1112234578899999999988887654
No 108
>PF14516 AAA_35: AAA-like domain
Probab=97.82 E-value=0.0011 Score=69.20 Aligned_cols=198 Identities=17% Similarity=0.134 Sum_probs=116.9
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-----CChHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-----PDPQKIQD 228 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~ 228 (693)
+.+.+.+++|...-+.+.+.+.+. ...+.|.|+-.+|||+|...+.+..+.. -..++++++... .+...+++
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~--~~~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ--GYRCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC--CCEEEEEEeecCCCcccCCHHHHHH
Confidence 345566778997777778777543 4689999999999999999999988765 234567777542 24555555
Q ss_pred HHH----HHhCCCCCC-------CCCHHHHHHHHHHHH-hc-CCcEEEEEeCCCCccCccccCCCCCCcccccccccCC-
Q 036977 229 KLA----SDLGMKFDL-------NDSIHHRASRLRERL-KQ-EKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQR- 294 (693)
Q Consensus 229 ~i~----~~l~~~~~~-------~~~~~~~~~~l~~~L-~~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~- 294 (693)
.++ ++++..... ..+.......+.+.+ .. .++.+|++|+++.......+ ..+++..+|.|...
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~---~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQI---ADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcch---HHHHHHHHHHHHHhc
Confidence 554 445443211 112223334444443 21 47899999999866332111 01123333333211
Q ss_pred ------C-e-EEEEecCChhhh----hhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhh
Q 036977 295 ------R-C-TIILTSRSRDLL----CIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKL 362 (693)
Q Consensus 295 ------~-~-~IivTtR~~~v~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (693)
. - -|++.+...... ....+....+.|++++.+|...|+.++-... ...
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--------------------~~~ 220 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--------------------SQE 220 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--------------------CHH
Confidence 1 1 122222111111 1112334589999999999999988764321 122
Q ss_pred HHHHHhhhcCCCccc
Q 036977 363 IELKVFPKLHSLKLE 377 (693)
Q Consensus 363 ~~~~I~~~c~glPLa 377 (693)
...+|...++|+|.-
T Consensus 221 ~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 221 QLEQLMDWTGGHPYL 235 (331)
T ss_pred HHHHHHHHHCCCHHH
Confidence 388899999999964
No 109
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.82 E-value=0.00023 Score=77.37 Aligned_cols=171 Identities=16% Similarity=0.169 Sum_probs=92.7
Q ss_pred CccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCC---CCEEEEEEecCC
Q 036977 157 NEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKL---IDKVVMAEVTQN 220 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~wv~vs~~ 220 (693)
...+.|.+..++++.+.+.- ..++-+.++|++|+|||++|+.+++....... .....|++++..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 45577899999988887631 13466899999999999999999998754311 123445544431
Q ss_pred CChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCC-------CCCcccccccc-c
Q 036977 221 PDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIP-------SGDVDEKDRED-D 292 (693)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~-------~~~~~~~~~~~-~ 292 (693)
. ++... .+. ............++....+++++|+||+++....-..-... +..+...+... .
T Consensus 261 e----Ll~ky---vGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 E----LLNKY---VGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred h----hcccc---cch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 1 10000 000 00001112222222223346899999999854210000000 00000000000 1
Q ss_pred CCCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 293 QRRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
..+..||.||.........+ ..+..+++...+.++..++|..+..
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 23455677776655432222 2245789999999999999998864
No 110
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.82 E-value=0.00013 Score=73.77 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=79.7
Q ss_pred ccccchHHHHHHHHHH---Hh------------cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 158 EAFDSRMKVFQDVMEA---LK------------DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~---L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
..++|.+..++.|.+. .. ......+.++|++|+||||+|+.+++.....+.-....++.++.
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~--- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER--- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH---
Confidence 3467877777666533 21 01345678999999999999999998754321111112233221
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC----------ccccCCCCCCccccccccc
Q 036977 223 PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE----------LDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~----------~~~l~~~~~~~~~~~~~~~ 292 (693)
.++... .++ ... ..+.+.+......+|++|+++.... .+.+.....+ .
T Consensus 83 -~~l~~~---~~g------~~~----~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~--------~ 140 (261)
T TIGR02881 83 -ADLVGE---YIG------HTA----QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED--------N 140 (261)
T ss_pred -HHhhhh---hcc------chH----HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhc--------c
Confidence 111111 000 111 1222233222345899999986421 1111111111 2
Q ss_pred CCCeEEEEecCChhhh------hhhcC-CCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 293 QRRCTIILTSRSRDLL------CIDMN-SQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~------~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.....+|+++...... ..... ....+.+++++.++..+++.+.+.
T Consensus 141 ~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 141 RNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 2334555555443220 00011 234789999999999999987775
No 111
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00043 Score=77.22 Aligned_cols=180 Identities=15% Similarity=0.106 Sum_probs=103.8
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccC--------------------CCCEE
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDK--------------------LIDKV 212 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~ 212 (693)
|.....++|.+..++.+.+++..++. ..+.++|+.|+||||+|+.+.+..-..+ +++ +
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v 90 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-V 90 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-e
Confidence 34567889999999999999986654 5567899999999999999988754321 111 2
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccc
Q 036977 213 VMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDRE 290 (693)
Q Consensus 213 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 290 (693)
+.++.+....+.+ .+++...+... -..+++-++|+|+++... .++.+...+..
T Consensus 91 ~eidaas~~~vd~-ir~i~~~v~~~-----------------p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe------- 145 (559)
T PRK05563 91 IEIDAASNNGVDE-IRDIRDKVKYA-----------------PSEAKYKVYIIDEVHMLSTGAFNALLKTLEE------- 145 (559)
T ss_pred EEeeccccCCHHH-HHHHHHHHhhC-----------------cccCCeEEEEEECcccCCHHHHHHHHHHhcC-------
Confidence 2222222111111 11221211110 012356789999998652 34433222221
Q ss_pred ccCCCeEEE-EecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhh
Q 036977 291 DDQRRCTII-LTSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFP 369 (693)
Q Consensus 291 ~~~~~~~Ii-vTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 369 (693)
....+.+| .||....+..........+...+++.++..+.+...+... ......+....|++
T Consensus 146 -pp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~e----------------gi~i~~~al~~ia~ 208 (559)
T PRK05563 146 -PPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKE----------------GIEYEDEALRLIAR 208 (559)
T ss_pred -CCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHH
Confidence 22344444 4544444432222334578899999999888888776532 11222355677788
Q ss_pred hcCCCcc
Q 036977 370 KLHSLKL 376 (693)
Q Consensus 370 ~c~glPL 376 (693)
.++|-+.
T Consensus 209 ~s~G~~R 215 (559)
T PRK05563 209 AAEGGMR 215 (559)
T ss_pred HcCCCHH
Confidence 8887654
No 112
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.80 E-value=0.00023 Score=83.40 Aligned_cols=160 Identities=16% Similarity=0.214 Sum_probs=90.3
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCC----CC-EEEEEEecCCCChHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKL----ID-KVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~-~~~wv~vs~~~~~~~~~~~ 229 (693)
...+.++||+.++.++++.|......-+.++|.+|+|||++|+.++........ .+ .+++++++.-..
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a------- 247 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA------- 247 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh-------
Confidence 345679999999999999997766667779999999999999999998643211 12 233333332110
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHH-hcCCcEEEEEeCCCCccC---------ccccCCCCCCcccccccccCCCeEEE
Q 036977 230 LASDLGMKFDLNDSIHHRASRLRERL-KQEKRVLIILDNIWTKLE---------LDAVGIPSGDVDEKDREDDQRRCTII 299 (693)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L-~~~k~~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~Ii 299 (693)
+.... ...+.....+.+.+ +.+.+.+|++|+++.... ...+..|... .+ .-++|
T Consensus 248 -----g~~~~--g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--------~g-~l~~I 311 (857)
T PRK10865 248 -----GAKYR--GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--------RG-ELHCV 311 (857)
T ss_pred -----ccchh--hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--------cC-CCeEE
Confidence 00000 11222222232222 223679999999986531 1111112211 22 23455
Q ss_pred EecCChhhh------hhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 300 LTSRSRDLL------CIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 300 vTtR~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
-+|.....- .........+.+...+.++...++.....
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhh
Confidence 454444320 00112233667777799999998876553
No 113
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.76 E-value=0.0002 Score=77.34 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=91.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQE 258 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (693)
...+.|+|..|+|||.|++++++....+..-..++|++. .++...+...+... ....+.+.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN---------KMEEFKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC---------CHHHHHHHHHh-
Confidence 356889999999999999999998765421234666643 33444555554321 12234444443
Q ss_pred CcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhh--------hhhcCCCcEEEcCCCCHHHHHH
Q 036977 259 KRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL--------CIDMNSQKIFWIDALSKEEALH 330 (693)
Q Consensus 259 k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~~ 330 (693)
.-+|++||++....-+..... ++..+......+..+|+||....-. ...+.....+.+.+.+.++...
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~---l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEE---FFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHH---HHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 348999999864321100000 1111111123455688887653211 1122334578999999999999
Q ss_pred HHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCC
Q 036977 331 LAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHS 373 (693)
Q Consensus 331 Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~g 373 (693)
++.+.+... ...--.++...|++.+.|
T Consensus 276 il~~~~~~~----------------~~~l~~e~l~~ia~~~~~ 302 (405)
T TIGR00362 276 ILQKKAEEE----------------GLELPDEVLEFIAKNIRS 302 (405)
T ss_pred HHHHHHHHc----------------CCCCCHHHHHHHHHhcCC
Confidence 999887533 112224566667766655
No 114
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.73 E-value=0.00053 Score=80.79 Aligned_cols=159 Identities=14% Similarity=0.225 Sum_probs=90.8
Q ss_pred CCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCC----CCEEEE-EEecCCCChHHHHHHH
Q 036977 156 DNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKL----IDKVVM-AEVTQNPDPQKIQDKL 230 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~~~~~i 230 (693)
....++||+.++.+++..|......-+.++|++|+|||++|..++........ .+..+| ++++ .+.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~--- 241 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALI--- 241 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHh---
Confidence 45678999999999999997666666779999999999999999988643211 122222 2221 110
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCccC---------ccccCCCCCCcccccccccCCCeEEEE
Q 036977 231 ASDLGMKFDLNDSIHHRASRLRERLK-QEKRVLIILDNIWTKLE---------LDAVGIPSGDVDEKDREDDQRRCTIIL 300 (693)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~-~~k~~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~Iiv 300 (693)
. +.... ...+.....+.+.+. .+++.+|++|+++.... ...+..|... .+ .-++|-
T Consensus 242 -a--~~~~~--g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--------~g-~i~~Ig 307 (852)
T TIGR03346 242 -A--GAKYR--GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--------RG-ELHCIG 307 (852)
T ss_pred -h--cchhh--hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--------cC-ceEEEE
Confidence 0 00000 122333333333332 23579999999985521 1111111111 22 234454
Q ss_pred ecCChhhh------hhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 301 TSRSRDLL------CIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 301 TtR~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
+|.....- .........+.+...+.++...++.....
T Consensus 308 aTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred eCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 44444320 00112345788999999999999876643
No 115
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.72 E-value=0.00037 Score=70.99 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=71.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKR 260 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~ 260 (693)
-+.++|++|+|||++|+.+++...........-++.++. .++ +..+.. ..... +.+.+..-..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g-----~~~~~----~~~~~~~a~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIG-----HTAPK----TKEILKRAMG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcc-----cchHH----HHHHHHHccC
Confidence 588999999999999998888765432222212343331 122 111111 11111 2222222234
Q ss_pred EEEEEeCCCCcc------Cc-----cccCCCCCCcccccccccCCCeEEEEecCChhhhhh-hc------CCCcEEEcCC
Q 036977 261 VLIILDNIWTKL------EL-----DAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLCI-DM------NSQKIFWIDA 322 (693)
Q Consensus 261 ~LlVlDdv~~~~------~~-----~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~~-~~------~~~~~~~l~~ 322 (693)
-+|++|+++... .+ +.+...+.+ ...+.+||+++.....-.. .. .....+.+++
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~--------~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~ 194 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN--------QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPD 194 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhc--------CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCC
Confidence 689999997431 11 111111111 3345677777654322110 00 1135799999
Q ss_pred CCHHHHHHHHHHhhhh
Q 036977 323 LSKEEALHLAKLQHLE 338 (693)
Q Consensus 323 L~~~ea~~Lf~~~~~~ 338 (693)
++.+|-.+++...+..
T Consensus 195 l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 195 YSEAELLVIAGLMLKE 210 (284)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999888754
No 116
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=6.8e-05 Score=78.43 Aligned_cols=144 Identities=19% Similarity=0.203 Sum_probs=81.8
Q ss_pred cccccccccccCccccccccCCCccc-----ccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecC-
Q 036977 513 QKCYEEMIGFRDIKDLQLSHFPRLQE-----IWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRN- 586 (693)
Q Consensus 513 ~~l~~l~~~~~~l~~l~~~~~~~L~~-----~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~- 586 (693)
.++.+|.+.+|.++.+| ..-++|+. ......+|....++|++|.+.+|.++.. +| .+|+.|++.+
T Consensus 52 ~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s--LP------~sLe~L~L~~n 122 (426)
T PRK15386 52 RASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG--LP------ESVRSLEIKGS 122 (426)
T ss_pred cCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccc--cc------cccceEEeCCC
Confidence 34455555555555554 11112221 1112245555557999999999987653 33 3467777743
Q ss_pred -CCCCcccc-ccceeccCCCC-c-ccccC-CC-CCcCEeecCCCcCcccccccccCCCCcCEEeccccc--cccccc-cc
Q 036977 587 -CDSLEEVL-HLEELNAKEEH-I-GPLFP-RL-SWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCP--DMETFI-SN 657 (693)
Q Consensus 587 -c~~l~~l~-~L~~L~l~~~~-l-~~~~~-~L-~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~--~L~~lp-~~ 657 (693)
|..+..|| +|+.|.+.+++ . ...++ .| .+|++|++.+|..+. +|..+- .+|++|++..+. .++--+ ..
T Consensus 123 ~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~~~sLeI~~~sL 199 (426)
T PRK15386 123 ATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQKTTWNISFEGF 199 (426)
T ss_pred CCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cccccc--ccCcEEEecccccccccCccccc
Confidence 44566775 68888875522 1 11111 23 589999999988664 565442 689999987753 211111 12
Q ss_pred ccccceeecccc
Q 036977 658 STSVLHMTADNK 669 (693)
Q Consensus 658 ~~~l~~l~~~~~ 669 (693)
+.++ .|...+|
T Consensus 200 P~nl-~L~f~n~ 210 (426)
T PRK15386 200 PDGL-DIDLQNS 210 (426)
T ss_pred cccc-Eechhhh
Confidence 3445 6766666
No 117
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.70 E-value=0.00072 Score=74.93 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=85.3
Q ss_pred CCCccccchHHHHHHHHHHHh---c---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 155 KDNEAFDSRMKVFQDVMEALK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
.....+.|-+..++++.+.+. . ...+-+.++|++|+|||++|+.+++..... | +.++
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--~-----~~i~---- 120 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSIS---- 120 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--e-----eecc----
Confidence 345567787777666554432 1 124568899999999999999999875432 2 2222
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccc--cCCCCC----Cccccccc----cc
Q 036977 223 PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDA--VGIPSG----DVDEKDRE----DD 292 (693)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~--l~~~~~----~~~~~~~~----~~ 292 (693)
..++.... .+ ...... ..+.+..+...+++|++||++....-.. +..... .+.+++.. ..
T Consensus 121 ~~~~~~~~---~g------~~~~~l-~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 121 GSDFVEMF---VG------VGASRV-RDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HHHHHHHH---hc------ccHHHH-HHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 11111110 01 111112 2222222223679999999976421100 000000 00000000 02
Q ss_pred CCCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 293 QRRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
..+..||.||.........+ .....+.+...+.++..++|..+..
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAK 239 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHh
Confidence 33456777776654322111 2345889999999999999987764
No 118
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.70 E-value=0.00036 Score=77.00 Aligned_cols=135 Identities=14% Similarity=0.161 Sum_probs=84.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEK 259 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (693)
..+.|+|..|+|||.|++++++.......-..++|++. .++..++...+... ....+++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y~~-- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRYRE-- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHhhc--
Confidence 45899999999999999999998764311234666654 34444544443211 12234444443
Q ss_pred cEEEEEeCCCCccC---ccccCCCCCCcccccccccCCCeEEEEecCChhh--------hhhhcCCCcEEEcCCCCHHHH
Q 036977 260 RVLIILDNIWTKLE---LDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL--------LCIDMNSQKIFWIDALSKEEA 328 (693)
Q Consensus 260 ~~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v--------~~~~~~~~~~~~l~~L~~~ea 328 (693)
.=+|||||++.... |+.. ++.++......|..||+||+...- +...+...-++.+...+.+..
T Consensus 378 ~DLLlIDDIq~l~gke~tqee------LF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEE------FFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred CCEEEEehhccccCCHHHHHH------HHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 35899999986522 2211 222333334456678888886421 122345567899999999999
Q ss_pred HHHHHHhhh
Q 036977 329 LHLAKLQHL 337 (693)
Q Consensus 329 ~~Lf~~~~~ 337 (693)
..++.+.+.
T Consensus 452 ~aIL~kka~ 460 (617)
T PRK14086 452 IAILRKKAV 460 (617)
T ss_pred HHHHHHHHH
Confidence 999998875
No 119
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.69 E-value=0.00021 Score=75.74 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=72.6
Q ss_pred CccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCC
Q 036977 157 NEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGM 236 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (693)
...+++.+..++.++..|.. .+.+.++|++|+|||++|+.+++.......|+.+.||.+++..+..+++.-+... +.
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CC
Confidence 34567788899999988864 3567889999999999999999988766678889999999888876655422100 00
Q ss_pred CCCCCCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCc
Q 036977 237 KFDLNDSIHHRASRLRERLK-QEKRVLIILDNIWTK 271 (693)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~L~-~~k~~LlVlDdv~~~ 271 (693)
....... -....+...-. ..+++++|+|++...
T Consensus 251 gy~~~~G--~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 GFRRKDG--IFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CeEecCc--hHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0000000 01111122211 136799999998755
No 120
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.00035 Score=75.59 Aligned_cols=138 Identities=16% Similarity=0.138 Sum_probs=81.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQE 258 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (693)
...+.|+|+.|+|||+|++++++..... ...++|++. ..+...+...+... ....+++.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~---------~~~~f~~~~~-- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG---------EMQRFRQFYR-- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc---------hHHHHHHHcc--
Confidence 3568899999999999999999987643 234566543 34444555554321 1123444443
Q ss_pred CcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChh-hh-------hhhcCCCcEEEcCCCCHHHHHH
Q 036977 259 KRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD-LL-------CIDMNSQKIFWIDALSKEEALH 330 (693)
Q Consensus 259 k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~-v~-------~~~~~~~~~~~l~~L~~~ea~~ 330 (693)
..-++++||++........... ++..+......|..||+||.... .. ...+.....+.+.+++.++...
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qee---lf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEE---FFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHH---HHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence 3458999998765321110000 11111111224567888886531 11 1223445789999999999999
Q ss_pred HHHHhhhh
Q 036977 331 LAKLQHLE 338 (693)
Q Consensus 331 Lf~~~~~~ 338 (693)
++.+.+..
T Consensus 279 iL~~k~~~ 286 (445)
T PRK12422 279 FLERKAEA 286 (445)
T ss_pred HHHHHHHH
Confidence 99888753
No 121
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.69 E-value=1.7e-05 Score=84.00 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=38.6
Q ss_pred CchhhcCCCCCCEEEecCCC-------CCccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccc-cccC
Q 036977 569 PANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTG-NIIE 636 (693)
Q Consensus 569 ~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~-~i~~ 636 (693)
|+..|..|+.|+.|++.... -...|++|+.|.+..|++..+ |-.|.++++|+|.. +++..+.+ ++..
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFG 291 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccc
Confidence 33455556666666663332 011455555555555554444 44455555555554 44554433 3445
Q ss_pred CCCcCEEecc
Q 036977 637 LPELRYLTIE 646 (693)
Q Consensus 637 L~~L~~L~i~ 646 (693)
|++|+.|+++
T Consensus 292 Lt~L~~L~lS 301 (873)
T KOG4194|consen 292 LTSLEQLDLS 301 (873)
T ss_pred cchhhhhccc
Confidence 5555555555
No 122
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.68 E-value=0.00063 Score=72.41 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=89.6
Q ss_pred CccccchHHHHHHHHHHHh----c---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 157 NEAFDSRMKVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
...+.|-+..+++|.+.+. . ..++-+.++|++|+|||++|+.+++..... | +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i~~------ 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRVVG------ 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEeh------
Confidence 4557788888888777653 1 245778999999999999999999875432 2 12211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcc--ccCCCCC----Cccccccc----ccC
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELD--AVGIPSG----DVDEKDRE----DDQ 293 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~--~l~~~~~----~~~~~~~~----~~~ 293 (693)
..+... .++ . .......+........+.+|++|+++....-. .-...-. .+.+++.. ...
T Consensus 213 s~l~~k---~~g------e-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 SEFVQK---YLG------E-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HHHHHH---hcc------h-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111111 111 1 11222333333333478999999987541100 0000000 00011111 023
Q ss_pred CCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 294 RRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 294 ~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.+..||.||.........+ .....+.+...+.++..++|..+..
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 4667888888766542221 2345789999999999888886654
No 123
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.68 E-value=0.00039 Score=76.12 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=92.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQE 258 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (693)
...+.|+|.+|+|||+|++.+++....+..-..++|++.. ++...+...+... ....+.+.++.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~---------~~~~~~~~~~~- 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN---------TMEEFKEKYRS- 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC---------cHHHHHHHHhc-
Confidence 3568999999999999999999998754222345666543 3334444444211 12334445543
Q ss_pred CcEEEEEeCCCCccC---c-cccCCCCCCcccccccccCCCeEEEEecCChhhh--------hhhcCCCcEEEcCCCCHH
Q 036977 259 KRVLIILDNIWTKLE---L-DAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL--------CIDMNSQKIFWIDALSKE 326 (693)
Q Consensus 259 k~~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~--------~~~~~~~~~~~l~~L~~~ 326 (693)
.-+|++||++.... + +.+ +..+......|..||+||....-. ...+.....+.+++.+.+
T Consensus 212 -~dlLiiDDi~~l~~~~~~~~~l-------~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 212 -VDVLLIDDIQFLAGKERTQEEF-------FHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLE 283 (450)
T ss_pred -CCEEEEehhhhhcCCHHHHHHH-------HHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHH
Confidence 45899999975421 1 111 111111123455588887654211 122344568999999999
Q ss_pred HHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCC
Q 036977 327 EALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSL 374 (693)
Q Consensus 327 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl 374 (693)
+...++.+.+... ...--.++...|++.+.|-
T Consensus 284 ~r~~il~~~~~~~----------------~~~l~~e~l~~ia~~~~~~ 315 (450)
T PRK00149 284 TRIAILKKKAEEE----------------GIDLPDEVLEFIAKNITSN 315 (450)
T ss_pred HHHHHHHHHHHHc----------------CCCCCHHHHHHHHcCcCCC
Confidence 9999999887532 1122345667777766653
No 124
>PRK08181 transposase; Validated
Probab=97.67 E-value=0.0013 Score=65.89 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=60.2
Q ss_pred HHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Q 036977 172 EALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRL 251 (693)
Q Consensus 172 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 251 (693)
+|+. +..-+.++|++|+|||.||..+++....+ ...++|+.+ .++...+..+.. . .... .+
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~----~-~~~~----~~ 161 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR----E-LQLE----SA 161 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh----C-CcHH----HH
Confidence 4553 33558999999999999999999887644 334566543 445555533321 0 1111 22
Q ss_pred HHHHhcCCcEEEEEeCCCCcc--Ccc-ccCCCCCCcccccccccCCCeEEEEecCChh
Q 036977 252 RERLKQEKRVLIILDNIWTKL--ELD-AVGIPSGDVDEKDREDDQRRCTIILTSRSRD 306 (693)
Q Consensus 252 ~~~L~~~k~~LlVlDdv~~~~--~~~-~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~ 306 (693)
.+.+. +.-|||+||+.... .+. .. +++++......+ .+||||....
T Consensus 162 l~~l~--~~dLLIIDDlg~~~~~~~~~~~------Lf~lin~R~~~~-s~IiTSN~~~ 210 (269)
T PRK08181 162 IAKLD--KFDLLILDDLAYVTKDQAETSV------LFELISARYERR-SILITANQPF 210 (269)
T ss_pred HHHHh--cCCEEEEeccccccCCHHHHHH------HHHHHHHHHhCC-CEEEEcCCCH
Confidence 33343 34699999986431 111 11 223333223333 5888887653
No 125
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.65 E-value=5e-05 Score=57.58 Aligned_cols=54 Identities=28% Similarity=0.500 Sum_probs=39.0
Q ss_pred ccceeccCCCCccc----ccCCCCCcCEeecCCCcCccccccc-ccCCCCcCEEeccccc
Q 036977 595 HLEELNAKEEHIGP----LFPRLSWLRLIDLPKLKRFYNFTGN-IIELPELRYLTIENCP 649 (693)
Q Consensus 595 ~L~~L~l~~~~l~~----~~~~L~~L~~L~L~~c~~l~~LP~~-i~~L~~L~~L~i~~C~ 649 (693)
+|++|++++|++.. .+..+++|++|++++ +.+..+|.+ +..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444333 378899999999996 678888764 4799999999999874
No 126
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.003 Score=66.02 Aligned_cols=178 Identities=17% Similarity=0.147 Sum_probs=111.2
Q ss_pred CCCccccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKL 230 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 230 (693)
..+....||+.++..+.+|+. .+..+-+-|.|-+|.|||.+...++.+......-..++++++-.-....+++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 456778999999999999985 3467889999999999999999999887654222345777777666677778888
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCC-cEEEEEeCCCCccC--ccccCCCCCCcccccccccCCCeEEEEecCChhh
Q 036977 231 ASDLGMKFDLNDSIHHRASRLRERLKQEK-RVLIILDNIWTKLE--LDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~k-~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v 307 (693)
...+-.....+....+....+.....+.+ .+|+|+|+++.... -..+...|.+ -.-+++++|+.---..+
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFew-------p~lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEW-------PKLPNSRIILIGIANSL 299 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhc-------ccCCcceeeeeeehhhh
Confidence 77762111111222445555666665534 68999999885521 1111111100 02234554443222111
Q ss_pred ---------hhh-hcCCCcEEEcCCCCHHHHHHHHHHhhhhh
Q 036977 308 ---------LCI-DMNSQKIFWIDALSKEEALHLAKLQHLEI 339 (693)
Q Consensus 308 ---------~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 339 (693)
+.. ..-....+.-.|.+.++-.+++.......
T Consensus 300 DlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 300 DLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred hHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 010 01123477889999999999999987643
No 127
>CHL00181 cbbX CbbX; Provisional
Probab=97.65 E-value=0.0012 Score=67.34 Aligned_cols=134 Identities=17% Similarity=0.200 Sum_probs=72.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEK 259 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (693)
..+.++|++|+||||+|+.+++.....+.-...-|+.++ ..++.... .+. ..... .+.+....
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~~~~---~g~------~~~~~----~~~l~~a~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLVGQY---IGH------TAPKT----KEVLKKAM 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHHHHH---hcc------chHHH----HHHHHHcc
Confidence 357899999999999999998876432221111244443 11221111 111 11111 22222113
Q ss_pred cEEEEEeCCCCcc------Cc-----cccCCCCCCcccccccccCCCeEEEEecCChhhhhh-------hcCCCcEEEcC
Q 036977 260 RVLIILDNIWTKL------EL-----DAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLCI-------DMNSQKIFWID 321 (693)
Q Consensus 260 ~~LlVlDdv~~~~------~~-----~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~~-------~~~~~~~~~l~ 321 (693)
.-+|++|+++... ++ ..+.....+ ...+.+||+++....+... .-.....+...
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~--------~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~ 194 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN--------QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFP 194 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhc--------CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcC
Confidence 3599999997531 11 111111111 3345677777764433110 01124589999
Q ss_pred CCCHHHHHHHHHHhhhh
Q 036977 322 ALSKEEALHLAKLQHLE 338 (693)
Q Consensus 322 ~L~~~ea~~Lf~~~~~~ 338 (693)
+++.++..+++...+..
T Consensus 195 ~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 195 DYTPEELLQIAKIMLEE 211 (287)
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999888753
No 128
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.62 E-value=0.00075 Score=72.40 Aligned_cols=160 Identities=14% Similarity=0.122 Sum_probs=90.1
Q ss_pred CccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 157 NEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
..++.|.+..++.+.+.+.- ...+-+.++|++|+|||++|+.+++..... | +.+..++
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f---i~V~~se---- 252 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F---LRVVGSE---- 252 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E---EEEecch----
Confidence 35567889888888877631 234678899999999999999999976532 3 1121111
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcc--ccCCCCC----Ccccccccc----cC
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELD--AVGIPSG----DVDEKDRED----DQ 293 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~--~l~~~~~----~~~~~~~~~----~~ 293 (693)
+.... ++ ........+.+......+.+|+||+++....-. .....-. .+.+++... ..
T Consensus 253 --L~~k~---~G-------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 253 --LIQKY---LG-------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred --hhhhh---cc-------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 11110 10 111222333333333467899999986431100 0000000 000111100 23
Q ss_pred CCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 294 RRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 294 ~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.+.+||.||.......... .....+.+...+.++..++|..+..
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 4667888888766543322 1245889999999999999987764
No 129
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.61 E-value=4.1e-05 Score=71.23 Aligned_cols=93 Identities=25% Similarity=0.403 Sum_probs=32.2
Q ss_pred CcceeeecCCCCCCcCCCchhhc-CCCCCCEEEecCCC-----CCccccccceeccCCCCcccc---c-CCCCCcCEeec
Q 036977 552 NLRELVVDDCTNMSSAIPANLLR-CLNNLRYLEVRNCD-----SLEEVLHLEELNAKEEHIGPL---F-PRLSWLRLIDL 621 (693)
Q Consensus 552 ~L~~L~i~~c~~~~~~~~~~~l~-~L~~L~~L~l~~c~-----~l~~l~~L~~L~l~~~~l~~~---~-~~L~~L~~L~L 621 (693)
+++.|.+.++.-.. ...+. .|.+|+.|++++|. .+..+++|++|++++|.+..+ + ..+++|+.|++
T Consensus 20 ~~~~L~L~~n~I~~----Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQIST----IENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccc----ccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 57778887754322 12444 57888899988874 334667788888888777665 2 35788888888
Q ss_pred CCCcCcccccc--cccCCCCcCEEeccccc
Q 036977 622 PKLKRFYNFTG--NIIELPELRYLTIENCP 649 (693)
Q Consensus 622 ~~c~~l~~LP~--~i~~L~~L~~L~i~~C~ 649 (693)
.+ +++..+-. .+..+++|+.|++.++|
T Consensus 96 ~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 96 SN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 87 66665532 34477888888888876
No 130
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.60 E-value=7.2e-05 Score=85.64 Aligned_cols=158 Identities=18% Similarity=0.224 Sum_probs=91.2
Q ss_pred CccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccC-C---CCEEEEEEecCCCChHHHHHHHHH
Q 036977 157 NEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDK-L---IDKVVMAEVTQNPDPQKIQDKLAS 232 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~---F~~~~wv~vs~~~~~~~~~~~i~~ 232 (693)
.+.++||++++.++++.|......-+.++|++|+|||++|+.++....... . .+..+|. .+... ++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-----l~~~~----lla 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-----LDIGS----LLA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-----ccHHH----Hhc
Confidence 456899999999999998765555667899999999999999998753321 1 1334442 11111 110
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC----------ccccCCCCCCcccccccccCCCeEEEEec
Q 036977 233 DLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE----------LDAVGIPSGDVDEKDREDDQRRCTIILTS 302 (693)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~----------~~~l~~~~~~~~~~~~~~~~~~~~IivTt 302 (693)
|.... .+.+.....+.+.+....+.+|++|+++.... ...+..++. ....-++|-+|
T Consensus 256 --G~~~~--Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIgAT 322 (758)
T PRK11034 256 --GTKYR--GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIGST 322 (758)
T ss_pred --ccchh--hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEecC
Confidence 11100 12333344444444433568999999985411 111111111 11234455555
Q ss_pred CChhhh------hhhcCCCcEEEcCCCCHHHHHHHHHHhh
Q 036977 303 RSRDLL------CIDMNSQKIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 303 R~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
...... .........+.+++.+.+++.+++....
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 443321 0011234589999999999999998654
No 131
>PRK06620 hypothetical protein; Validated
Probab=97.60 E-value=0.00018 Score=69.87 Aligned_cols=111 Identities=17% Similarity=0.035 Sum_probs=67.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEK 259 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (693)
+.+.|+|++|+|||+|++.+++.... .++. ..+. .. +..+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~--------------------~~--------~~~~--~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF--------------------NE--------EILE--K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh--------------------ch--------hHHh--c
Confidence 66899999999999999998776431 1111 0000 00 1112 2
Q ss_pred cEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhh------hhhcCCCcEEEcCCCCHHHHHHHHH
Q 036977 260 RVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL------CIDMNSQKIFWIDALSKEEALHLAK 333 (693)
Q Consensus 260 ~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~ 333 (693)
.-++++||++...+. . ++..+......|..||+|++..... ...+....++.+++++.++...++.
T Consensus 86 ~d~lliDdi~~~~~~-~-------lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 86 YNAFIIEDIENWQEP-A-------LLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred CCEEEEeccccchHH-H-------HHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence 357888999843211 1 1111122235577899999865431 2223455689999999999888887
Q ss_pred Hhhh
Q 036977 334 LQHL 337 (693)
Q Consensus 334 ~~~~ 337 (693)
+.+.
T Consensus 158 k~~~ 161 (214)
T PRK06620 158 KHFS 161 (214)
T ss_pred HHHH
Confidence 7764
No 132
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.57 E-value=0.00035 Score=62.77 Aligned_cols=91 Identities=21% Similarity=0.105 Sum_probs=55.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQE 258 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (693)
...+.|+|++|+||||+++.++....... ..+++++.+........... ...................+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999998876542 34666666554333222211 111111111233344444555555543
Q ss_pred CcEEEEEeCCCCccC
Q 036977 259 KRVLIILDNIWTKLE 273 (693)
Q Consensus 259 k~~LlVlDdv~~~~~ 273 (693)
+..++++|+++....
T Consensus 78 ~~~viiiDei~~~~~ 92 (148)
T smart00382 78 KPDVLILDEITSLLD 92 (148)
T ss_pred CCCEEEEECCcccCC
Confidence 449999999987744
No 133
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.0083 Score=63.13 Aligned_cols=139 Identities=16% Similarity=0.174 Sum_probs=87.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
....+.|+|..|.|||-|++++++.......-..+++++ .+....+++.++.. .....+++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y-~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY-S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh-c
Confidence 368899999999999999999999987652222455542 33444455444421 2334555555 3
Q ss_pred CCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhh--------hhhcCCCcEEEcCCCCHHHHH
Q 036977 258 EKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL--------CIDMNSQKIFWIDALSKEEAL 329 (693)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~ 329 (693)
-=++++||++-....+..... ++..+......|..||+|++...-. ...+...-++.+++.+.+...
T Consensus 176 --~dlllIDDiq~l~gk~~~qee---fFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 176 --LDLLLIDDIQFLAGKERTQEE---FFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred --cCeeeechHhHhcCChhHHHH---HHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 248899999865322111000 1122222244555899999665421 123445679999999999999
Q ss_pred HHHHHhhh
Q 036977 330 HLAKLQHL 337 (693)
Q Consensus 330 ~Lf~~~~~ 337 (693)
.++.+.+.
T Consensus 251 aiL~kka~ 258 (408)
T COG0593 251 AILRKKAE 258 (408)
T ss_pred HHHHHHHH
Confidence 99999765
No 134
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.53 E-value=0.00016 Score=68.02 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=73.6
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHh
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDL 234 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 234 (693)
....++||-++.++++--...+++.+-+.|.||+|+||||-+..+++..-...+-+.+.-.+.|....+.-+-..|-.--
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FA 103 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFA 103 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHH
Confidence 34567899999999988888888999999999999999999999998877655556777777777766655544431110
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 235 GMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
. -+-.+..++.-++|||+.++.
T Consensus 104 Q---------------~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 104 Q---------------KKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred H---------------hhccCCCCceeEEEeeccchh
Confidence 0 011111246678999998875
No 135
>PRK08116 hypothetical protein; Validated
Probab=97.52 E-value=0.00029 Score=71.07 Aligned_cols=105 Identities=18% Similarity=0.194 Sum_probs=62.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEK 259 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (693)
..+.++|.+|+|||.||.++++....+ ...++|++ ..+++..+......... . ....+.+.+.. -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~--~----~~~~~~~~l~~-~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK--E----DENEIIRSLVN-A 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc--c----cHHHHHHHhcC-C
Confidence 458899999999999999999998754 34466665 33455555554432211 1 12234445554 2
Q ss_pred cEEEEEeCCCC--ccCccccCCCCCCcccccccccCCCeEEEEecCCh
Q 036977 260 RVLIILDNIWT--KLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSR 305 (693)
Q Consensus 260 ~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~ 305 (693)
=||||||+.. ..+|..-. ++..+......+..+|+||...
T Consensus 180 -dlLviDDlg~e~~t~~~~~~-----l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 -DLLILDDLGAERDTEWAREK-----VYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -CEEEEecccCCCCCHHHHHH-----HHHHHHHHHHCCCCEEEECCCC
Confidence 3899999953 23343210 1122222234556688888755
No 136
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.52 E-value=5.8e-06 Score=91.98 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=40.6
Q ss_pred hhcccccccccccCcccccccc--CCCcccccCC----CCCCcccc--cCcceeeecCCCCCCcCCCchhhcCCCCCCEE
Q 036977 511 TIQKCYEEMIGFRDIKDLQLSH--FPRLQEIWHG----QALPVSFF--NNLRELVVDDCTNMSSAIPANLLRCLNNLRYL 582 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~~l~~~~--~~~L~~~~~~----~~~~~~~~--~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L 582 (693)
...++..+.++++.++.+|.-. |.++..+... ..+|..++ .+|++|.+.+|+- ...|..+..+++|++|
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel---~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL---EYIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh---hhCCCcccccceeeee
Confidence 4567777788888887777222 6666532221 23343322 3555555555432 2345555667777777
Q ss_pred EecCC
Q 036977 583 EVRNC 587 (693)
Q Consensus 583 ~l~~c 587 (693)
++...
T Consensus 316 dL~~N 320 (1081)
T KOG0618|consen 316 DLQSN 320 (1081)
T ss_pred eehhc
Confidence 76443
No 137
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.49 E-value=2e-05 Score=76.64 Aligned_cols=127 Identities=20% Similarity=0.219 Sum_probs=97.1
Q ss_pred chhhcccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC
Q 036977 509 NSTIQKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD 588 (693)
Q Consensus 509 ~~~~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~ 588 (693)
....+.+..+.+++|.++.+..+. .+ .+.++.|.+++..-.. -..+..|++|..|++++..
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESv-----------KL----~Pkir~L~lS~N~i~~----v~nLa~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESV-----------KL----APKLRRLILSQNRIRT----VQNLAELPQLQLLDLSGNL 340 (490)
T ss_pred cchHhhhhhccccccchhhhhhhh-----------hh----ccceeEEeccccceee----ehhhhhcccceEeecccch
Confidence 345677788888888887765544 11 3578888887644322 3458889999999998864
Q ss_pred C--Cc----cccccceeccCCCCcccc--cCCCCCcCEeecCCCcCccccc--ccccCCCCcCEEecccccccccccc
Q 036977 589 S--LE----EVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFT--GNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 589 ~--l~----~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP--~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
- +. .|-+.+.|.+.+|.++.+ +.+|.+|.+|++++ ++++.+- .+|++||.|++|.+.+.| |..+|+
T Consensus 341 Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 341 LAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred hHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 1 11 567888999999998888 89999999999998 7788774 589999999999999987 666665
No 138
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.45 E-value=0.00018 Score=64.21 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=41.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC-c
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEK-R 260 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k-~ 260 (693)
|.|+|++|+||||+|+.+++.... ..+.++.+...+. ...+.......+.+..+... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc----------------cccccccccccccccccccccc
Confidence 579999999999999999999752 2344444322100 00112222233333333323 7
Q ss_pred EEEEEeCCCCc
Q 036977 261 VLIILDNIWTK 271 (693)
Q Consensus 261 ~LlVlDdv~~~ 271 (693)
.+|++||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999865
No 139
>PRK10536 hypothetical protein; Provisional
Probab=97.41 E-value=0.0014 Score=64.37 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=44.2
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 214 (693)
.+...+.+|......++.++.+. .++.++|.+|+|||+||.+++.+.-..+.|+.++.
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 34556778999999999988653 59999999999999999999986432233554444
No 140
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.40 E-value=0.00086 Score=71.69 Aligned_cols=138 Identities=23% Similarity=0.204 Sum_probs=86.1
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCC
Q 036977 162 SRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLN 241 (693)
Q Consensus 162 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 241 (693)
.|.....++.+.+..... ++.|.|+-++||||+++.+....... .++++..+......-+.+..+
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~--------- 85 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLR--------- 85 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHH---------
Confidence 455566666666644433 99999999999999996666554332 555544332211111111111
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhh-----hhhcCCCc
Q 036977 242 DSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL-----CIDMNSQK 316 (693)
Q Consensus 242 ~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~-----~~~~~~~~ 316 (693)
.+.+.-.. ++..|+||.|+....|......+.+ .++. +|++|+-+.... ....+...
T Consensus 86 --------~~~~~~~~-~~~yifLDEIq~v~~W~~~lk~l~d--------~~~~-~v~itgsss~ll~~~~~~~L~GR~~ 147 (398)
T COG1373 86 --------AYIELKER-EKSYIFLDEIQNVPDWERALKYLYD--------RGNL-DVLITGSSSSLLSKEISESLAGRGK 147 (398)
T ss_pred --------HHHHhhcc-CCceEEEecccCchhHHHHHHHHHc--------cccc-eEEEECCchhhhccchhhhcCCCce
Confidence 11111111 5689999999999999886555554 4444 788888777654 22234567
Q ss_pred EEEcCCCCHHHHHHHH
Q 036977 317 IFWIDALSKEEALHLA 332 (693)
Q Consensus 317 ~~~l~~L~~~ea~~Lf 332 (693)
.+.+.||+..|...+-
T Consensus 148 ~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 148 DLELYPLSFREFLKLK 163 (398)
T ss_pred eEEECCCCHHHHHhhc
Confidence 8999999999887653
No 141
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.40 E-value=0.00011 Score=68.43 Aligned_cols=72 Identities=24% Similarity=0.307 Sum_probs=28.5
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC--CCc-----cccccceeccCCCCcccc-----cCCCCCcC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD--SLE-----EVLHLEELNAKEEHIGPL-----FPRLSWLR 617 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~--~l~-----~l~~L~~L~l~~~~l~~~-----~~~L~~L~ 617 (693)
+.+|+.|.+.++.-.. -..+..|+.|++|++++.. .+. .+|+|++|++++|.+.++ +..+++|+
T Consensus 41 l~~L~~L~Ls~N~I~~----l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK----LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp -TT--EEE-TTS--S------TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hcCCCEEECCCCCCcc----ccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 4567777777654322 1356677888888886653 221 467888888888776655 56678888
Q ss_pred EeecCCCc
Q 036977 618 LIDLPKLK 625 (693)
Q Consensus 618 ~L~L~~c~ 625 (693)
.|+|.+.+
T Consensus 117 ~L~L~~NP 124 (175)
T PF14580_consen 117 VLSLEGNP 124 (175)
T ss_dssp EEE-TT-G
T ss_pred eeeccCCc
Confidence 88887744
No 142
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0041 Score=64.22 Aligned_cols=191 Identities=14% Similarity=0.100 Sum_probs=106.1
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhcc--------------CCCCEEEEEEecCCCC
Q 036977 158 EAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMED--------------KLIDKVVMAEVTQNPD 222 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------~~F~~~~wv~vs~~~~ 222 (693)
..++|.+..++.+...+..++. ....++|+.|+||+++|..+.+..-.. +|.| ..|+.-.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 4678999999999999987764 889999999999999999988875322 1222 23332110000
Q ss_pred hHHHHHHHHHHhCC--CCCCCCCHHHHHHHHHHHHhc----CCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCC
Q 036977 223 PQKIQDKLASDLGM--KFDLNDSIHHRASRLRERLKQ----EKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQR 294 (693)
Q Consensus 223 ~~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~L~~----~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~ 294 (693)
-..+-.+-+...+. ........+ .+..+.+.+.. +++-++|+|+++... ..+.+...+.. ..+
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE--------Pp~ 153 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE--------PGN 153 (314)
T ss_pred ccccchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC--------CCC
Confidence 00000111111110 000011122 22334444432 366799999987553 23333222221 222
Q ss_pred CeEEEEecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCC
Q 036977 295 RCTIILTSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSL 374 (693)
Q Consensus 295 ~~~IivTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl 374 (693)
..-|++|++...+..........+.+.+++.++..+.+.+..... ........++...+|-
T Consensus 154 ~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-------------------~~~~~~~~l~~~a~Gs 214 (314)
T PRK07399 154 GTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-------------------ILNINFPELLALAQGS 214 (314)
T ss_pred CeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-------------------cchhHHHHHHHHcCCC
Confidence 333444444444444334455699999999999999988764211 0011135677888888
Q ss_pred ccc
Q 036977 375 KLE 377 (693)
Q Consensus 375 PLa 377 (693)
|..
T Consensus 215 ~~~ 217 (314)
T PRK07399 215 PGA 217 (314)
T ss_pred HHH
Confidence 864
No 143
>CHL00176 ftsH cell division protein; Validated
Probab=97.38 E-value=0.0033 Score=70.94 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=83.6
Q ss_pred CccccchHHHHHHHHH---HHhcC---------CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChH
Q 036977 157 NEAFDSRMKVFQDVME---ALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQ 224 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~---~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 224 (693)
..++.|.++..+++.+ .+... ..+-+.++|++|+|||+||+.++...... | +.++.++
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p--~---i~is~s~----- 251 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP--F---FSISGSE----- 251 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--e---eeccHHH-----
Confidence 3456676665555444 33321 24568999999999999999999875432 1 1222111
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcccc--CCCCCC----ccccccc----ccCC
Q 036977 225 KIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAV--GIPSGD----VDEKDRE----DDQR 294 (693)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l--~~~~~~----~~~~~~~----~~~~ 294 (693)
+.... .+ .... ....+.+......+++|++||++....-..- ...... +.+++.. ....
T Consensus 252 -f~~~~---~g------~~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 252 -FVEMF---VG------VGAA-RVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred -HHHHh---hh------hhHH-HHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 11100 00 0111 1222222233347899999999754210000 000000 0001100 0234
Q ss_pred CeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 295 RCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 295 ~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
+..||.||.........+ .....+.+...+.++..+++..++.
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~ 367 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHAR 367 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHh
Confidence 566777777655432211 1235788999999999999988765
No 144
>PRK06526 transposase; Provisional
Probab=97.38 E-value=0.0026 Score=63.44 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=44.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
+..-+.++|++|+|||+||..+.......+ + .+.|+ +..++...+..... . .. ....+. .+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~----~-~~---~~~~l~-~l~- 158 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH----A-GR---LQAELV-KLG- 158 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh----c-Cc---HHHHHH-Hhc-
Confidence 345689999999999999999998865432 2 23442 33444444433211 0 11 112222 222
Q ss_pred CCcEEEEEeCCCCc
Q 036977 258 EKRVLIILDNIWTK 271 (693)
Q Consensus 258 ~k~~LlVlDdv~~~ 271 (693)
+.-+||+||+...
T Consensus 159 -~~dlLIIDD~g~~ 171 (254)
T PRK06526 159 -RYPLLIVDEVGYI 171 (254)
T ss_pred -cCCEEEEcccccC
Confidence 3469999998743
No 145
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=9.1e-05 Score=76.09 Aligned_cols=98 Identities=18% Similarity=0.270 Sum_probs=60.2
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCc-------cccccceeccCCCCcccc-----cCCCCCcC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLE-------EVLHLEELNAKEEHIGPL-----FPRLSWLR 617 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~-------~l~~L~~L~l~~~~l~~~-----~~~L~~L~ 617 (693)
++.|+.|.+..|.-. +......+..+++|+.|+++...++- .+..|+.|+|++|++... .+.|+.|.
T Consensus 196 l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 567777777777543 33444455567777777776663221 345677777777665443 67777777
Q ss_pred EeecCCCcCcccc--ccc-----ccCCCCcCEEeccccc
Q 036977 618 LIDLPKLKRFYNF--TGN-----IIELPELRYLTIENCP 649 (693)
Q Consensus 618 ~L~L~~c~~l~~L--P~~-----i~~L~~L~~L~i~~C~ 649 (693)
.|++.. +++.++ |+. ...+++|++|++...+
T Consensus 275 ~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 275 QLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhccc-cCcchhcCCCccchhhhcccccceeeecccCc
Confidence 777776 334433 332 2367777888777653
No 146
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0023 Score=70.36 Aligned_cols=167 Identities=22% Similarity=0.221 Sum_probs=94.5
Q ss_pred ccccchHHHHHHHHHHHh------cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLA 231 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 231 (693)
..-+|-++..++|++.|. +-+.+++++||++|+|||.|++.+++....+ | +-++++.-.+..++-.---
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhccccc
Confidence 445799999999999984 1245899999999999999999999987755 3 2344554444443211111
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC---------ccccCCCCCC--ccccccccc--CCCeEE
Q 036977 232 SDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE---------LDAVGIPSGD--VDEKDREDD--QRRCTI 298 (693)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~---------~~~l~~~~~~--~~~~~~~~~--~~~~~I 298 (693)
..+|. -+...++.+++. + .++=+++||+++.... +-++..|-.+ |.+..-+.. -..-..
T Consensus 398 TYIGa------mPGrIiQ~mkka-~-~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 398 TYIGA------MPGKIIQGMKKA-G-VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ccccc------CChHHHHHHHHh-C-CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 11111 112223333322 1 2567999999885421 1111111100 111111111 122333
Q ss_pred EEecCChh-hhhhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 299 ILTSRSRD-LLCIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 299 ivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
|.|..+-+ +....+..-.++++.+.+.+|-.++-.++..
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 33433333 2223345567999999999999999888775
No 147
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.35 E-value=0.015 Score=68.11 Aligned_cols=164 Identities=23% Similarity=0.166 Sum_probs=86.7
Q ss_pred ccccchHHHHHHHHHHHhc------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKD------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLA 231 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 231 (693)
..++|.++.++.|.+++.. .+.+++.++|++|+|||++|+.+++..... |- -++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~~---~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--FV---RFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--eE---EEeCCCcccHHHHcCC--
Confidence 3477999999998887641 134689999999999999999999987533 32 2223332222221110
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCc------cccC---C-----CCCCcccccc-cccCCCe
Q 036977 232 SDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLEL------DAVG---I-----PSGDVDEKDR-EDDQRRC 296 (693)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~------~~l~---~-----~~~~~~~~~~-~~~~~~~ 296 (693)
..... ..........+...- . .+-+++||+++....- ..+. . .|.+ ..+. .....+.
T Consensus 393 ---~~~~~-g~~~g~i~~~l~~~~-~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d--~~~~~~~d~s~v 464 (775)
T TIGR00763 393 ---RRTYV-GAMPGRIIQGLKKAK-T-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSD--HYLDVPFDLSKV 464 (775)
T ss_pred ---CCcee-CCCCchHHHHHHHhC-c-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCcccc--ccCCceeccCCE
Confidence 00000 011122223333222 2 3348899998865210 0010 0 0110 0000 0011344
Q ss_pred EEEEecCChhhh-hhhcCCCcEEEcCCCCHHHHHHHHHHhh
Q 036977 297 TIILTSRSRDLL-CIDMNSQKIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 297 ~IivTtR~~~v~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
.+|.||...... ........++.+.+++.++-.+++..+.
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 455666554322 1122334689999999999988887765
No 148
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.32 E-value=0.0027 Score=69.33 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=85.3
Q ss_pred CccccchHHHHHHHHHHHh---c-------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHH
Q 036977 157 NEAFDSRMKVFQDVMEALK---D-------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKI 226 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~---~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 226 (693)
...+.|.+..++.+..... . ..++-|.++|++|+|||.+|+.+++..... | +-++.+.-+
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~l~----- 296 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGKLF----- 296 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHHhc-----
Confidence 3456677766655554221 0 235678999999999999999999986532 2 222222100
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCc-cccCCC--CCC-cccccccc--cCCCeEEEE
Q 036977 227 QDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLEL-DAVGIP--SGD-VDEKDRED--DQRRCTIIL 300 (693)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~-~~l~~~--~~~-~~~~~~~~--~~~~~~Iiv 300 (693)
. ..-. .+ +.....+.+..+...+++|++|+++....- ..-... ... +..++... ...+.-||.
T Consensus 297 -----~----~~vG-es-e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 297 -----G----GIVG-ES-ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred -----c----cccC-hH-HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 0 0000 11 122222333333347899999999854210 000000 000 00000000 233445677
Q ss_pred ecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhhh
Q 036977 301 TSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHLE 338 (693)
Q Consensus 301 TtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~ 338 (693)
||.........+ ..+..+.+..-+.++..++|..+...
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 777665332222 23468889999999999999888754
No 149
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.01 Score=62.13 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=55.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecC-CCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQ-NPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
..+++++|++|+||||++..+......+.....+.+++... .....+-++...+.++.+.....+..+....+. .+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 47999999999999999999998865431123566665433 234455566667777776544333333333333 3333
Q ss_pred CCcEEEEEeCCC
Q 036977 258 EKRVLIILDNIW 269 (693)
Q Consensus 258 ~k~~LlVlDdv~ 269 (693)
+-++++|..-
T Consensus 216 --~DlVLIDTaG 225 (374)
T PRK14722 216 --KHMVLIDTIG 225 (374)
T ss_pred --CCEEEEcCCC
Confidence 4677799874
No 150
>PRK08118 topology modulation protein; Reviewed
Probab=97.30 E-value=0.00014 Score=67.86 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=29.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhcc-CCCCEEEE
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMED-KLIDKVVM 214 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 214 (693)
+-|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999997654 45676775
No 151
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.011 Score=59.93 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=94.9
Q ss_pred CccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 157 NEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
...+-|-++.+++|.+...- +.++=|.++|++|.|||-||++|+++.... | +.|..
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----Irvvg---- 218 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVVG---- 218 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEecc----
Confidence 44566888888888887631 356788999999999999999999986644 3 22221
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC------------c----cccCCCCCCcccc
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE------------L----DAVGIPSGDVDEK 287 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~------------~----~~l~~~~~~~~~~ 287 (693)
.++.+. .+| .-..+...+.+.-+...++.|.+|+++.... . -++...+..
T Consensus 219 SElVqK---YiG-------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG---- 284 (406)
T COG1222 219 SELVQK---YIG-------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG---- 284 (406)
T ss_pred HHHHHH---Hhc-------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC----
Confidence 111111 122 1233566666666667899999999874410 0 001011110
Q ss_pred cccccCCCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 288 DREDDQRRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 288 ~~~~~~~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.......|||..|...+++..+. .-+..+++..-+.+.-.++|.-+..
T Consensus 285 --FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtr 336 (406)
T COG1222 285 --FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTR 336 (406)
T ss_pred --CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhh
Confidence 01234578999998887753221 1235777776677777778876665
No 152
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.30 E-value=0.00012 Score=77.85 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=29.1
Q ss_pred cccccceeccCCCCcccc----cCCCCCcCEeecCCCcCccccccc-ccCCCCcCEEecccc
Q 036977 592 EVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGN-IIELPELRYLTIENC 648 (693)
Q Consensus 592 ~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~-i~~L~~L~~L~i~~C 648 (693)
.|..|+.|+++.|.|..+ +...++|+.|+|++ +++..||++ +.-|..|++|+++..
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhccccc
Confidence 344555555555554444 44455555555555 555555443 334555555555543
No 153
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.29 E-value=0.011 Score=68.71 Aligned_cols=167 Identities=20% Similarity=0.180 Sum_probs=92.1
Q ss_pred ccccchHHHHHHHHHHHhc------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKD------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLA 231 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 231 (693)
...+|.++.+++|++++.. .+..++.++|++|+||||+|+.++...... | +-++++...+..++...--
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--Y---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEEcCCCCCHHHhccchh
Confidence 4578999999999988852 245689999999999999999999876532 2 2233443333332211111
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCc------cccCCCCCC-----c-ccccc-cccCCCeEE
Q 036977 232 SDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLEL------DAVGIPSGD-----V-DEKDR-EDDQRRCTI 298 (693)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~------~~l~~~~~~-----~-~~~~~-~~~~~~~~I 298 (693)
...|.. .......+.+. .. .+-+++||+++....- ..+...+.. + +..+. .....+..+
T Consensus 397 ~~~g~~------~G~~~~~l~~~-~~-~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 397 TYIGSM------PGKLIQKMAKV-GV-KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred ccCCCC------CcHHHHHHHhc-CC-CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 111111 11122222221 11 3457899999755211 111000000 0 00000 002245556
Q ss_pred EEecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 299 ILTSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 299 ivTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
|.|+.+..+.........++.+.+++.++-.++..++..
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 667765544333334456899999999999999888775
No 154
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.29 E-value=0.00025 Score=49.45 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=33.1
Q ss_pred CCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc
Q 036977 614 SWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 614 ~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
++|++|++++ +.++.+|..+.+|++|++|++++| ++..+|.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4788999998 679999988999999999999999 5777765
No 155
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.011 Score=64.19 Aligned_cols=89 Identities=20% Similarity=0.309 Sum_probs=51.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLK 256 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (693)
..++++|+|.+|+||||++..++.....+.....+..++.... .....-++...+.++.......+...+...+. .+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~-~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE-RLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH-Hhc
Confidence 3579999999999999999999887654422344556655322 12223333444445544433233344443333 333
Q ss_pred cCCcEEEEEeCCC
Q 036977 257 QEKRVLIILDNIW 269 (693)
Q Consensus 257 ~~k~~LlVlDdv~ 269 (693)
+.-+|++|..-
T Consensus 428 --~~DLVLIDTaG 438 (559)
T PRK12727 428 --DYKLVLIDTAG 438 (559)
T ss_pred --cCCEEEecCCC
Confidence 34588888864
No 156
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.27 E-value=0.0017 Score=60.21 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCC------------------CCEEEEEEecCC--
Q 036977 162 SRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKL------------------IDKVVMAEVTQN-- 220 (693)
Q Consensus 162 gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------F~~~~wv~vs~~-- 220 (693)
|.++..+.+.+.+..++. ..+.++|+.|+||+++|..+++..-.... .....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 567778888888877765 46799999999999999999887543221 223444433332
Q ss_pred -CChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cCccccCCCCCCcccccccccCCCeE
Q 036977 221 -PDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK--LELDAVGIPSGDVDEKDREDDQRRCT 297 (693)
Q Consensus 221 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~ 297 (693)
...+++ +++...+...... +++-++|+||++.. ...+.+.-.+.. ...++.
T Consensus 81 ~i~i~~i-r~i~~~~~~~~~~-----------------~~~KviiI~~ad~l~~~a~NaLLK~LEe--------pp~~~~ 134 (162)
T PF13177_consen 81 SIKIDQI-REIIEFLSLSPSE-----------------GKYKVIIIDEADKLTEEAQNALLKTLEE--------PPENTY 134 (162)
T ss_dssp SBSHHHH-HHHHHHCTSS-TT-----------------SSSEEEEEETGGGS-HHHHHHHHHHHHS--------TTTTEE
T ss_pred hhhHHHH-HHHHHHHHHHHhc-----------------CCceEEEeehHhhhhHHHHHHHHHHhcC--------CCCCEE
Confidence 333333 3555555433322 25679999999865 233333222222 345788
Q ss_pred EEEecCChhh-hhhhcCCCcEEEcCCCC
Q 036977 298 IILTSRSRDL-LCIDMNSQKIFWIDALS 324 (693)
Q Consensus 298 IivTtR~~~v-~~~~~~~~~~~~l~~L~ 324 (693)
+|++|++..- .......-..+.+.+++
T Consensus 135 fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 135 FILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEEECChHHChHHHHhhceEEecCCCC
Confidence 8888887763 33333344466666553
No 157
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.0055 Score=63.61 Aligned_cols=152 Identities=14% Similarity=0.100 Sum_probs=84.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccC--------------------CCCEEEEEEec---CCCChHHHHHHHHHHhC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDK--------------------LIDKVVMAEVT---QNPDPQKIQDKLASDLG 235 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs---~~~~~~~~~~~i~~~l~ 235 (693)
...+.++|+.|+||||+|+.+++..--.+ |.| ..|+.-. +...++++ +++.+.+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~id~i-R~l~~~~~ 99 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKVDQV-RELVSFVV 99 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCHHHH-HHHHHHHh
Confidence 45688999999999999999988864321 112 2222111 11122221 22222222
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCChh-hhhhhc
Q 036977 236 MKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD-LLCIDM 312 (693)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~-v~~~~~ 312 (693)
.... .+++-++|+|+++... ..+.+...+.. -..++.+|++|.+.. +.....
T Consensus 100 ~~~~-----------------~~~~kv~iI~~a~~m~~~aaNaLLK~LEE--------Pp~~~~fiL~t~~~~~ll~TI~ 154 (328)
T PRK05707 100 QTAQ-----------------LGGRKVVLIEPAEAMNRNAANALLKSLEE--------PSGDTVLLLISHQPSRLLPTIK 154 (328)
T ss_pred hccc-----------------cCCCeEEEECChhhCCHHHHHHHHHHHhC--------CCCCeEEEEEECChhhCcHHHH
Confidence 1111 1244566789998652 33333222221 234566777776664 333323
Q ss_pred CCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 313 NSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 313 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
..-..+.+.+++.+++.+.+....... ..+.+..++..++|-|+.
T Consensus 155 SRc~~~~~~~~~~~~~~~~L~~~~~~~--------------------~~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 155 SRCQQQACPLPSNEESLQWLQQALPES--------------------DERERIELLTLAGGSPLR 199 (328)
T ss_pred hhceeeeCCCcCHHHHHHHHHHhcccC--------------------ChHHHHHHHHHcCCCHHH
Confidence 344589999999999988887653111 123345678889999973
No 158
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.0035 Score=65.38 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=84.3
Q ss_pred ccc-hHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccC--------------------CCCEEEEEEe
Q 036977 160 FDS-RMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDK--------------------LIDKVVMAEV 217 (693)
Q Consensus 160 ~~g-R~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v 217 (693)
++| .+..++.+...+..++. ....++|+.|+||||+|+.+.+..-..+ |.|..+...-
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 455 77788888888876665 5669999999999999999988754221 2222211111
Q ss_pred cCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCC
Q 036977 218 TQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRR 295 (693)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~ 295 (693)
+....+++ .+++.+.+.... ..+.+-++|+|+++... ..+.+...+.. ...+
T Consensus 87 ~~~i~id~-ir~l~~~~~~~~-----------------~~~~~kvviI~~a~~~~~~a~NaLLK~LEE--------Pp~~ 140 (329)
T PRK08058 87 GQSIKKDQ-IRYLKEEFSKSG-----------------VESNKKVYIIEHADKMTASAANSLLKFLEE--------PSGG 140 (329)
T ss_pred cccCCHHH-HHHHHHHHhhCC-----------------cccCceEEEeehHhhhCHHHHHHHHHHhcC--------CCCC
Confidence 11111111 112222221111 01255689999987553 23333222222 3346
Q ss_pred eEEEEecCChh-hhhhhcCCCcEEEcCCCCHHHHHHHHHH
Q 036977 296 CTIILTSRSRD-LLCIDMNSQKIFWIDALSKEEALHLAKL 334 (693)
Q Consensus 296 ~~IivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 334 (693)
+.+|++|.+.. +..........+++.+++.++..+.+..
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 66666665543 3333233456899999999998777754
No 159
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.20 E-value=0.014 Score=62.86 Aligned_cols=88 Identities=25% Similarity=0.284 Sum_probs=55.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCCCCCC---CCHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMKFDLN---DSIHHRASRLRE 253 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 253 (693)
++.+|.++|.+|+||||.+..++.....++ ..+..+++... ....+-++.+.++++.+.... .+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG--LKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467999999999999999999998877542 24555555432 223445666777777654321 233333333344
Q ss_pred HHhcCCcEEEEEeCCC
Q 036977 254 RLKQEKRVLIILDNIW 269 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~ 269 (693)
.... . -++|+|..-
T Consensus 172 ~~~~-~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKK-A-DVIIVDTAG 185 (437)
T ss_pred Hhhc-C-CEEEEECCC
Confidence 4444 3 578999864
No 160
>PHA00729 NTP-binding motif containing protein
Probab=97.20 E-value=0.0017 Score=62.60 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=29.4
Q ss_pred HHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 169 DVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+++.+...+...|.|+|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455556566667899999999999999999998753
No 161
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.19 E-value=0.0017 Score=72.69 Aligned_cols=53 Identities=23% Similarity=0.297 Sum_probs=44.2
Q ss_pred CCCCCCccccchHHHHHHHHHHHhcC-----CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 152 NDGKDNEAFDSRMKVFQDVMEALKDD-----KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..|.....++|.++.++.+..++... ..+++.|+|++|+||||+++.++....
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35566788999999999999998642 346799999999999999999998764
No 162
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.17 E-value=0.0036 Score=64.94 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=67.1
Q ss_pred HHHHHHHhc-CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCE-EEEEEecCC-CChHHHHHHHHHHhCCCCCCCCCH
Q 036977 168 QDVMEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDK-VVMAEVTQN-PDPQKIQDKLASDLGMKFDLNDSI 244 (693)
Q Consensus 168 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~ 244 (693)
.++++.+.. ++-+-+.|+|.+|+|||||++.+++....+ +-+. ++|+.+.+. ..+.++.+.+...+.....+....
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 346666642 334567999999999999999999987654 3344 477777765 457888888888776544321111
Q ss_pred HH-----HH-HHHHHHHhcCCcEEEEEeCCCCc
Q 036977 245 HH-----RA-SRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 245 ~~-----~~-~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
.. .. .....+-..+++.+||+|++...
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 11 11 22333333468999999998644
No 163
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.14 E-value=0.0011 Score=63.18 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEec----CCCC--h-------HHHHH
Q 036977 162 SRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVT----QNPD--P-------QKIQD 228 (693)
Q Consensus 162 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~~--~-------~~~~~ 228 (693)
.+..+....++.|. ...++.+.|++|.|||.||.+.+-+.-..+.|+.++++.-. +... + .....
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 34555666667666 45799999999999999999998877666788888876321 1110 0 11122
Q ss_pred HHHHHhCCCCCCCCCHHHHHHH------HHHHHhc--CCcEEEEEeCCCCc--cCccccCCCCCCcccccccccCCCeEE
Q 036977 229 KLASDLGMKFDLNDSIHHRASR------LRERLKQ--EKRVLIILDNIWTK--LELDAVGIPSGDVDEKDREDDQRRCTI 298 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~------l~~~L~~--~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~I 298 (693)
-+.+.+..-... ...+..... -..++++ -+..++|+|++++. .++..+... .+.+|||
T Consensus 82 p~~d~l~~~~~~-~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR-----------~g~~ski 149 (205)
T PF02562_consen 82 PIYDALEELFGK-EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR-----------IGEGSKI 149 (205)
T ss_dssp HHHHHHTTTS-T-TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT-----------B-TT-EE
T ss_pred HHHHHHHHHhCh-HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc-----------cCCCcEE
Confidence 222222221111 111211110 0011111 13579999999876 356665443 5679999
Q ss_pred EEecCChhh
Q 036977 299 ILTSRSRDL 307 (693)
Q Consensus 299 ivTtR~~~v 307 (693)
|++--...+
T Consensus 150 i~~GD~~Q~ 158 (205)
T PF02562_consen 150 IITGDPSQI 158 (205)
T ss_dssp EEEE-----
T ss_pred EEecCceee
Confidence 998765543
No 164
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.14 E-value=0.001 Score=64.92 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=28.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEe
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEV 217 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 217 (693)
.++|+|..|+|||||+..+....... |..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence 57899999999999999999886654 877776644
No 165
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0085 Score=67.79 Aligned_cols=105 Identities=19% Similarity=0.315 Sum_probs=68.7
Q ss_pred ccccchHHHHHHHHHHHhc---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKD---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQD 228 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 228 (693)
..++|.+..+..+.+.+.. .+.++...+|+.|||||-||+.++...-... +..+-++.|+-....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~EkH---- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEKH---- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHHH----
Confidence 3568999999999988852 2457888899999999999999998863321 344555555432222
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcE-EEEEeCCCCc
Q 036977 229 KLASDLGMKFDLNDSIHHRASRLRERLKQEKRV-LIILDNIWTK 271 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~-LlVlDdv~~~ 271 (693)
.+-+-+|.++.. ...++ ...|.+..++ ++| +|+||++...
T Consensus 565 sVSrLIGaPPGY-VGyee-GG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 565 SVSRLIGAPPGY-VGYEE-GGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHhCCCCCC-ceecc-ccchhHhhhc-CCCeEEEechhhhc
Confidence 223334554443 22222 4566777777 656 8889999855
No 166
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.013 Score=64.36 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=92.6
Q ss_pred CccccchHHHHHHHHHHHh------cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHH
Q 036977 157 NEAFDSRMKVFQDVMEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKL 230 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 230 (693)
.++-+|.++..++|++.+. +-+.++++.+|++|||||.+|+.|+.....+ | +-++|+.-.+..++-.--
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccc
Confidence 4566899999999999984 2356899999999999999999999987654 3 234555555544431111
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC---------ccccCCCCCC--cccccccccCCCeEEE
Q 036977 231 ASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE---------LDAVGIPSGD--VDEKDREDDQRRCTII 299 (693)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~---------~~~l~~~~~~--~~~~~~~~~~~~~~Ii 299 (693)
-..+| .-+...++.|+..= . .+=|+.+|+|+..-. +-++..|-.+ |.+.+-+..-.=|+|+
T Consensus 485 RTYVG------AMPGkiIq~LK~v~-t-~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 485 RTYVG------AMPGKIIQCLKKVK-T-ENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred eeeec------cCChHHHHHHHhhC-C-CCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 11111 11122333333221 2 457899999885420 1111111100 1111111111224444
Q ss_pred EecCChhhh---hhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 300 LTSRSRDLL---CIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 300 vTtR~~~v~---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
+..--..+. ......-.++++.+...+|-..+-.++..
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 332222221 11223346899999999998888877765
No 167
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.11 E-value=8.6e-05 Score=82.99 Aligned_cols=96 Identities=19% Similarity=0.369 Sum_probs=57.9
Q ss_pred hhcCCCCCCEEEecCCC-------CCccccccceeccCCCCcccc---cCCCCCcCEeecCCCcCcccccccccCCCCcC
Q 036977 572 LLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIGPL---FPRLSWLRLIDLPKLKRFYNFTGNIIELPELR 641 (693)
Q Consensus 572 ~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~~---~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~ 641 (693)
.+.++.+||+|++++.. .+.+++.|++|++++|.+..+ +.++..|++|...+ +.+..+| .+..++.|+
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLK 455 (1081)
T ss_pred hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcce
Confidence 45567777777776652 123566677777777665555 66666666666665 5566666 566666666
Q ss_pred EEecccccccccc--cc-cc-cccceeeccccc
Q 036977 642 YLTIENCPDMETF--IS-NS-TSVLHMTADNKE 670 (693)
Q Consensus 642 ~L~i~~C~~L~~l--p~-~~-~~l~~l~~~~~~ 670 (693)
.+|++ |-+|... |. .+ .+|+.|..+|..
T Consensus 456 ~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 456 VLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred EEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence 66666 4455443 32 22 456666655544
No 168
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.11 E-value=0.0028 Score=62.90 Aligned_cols=92 Identities=22% Similarity=0.262 Sum_probs=59.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCC----CCEEEEEEecCCCChHHHHHHHHHHhCCCCCC---------CCCH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKL----IDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL---------NDSI 244 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 244 (693)
.-.++.|+|.+|+|||+|+.+++........ ...++|++....++...+ .++++..+..... ..+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 3479999999999999999999866432211 257999998887765544 3444444332111 1222
Q ss_pred ---HHHHHHHHHHHhcC-CcEEEEEeCCCC
Q 036977 245 ---HHRASRLRERLKQE-KRVLIILDNIWT 270 (693)
Q Consensus 245 ---~~~~~~l~~~L~~~-k~~LlVlDdv~~ 270 (693)
......+.+.+... +.-++|+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 23345556666655 677999999764
No 169
>PRK07261 topology modulation protein; Provisional
Probab=97.08 E-value=0.0018 Score=60.66 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=25.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhcc-CCCCEEEE
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVMED-KLIDKVVM 214 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 214 (693)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48899999999999999998775432 23444555
No 170
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.015 Score=60.00 Aligned_cols=175 Identities=11% Similarity=0.075 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCC-ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCC------C
Q 036977 165 KVFQDVMEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGM------K 237 (693)
Q Consensus 165 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~------~ 237 (693)
...+.+...+..++ .....++|+.|+||+++|+.+++..--.+.... ...+.-...+.+...-.. +
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 34556667776655 467779999999999999999887643211100 000000000011000000 0
Q ss_pred -CCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCCh-hhhh
Q 036977 238 -FDLNDSIHHRASRLRERLK----QEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSR-DLLC 309 (693)
Q Consensus 238 -~~~~~~~~~~~~~l~~~L~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~-~v~~ 309 (693)
.......++ +..+.+.+. .+++-++|+|+++... ..+.+...+.. -..++.+|++|.+. .+..
T Consensus 82 ~~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE--------Pp~~~~fiL~t~~~~~llp 152 (325)
T PRK06871 82 IDNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE--------PRPNTYFLLQADLSAALLP 152 (325)
T ss_pred ccCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC--------CCCCeEEEEEECChHhCch
Confidence 000011111 122222222 2356788899998653 23333222222 33456666666655 4433
Q ss_pred hhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 310 IDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 310 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
.....-..+.+.+++.++..+.+....... ...+...+..++|-|+
T Consensus 153 TI~SRC~~~~~~~~~~~~~~~~L~~~~~~~---------------------~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 153 TIYSRCQTWLIHPPEEQQALDWLQAQSSAE---------------------ISEILTALRINYGRPL 198 (325)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHhccC---------------------hHHHHHHHHHcCCCHH
Confidence 323334589999999999988887653211 1124556778888886
No 171
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.077 Score=52.39 Aligned_cols=159 Identities=16% Similarity=0.084 Sum_probs=87.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQE 258 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (693)
-+-|.++|++|.||+.||++|+.+.... |++||.. ++... .+ ...+.++..|.+.-+..
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSS----DLvSK---Wm-------GESEkLVknLFemARe~ 224 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSS----DLVSK---WM-------GESEKLVKNLFEMAREN 224 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehH----HHHHH---Hh-------ccHHHHHHHHHHHHHhc
Confidence 4678999999999999999999886522 2344432 11111 11 22355677777777777
Q ss_pred CcEEEEEeCCCCccC---------ccccCCCCCCcccccccc--cCCCeEEEEecCChhhhhhhcC--CCcEEEcCCCCH
Q 036977 259 KRVLIILDNIWTKLE---------LDAVGIPSGDVDEKDRED--DQRRCTIILTSRSRDLLCIDMN--SQKIFWIDALSK 325 (693)
Q Consensus 259 k~~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~--~~~~~~IivTtR~~~v~~~~~~--~~~~~~l~~L~~ 325 (693)
++-+|.+|+++.... -..++.-|. ...+.. ...|.-|+-.|...-++...+. ....+.+.--+.
T Consensus 225 kPSIIFiDEiDslcg~r~enEseasRRIKTEfL---VQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~ 301 (439)
T KOG0739|consen 225 KPSIIFIDEIDSLCGSRSENESEASRRIKTEFL---VQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEA 301 (439)
T ss_pred CCcEEEeehhhhhccCCCCCchHHHHHHHHHHH---HhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcH
Confidence 999999999985421 111111000 000000 3455556666666655432221 223444433333
Q ss_pred HHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 326 EEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 326 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
.....+|.-+.+.. +.....+..++++++..|..-+
T Consensus 302 ~AR~~MF~lhlG~t----------------p~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 302 HARARMFKLHLGDT----------------PHVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred HHhhhhheeccCCC----------------ccccchhhHHHHHhhcCCCCcC
Confidence 33445555555433 3333455667778888886654
No 172
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.07 E-value=0.0025 Score=62.05 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=55.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHh-C---CC--CCCCCCH---HHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDL-G---MK--FDLNDSI---HHRAS 249 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l-~---~~--~~~~~~~---~~~~~ 249 (693)
-.++.|+|.+|+|||+++.+++...... ...++|++... ++...+.+. +... . .. .....+. .....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 4799999999999999999988876543 46799999976 666554443 3221 0 00 0001222 22345
Q ss_pred HHHHHHhcCCcEEEEEeCCCC
Q 036977 250 RLRERLKQEKRVLIILDNIWT 270 (693)
Q Consensus 250 ~l~~~L~~~k~~LlVlDdv~~ 270 (693)
.+.+.+...+.-++|+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHH
Confidence 555555544566899998754
No 173
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.07 E-value=0.0058 Score=58.48 Aligned_cols=89 Identities=21% Similarity=0.277 Sum_probs=58.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMKFDL---NDSIHHRASRLRER 254 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 254 (693)
++++.++|+.|+||||.+..++.....+ -..+..++.... ....+-++..++.++.+... ..+..+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4789999999999999999998887765 445777776533 34566678888888876432 23444444444444
Q ss_pred HhcCCcEEEEEeCCC
Q 036977 255 LKQEKRVLIILDNIW 269 (693)
Q Consensus 255 L~~~k~~LlVlDdv~ 269 (693)
....+.=++++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 443233588888753
No 174
>PRK12377 putative replication protein; Provisional
Probab=97.07 E-value=0.0026 Score=63.07 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=48.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
+...+.++|.+|+|||.||.++++....+ ...++++++. +++..+-...... ... ..+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~----~~~----~~~l~~l~- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG----QSG----EKFLQELC- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc----chH----HHHHHHhc-
Confidence 34678999999999999999999998754 3345666554 3444443333111 111 12344443
Q ss_pred CCcEEEEEeCCCC
Q 036977 258 EKRVLIILDNIWT 270 (693)
Q Consensus 258 ~k~~LlVlDdv~~ 270 (693)
+.-|||+||+..
T Consensus 163 -~~dLLiIDDlg~ 174 (248)
T PRK12377 163 -KVDLLVLDEIGI 174 (248)
T ss_pred -CCCEEEEcCCCC
Confidence 457999999953
No 175
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.04 E-value=0.026 Score=59.33 Aligned_cols=157 Identities=22% Similarity=0.280 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHH-HHHHHHhhccCCCCEEEEEEecCC---CChHHHHHHHHHHhCC--
Q 036977 163 RMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLV-KQVAKKVMEDKLIDKVVMAEVTQN---PDPQKIQDKLASDLGM-- 236 (693)
Q Consensus 163 R~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~~-- 236 (693)
|.+.+++|..||.+..-..|.|.|+-|+||+.|+ .++.++. ..+..+++.+- .+-..++..++.++|-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5678899999999888899999999999999999 6666552 33777776532 3445555555555542
Q ss_pred ----------------------CCCCCCCHHHHHHHHHH----HHhc-------------------------CCcEEEEE
Q 036977 237 ----------------------KFDLNDSIHHRASRLRE----RLKQ-------------------------EKRVLIIL 265 (693)
Q Consensus 237 ----------------------~~~~~~~~~~~~~~l~~----~L~~-------------------------~k~~LlVl 265 (693)
+..-.++.+.....+.. .|++ +.+=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 11112333322211111 1111 23568999
Q ss_pred eCCCCcc-----------CccccCCCCCCcccccccccCCCeEEEEecCChhhhh---hhc--CCCcEEEcCCCCHHHHH
Q 036977 266 DNIWTKL-----------ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLC---IDM--NSQKIFWIDALSKEEAL 329 (693)
Q Consensus 266 Ddv~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~---~~~--~~~~~~~l~~L~~~ea~ 329 (693)
||..... +|..... ..+-..||++|-+..... ..+ ...+.+.|...+++.|.
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv------------~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak 222 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV------------QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAK 222 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH------------hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHH
Confidence 9976442 2333211 344567888887765532 122 23468899999999999
Q ss_pred HHHHHhhh
Q 036977 330 HLAKLQHL 337 (693)
Q Consensus 330 ~Lf~~~~~ 337 (693)
++......
T Consensus 223 ~yV~~~L~ 230 (431)
T PF10443_consen 223 QYVLSQLD 230 (431)
T ss_pred HHHHHHhc
Confidence 99988875
No 176
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.03 E-value=0.0071 Score=70.49 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=38.9
Q ss_pred CCccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 156 DNEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
....+.|.++.++.+.+.+.- ...+-+.++|++|+|||+||+.+++...
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 345578999999988877631 2346788999999999999999998764
No 177
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.02 E-value=0.0022 Score=65.69 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=61.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLR 252 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 252 (693)
.-+++-|+|++|+||||||.+++...... -..++|++..+.++.. .+++++...+. +...++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34799999999999999999988776543 3567899887766553 35555543221 345566666666
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 036977 253 ERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 253 ~~L~~~k~~LlVlDdv~~~ 271 (693)
..++.+..-++|+|.+...
T Consensus 127 ~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHhhccCCcEEEEcchhhh
Confidence 6666556779999998644
No 178
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.063 Score=55.95 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=58.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC-ChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP-DPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLK 256 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (693)
+.++++++|+.|+||||++..++.....+ -..+.+++..... ....-++...+.++.+.....+..+....+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 45799999999999999999999876544 2456777775432 23444566677777655433455555444433321
Q ss_pred cCCcEEEEEeCCCC
Q 036977 257 QEKRVLIILDNIWT 270 (693)
Q Consensus 257 ~~k~~LlVlDdv~~ 270 (693)
....-++++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 11346888887643
No 179
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.98 E-value=0.0093 Score=57.95 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=42.7
Q ss_pred CCCCccccchHHHHHHHHHHH----hcCCceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 154 GKDNEAFDSRMKVFQDVMEAL----KDDKLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
+.+...++|-+..++.|++.. ...+..-+.++|..|+|||++++++.+....+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 355677899888888887654 34456778899999999999999999987765
No 180
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.98 E-value=0.0091 Score=59.88 Aligned_cols=176 Identities=18% Similarity=0.161 Sum_probs=101.7
Q ss_pred CccccchHHHHHHHHHHHhc----CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh-HHHHHHHH
Q 036977 157 NEAFDSRMKVFQDVMEALKD----DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP-QKIQDKLA 231 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~ 231 (693)
...++|-.++...+-.++.. +...-+.|+|+.|+|||+|...+..+.+. .-+..+-|.+...... .-.++.|.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~--~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE--NGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh--cCCeEEEEEECccchhhHHHHHHHH
Confidence 34567888888888777752 45567889999999999999988888322 2234555556554332 22444555
Q ss_pred HHhC----CCCCCCCCHHHHHHHHHHHHhc-----CCcEEEEEeCCCCccCc-cccCCCCCCcccccccccCCCeEEEEe
Q 036977 232 SDLG----MKFDLNDSIHHRASRLRERLKQ-----EKRVLIILDNIWTKLEL-DAVGIPSGDVDEKDREDDQRRCTIILT 301 (693)
Q Consensus 232 ~~l~----~~~~~~~~~~~~~~~l~~~L~~-----~k~~LlVlDdv~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~IivT 301 (693)
+++. .......+..+....+...|+. +-++++|+|+++-...- .+. -+-++++.-+....+-|-|-+|
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQt--llYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQT--LLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhH--HHHHHHHHHhhcCCCeEEEEee
Confidence 5442 2221122233334445555543 23478888887644211 000 0111222223336778989999
Q ss_pred cCChhhh------hhhcCCCcEEEcCCCCHHHHHHHHHHhh
Q 036977 302 SRSRDLL------CIDMNSQKIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 302 tR~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
||-...- ......-.++-+..+.-++..+++.+..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9987542 1122233366677788888888888776
No 181
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.98 E-value=0.0086 Score=69.81 Aligned_cols=160 Identities=17% Similarity=0.179 Sum_probs=87.6
Q ss_pred CccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 157 NEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
...+.|.+..++.+.+.+.- ...+-+.++|++|+|||++|+++++..... | +.++.
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~---- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRG---- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh----
Confidence 34567877777777665521 134568899999999999999999986532 2 22221
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcccc--CCCC-CC-cccccccc----cCCC
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAV--GIPS-GD-VDEKDRED----DQRR 295 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l--~~~~-~~-~~~~~~~~----~~~~ 295 (693)
.++... .+ ...+.....+...-+...+++|++|+++....-..- .... .. +.+++... ...+
T Consensus 521 ~~l~~~---~v-------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 521 PEILSK---WV-------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred HHHhhc---cc-------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 111110 01 112223344444444446799999999754210000 0000 00 00011100 2235
Q ss_pred eEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 296 CTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 296 ~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
..||.||.......... ..+..+.+...+.++..++|..+..
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~ 636 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR 636 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc
Confidence 56777776665442222 2346888999999999999976553
No 182
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.98 E-value=0.0024 Score=65.48 Aligned_cols=86 Identities=23% Similarity=0.283 Sum_probs=60.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLRE 253 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 253 (693)
-+++-|+|++|+||||||.+++...... -..++|++..+.++.. .+++++.+.+. +.+.++....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4789999999999999999988776543 4568899887766643 34555543211 3455666666666
Q ss_pred HHhcCCcEEEEEeCCCCc
Q 036977 254 RLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~~~ 271 (693)
.++.+..-++|+|.|-..
T Consensus 128 li~s~~~~lIVIDSvaal 145 (325)
T cd00983 128 LVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHhccCCCEEEEcchHhh
Confidence 666656779999997643
No 183
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.026 Score=58.16 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccC-----------------CCCEEEEEEecCCCChH
Q 036977 163 RMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDK-----------------LIDKVVMAEVTQNPDPQ 224 (693)
Q Consensus 163 R~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~F~~~~wv~vs~~~~~~ 224 (693)
-+...+.+...+..++. ..+.++|+.|+||+++|..+++..-..+ |-| ..|+.......
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~-- 85 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT-- 85 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc--
Confidence 34556677777766665 4688999999999999999887754321 111 22221000000
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEE
Q 036977 225 KIQDKLASDLGMKFDLNDSIHHRASRLRERLK----QEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTI 298 (693)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~I 298 (693)
+.+.......+ .+..+.+.+. .+++-++|+|+++... .-+.+...+.. -..++.+
T Consensus 86 ----------~~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE--------Pp~~~~f 146 (319)
T PRK08769 86 ----------GDKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE--------PSPGRYL 146 (319)
T ss_pred ----------cccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC--------CCCCCeE
Confidence 00000001111 1222222222 1356799999998653 22222212211 2335656
Q ss_pred EEecCCh-hhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 299 ILTSRSR-DLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 299 ivTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
|++|.+. .+..+....-..+.+.+++.+++.+.+...- . . ...+..++..++|-|+.
T Consensus 147 iL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~--~-----------------~---~~~a~~~~~l~~G~p~~ 204 (319)
T PRK08769 147 WLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG--V-----------------S---ERAAQEALDAARGHPGL 204 (319)
T ss_pred EEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC--C-----------------C---hHHHHHHHHHcCCCHHH
Confidence 6666554 4433333344588999999999888776531 1 0 12356778999999974
No 184
>PRK09354 recA recombinase A; Provisional
Probab=96.96 E-value=0.0029 Score=65.42 Aligned_cols=86 Identities=21% Similarity=0.276 Sum_probs=62.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLRE 253 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 253 (693)
-+++-|+|++|+||||||.+++...... -..++|++.-+.++. ..++++|.+.+. +.+.++....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4789999999999999999988876644 467899998877765 345556554221 3456666666666
Q ss_pred HHhcCCcEEEEEeCCCCc
Q 036977 254 RLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~~~ 271 (693)
.++.+..-+||+|.|-..
T Consensus 133 li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HhhcCCCCEEEEeChhhh
Confidence 666656779999998644
No 185
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.96 E-value=0.00012 Score=77.61 Aligned_cols=101 Identities=20% Similarity=0.280 Sum_probs=74.5
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCC------ccccccceeccCCCCcccccCCCC--CcCEeecC
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSL------EEVLHLEELNAKEEHIGPLFPRLS--WLRLIDLP 622 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l------~~l~~L~~L~l~~~~l~~~~~~L~--~L~~L~L~ 622 (693)
--|+.|-+.+. ++. ..|..++.+..|..|+.+.|... .++.+|+.|.+..|.+..+...|. .|..||++
T Consensus 143 lpLkvli~sNN-kl~--~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfS 219 (722)
T KOG0532|consen 143 LPLKVLIVSNN-KLT--SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFS 219 (722)
T ss_pred CcceeEEEecC-ccc--cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecc
Confidence 35788877763 344 45777888999999999877532 256667777777777766644333 46678888
Q ss_pred CCcCcccccccccCCCCcCEEecccccccccccc
Q 036977 623 KLKRFYNFTGNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 623 ~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
|+++..||-.+.+|+.||+|.+.+.| |++=|.
T Consensus 220 -cNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPA 251 (722)
T KOG0532|consen 220 -CNKISYLPVDFRKMRHLQVLQLENNP-LQSPPA 251 (722)
T ss_pred -cCceeecchhhhhhhhheeeeeccCC-CCCChH
Confidence 79999999999999999999999876 777443
No 186
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.96 E-value=0.0049 Score=60.75 Aligned_cols=92 Identities=22% Similarity=0.261 Sum_probs=58.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccC----CCCEEEEEEecCCCChHHHHHHHHHHhCCCCC---------CCCCHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDK----LIDKVVMAEVTQNPDPQKIQDKLASDLGMKFD---------LNDSIH 245 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 245 (693)
-.++.|+|.+|+|||+|+..++....... .-..++|++....++...+. .+....+.... ...+.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHH
Confidence 47999999999999999999987754321 11568999988777665543 33343322111 123445
Q ss_pred HHHHHHHHHHh---cCCcEEEEEeCCCCc
Q 036977 246 HRASRLRERLK---QEKRVLIILDNIWTK 271 (693)
Q Consensus 246 ~~~~~l~~~L~---~~k~~LlVlDdv~~~ 271 (693)
+....+.+... ..+.-++|+|.+...
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence 55555555443 445569999998643
No 187
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.95 E-value=0.0062 Score=70.79 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=62.1
Q ss_pred ccccchHHHHHHHHHHHhc------C---CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKD------D---KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQD 228 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 228 (693)
..++|.+..++.+...+.. + ...++.++|++|+|||+||+.+++... ...+.++.++-....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----
Confidence 4567888888888877752 1 235688999999999999999998762 334556655432211
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 229 KLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
.+.+.+|.+... ...+ ....+.+.++.....+++||+++..
T Consensus 525 ~~~~lig~~~gy-vg~~-~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 TVSRLIGAPPGY-VGFE-QGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred cHHHHhcCCCCC-cccc-hhhHHHHHHHhCCCeEEEEechhhc
Confidence 112223332221 1111 1223445555434569999999855
No 188
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.94 E-value=0.012 Score=56.73 Aligned_cols=155 Identities=16% Similarity=0.200 Sum_probs=91.2
Q ss_pred CccccchHHHHH---HHHHHHhcC------CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHH
Q 036977 157 NEAFDSRMKVFQ---DVMEALKDD------KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQ 227 (693)
Q Consensus 157 ~~~~~gR~~~~~---~l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 227 (693)
.++++|.++... -|++.|.+. .++-|..+|++|.|||.+|+++++..++- | +.+. ..
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk-------at 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK-------AT 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec-------hH
Confidence 456788877665 366666543 57889999999999999999999987753 2 1111 11
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc----------C----ccccCCCCCCcccccccccC
Q 036977 228 DKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL----------E----LDAVGIPSGDVDEKDREDDQ 293 (693)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~----------~----~~~l~~~~~~~~~~~~~~~~ 293 (693)
+-|-+.+| +....+.++.+.-+..-+|++.+|+++-.. + .+.+..-+. +...+
T Consensus 186 ~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD------gi~en 252 (368)
T COG1223 186 ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD------GIKEN 252 (368)
T ss_pred HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc------CcccC
Confidence 22222221 223344445544444578999999987431 1 111111111 11134
Q ss_pred CCeEEEEecCChhhhhhhcC--CCcEEEcCCCCHHHHHHHHHHhhhh
Q 036977 294 RRCTIILTSRSRDLLCIDMN--SQKIFWIDALSKEEALHLAKLQHLE 338 (693)
Q Consensus 294 ~~~~IivTtR~~~v~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~ 338 (693)
.|..-|..|.....+..... ....++..--+.+|..+++..++..
T Consensus 253 eGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 253 EGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred CceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 56556666666665432222 2346666667889999999888753
No 189
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.92 E-value=0.00073 Score=70.47 Aligned_cols=119 Identities=20% Similarity=0.242 Sum_probs=82.9
Q ss_pred cCcceeeecCCCCCCc--CCCchhhcCC-CCCCEEEecCCCCC-----------ccccccceeccCCCCccc-----c--
Q 036977 551 NNLRELVVDDCTNMSS--AIPANLLRCL-NNLRYLEVRNCDSL-----------EEVLHLEELNAKEEHIGP-----L-- 609 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~--~~~~~~l~~L-~~L~~L~l~~c~~l-----------~~l~~L~~L~l~~~~l~~-----~-- 609 (693)
++|+.|.+.+|.-... ......+..+ ++|+.|++++|.-- ..+++|++|+++++.+.. +
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 3599999998753210 0123355667 89999999998632 144679999999987762 1
Q ss_pred -cCCCCCcCEeecCCCcCcc-----cccccccCCCCcCEEeccccccccc-----c----cccccccceeecccccc
Q 036977 610 -FPRLSWLRLIDLPKLKRFY-----NFTGNIIELPELRYLTIENCPDMET-----F----ISNSTSVLHMTADNKEA 671 (693)
Q Consensus 610 -~~~L~~L~~L~L~~c~~l~-----~LP~~i~~L~~L~~L~i~~C~~L~~-----l----p~~~~~l~~l~~~~~~~ 671 (693)
+..+++|+.|++++|. +. .++..+..+++|++|++++|+ +.. + +....+|++|.+.+|.-
T Consensus 188 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 188 GLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 4556799999999974 32 345566688999999999985 442 2 22236789999988853
No 190
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.011 Score=64.84 Aligned_cols=140 Identities=20% Similarity=0.107 Sum_probs=78.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC--ChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP--DPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLK 256 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (693)
.+-|.|.|+.|+|||+||+++++... +++.-.+.+++++.-. ..+.+++.+ .....+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHHh
Confidence 46788999999999999999999988 4445567777776432 233332222 122233333
Q ss_pred cCCcEEEEEeCCCCcc--------CccccCCCCCCcc-cccccccCCCe--EEEEecCChhhhhhhc----CCCcEEEcC
Q 036977 257 QEKRVLIILDNIWTKL--------ELDAVGIPSGDVD-EKDREDDQRRC--TIILTSRSRDLLCIDM----NSQKIFWID 321 (693)
Q Consensus 257 ~~k~~LlVlDdv~~~~--------~~~~l~~~~~~~~-~~~~~~~~~~~--~IivTtR~~~v~~~~~----~~~~~~~l~ 321 (693)
. .+-+|||||++... +|......+..+. +.+......+. ++|.|.....-..... -......+.
T Consensus 493 ~-~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 493 Y-APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred h-CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 4 68999999998542 2211100000000 11222233333 3455554443221111 123477889
Q ss_pred CCCHHHHHHHHHHhhh
Q 036977 322 ALSKEEALHLAKLQHL 337 (693)
Q Consensus 322 ~L~~~ea~~Lf~~~~~ 337 (693)
.+...+..++++....
T Consensus 572 ap~~~~R~~IL~~~~s 587 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFS 587 (952)
T ss_pred CcchhHHHHHHHHHHH
Confidence 9988888888776654
No 191
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.86 E-value=0.0062 Score=57.15 Aligned_cols=125 Identities=22% Similarity=0.201 Sum_probs=65.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc---C---CCC--EEEEEEecCCCChHHHHHHHHHHhCCCCC---C---CCC
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED---K---LID--KVVMAEVTQNPDPQKIQDKLASDLGMKFD---L---NDS 243 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~---~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~---~~~ 243 (693)
+-.+++|+|++|+|||||.+.+..+...- . .|. .+.|+ .+ .+.++.++.... . .-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 44789999999999999999986421110 0 000 12222 11 455666665321 1 111
Q ss_pred H-HHHHHHHHHHHhcCC--cEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhhhhhcCCCcEEEc
Q 036977 244 I-HHRASRLRERLKQEK--RVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLCIDMNSQKIFWI 320 (693)
Q Consensus 244 ~-~~~~~~l~~~L~~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~~~~~~~~~~~l 320 (693)
. ....-.+.+.+.. + +-++++|+.....+...... +.+.++.....|..||++|++...+. ..+.++.+
T Consensus 90 gGq~qrl~laral~~-~~~p~llLlDEPt~~LD~~~~~~----l~~~l~~~~~~g~tvIivSH~~~~~~---~~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFS-EPPGTLFILDEPSTGLHQQDINQ----LLEVIKGLIDLGNTVILIEHNLDVLS---SADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhh-CCCCCEEEEeCCcccCCHHHHHH----HHHHHHHHHhCCCEEEEEeCCHHHHH---hCCEEEEE
Confidence 1 2223334445544 5 78999999865533222110 11111221234667999999987642 24455554
No 192
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.86 E-value=0.00098 Score=58.46 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999885
No 193
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.85 E-value=0.0016 Score=49.22 Aligned_cols=60 Identities=28% Similarity=0.443 Sum_probs=42.3
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCccccccceeccCCCCcccccCCCCCcCEeecCCCc
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLEEVLHLEELNAKEEHIGPLFPRLSWLRLIDLPKLK 625 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~~l~~L~~L~l~~~~l~~~~~~L~~L~~L~L~~c~ 625 (693)
++|+.|.+.+| ++.. .++..+..+++|++|+++++. ++.++ +..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~-i~~~~f~~l~~L~~L~l~~N~-l~~i~------------~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTE-IPPDSFSNLPNLETLDLSNNN-LTSIP------------PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESE-ECTTTTTTGTTESEEEETSSS-ESEEE------------TTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCc-cCHHHHcCCCCCCEeEccCCc-cCccC------------HHHHcCCCCCCEEeCcCCc
Confidence 47888999887 3443 355788888999999987663 33332 2347888888888888753
No 194
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.003 Score=60.06 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhhhh
Q 036977 248 ASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLCI 310 (693)
Q Consensus 248 ~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~~ 310 (693)
..++.+.+-- ++-+.|||+.++..+.+.+... ...+.....+++-+++.|++..++.+
T Consensus 152 R~EilQ~~~l-ePkl~ILDE~DSGLDIdalk~V----~~~i~~lr~~~~~~liITHy~rll~~ 209 (251)
T COG0396 152 RNEILQLLLL-EPKLAILDEPDSGLDIDALKIV----AEGINALREEGRGVLIITHYQRLLDY 209 (251)
T ss_pred HHHHHHHHhc-CCCEEEecCCCcCccHHHHHHH----HHHHHHHhcCCCeEEEEecHHHHHhh
Confidence 3444444444 6789999999998776665331 11122224557778999999998754
No 195
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.84 E-value=0.0007 Score=70.61 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=80.7
Q ss_pred cCcceeeecCCCCCC--cCCCchhhcCCCCCCEEEecCCCCC-----------ccccccceeccCCCCccc--------c
Q 036977 551 NNLRELVVDDCTNMS--SAIPANLLRCLNNLRYLEVRNCDSL-----------EEVLHLEELNAKEEHIGP--------L 609 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~--~~~~~~~l~~L~~L~~L~l~~c~~l-----------~~l~~L~~L~l~~~~l~~--------~ 609 (693)
++|+.|.+.+|.-.. ....+..+..+++|++|++++|.-- ..+++|++|+++++.+.. .
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 689999999986431 1123445677889999999998522 134589999999977642 2
Q ss_pred cCCCCCcCEeecCCCcCccc-----cccccc-CCCCcCEEecccccccc-----ccccc---ccccceeeccccccc
Q 036977 610 FPRLSWLRLIDLPKLKRFYN-----FTGNII-ELPELRYLTIENCPDME-----TFISN---STSVLHMTADNKEAQ 672 (693)
Q Consensus 610 ~~~L~~L~~L~L~~c~~l~~-----LP~~i~-~L~~L~~L~i~~C~~L~-----~lp~~---~~~l~~l~~~~~~~~ 672 (693)
+..+++|++|++++|+ +.. +...+. ..+.|++|++.+|. +. .++.. ..+++.+.++++.-.
T Consensus 217 ~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 217 LASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred hcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 6788999999999965 442 111211 35899999999994 43 22222 256777777665443
No 196
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0062 Score=64.38 Aligned_cols=134 Identities=17% Similarity=0.168 Sum_probs=82.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
+...+.+.|++|+|||+||..++... .|..+--++-.+-.. .++......+.+.+.+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~miG-------------------~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDMIG-------------------LSESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHccC-------------------ccHHHHHHHHHHHHHH
Confidence 45678899999999999999998774 377655443222111 2222233334444432
Q ss_pred C---CcEEEEEeCCCCccCccccCCCCCC-----cccccccccCCCe--EEEEecCChhhhhhhcC----CCcEEEcCCC
Q 036977 258 E---KRVLIILDNIWTKLELDAVGIPSGD-----VDEKDREDDQRRC--TIILTSRSRDLLCIDMN----SQKIFWIDAL 323 (693)
Q Consensus 258 ~---k~~LlVlDdv~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~--~IivTtR~~~v~~~~~~----~~~~~~l~~L 323 (693)
. .--.||+||+....+|-.++..|.+ +..++......|- -|+-||....++.. |+ ....+.+..+
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~-m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE-MGILDCFSSTIHVPNL 672 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH-cCHHHhhhheeecCcc
Confidence 1 3468999999999999888776655 1122333333443 45567766666532 33 2348888888
Q ss_pred CH-HHHHHHHHHh
Q 036977 324 SK-EEALHLAKLQ 335 (693)
Q Consensus 324 ~~-~ea~~Lf~~~ 335 (693)
+. ++..+.++..
T Consensus 673 ~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 673 TTGEQLLEVLEEL 685 (744)
T ss_pred CchHHHHHHHHHc
Confidence 76 6777776654
No 197
>PRK09183 transposase/IS protein; Provisional
Probab=96.82 E-value=0.037 Score=55.60 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
...+.|+|++|+|||+||..++......
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 3567899999999999999998775543
No 198
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.81 E-value=0.11 Score=55.57 Aligned_cols=90 Identities=23% Similarity=0.165 Sum_probs=52.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMKFDL---NDSIHHRASRLRE 253 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 253 (693)
++.+|.++|.+|+||||++..++...+.++ ..+..|+.... ....+-++...+..+.+... ..+.......-.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G--~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~ 176 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG--FKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVE 176 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHH
Confidence 468999999999999999999998776442 25566655432 23333344556666554322 1233333332333
Q ss_pred HHhcCCcEEEEEeCCC
Q 036977 254 RLKQEKRVLIILDNIW 269 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~ 269 (693)
.++....=++++|-.-
T Consensus 177 ~~~~~~~DvViIDTaG 192 (429)
T TIGR01425 177 KFKKENFDIIIVDTSG 192 (429)
T ss_pred HHHhCCCCEEEEECCC
Confidence 3333234577788753
No 199
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.78 E-value=0.02 Score=57.75 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHH
Q 036977 164 MKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQ 227 (693)
Q Consensus 164 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 227 (693)
.+.++++..++..+ .-+.+.|++|+|||++|+.+++... ...+.+++....+..+++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 34455566665443 3556899999999999999987432 234556666555544443
No 200
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.77 E-value=0.0086 Score=61.67 Aligned_cols=91 Identities=23% Similarity=0.312 Sum_probs=60.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhcc----CCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC---------CCCHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMED----KLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL---------NDSIH 245 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 245 (693)
-.++-|+|.+|+|||+|+.+++-..... ..-..++|++....|+.+.+. +++++++.+.+. ..+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 4788999999999999999877543321 112478999999989888864 466777654321 12333
Q ss_pred HHH---HHHHHHHhcCCcEEEEEeCCCC
Q 036977 246 HRA---SRLRERLKQEKRVLIILDNIWT 270 (693)
Q Consensus 246 ~~~---~~l~~~L~~~k~~LlVlDdv~~ 270 (693)
+.. ..+...+..++.-|+|+|.+..
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 333 3334444444566899998753
No 201
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.75 E-value=0.0042 Score=62.89 Aligned_cols=138 Identities=18% Similarity=0.255 Sum_probs=78.3
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHh-hccCCCCEEEE----EEecCCC---------Ch
Q 036977 158 EAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKV-MEDKLIDKVVM----AEVTQNP---------DP 223 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~w----v~vs~~~---------~~ 223 (693)
-++-+|..+..--++.|.++.+..|.+.|.+|.|||-||-+..-.. -++..|..++- +.+++.. ..
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm 303 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKM 303 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhc
Confidence 3455788888889999999999999999999999998887654432 22334554332 2333321 12
Q ss_pred HHHHHHHHHHhCCCCCCC-CCHHHHHHHH-H---------HHHhc--CCcEEEEEeCCCCcc--CccccCCCCCCccccc
Q 036977 224 QKIQDKLASDLGMKFDLN-DSIHHRASRL-R---------ERLKQ--EKRVLIILDNIWTKL--ELDAVGIPSGDVDEKD 288 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~-~~~~~~~~~l-~---------~~L~~--~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~ 288 (693)
.-+++.|.+-+..-.... .. ......+ . .++++ -.+-++|+|++++.. +...+...
T Consensus 304 ~PWmq~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR-------- 374 (436)
T COG1875 304 GPWMQAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTR-------- 374 (436)
T ss_pred cchHHHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHh--------
Confidence 233444443332111110 11 1111111 1 11111 124689999999873 34444222
Q ss_pred ccccCCCeEEEEecCChhh
Q 036977 289 REDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 289 ~~~~~~~~~IivTtR~~~v 307 (693)
.+.|+||+.|---.++
T Consensus 375 ---~G~GsKIVl~gd~aQi 390 (436)
T COG1875 375 ---AGEGSKIVLTGDPAQI 390 (436)
T ss_pred ---ccCCCEEEEcCCHHHc
Confidence 7789999988654443
No 202
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0023 Score=72.16 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=94.6
Q ss_pred CCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCC----CEEEE-EEecCCCChHHHHHHH
Q 036977 156 DNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLI----DKVVM-AEVTQNPDPQKIQDKL 230 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~w-v~vs~~~~~~~~~~~i 230 (693)
..+.++||++++.++++.|....-.--.++|.+|||||++|.-++...-.++-. +..++ .+++
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g------------ 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG------------ 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH------------
Confidence 456789999999999999964322223478999999999999988886554211 11221 1111
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--------c---cccCCCCCCcccccccccCCCeEEE
Q 036977 231 ASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--------L---DAVGIPSGDVDEKDREDDQRRCTII 299 (693)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--------~---~~l~~~~~~~~~~~~~~~~~~~~Ii 299 (693)
.+.-.....-+.+++...+.+.++..++.++.+|.+++.-. . +-++..+. .+.--.|-
T Consensus 236 --~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA---------RGeL~~IG 304 (786)
T COG0542 236 --SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA---------RGELRCIG 304 (786)
T ss_pred --HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh---------cCCeEEEE
Confidence 11111111244566666666666654589999999886521 1 11222222 22222366
Q ss_pred EecCChhh--hh---hhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 300 LTSRSRDL--LC---IDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 300 vTtR~~~v--~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.||-++-- .. ........+.+..-+.+++..++.....
T Consensus 305 ATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 305 ATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred eccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHH
Confidence 67655432 00 0112456899999999999999876553
No 203
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.73 E-value=0.0044 Score=58.44 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=29.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEE
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMA 215 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 215 (693)
+..+|.++|++|+||||+|+.+++..... +..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 45799999999999999999999988654 5555555
No 204
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.014 Score=61.03 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=82.8
Q ss_pred cccchHHHHHHHHHHHhc-CCceE-EEEEecCCCcHHHHHHHHHHHhhccC-------------------CCCEEEEEEe
Q 036977 159 AFDSRMKVFQDVMEALKD-DKLNI-IGVYGMGGVGKTTLVKQVAKKVMEDK-------------------LIDKVVMAEV 217 (693)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~-~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~v 217 (693)
.++|-+.....+..+..+ ++.+. +.++|++|+||||+|..+.+...... ..+.+..++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356777778888888763 34444 99999999999999999999876432 1234555555
Q ss_pred cCCCC---hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--ccccCCCCCCccccccccc
Q 036977 218 TQNPD---PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--LDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 218 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~ 292 (693)
+.... ..+..+++.+....... .++.-++++|+++.... -+.+...... .
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEe--------p 136 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEE--------P 136 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhcc--------C
Confidence 54444 34444444444433221 12567999999986632 2222111111 4
Q ss_pred CCCeEEEEecCChh-hhhhhcCCCcEEEcCCCCHH
Q 036977 293 QRRCTIILTSRSRD-LLCIDMNSQKIFWIDALSKE 326 (693)
Q Consensus 293 ~~~~~IivTtR~~~-v~~~~~~~~~~~~l~~L~~~ 326 (693)
...+.+|++|.+.. +.......-..+.+.+.+..
T Consensus 137 ~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 137 PKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred CCCeEEEEEcCChhhccchhhhcceeeecCCchHH
Confidence 45677777777443 32221222346666664433
No 205
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.72 E-value=0.0097 Score=60.61 Aligned_cols=88 Identities=23% Similarity=0.313 Sum_probs=52.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC-ChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP-DPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLK 256 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (693)
+.++++++|++|+||||++..++.....+..-..+..++..... ....-+....+.++.+.....+..+....+. .+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-Hcc
Confidence 45799999999999999999998877543111356666654321 2233344455556665544344444443333 333
Q ss_pred cCCcEEEEEeCC
Q 036977 257 QEKRVLIILDNI 268 (693)
Q Consensus 257 ~~k~~LlVlDdv 268 (693)
+ .=+|++|..
T Consensus 272 ~--~d~vliDt~ 281 (282)
T TIGR03499 272 D--KDLILIDTA 281 (282)
T ss_pred C--CCEEEEeCC
Confidence 2 357778763
No 206
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.011 Score=64.15 Aligned_cols=185 Identities=14% Similarity=0.104 Sum_probs=104.8
Q ss_pred CCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccC--CCCEEEEEEecCCCChHHHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDK--LIDKVVMAEVTQNPDPQKIQDKLA 231 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~~~~~i~ 231 (693)
.....++|.+-....|...+..++. .--...|+-|+||||+|+.++...--.+ +.+. .+.-...+.|.
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP---------C~~C~~Ck~I~ 83 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP---------CGKCISCKEIN 83 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc---------chhhhhhHhhh
Confidence 4456779999999999999987653 4557889999999999999988754331 1111 11111112221
Q ss_pred HHhCCCCCC-----CCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCc--cCccccCCCCCCcccccccccCCCeEEEE
Q 036977 232 SDLGMKFDL-----NDSIHHRASRLRERLK----QEKRVLIILDNIWTK--LELDAVGIPSGDVDEKDREDDQRRCTIIL 300 (693)
Q Consensus 232 ~~l~~~~~~-----~~~~~~~~~~l~~~L~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~Iiv 300 (693)
..-..+.-+ ....+ -+..+.+... .++.=+.|+|+|+-. ..|+.+.-.+.. -....+.|+
T Consensus 84 ~g~~~DviEiDaASn~gVd-diR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE--------PP~hV~FIl 154 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVD-DIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE--------PPSHVKFIL 154 (515)
T ss_pred cCCcccchhhhhhhccChH-HHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc--------CccCeEEEE
Confidence 110000000 01111 1122222222 235558999999855 456665444432 334455444
Q ss_pred -ecCChhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCC
Q 036977 301 -TSRSRDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHS 373 (693)
Q Consensus 301 -TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~g 373 (693)
||-...+..........|.+..++.++-...+...+... .-....+....|++...|
T Consensus 155 ATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E----------------~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 155 ATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKE----------------GINIEEDALSLIARAAEG 212 (515)
T ss_pred ecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhc----------------CCccCHHHHHHHHHHcCC
Confidence 444444543334555689999999998888887777533 222334555666666666
No 207
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.71 E-value=0.0066 Score=57.07 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=64.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecC--CCChHHHHHHHHHHhCCCCCC----C-------CC-
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQ--NPDPQKIQDKLASDLGMKFDL----N-------DS- 243 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~----~-------~~- 243 (693)
.-.+++|+|.+|+|||||.+.++...... .+.++++-.. ........ ..++.-... + -+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~ 99 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSG 99 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCH
Confidence 45689999999999999999999875432 3333332111 01111111 111110000 0 11
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhhhhhcCCCcEEEc
Q 036977 244 IHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLCIDMNSQKIFWI 320 (693)
Q Consensus 244 ~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~~~~~~~~~~~l 320 (693)
-+...-.+.+.+.. ++-++++|+.....+...... +.+.++.+...|..||++|++..... . .+.++.+
T Consensus 100 G~~qrv~la~al~~-~p~~lllDEPt~~LD~~~~~~----l~~~l~~~~~~~~tii~~sh~~~~~~--~-~d~v~~l 168 (173)
T cd03246 100 GQRQRLGLARALYG-NPRILVLDEPNSHLDVEGERA----LNQAIAALKAAGATRIVIAHRPETLA--S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEECCccccCHHHHHH----HHHHHHHHHhCCCEEEEEeCCHHHHH--h-CCEEEEE
Confidence 11222334444444 577999999876543222110 11122222334667999999887642 2 4445444
No 208
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.70 E-value=0.011 Score=55.16 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=65.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEE-------EecCCCC--hHHHHHHHHHHhCCCCCCCCCHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMA-------EVTQNPD--PQKIQDKLASDLGMKFDLNDSIHHRA 248 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~ 248 (693)
+-.+++|+|..|.|||||++.+....... .+.+++ .+.+... ...+...+.-. ....-..-+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~r 99 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQR 99 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHH
Confidence 45689999999999999999999875532 122211 1222221 11233333210 111111222333
Q ss_pred HHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhhhhhcCCCcEEEc
Q 036977 249 SRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLCIDMNSQKIFWI 320 (693)
Q Consensus 249 ~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~~~~~~~~~~~l 320 (693)
-.+.+.+.. ++-++++|+.-+..+...... +.+.++.. +..||++|++..... ..++++.+
T Consensus 100 v~laral~~-~p~~lllDEPt~~LD~~~~~~----l~~~l~~~---~~tiiivsh~~~~~~---~~d~i~~l 160 (166)
T cd03223 100 LAFARLLLH-KPKFVFLDEATSALDEESEDR----LYQLLKEL---GITVISVGHRPSLWK---FHDRVLDL 160 (166)
T ss_pred HHHHHHHHc-CCCEEEEECCccccCHHHHHH----HHHHHHHh---CCEEEEEeCChhHHh---hCCEEEEE
Confidence 344555555 678999999776543222110 11112211 356888888876532 24445544
No 209
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.70 E-value=0.076 Score=52.55 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCC
Q 036977 164 MKVFQDVMEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLN 241 (693)
Q Consensus 164 ~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 241 (693)
...+..+.++..+ .+...+.++|.+|+|||+||.++++....+ -..++++++ .+++..+-...... .
T Consensus 82 ~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~------~~l~~~l~~~~~~~--~- 150 (244)
T PRK07952 82 MNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITV------ADIMSAMKDTFSNS--E- 150 (244)
T ss_pred HHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEH------HHHHHHHHHHHhhc--c-
Confidence 3345555554432 233578999999999999999999997654 345666643 44444444333210 0
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 242 DSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 242 ~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
.+. ..+.+.+.. .=+||+||+...
T Consensus 151 ~~~----~~~l~~l~~--~dlLvIDDig~~ 174 (244)
T PRK07952 151 TSE----EQLLNDLSN--VDLLVIDEIGVQ 174 (244)
T ss_pred ccH----HHHHHHhcc--CCEEEEeCCCCC
Confidence 111 223344543 458999998654
No 210
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.026 Score=60.99 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=90.5
Q ss_pred CccccchHHHHHHHHHHHhc------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChH
Q 036977 157 NEAFDSRMKVFQDVMEALKD------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQ 224 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 224 (693)
...+-|-+..+.++.+.+.. ..++=|.++|++|.|||.||++++++..+- | +.++-
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isA----- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISA----- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecc-----
Confidence 45677889988888877642 245778899999999999999999998764 3 22221
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc---Cccc------cCC-CCCCcccccccc-cC
Q 036977 225 KIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL---ELDA------VGI-PSGDVDEKDRED-DQ 293 (693)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~---~~~~------l~~-~~~~~~~~~~~~-~~ 293 (693)
-+|+..+.. ++++ .+.++...-.+.-+|++++|+++-.. +|.. +.. -+..|+.+-... .+
T Consensus 257 ---peivSGvSG-----ESEk-kiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 257 ---PEIVSGVSG-----ESEK-KIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ---hhhhcccCc-----ccHH-HHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 122222211 2233 33344444444488999999988442 1100 000 001122222211 23
Q ss_pred CCeEEEEecCChhhhhhh---c-CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 294 RRCTIILTSRSRDLLCID---M-NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 294 ~~~~IivTtR~~~v~~~~---~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.+.-||-+|...+.+... . .....+.+..-+.....+++...+.
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHh
Confidence 444455455444433211 1 2345788888888888888777664
No 211
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.69 E-value=0.012 Score=54.28 Aligned_cols=40 Identities=35% Similarity=0.490 Sum_probs=31.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
++.|+|.+|+||||++..++...... -..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 36899999999999999999887653 45678888765543
No 212
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.67 E-value=0.069 Score=57.58 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=52.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
.++++++|++|+||||++..++........-..+..++...... ..+-+....+.++.+.....+..+....+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 36899999999999999999887765111134567776643221 2233444455566655443444444444443 32
Q ss_pred CCcEEEEEeCCC
Q 036977 258 EKRVLIILDNIW 269 (693)
Q Consensus 258 ~k~~LlVlDdv~ 269 (693)
..=++++|..-
T Consensus 299 -~~DlVlIDt~G 309 (424)
T PRK05703 299 -DCDVILIDTAG 309 (424)
T ss_pred -CCCEEEEeCCC
Confidence 34688899753
No 213
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.67 E-value=0.0028 Score=65.43 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=41.3
Q ss_pred cccchHHHHHHHHHHHhc------CCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 159 AFDSRMKVFQDVMEALKD------DKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.++|-++.++++++++.. .+-+++.++|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 689999999999999853 24588999999999999999999998765
No 214
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.66 E-value=0.0071 Score=57.27 Aligned_cols=122 Identities=20% Similarity=0.246 Sum_probs=66.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEE---ecCCCChHHHH------HHHHHHhCCCCCC-----CCC
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAE---VTQNPDPQKIQ------DKLASDLGMKFDL-----NDS 243 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~------~~i~~~l~~~~~~-----~~~ 243 (693)
+-.+++|+|.+|+|||||++.++..... ..+.+++. +.. .+...+. -++++.++..... ..+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 4578999999999999999999986543 34444432 221 1221211 1245555543211 112
Q ss_pred -HHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCC-CeEEEEecCChhhh
Q 036977 244 -IHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQR-RCTIILTSRSRDLL 308 (693)
Q Consensus 244 -~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~IivTtR~~~v~ 308 (693)
-+...-.+.+.+.. .+-++++|+.....+...... +.+.+...... +..||++|++...+
T Consensus 100 ~G~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~----~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIE----LLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHH----HHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22223345555555 678999999875533222100 11112222233 66789999887754
No 215
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.66 E-value=0.0074 Score=56.93 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=72.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEe-------------------cCCCC----------------
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEV-------------------TQNPD---------------- 222 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-------------------s~~~~---------------- 222 (693)
+-.|++|+|++|+|||||.+.+..-...+ .+.+|++- -+.|+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 45799999999999999999997665543 34555532 11121
Q ss_pred ---------hHHHHHHHHHHhCCCCCC-----C-CCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccc
Q 036977 223 ---------PQKIQDKLASDLGMKFDL-----N-DSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEK 287 (693)
Q Consensus 223 ---------~~~~~~~i~~~l~~~~~~-----~-~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~ 287 (693)
.++...++++.+|..... . ..-.+..-.+-+.|.- ++-++.||+.-+..+-+-.+..+ +.
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM-~P~vmLFDEPTSALDPElv~EVL----~v 178 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM-DPKVMLFDEPTSALDPELVGEVL----DV 178 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcC-CCCEEeecCCcccCCHHHHHHHH----HH
Confidence 133344455555554322 1 1122233356677776 78899999998775533332211 11
Q ss_pred cccccCCCeEEEEecCChhhh
Q 036977 288 DREDDQRRCTIILTSRSRDLL 308 (693)
Q Consensus 288 ~~~~~~~~~~IivTtR~~~v~ 308 (693)
+......|...|+.|++..-|
T Consensus 179 m~~LA~eGmTMivVTHEM~FA 199 (240)
T COG1126 179 MKDLAEEGMTMIIVTHEMGFA 199 (240)
T ss_pred HHHHHHcCCeEEEEechhHHH
Confidence 222255677788888887665
No 216
>PRK06696 uridine kinase; Validated
Probab=96.66 E-value=0.0031 Score=61.98 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHh---cCCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 162 SRMKVFQDVMEALK---DDKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 162 gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.|.+.+++|.+.+. .++..+|+|.|.+|+||||+|+.+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47788888888875 346789999999999999999999988754
No 217
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.66 E-value=0.02 Score=59.52 Aligned_cols=91 Identities=22% Similarity=0.276 Sum_probs=59.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhc----cCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC---------CCCHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVME----DKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL---------NDSIH 245 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 245 (693)
-.++-|+|.+|+|||+|+..++-.... ...-..++|++....|++.++. +++++++.+.+. ..+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCCHH
Confidence 478889999999999999988754332 1122478999999999988864 466777654321 23344
Q ss_pred HHHH---HHHHHHhcCCcEEEEEeCCCC
Q 036977 246 HRAS---RLRERLKQEKRVLIILDNIWT 270 (693)
Q Consensus 246 ~~~~---~l~~~L~~~k~~LlVlDdv~~ 270 (693)
+... .+...+...+--|||+|.+-.
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 3332 333344443556899998753
No 218
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.65 E-value=0.0022 Score=59.61 Aligned_cols=118 Identities=18% Similarity=0.230 Sum_probs=62.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC--CChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN--PDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERL 255 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L 255 (693)
+-.+++|+|.+|+|||||.+.++..... ..+.+++.-... .+..+.. .+.++.-.+- ..-+...-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~qL-S~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRDAR---RAGIAMVYQL-SVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHHHH---hcCeEEEEec-CHHHHHHHHHHHHH
Confidence 4478999999999999999999876543 345555432111 1111111 1112111111 11222333445555
Q ss_pred hcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhh
Q 036977 256 KQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 256 ~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v 307 (693)
-. ++-++++|+..+..+...... +.+.++.....+..||++|++...
T Consensus 98 ~~-~p~illlDEP~~~LD~~~~~~----l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 98 AR-NARLLILDEPTAALTPAEVER----LFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred hc-CCCEEEEECCCcCCCHHHHHH----HHHHHHHHHHCCCEEEEEeCCHHH
Confidence 55 678999999876543221110 112222223346678999998764
No 219
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0059 Score=64.62 Aligned_cols=95 Identities=24% Similarity=0.265 Sum_probs=59.5
Q ss_pred CCccccchHHHHHHHHHHHhcC--------C-ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHH
Q 036977 156 DNEAFDSRMKVFQDVMEALKDD--------K-LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKI 226 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 226 (693)
+..+...-.+++++|+++|.+. + ++=|.++|++|.|||-||++|+.+..+- | |...+..|+.--+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdEm~V 378 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDEMFV 378 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhhhhh
Confidence 3344445667888999999753 2 4678999999999999999999887764 2 2233333321100
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 227 QDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
|. -..++..|...-+..-+|+|.+|+++..
T Consensus 379 --------Gv-------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 379 --------GV-------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred --------cc-------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 00 0112333333333347899999998854
No 220
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.64 E-value=0.0008 Score=76.53 Aligned_cols=97 Identities=23% Similarity=0.332 Sum_probs=58.5
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-----CCccccccceeccCCCCcccc-----cCCCCCcCEe
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-----SLEEVLHLEELNAKEEHIGPL-----FPRLSWLRLI 619 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-----~l~~l~~L~~L~l~~~~l~~~-----~~~L~~L~~L 619 (693)
||+|++|.+.+-.-... .......++++|+.|||+++. .+..|.+|+.|.+.+-.++.. +.+|++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 67888888876332111 122344568888888887774 233667777777777444432 6678888888
Q ss_pred ecCCCcCcccccc-------cccCCCCcCEEecccc
Q 036977 620 DLPKLKRFYNFTG-------NIIELPELRYLTIENC 648 (693)
Q Consensus 620 ~L~~c~~l~~LP~-------~i~~L~~L~~L~i~~C 648 (693)
|++. .+...-|. .-..||+|+.||.++-
T Consensus 226 DIS~-~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 226 DISR-DKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred eccc-cccccchHHHHHHHHhcccCccccEEecCCc
Confidence 8876 33332231 1114777777777764
No 221
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.63 E-value=0.0089 Score=59.85 Aligned_cols=90 Identities=28% Similarity=0.342 Sum_probs=57.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhcc----CCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC---------CCCHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMED----KLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL---------NDSIH 245 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 245 (693)
-.+.=|+|.+|+|||+|+.+++-..... +.=..++|++-...|+...+. +|+++.+...+. ..+.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4789999999999999999888665432 122469999999999887764 566665432211 12333
Q ss_pred HH---HHHHHHHHhcCCcEEEEEeCCC
Q 036977 246 HR---ASRLRERLKQEKRVLIILDNIW 269 (693)
Q Consensus 246 ~~---~~~l~~~L~~~k~~LlVlDdv~ 269 (693)
++ ...+...+.+.+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 33 3334444444456688899864
No 222
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.62 E-value=0.0022 Score=61.73 Aligned_cols=110 Identities=11% Similarity=0.135 Sum_probs=61.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQ-KIQDKLASDLGMKFDLNDSIHHRASRLRERLKQE 258 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (693)
++|.|+|+.|+||||+++.+....... ....++. +.++.... .-...+..+-.. ..+.......++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr~- 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPIEFVHESKRSLINQREV----GLDTLSFENALKAALRQ- 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCccccccCccceeeeccc----CCCccCHHHHHHHHhcC-
Confidence 578999999999999999988776532 2333332 11111100 000011111000 11122345567777776
Q ss_pred CcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhh
Q 036977 259 KRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL 308 (693)
Q Consensus 259 k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~ 308 (693)
.+=.+++|++.+.+........ ...|..++.|++..++.
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~-----------a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTA-----------AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHH-----------HHcCCEEEEEecCCcHH
Confidence 6779999999766543332111 33466688888877653
No 223
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.058 Score=56.22 Aligned_cols=164 Identities=10% Similarity=0.090 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhcCC-ceEEEEEecCCCcHHHHHHHHHHHhhcc--------------------CCCCEEEEEEecCCCCh
Q 036977 165 KVFQDVMEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKKVMED--------------------KLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 165 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~ 223 (693)
..-+++...+..++ ...+.+.|+.|+||+++|..++...--. .|.|. .++.-...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~--- 84 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKG--- 84 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecccc---
Confidence 44566777776655 4677899999999999999988875321 12222 12211000
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeE
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLK----QEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCT 297 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~ 297 (693)
......++ +..+.+.+. .+++-++|+|+++... .-+.+...+.. -..++.
T Consensus 85 ---------------~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE--------Pp~~t~ 140 (334)
T PRK07993 85 ---------------KSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE--------PPENTW 140 (334)
T ss_pred ---------------cccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC--------CCCCeE
Confidence 00011111 122222222 2366799999988652 23333222221 334555
Q ss_pred EEEecCCh-hhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 298 IILTSRSR-DLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 298 IivTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
+|++|.+. .+..+....-..+.+.+++.+++.+.+..... . ..+.+..++..++|-|.
T Consensus 141 fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~-~--------------------~~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 141 FFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT-M--------------------SQDALLAALRLSAGAPG 199 (334)
T ss_pred EEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC-C--------------------CHHHHHHHHHHcCCCHH
Confidence 66666554 44433333345789999999998887755421 1 02335677888999887
Q ss_pred c
Q 036977 377 E 377 (693)
Q Consensus 377 a 377 (693)
.
T Consensus 200 ~ 200 (334)
T PRK07993 200 A 200 (334)
T ss_pred H
Confidence 3
No 224
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.60 E-value=0.087 Score=51.22 Aligned_cols=179 Identities=17% Similarity=0.189 Sum_probs=102.1
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEe-cCCCChHHHHHHHHHHhCCCCCCC--CCHHHHHHHHH
Q 036977 176 DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEV-TQNPDPQKIQDKLASDLGMKFDLN--DSIHHRASRLR 252 (693)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~ 252 (693)
.++.+++.++|.-|+|||++.+.+......+ +... +.+ ....+...+...++..+..+.... ...+.....+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED---QVAV-VVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC---ceEE-EEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 4566799999999999999999655554322 1222 333 345677888888888887743321 22344555666
Q ss_pred HHHhcCCc-EEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCChh-------hhhhhcCCCcE-EEcC
Q 036977 253 ERLKQEKR-VLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD-------LLCIDMNSQKI-FWID 321 (693)
Q Consensus 253 ~~L~~~k~-~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~-------v~~~~~~~~~~-~~l~ 321 (693)
...+++++ ..++.||..... .++.++.-. + .-.+..+. -+|+..-..+- +.........+ |.+.
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~-n---l~~~~~~~-l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLT-N---LEEDSSKL-LSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHH-h---hcccccCc-eeeeecCCcccchhhchHHHHhhhheEEEEEecC
Confidence 66666677 899999988652 222221100 0 00000111 12332222111 00100111234 9999
Q ss_pred CCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCc-hhhHHHHHhhhcCCCccc
Q 036977 322 ALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDE-GKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 322 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~I~~~c~glPLa 377 (693)
|++.++...++.....+. |. ..+- .......|....+|.|.+
T Consensus 199 P~~~~~t~~yl~~~Le~a--~~------------~~~l~~~~a~~~i~~~sqg~P~l 241 (269)
T COG3267 199 PLTEAETGLYLRHRLEGA--GL------------PEPLFSDDALLLIHEASQGIPRL 241 (269)
T ss_pred CcChHHHHHHHHHHHhcc--CC------------CcccCChhHHHHHHHHhccchHH
Confidence 999999999988887644 11 1222 235566788888888875
No 225
>PRK06921 hypothetical protein; Provisional
Probab=96.60 E-value=0.0074 Score=60.80 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=30.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEe
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEV 217 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 217 (693)
....+.++|..|+|||.||.++++....+. ...++|+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 457789999999999999999999876431 234666654
No 226
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.58 E-value=0.0093 Score=58.78 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=50.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC------------------
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL------------------ 240 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------------------ 240 (693)
..++.|.|.+|+||||+|.+++.....+ -..++|++... +..++.+.+ .+++...+.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 98 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQL--TTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSG 98 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCCC--CHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccC
Confidence 4699999999999999987766654322 14567776433 445555555 344432210
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 241 NDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 241 ~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
..+.+.....+.+.....++-++|+|.+...
T Consensus 99 ~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~ 129 (230)
T PRK08533 99 NSEKRKFLKKLMNTRRFYEKDVIIIDSLSSL 129 (230)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECccHH
Confidence 0111223333333333235678999997653
No 227
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.57 E-value=0.0097 Score=58.60 Aligned_cols=86 Identities=23% Similarity=0.318 Sum_probs=52.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHH----hCCC--CCCCCCHHH---HHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASD----LGMK--FDLNDSIHH---RAS 249 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~----l~~~--~~~~~~~~~---~~~ 249 (693)
-.++.|+|.+|+|||++|.+++...... -..++|++.. .++...+. +++.. +... .....+..+ ...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 4799999999999999999998876543 4678999887 55554433 23222 1000 001122222 233
Q ss_pred HHHHHHhcCCcEEEEEeCCC
Q 036977 250 RLRERLKQEKRVLIILDNIW 269 (693)
Q Consensus 250 ~l~~~L~~~k~~LlVlDdv~ 269 (693)
.+...++. +.-++|+|.+.
T Consensus 99 ~~~~~~~~-~~~lvVIDsi~ 117 (225)
T PRK09361 99 KAEKLAKE-NVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHh-cccEEEEeCcH
Confidence 44444443 66799999975
No 228
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00067 Score=66.45 Aligned_cols=119 Identities=21% Similarity=0.259 Sum_probs=76.1
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCcc---------ccccceeccCC-------CCcccccCCCC
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLEE---------VLHLEELNAKE-------EHIGPLFPRLS 614 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~~---------l~~L~~L~l~~-------~~l~~~~~~L~ 614 (693)
.+|+.|.+..|++.........+.+++.|..|+|+-|..... -++|..|++++ +.+..+..+.+
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 479999999999886544455677889999999988864431 13466666666 22333356677
Q ss_pred CcCEeecCCCcCccc-ccccccCCCCcCEEecccccccccccc------cccccceeecccccc
Q 036977 615 WLRLIDLPKLKRFYN-FTGNIIELPELRYLTIENCPDMETFIS------NSTSVLHMTADNKEA 671 (693)
Q Consensus 615 ~L~~L~L~~c~~l~~-LP~~i~~L~~L~~L~i~~C~~L~~lp~------~~~~l~~l~~~~~~~ 671 (693)
+|..|||++|..++. +-..+.+++.|++|.++.|..+- |. .-+++..|.+.||-.
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccccC
Confidence 777777777776653 11123367777777777776541 22 225566777766544
No 229
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0086 Score=58.77 Aligned_cols=125 Identities=19% Similarity=0.216 Sum_probs=69.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhcc----CCC----------CEEEEEEecCCC------Ch---------------
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMED----KLI----------DKVVMAEVTQNP------DP--------------- 223 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F----------~~~~wv~vs~~~------~~--------------- 223 (693)
-.+++|+|+.|.|||||.+.+..-.+.. ..| ..+.||.-...+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 4789999999999999999999844321 011 234554221110 11
Q ss_pred -------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCccccccc
Q 036977 224 -------QKIQDKLASDLGMKFDL-----NDS-IHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDRE 290 (693)
Q Consensus 224 -------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~ 290 (693)
.+...+.+++++...-. .-+ -+...-.+-+.|.+ ++=|++||+....-+...-.. +-+++.+
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~-~p~lllLDEP~~gvD~~~~~~----i~~lL~~ 184 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ-NPDLLLLDEPFTGVDVAGQKE----IYDLLKE 184 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc-CCCEEEecCCcccCCHHHHHH----HHHHHHH
Confidence 23444555555543211 112 22233345666666 788999998654322111000 1122333
Q ss_pred ccCCCeEEEEecCChhhh
Q 036977 291 DDQRRCTIILTSRSRDLL 308 (693)
Q Consensus 291 ~~~~~~~IivTtR~~~v~ 308 (693)
+...|+.|+++|++-...
T Consensus 185 l~~eg~tIl~vtHDL~~v 202 (254)
T COG1121 185 LRQEGKTVLMVTHDLGLV 202 (254)
T ss_pred HHHCCCEEEEEeCCcHHh
Confidence 345599999999998764
No 230
>PLN03150 hypothetical protein; Provisional
Probab=96.55 E-value=0.0036 Score=71.33 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=60.3
Q ss_pred cceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCC-------ccccccceeccCCCCcc----cccCCCCCcCEeec
Q 036977 553 LRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSL-------EEVLHLEELNAKEEHIG----PLFPRLSWLRLIDL 621 (693)
Q Consensus 553 L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l-------~~l~~L~~L~l~~~~l~----~~~~~L~~L~~L~L 621 (693)
++.|.+.++.-.. .+|..+..|++|+.|+++++..- ..+++|++|++++|++. +.+++|++|+.|+|
T Consensus 420 v~~L~L~~n~L~g--~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRG--FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccc--cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 5667776654322 45677888999999999887422 24556666666665443 23566666666666
Q ss_pred CCCcCcccccccccC-CCCcCEEeccccccccccc
Q 036977 622 PKLKRFYNFTGNIIE-LPELRYLTIENCPDMETFI 655 (693)
Q Consensus 622 ~~c~~l~~LP~~i~~-L~~L~~L~i~~C~~L~~lp 655 (693)
+++.--..+|..++. +.++..+++.+++.+...|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 664433355665543 2345566666655544443
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.014 Score=58.39 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=50.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
+..-+.++|.+|+|||.||.++.++.. +. --.+.+++ ..++..++...... ......+.+.++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-g~sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l~~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KA-GISVLFIT------APDLLSKLKAAFDE--------GRLEEKLLRELKK 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc-CCeEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHhhc
Confidence 667889999999999999999999988 42 23455544 44556666555432 1123345554543
Q ss_pred CCcEEEEEeCCCCc
Q 036977 258 EKRVLIILDNIWTK 271 (693)
Q Consensus 258 ~k~~LlVlDdv~~~ 271 (693)
-=||||||+-..
T Consensus 168 --~dlLIiDDlG~~ 179 (254)
T COG1484 168 --VDLLIIDDIGYE 179 (254)
T ss_pred --CCEEEEecccCc
Confidence 359999998653
No 232
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.55 E-value=0.013 Score=56.52 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+-..++|+|++|+|||||...+..-.+.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 4468999999999999999998865543
No 233
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.016 Score=60.56 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=54.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC-ChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP-DPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLK 256 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (693)
+.++|+++|++|+||||++..++.....+ -..+.+++..... ...+-++...+.++.+.....+.......+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 45799999999999999999999876543 2245556554322 22333444555666554433455555544443322
Q ss_pred cCCcEEEEEeCCC
Q 036977 257 QEKRVLIILDNIW 269 (693)
Q Consensus 257 ~~k~~LlVlDdv~ 269 (693)
..+.=++++|-.-
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 1123577888754
No 234
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.53 E-value=0.015 Score=59.48 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=58.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLRE 253 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 253 (693)
.+++-|+|..|+||||||..+....+.. -..++|++....++.. .++++|.+.+. +...++....+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4799999999999999999999886544 4568999998776654 35566665433 4556667777777
Q ss_pred HHhcCCcEEEEEeCCCCc
Q 036977 254 RLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~~~ 271 (693)
.++.+.--++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 777755568999998655
No 235
>PRK04296 thymidine kinase; Provisional
Probab=96.53 E-value=0.0032 Score=60.13 Aligned_cols=114 Identities=20% Similarity=0.135 Sum_probs=64.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHHhc
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL--NDSIHHRASRLRERLKQ 257 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~L~~ 257 (693)
.++.|+|..|.||||++..++...... ...++++. ..++.......++.+++..... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 477899999999999999998887544 23344442 1112122233455666543322 1233444444444 33
Q ss_pred CCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhh
Q 036977 258 EKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v 307 (693)
++.-+||+|++.-... ++ +.++++.....|..||+|.++.+.
T Consensus 77 ~~~dvviIDEaq~l~~-~~-------v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDK-EQ-------VVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCH-HH-------HHHHHHHHHHcCCeEEEEecCccc
Confidence 2445899999853210 00 112222224568889999888654
No 236
>PRK10867 signal recognition particle protein; Provisional
Probab=96.53 E-value=0.26 Score=52.97 Aligned_cols=91 Identities=21% Similarity=0.224 Sum_probs=54.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC-ChHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP-DPQKIQDKLASDLGMKFDL---NDSIHHRASRLRE 253 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 253 (693)
.+.+|.++|.+|+||||.+..++.....+. -..+..|+..... ...+-++...+..+.+... ..++........+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 468999999999999999999888765441 1235555554322 2233345556666654321 2345555544444
Q ss_pred HHhcCCcEEEEEeCCC
Q 036977 254 RLKQEKRVLIILDNIW 269 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~ 269 (693)
..+....-++|+|-.-
T Consensus 178 ~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 178 EAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4444233388888754
No 237
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.52 E-value=0.029 Score=55.32 Aligned_cols=30 Identities=30% Similarity=0.543 Sum_probs=26.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
.+..+++|.|++|+|||||++.+.......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 457899999999999999999999887754
No 238
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.19 Score=57.37 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=56.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
.++++++|+.|+||||.+..++...........+..++.... ....+-++...+.++.+.....+..+....+. .+++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-HhcC
Confidence 479999999999999999999987643322235566655432 22445566777777776654455555544444 3443
Q ss_pred CCcEEEEEeCCC
Q 036977 258 EKRVLIILDNIW 269 (693)
Q Consensus 258 ~k~~LlVlDdv~ 269 (693)
+ -++++|-.-
T Consensus 264 -~-D~VLIDTAG 273 (767)
T PRK14723 264 -K-HLVLIDTVG 273 (767)
T ss_pred -C-CEEEEeCCC
Confidence 2 478888765
No 239
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.067 Score=55.10 Aligned_cols=162 Identities=12% Similarity=0.130 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcCC-ceEEEEEecCCCcHHHHHHHHHHHhhcc-------------------CCCCEEEEEEecCCCCh
Q 036977 164 MKVFQDVMEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKKVMED-------------------KLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 164 ~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~~ 223 (693)
....+.+...+..++ ...+.++|+.|+||+++|..+++..--. .|.|. .|+.-...
T Consensus 9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~--- 84 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL-HVIKPEKE--- 84 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecCcC---
Confidence 344556666666555 4678899999999999999988765322 12222 22211100
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeE
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLK----QEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCT 297 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~ 297 (693)
......++. ..+.+.+. .+.+-++|+|+++... ..+.+...+.. -..++.
T Consensus 85 ---------------~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE--------Pp~~t~ 140 (319)
T PRK06090 85 ---------------GKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE--------PAPNCL 140 (319)
T ss_pred ---------------CCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC--------CCCCeE
Confidence 000112221 22222321 1355689999998653 33333222222 334555
Q ss_pred EEEecCC-hhhhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 298 IILTSRS-RDLLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 298 IivTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
+|++|.+ ..+..+....-..+.+.+++.+++.+.+...- . . ....++..++|-|+
T Consensus 141 fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~--~----------------~------~~~~~l~l~~G~p~ 196 (319)
T PRK06090 141 FLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG--I----------------T------VPAYALKLNMGSPL 196 (319)
T ss_pred EEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC--C----------------c------hHHHHHHHcCCCHH
Confidence 5555554 44544434445689999999999988775431 1 1 13466888999998
Q ss_pred c
Q 036977 377 E 377 (693)
Q Consensus 377 a 377 (693)
.
T Consensus 197 ~ 197 (319)
T PRK06090 197 K 197 (319)
T ss_pred H
Confidence 4
No 240
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.49 E-value=0.029 Score=55.73 Aligned_cols=88 Identities=14% Similarity=0.274 Sum_probs=55.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCC-------------------
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKF------------------- 238 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------------- 238 (693)
...++.|.|.+|+|||++|.++....-.+ -..++|++..+ +..++.+.+ ++++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~-~~~g~~~~~~~~~g~l~~~d~~~~~~ 94 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM-AQFGWDVRKYEEEGKFAIVDAFTGGI 94 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH-HHhCCCHHHHhhcCCEEEEecccccc
Confidence 35799999999999999999876654322 46788888765 344444443 2332211
Q ss_pred -----------CCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 036977 239 -----------DLNDSIHHRASRLRERLKQEKRVLIILDNIWT 270 (693)
Q Consensus 239 -----------~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~ 270 (693)
..+.+.++....+.+.+...+.-.+|+|.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 95 GEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 01134455566666666544455788888654
No 241
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.48 E-value=0.0069 Score=66.62 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=56.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH-hc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERL-KQ 257 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~ 257 (693)
-+++.++|++|.||||||.-++++.. ..++-|++|...+...+-..|..++....- + .+
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~~s~---------------l~ad 385 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQNHSV---------------LDAD 385 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhhccc---------------cccC
Confidence 47999999999999999999998753 347889999999988888887766643221 1 12
Q ss_pred CCcEEEEEeCCCCc
Q 036977 258 EKRVLIILDNIWTK 271 (693)
Q Consensus 258 ~k~~LlVlDdv~~~ 271 (693)
.++.-+|+|+++-.
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 47888999998855
No 242
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.48 E-value=0.0058 Score=63.28 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=58.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQE 258 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (693)
..-+.++|.+|+|||.||.++++....+ -..++|+++.. +...+...-. . ... +.... .+.+..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~~~------l~~~l~~~~~-~----~~~-~~~~~-~~~l~~- 246 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTADE------LIEILREIRF-N----NDK-ELEEV-YDLLIN- 246 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEHHH------HHHHHHHHHh-c----cch-hHHHH-HHHhcc-
Confidence 3779999999999999999999998754 23567765543 3333322110 0 001 11111 344433
Q ss_pred CcEEEEEeCCCCc--cCccccCCCCCCcccccccccCCCeEEEEecCCh
Q 036977 259 KRVLIILDNIWTK--LELDAVGIPSGDVDEKDREDDQRRCTIILTSRSR 305 (693)
Q Consensus 259 k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~ 305 (693)
-=|||+||+... ..|..- .+++.+......+..+||||...
T Consensus 247 -~DLLIIDDlG~e~~t~~~~~-----~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 247 -CDLLIIDDLGTEKITEFSKS-----ELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred -CCEEEEeccCCCCCCHHHHH-----HHHHHHHHHHHCCCCEEEECCCC
Confidence 358999999654 222210 02223333334455688888754
No 243
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.47 E-value=0.24 Score=53.27 Aligned_cols=91 Identities=21% Similarity=0.187 Sum_probs=53.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC-ChHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP-DPQKIQDKLASDLGMKFDL---NDSIHHRASRLRE 253 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 253 (693)
++.++.++|.+|+||||.|..++.....+. -..+..+++.... ...+-++.....++.+... ..++........+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 467999999999999999999988864221 1245555554322 2233344556666654322 1344445444444
Q ss_pred HHhcCCcEEEEEeCCC
Q 036977 254 RLKQEKRVLIILDNIW 269 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~ 269 (693)
.......=++|+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4444232388888754
No 244
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.46 E-value=0.0076 Score=56.75 Aligned_cols=104 Identities=27% Similarity=0.279 Sum_probs=56.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
...-+.++|..|+|||.||.++++....+ -..+.|+++ .+++..+-. .... ... ..+.+.+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~~------~~L~~~l~~----~~~~-~~~----~~~~~~l~~ 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFITA------SDLLDELKQ----SRSD-GSY----EELLKRLKR 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEH------HHHHHHHHC----CHCC-TTH----CHHHHHHHT
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEeec------Cceeccccc----cccc-cch----hhhcCcccc
Confidence 34679999999999999999999887653 234566643 344444422 2111 112 123344443
Q ss_pred CCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCChh
Q 036977 258 EKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD 306 (693)
Q Consensus 258 ~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~ 306 (693)
-=||||||+-... +|..- .+++.+......+ .+||||....
T Consensus 109 --~dlLilDDlG~~~~~~~~~~-----~l~~ii~~R~~~~-~tIiTSN~~~ 151 (178)
T PF01695_consen 109 --VDLLILDDLGYEPLSEWEAE-----LLFEIIDERYERK-PTIITSNLSP 151 (178)
T ss_dssp --SSCEEEETCTSS---HHHHH-----CTHHHHHHHHHT--EEEEEESS-H
T ss_pred --ccEecccccceeeecccccc-----cchhhhhHhhccc-CeEeeCCCch
Confidence 4688899987542 23211 1233333333334 4777887654
No 245
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.45 E-value=0.0071 Score=71.42 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=64.0
Q ss_pred ccccchHHHHHHHHHHHhcC---------CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQD 228 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 228 (693)
..++|.+..++.+...+... ...++.++|++|+|||++|+.+....... -...+.++++.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH--
Confidence 45789999999999888531 24578899999999999999999876432 234455666543321111
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 229 KLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
.+-+|.+... ...++ ...+.+.++.....+|+||++...
T Consensus 641 --~~l~g~~~g~-~g~~~-~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 --ARLIGAPPGY-VGYEE-GGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred --HHhcCCCCCc-cCccc-ccHHHHHHHcCCCcEEEEeccccC
Confidence 1122322221 11110 123444444424459999999855
No 246
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.44 E-value=0.0067 Score=57.31 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+-.+++|+|..|+|||||++.++.....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 4478999999999999999999987543
No 247
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.44 E-value=0.009 Score=56.09 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=57.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEE------ecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAE------VTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRL 251 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 251 (693)
.-.+++|+|..|+|||||++.+....... .+.+++. +.+... - ..-+...-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~q~~~-----------------L-SgGq~qrv~l 82 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGITPVYKPQYID-----------------L-SGGELQRVAI 82 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEEEEEEcccCC-----------------C-CHHHHHHHHH
Confidence 45799999999999999999998865442 2333221 111111 1 1122223344
Q ss_pred HHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCC-CeEEEEecCChhhh
Q 036977 252 RERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQR-RCTIILTSRSRDLL 308 (693)
Q Consensus 252 ~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~IivTtR~~~v~ 308 (693)
.+.+.. ++-++++|+..+..+...... +.+.++..... +..||++|++...+
T Consensus 83 aral~~-~p~lllLDEPts~LD~~~~~~----l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 83 AAALLR-NATFYLFDEPSAYLDIEQRLN----AARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred HHHHhc-CCCEEEEECCcccCCHHHHHH----HHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 445554 678999999765533221100 01111111222 25688888887654
No 248
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.0065 Score=57.08 Aligned_cols=120 Identities=23% Similarity=0.181 Sum_probs=61.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----C--------CC-
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----N--------DS- 243 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~--------~~- 243 (693)
+-.+++|+|.+|+|||||++.++..... ..+.++++-....+.. ..+.+.++.-.+. . -+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 4468999999999999999999886543 2344443211100000 0111111100000 0 11
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhh
Q 036977 244 IHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL 308 (693)
Q Consensus 244 ~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~ 308 (693)
-+...-.+.+.+.. ++-++++|+.....+...... +.+.++.....|..||++|++...+
T Consensus 99 G~~qrv~laral~~-~p~illlDEPt~~LD~~~~~~----l~~~l~~~~~~g~tiii~th~~~~~ 158 (173)
T cd03230 99 GMKQRLALAQALLH-DPELLILDEPTSGLDPESRRE----FWELLRELKKEGKTILLSSHILEEA 158 (173)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEeCCccCCCHHHHHH----HHHHHHHHHHCCCEEEEECCCHHHH
Confidence 11222245555555 678999999876543222110 1122222233467799999988754
No 249
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.42 E-value=0.051 Score=59.98 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=72.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc------CCCCEEEEEEecCC---------------C-C-hHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED------KLIDKVVMAEVTQN---------------P-D-PQKIQDKLASDL 234 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~~wv~vs~~---------------~-~-~~~~~~~i~~~l 234 (693)
....|+|+|+.|+|||||.+.+....... +.--.+.|+.-... + . ...-.+..+.++
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 45679999999999999999997765432 01111233322110 0 1 134444555555
Q ss_pred CCCCCCC------CCHHHHHH-HHHHHHhcCCcEEEEEeCCCCccCcccc---CCCCCCcccccccccCCCeEEEEecCC
Q 036977 235 GMKFDLN------DSIHHRAS-RLRERLKQEKRVLIILDNIWTKLELDAV---GIPSGDVDEKDREDDQRRCTIILTSRS 304 (693)
Q Consensus 235 ~~~~~~~------~~~~~~~~-~l~~~L~~~k~~LlVlDdv~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~IivTtR~ 304 (693)
+.+.+.. -+-.+... .+-..+-. ++=++|||+.-+..+.+.+ ...+. .-+|+ ||+.|++
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~-~pNvLiLDEPTNhLDi~s~~aLe~aL~---------~f~Gt-vl~VSHD 495 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQ-PPNLLLLDEPTNHLDIESLEALEEALL---------DFEGT-VLLVSHD 495 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhcc-CCCEEEEcCCCccCCHHHHHHHHHHHH---------hCCCe-EEEEeCC
Confidence 5443321 12222222 33333334 7789999998877554433 22221 34566 8899999
Q ss_pred hhhhhhhcCCCcEEEcCC
Q 036977 305 RDLLCIDMNSQKIFWIDA 322 (693)
Q Consensus 305 ~~v~~~~~~~~~~~~l~~ 322 (693)
+..... .+..++.+++
T Consensus 496 r~Fl~~--va~~i~~~~~ 511 (530)
T COG0488 496 RYFLDR--VATRIWLVED 511 (530)
T ss_pred HHHHHh--hcceEEEEcC
Confidence 987533 2345665554
No 250
>PRK04132 replication factor C small subunit; Provisional
Probab=96.41 E-value=0.034 Score=64.32 Aligned_cols=150 Identities=9% Similarity=-0.008 Sum_probs=89.3
Q ss_pred cCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEe
Q 036977 187 MGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILD 266 (693)
Q Consensus 187 ~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlD 266 (693)
+.++||||+|..++++.-..+.-..++-++.++..+...+ +++++.+....+. .+.+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~---------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKPI---------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc---------------CCCCCEEEEEE
Confidence 7899999999999998643221235777888876666544 3333332111000 01145799999
Q ss_pred CCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCChh-hhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhcc
Q 036977 267 NIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD-LLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCE 343 (693)
Q Consensus 267 dv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 343 (693)
+++... ..+.+...+.. ....+++|++|.+.. +..........+.+.+++.++-.+.+...+...
T Consensus 638 EaD~Lt~~AQnALLk~lEe--------p~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~E---- 705 (846)
T PRK04132 638 EADALTQDAQQALRRTMEM--------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE---- 705 (846)
T ss_pred CcccCCHHHHHHHHHHhhC--------CCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhc----
Confidence 999763 33333222211 234566666655543 322222334589999999998888877765422
Q ss_pred ccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 344 SMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
...-..+....|++.++|-+-
T Consensus 706 ------------gi~i~~e~L~~Ia~~s~GDlR 726 (846)
T PRK04132 706 ------------GLELTEEGLQAILYIAEGDMR 726 (846)
T ss_pred ------------CCCCCHHHHHHHHHHcCCCHH
Confidence 111124567888999998765
No 251
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.41 E-value=0.12 Score=50.64 Aligned_cols=183 Identities=12% Similarity=0.086 Sum_probs=101.1
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhcc----CCCCEEEEEEec----------CC
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMED----KLIDKVVMAEVT----------QN 220 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs----------~~ 220 (693)
.....+.++++....+......+..+...++|++|.||-|.+..+.++.-.- -.-+.+-|.+-+ ++
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred chhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc
Confidence 3445567788888888877666678899999999999999998888875321 112233343222 22
Q ss_pred C-----------ChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcE-EEEEeCCCCcc--CccccCCCCCCccc
Q 036977 221 P-----------DPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRV-LIILDNIWTKL--ELDAVGIPSGDVDE 286 (693)
Q Consensus 221 ~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~-LlVlDdv~~~~--~~~~l~~~~~~~~~ 286 (693)
. .-..+.+++++.+....+. . ...++.| ++|+-.+++.. .-..++-....
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~qi-----------e--~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk--- 153 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQI-----------E--TQGQRPFKVVVINEADELTRDAQHALRRTMEK--- 153 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcch-----------h--hccccceEEEEEechHhhhHHHHHHHHHHHHH---
Confidence 1 1244555555555332211 0 0012344 44455544331 11111111000
Q ss_pred ccccccCCCeEEEEecCChhhh-hhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHH
Q 036977 287 KDREDDQRRCTIILTSRSRDLL-CIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIEL 365 (693)
Q Consensus 287 ~~~~~~~~~~~IivTtR~~~v~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (693)
-...+|+|+...+..-. ...-..--.+.+...+.+|-...+.+..-.. ....-.+++.
T Consensus 154 -----Ys~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE----------------~l~lp~~~l~ 212 (351)
T KOG2035|consen 154 -----YSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKE----------------GLQLPKELLK 212 (351)
T ss_pred -----HhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHh----------------cccCcHHHHH
Confidence 23456666544333211 1111122377888999999999998887543 1222268899
Q ss_pred HHhhhcCCC
Q 036977 366 KVFPKLHSL 374 (693)
Q Consensus 366 ~I~~~c~gl 374 (693)
.|+++++|.
T Consensus 213 rIa~kS~~n 221 (351)
T KOG2035|consen 213 RIAEKSNRN 221 (351)
T ss_pred HHHHHhccc
Confidence 999998873
No 252
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.40 E-value=0.014 Score=57.22 Aligned_cols=42 Identities=26% Similarity=0.308 Sum_probs=33.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
-.++.|.|.+|+||||+|.+++.....+ -..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 5789999999999999999998876543 34678887765553
No 253
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.39 E-value=0.0056 Score=71.82 Aligned_cols=106 Identities=14% Similarity=0.232 Sum_probs=61.9
Q ss_pred ccccchHHHHHHHHHHHhc---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKD---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQD 228 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 228 (693)
..++|.+..++.+.+.+.. ....++.++|++|+|||.||+.+++..-.. ....+-+++++-....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhh----
Confidence 4678999999999888742 124578999999999999999998876422 2223333433321111
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 229 KLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
.+.+-+|.+... .... ....+.+.++.....+|+||++...
T Consensus 640 ~~~~l~g~~~gy-vg~~-~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPGY-VGYG-EGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCCc-cccc-ccchHHHHHHhCCCcEEEEechhhc
Confidence 111122332221 1111 1123445555545679999999754
No 254
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.38 E-value=0.0099 Score=70.01 Aligned_cols=106 Identities=18% Similarity=0.262 Sum_probs=61.7
Q ss_pred ccccchHHHHHHHHHHHhc--------C-CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKD--------D-KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQD 228 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~--------~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 228 (693)
..++|.+..++.+...+.. + ...++.++|+.|+|||++|+.+++..... -...+.++++.-....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~~---- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEKH---- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhhh----
Confidence 4577999998888888752 1 12578899999999999999999876432 2234555555422111
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 229 KLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
.+.+-+|.+... ...+. ...+.+.++....-+|+|||+...
T Consensus 642 ~~~~LiG~~pgy-~g~~~-~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 SVSRLVGAPPGY-VGYEE-GGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred hHHHHhCCCCcc-cccch-hHHHHHHHHhCCCCeEEEeehhhC
Confidence 111223332221 11111 122444444423469999999754
No 255
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.36 E-value=0.013 Score=58.87 Aligned_cols=123 Identities=16% Similarity=0.164 Sum_probs=66.5
Q ss_pred HHHHHHh-cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCC--------CCC
Q 036977 169 DVMEALK-DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGM--------KFD 239 (693)
Q Consensus 169 ~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~--------~~~ 239 (693)
.++..+. .....-++|+|.+|+|||||.+.++...... .+.+++.-..-. ..+-..++...... ..+
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~-~~d~~~ei~~~~~~~~q~~~~~r~~ 175 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVG-IVDERSEIAGCVNGVPQHDVGIRTD 175 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEee-cchhHHHHHHHhccccccccccccc
Confidence 3333443 3345789999999999999999999887643 333333211100 00111223222211 111
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhh
Q 036977 240 LNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 240 ~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v 307 (693)
....... ...+...+....+-++++|++-..+.+..+... ...|..||+||+...+
T Consensus 176 v~~~~~k-~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~-----------~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 176 VLDGCPK-AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEA-----------LHAGVSIIATAHGRDV 231 (270)
T ss_pred ccccchH-HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHH-----------HhCCCEEEEEechhHH
Confidence 1111111 333444554347889999998765544433221 2247789999998766
No 256
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.36 E-value=0.011 Score=54.45 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=25.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
+-..+.++|++|.|||||.+.+|...+..
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt 55 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT 55 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC
Confidence 34688999999999999999999998764
No 257
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.36 E-value=0.014 Score=57.46 Aligned_cols=123 Identities=16% Similarity=0.173 Sum_probs=72.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecC-----CCChHHHHHHHHHHhCCCCCC------CCCHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQ-----NPDPQKIQDKLASDLGMKFDL------NDSIHH 246 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~------~~~~~~ 246 (693)
+..+++|||.+|+||||+++.+..-.... .+.+++.-.+ .....+-..+++..+|.+.+. ..+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 45789999999999999999999887653 3333333211 122334456677777754321 122222
Q ss_pred HH-HHHHHHHhcCCcEEEEEeCCCCccCc---cccCCCCCCcccccccccCCCeEEEEecCChhhhhh
Q 036977 247 RA-SRLRERLKQEKRVLIILDNIWTKLEL---DAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLCI 310 (693)
Q Consensus 247 ~~-~~l~~~L~~~k~~LlVlDdv~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~~ 310 (693)
++ -.+.+.|.- ++-++|.|+.-+..+. .++..-+.+ .+...|...+..|++-.++..
T Consensus 115 rQRi~IARALal-~P~liV~DEpvSaLDvSiqaqIlnLL~d------lq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 115 RQRIGIARALAL-NPKLIVADEPVSALDVSVQAQILNLLKD------LQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhHHHHHHHhh-CCcEEEecCchhhcchhHHHHHHHHHHH------HHHHhCCeEEEEEEEHHhhhh
Confidence 22 245555655 7899999997665332 111000000 013346668888999888654
No 258
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.027 Score=59.58 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=57.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccC--CCCEEEEEEecCCC-ChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDK--LIDKVVMAEVTQNP-DPQKIQDKLASDLGMKFDLNDSIHHRASRLRER 254 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (693)
..++|.++|+.|+||||.+..++....... .-..+..+++.... ....-++..++.++.+........+....+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 457999999999999999999988765321 12356666665432 223336666777777655444555554444432
Q ss_pred HhcCCcEEEEEeCCC
Q 036977 255 LKQEKRVLIILDNIW 269 (693)
Q Consensus 255 L~~~k~~LlVlDdv~ 269 (693)
. +.-++++|.+-
T Consensus 253 -~--~~DlVLIDTaG 264 (388)
T PRK12723 253 -K--DFDLVLVDTIG 264 (388)
T ss_pred -C--CCCEEEEcCCC
Confidence 3 45688899874
No 259
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.33 E-value=0.0015 Score=76.39 Aligned_cols=98 Identities=23% Similarity=0.294 Sum_probs=65.7
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC------CCccccccceeccCCCC----cccccCCCCCcCEe
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD------SLEEVLHLEELNAKEEH----IGPLFPRLSWLRLI 619 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~------~l~~l~~L~~L~l~~~~----l~~~~~~L~~L~~L 619 (693)
++.|+.|++.+|.++. .+|..+++|-+||+|+++++. ++.+|..|.+|++..+. ++.+...|++|++|
T Consensus 570 m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred CcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 4567777777766665 579999999999999997774 22456678888887632 33446668899999
Q ss_pred ecCCCcCcc---cccccccCCCCcCEEecccccc
Q 036977 620 DLPKLKRFY---NFTGNIIELPELRYLTIENCPD 650 (693)
Q Consensus 620 ~L~~c~~l~---~LP~~i~~L~~L~~L~i~~C~~ 650 (693)
.+.. .... .+=..+.+|.+|+.|.+..+..
T Consensus 648 ~l~~-s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 648 RLPR-SALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred Eeec-cccccchhhHHhhhcccchhhheeecchh
Confidence 8875 3311 1112344667777777766553
No 260
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.28 E-value=0.48 Score=49.86 Aligned_cols=90 Identities=24% Similarity=0.293 Sum_probs=55.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEec-CCCChHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVT-QNPDPQKIQDKLASDLGMKFDL---NDSIHHRASRLRE 253 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 253 (693)
.+.||-.+|.-|+||||-+..+++..+.++ ..+.-|++. ..+...+=++.+..+++.+.-. ..++.+.+..-.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~--~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKG--KKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcC--CceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 468999999999999999999999888642 233333332 1233444467788888776433 2344444444444
Q ss_pred HHhcCCcEEEEEeCCC
Q 036977 254 RLKQEKRVLIILDNIW 269 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~ 269 (693)
..+....=++|+|-.-
T Consensus 177 ~ak~~~~DvvIvDTAG 192 (451)
T COG0541 177 KAKEEGYDVVIVDTAG 192 (451)
T ss_pred HHHHcCCCEEEEeCCC
Confidence 4443233466667654
No 261
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.27 E-value=0.0026 Score=72.47 Aligned_cols=70 Identities=26% Similarity=0.276 Sum_probs=40.9
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCc--------cccccceeccCCCC---cccc-------cC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLE--------EVLHLEELNAKEEH---IGPL-------FP 611 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~--------~l~~L~~L~l~~~~---l~~~-------~~ 611 (693)
|+||.+|+|+++.- . ...+++.|++|++|.+.+.+-.. .|.+|+.||++... .+.+ -.
T Consensus 172 FpNL~sLDIS~TnI-~---nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 172 FPNLRSLDISGTNI-S---NLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM 247 (699)
T ss_pred cCccceeecCCCCc-c---CcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcc
Confidence 66777777777542 1 22566777777777766554221 56667777776521 1111 33
Q ss_pred CCCCcCEeecCC
Q 036977 612 RLSWLRLIDLPK 623 (693)
Q Consensus 612 ~L~~L~~L~L~~ 623 (693)
.|++|+.||.++
T Consensus 248 ~LpeLrfLDcSg 259 (699)
T KOG3665|consen 248 VLPELRFLDCSG 259 (699)
T ss_pred cCccccEEecCC
Confidence 467777777776
No 262
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.0057 Score=54.78 Aligned_cols=28 Identities=46% Similarity=0.520 Sum_probs=25.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccC
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDK 207 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 207 (693)
--|+|.|++|+||||+++.+.+..+.++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 4589999999999999999999988764
No 263
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.27 E-value=0.03 Score=57.57 Aligned_cols=91 Identities=19% Similarity=0.329 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHHhc----CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCC
Q 036977 162 SRMKVFQDVMEALKD----DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMK 237 (693)
Q Consensus 162 gR~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 237 (693)
+|........+++.+ ...+-+.++|..|+|||.||.++++....+ -..+.|++++ +++..+....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK--GVSSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEEHH------HHHHHHHHHHhcC
Confidence 566666666666642 134678999999999999999999998743 2335555543 4555555544211
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 238 FDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 238 ~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
+. ....+.++ +-=||||||+...
T Consensus 207 -----~~----~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 207 -----SV----KEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred -----cH----HHHHHHhc--CCCEEEEecCCCc
Confidence 11 22333343 3569999998643
No 264
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.25 E-value=0.013 Score=68.98 Aligned_cols=106 Identities=16% Similarity=0.251 Sum_probs=62.5
Q ss_pred ccccchHHHHHHHHHHHhcC---------CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQD 228 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 228 (693)
..++|.+..++.+...+... +...+.++|+.|+|||+||+.+++..-.. -...+-++.++-.....+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 56789999999998887421 23467799999999999999999875322 123445555543222221
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 229 KLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
.+-+|.+... ...+ ....+.+.++.....+++||+++..
T Consensus 585 --~~l~g~~~gy-vg~~-~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 --SKLIGSPPGY-VGYN-EGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHhcCCCCcc-cCcC-ccchHHHHHHhCCCeEEEECChhhC
Confidence 1122322111 1111 1123455555523469999999855
No 265
>PTZ00035 Rad51 protein; Provisional
Probab=96.25 E-value=0.036 Score=57.78 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=57.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhc---c-CCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC---------CCCHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVME---D-KLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL---------NDSIH 245 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 245 (693)
..++.|+|.+|+|||||+..++-..+. . ..-..++|++....++...+ ..+++.++..... ..+.+
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCHH
Confidence 578999999999999999998765441 1 11245789998887777763 4456665543211 13333
Q ss_pred HHHHH---HHHHHhcCCcEEEEEeCCCC
Q 036977 246 HRASR---LRERLKQEKRVLIILDNIWT 270 (693)
Q Consensus 246 ~~~~~---l~~~L~~~k~~LlVlDdv~~ 270 (693)
+.... +...+...+--|||+|.+..
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 33333 33334444566899998754
No 266
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.093 Score=57.57 Aligned_cols=141 Identities=17% Similarity=0.189 Sum_probs=76.0
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLK 256 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (693)
+.++-|..+|++|.|||++|+++++..... | +.++.. +++.. .. -+.+..+..+.+.=+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp----EL~sk---~v-------GeSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP----ELFSK---YV-------GESERAIREVFRKAR 524 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH----HHHHH---hc-------CchHHHHHHHHHHHh
Confidence 357889999999999999999999997765 4 222211 11111 11 112223333333333
Q ss_pred cCCcEEEEEeCCCCccCccccCCCC----CCcccccccc----cCCCeEEEEecCChhhh-hhhcC---CCcEEEcCCCC
Q 036977 257 QEKRVLIILDNIWTKLELDAVGIPS----GDVDEKDRED----DQRRCTIILTSRSRDLL-CIDMN---SQKIFWIDALS 324 (693)
Q Consensus 257 ~~k~~LlVlDdv~~~~~~~~l~~~~----~~~~~~~~~~----~~~~~~IivTtR~~~v~-~~~~~---~~~~~~l~~L~ 324 (693)
.--+++|.||+++....-.. +... .-+.+++.+. ...+--||-.|...+.. ...+. .+..+.+..-+
T Consensus 525 ~~aP~IiFfDEiDsi~~~R~-g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGSRG-GSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred hcCCeEEehhhHHhHhhccC-CCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 33679999999876522110 0000 0011111111 12233344444444432 11233 35688888888
Q ss_pred HHHHHHHHHHhhhhh
Q 036977 325 KEEALHLAKLQHLEI 339 (693)
Q Consensus 325 ~~ea~~Lf~~~~~~~ 339 (693)
.+...++|..++.+.
T Consensus 604 ~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 604 LEARLEILKQCAKKM 618 (693)
T ss_pred HHHHHHHHHHHHhcC
Confidence 899999999988643
No 267
>PRK14974 cell division protein FtsY; Provisional
Probab=96.23 E-value=0.063 Score=55.73 Aligned_cols=90 Identities=20% Similarity=0.192 Sum_probs=51.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC--hHHHHHHHHHHhCCCCCC---CCCHHHHH-HHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD--PQKIQDKLASDLGMKFDL---NDSIHHRA-SRL 251 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~---~~~~~~~~-~~l 251 (693)
++.+|.++|++|+||||++..++...... .+ .++.+... .+. ...-++.....++.+... ..+..... ..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46899999999999999999998876643 23 34444432 222 233355667777754322 12332222 222
Q ss_pred HHHHhcCCcEEEEEeCCCCc
Q 036977 252 RERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 252 ~~~L~~~k~~LlVlDdv~~~ 271 (693)
...-.. ..-++++|..-..
T Consensus 216 ~~~~~~-~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKAR-GIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhC-CCCEEEEECCCcc
Confidence 222222 2338999987533
No 268
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.22 E-value=0.025 Score=56.12 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=57.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----------------
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL----------------- 240 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------------- 240 (693)
...++.|+|.+|+|||+++.++......+ -..++|++..+. ..++.+.+ .+++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 35799999999999999999997654322 357889988654 34444443 333322110
Q ss_pred ---CCCHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 036977 241 ---NDSIHHRASRLRERLKQEKRVLIILDNIW 269 (693)
Q Consensus 241 ---~~~~~~~~~~l~~~L~~~k~~LlVlDdv~ 269 (693)
..+.+.....+.+.+...+.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 12335566777777765456789999976
No 269
>PRK06547 hypothetical protein; Provisional
Probab=96.22 E-value=0.0073 Score=56.46 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=29.4
Q ss_pred HHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 169 DVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+...+......+|+|.|++|+||||+|+.+.+...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445567788999999999999999999998754
No 270
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.22 E-value=0.0088 Score=68.87 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=61.5
Q ss_pred ccccchHHHHHHHHHHHhc---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKD---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQD 228 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 228 (693)
..++|.++.++.+...+.. .....+.++|++|+|||++|+.++..... ..+.+++++.....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----
Confidence 3467889988888888752 12457899999999999999999887631 23444554332211
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 229 KLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
.+.+-+|.+... ... .....+.+.++.....+++||+++..
T Consensus 529 ~~~~LiG~~~gy-vg~-~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 529 TVSRLIGAPPGY-VGF-DQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred cHHHHcCCCCCc-ccc-cccchHHHHHHhCCCcEEEeccHhhh
Confidence 122223332211 110 11123444454434579999999865
No 271
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.20 E-value=0.025 Score=58.83 Aligned_cols=92 Identities=28% Similarity=0.373 Sum_probs=57.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccC----CCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC---------CCCH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDK----LIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL---------NDSI 244 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 244 (693)
...++-|+|.+|+|||+++.+++....... .-..++|++..+.++...+. ++++.++...+. ..+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCCH
Confidence 357889999999999999999987643221 11479999999888877754 445555543211 1111
Q ss_pred H---HHHHHHHHHHhc-CCcEEEEEeCCCC
Q 036977 245 H---HRASRLRERLKQ-EKRVLIILDNIWT 270 (693)
Q Consensus 245 ~---~~~~~l~~~L~~-~k~~LlVlDdv~~ 270 (693)
+ .....+...+.. .+--+||+|-+..
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 1 223344444443 2445888888653
No 272
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.18 E-value=0.0061 Score=66.30 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=41.8
Q ss_pred ccccchHHHHHHHHHHHh------cCCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 158 EAFDSRMKVFQDVMEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
..++|-++.+++|++.|. +.+-+++.++|++|+||||||+.+++-...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 357899999999999982 446689999999999999999999997764
No 273
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.17 E-value=0.031 Score=58.15 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=59.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhcc----CCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC---------CCCHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMED----KLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL---------NDSIH 245 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 245 (693)
..++-|+|.+|+|||+|+..++-..... ..-..++|++....|..+.+ .+|++.++...+. ..+.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCHH
Confidence 5788899999999999999888653321 11236999999999988875 5567776654321 12333
Q ss_pred HHHHHH---HHHHhcCCcEEEEEeCCCC
Q 036977 246 HRASRL---RERLKQEKRVLIILDNIWT 270 (693)
Q Consensus 246 ~~~~~l---~~~L~~~k~~LlVlDdv~~ 270 (693)
+....+ ...+...+.-|||+|-+-.
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 333322 2334444567899998754
No 274
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0022 Score=66.29 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=52.9
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCc--------cccccceeccCCCCcccc----------cC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLE--------EVLHLEELNAKEEHIGPL----------FP 611 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~--------~l~~L~~L~l~~~~l~~~----------~~ 611 (693)
|++|..|.+.+-++.... .....-+..|+.|+|++...+. .||.|+.|++.++.++++ ..
T Consensus 221 fPsl~~L~L~~N~~~~~~--~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIK--ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred CCcHHHhhhhccccccee--cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 566666666665322211 1222336667777776665433 566777777777666555 24
Q ss_pred CCCCcCEeecCCCcCcccccc--cccCCCCcCEEecc
Q 036977 612 RLSWLRLIDLPKLKRFYNFTG--NIIELPELRYLTIE 646 (693)
Q Consensus 612 ~L~~L~~L~L~~c~~l~~LP~--~i~~L~~L~~L~i~ 646 (693)
.+++|++|++.. +.+...|. ++..++||++|.+.
T Consensus 299 ~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 299 TFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccceeeeccc-Cccccccccchhhccchhhhhhcc
Confidence 466777777776 44544442 34455666666554
No 275
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.17 E-value=0.012 Score=60.51 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=26.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
..+..++|+|++|.|||.+|+.++++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 356899999999999999999999997653
No 276
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.016 Score=54.38 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.-.+++|+|.+|.|||||.+.++.....
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 4578999999999999999999987553
No 277
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.16 E-value=0.029 Score=54.82 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=28.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP 221 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 221 (693)
+|+|.|.+|+||||+|+.+.........-..+..++...-+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999887531101234455554433
No 278
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.16 E-value=0.021 Score=59.01 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=57.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc---cC-CCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC---------CCCH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME---DK-LIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL---------NDSI 244 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 244 (693)
...++.|+|.+|+|||||+..++..... .+ .-..++|++....++... +..+++.++..... ..+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCCh
Confidence 3579999999999999999998864321 11 123679999988877776 34455655543211 1223
Q ss_pred HHH---HHHHHHHHhcCCcEEEEEeCCCC
Q 036977 245 HHR---ASRLRERLKQEKRVLIILDNIWT 270 (693)
Q Consensus 245 ~~~---~~~l~~~L~~~k~~LlVlDdv~~ 270 (693)
++. ...+...+...+.-|+|+|.+-.
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 333 22333334444556888888753
No 279
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.15 E-value=0.014 Score=52.88 Aligned_cols=106 Identities=27% Similarity=0.336 Sum_probs=57.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
.-.+++|+|.+|.|||||++.+...... ..+.+|++-.. .++.-..- ..-+...-.+.+.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~-------------~i~~~~~l-S~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTV-------------KIGYFEQL-SGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeE-------------EEEEEccC-CHHHHHHHHHHHHHhc
Confidence 4478999999999999999999887543 23444432100 00000001 1122223334455555
Q ss_pred CCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhh
Q 036977 258 EKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL 308 (693)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~ 308 (693)
++-++++|+.....+...... +.+.++.. +..||++|++...+
T Consensus 88 -~p~illlDEP~~~LD~~~~~~----l~~~l~~~---~~til~~th~~~~~ 130 (144)
T cd03221 88 -NPNLLLLDEPTNHLDLESIEA----LEEALKEY---PGTVILVSHDRYFL 130 (144)
T ss_pred -CCCEEEEeCCccCCCHHHHHH----HHHHHHHc---CCEEEEEECCHHHH
Confidence 678999999875533222110 11112221 24688888887654
No 280
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.15 E-value=0.051 Score=62.07 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=72.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEK 259 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (693)
+-+.++|++|+|||++|+.+++..... | +.++.+. +.... .+ .........+. ..+...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~------~~~~~---~g------~~~~~~~~~f~-~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD------FVEMF---VG------VGASRVRDMFE-QAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH------hHHhh---hc------ccHHHHHHHHH-HHHhcC
Confidence 458999999999999999998876542 2 2222221 11100 00 11111222222 223336
Q ss_pred cEEEEEeCCCCccCccc--cCCCCCC----cccccc----cccCCCeEEEEecCChhhhhhhc----CCCcEEEcCCCCH
Q 036977 260 RVLIILDNIWTKLELDA--VGIPSGD----VDEKDR----EDDQRRCTIILTSRSRDLLCIDM----NSQKIFWIDALSK 325 (693)
Q Consensus 260 ~~LlVlDdv~~~~~~~~--l~~~~~~----~~~~~~----~~~~~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~ 325 (693)
+++|++|+++....-.. +...... +.+++. .....+.-+|.||.......... .....+.+...+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 79999999976521100 0000000 000000 00234555666887766532222 1245788888888
Q ss_pred HHHHHHHHHhhhh
Q 036977 326 EEALHLAKLQHLE 338 (693)
Q Consensus 326 ~ea~~Lf~~~~~~ 338 (693)
++..+++..+...
T Consensus 325 ~~R~~Il~~~~~~ 337 (644)
T PRK10733 325 RGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHhhc
Confidence 8888888877653
No 281
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.14 E-value=0.036 Score=52.02 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=47.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC-ChHHHHHHHHHHhCCCCC---CCCCHHHHH-HHHHHHH
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP-DPQKIQDKLASDLGMKFD---LNDSIHHRA-SRLRERL 255 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~-~~l~~~L 255 (693)
++.++|++|+||||++..++...... -..++.++..... ...+.+...+...+.+.. ...+..... ..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999887654 1245555544321 223334444444443211 112333333 3333333
Q ss_pred hcCCcEEEEEeCCCC
Q 036977 256 KQEKRVLIILDNIWT 270 (693)
Q Consensus 256 ~~~k~~LlVlDdv~~ 270 (693)
.. ..-++|+|..-.
T Consensus 80 ~~-~~d~viiDt~g~ 93 (173)
T cd03115 80 EE-NFDVVIVDTAGR 93 (173)
T ss_pred hC-CCCEEEEECccc
Confidence 33 333666787543
No 282
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.14 E-value=0.031 Score=56.66 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=23.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..+.+|+|.|.+|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999988866654
No 283
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0082 Score=56.72 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+-.+++|+|.+|+|||||++.++....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986643
No 284
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.11 Score=58.71 Aligned_cols=183 Identities=14% Similarity=0.084 Sum_probs=105.0
Q ss_pred ccccchH---HHHHHHHHHHhcC---------CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHH
Q 036977 158 EAFDSRM---KVFQDVMEALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQK 225 (693)
Q Consensus 158 ~~~~gR~---~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 225 (693)
.++.|-+ +++.++++.|.+. -++=+.++|++|.|||-||++++.+..+- | ++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP--F-----~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--F-----FSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc--e-----eeechH-----
Confidence 3444544 5556666666542 25678899999999999999999987764 3 333321
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccc---cCCCCCC----cccccccc----cCC
Q 036977 226 IQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDA---VGIPSGD----VDEKDRED----DQR 294 (693)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~---l~~~~~~----~~~~~~~~----~~~ 294 (693)
+.++.+... ...++..+...-+...++++.+|+++...--.. ....-.. +.|++-+. ...
T Consensus 379 ---EFvE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 111111111 123444555555555788999998875532111 0010000 11121111 223
Q ss_pred CeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhh
Q 036977 295 RCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPK 370 (693)
Q Consensus 295 ~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 370 (693)
+--++-+|+..++++... ..+..+.++.-+.....++|.-++... +.......++. |+..
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~---------------~~~~e~~dl~~-~a~~ 513 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK---------------KLDDEDVDLSK-LASL 513 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc---------------CCCcchhhHHH-HHhc
Confidence 444566676666653221 124578888888888999998887643 12234455666 8888
Q ss_pred cCCCccc
Q 036977 371 LHSLKLE 377 (693)
Q Consensus 371 c~glPLa 377 (693)
..|++-|
T Consensus 514 t~gf~ga 520 (774)
T KOG0731|consen 514 TPGFSGA 520 (774)
T ss_pred CCCCcHH
Confidence 8888876
No 285
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.12 E-value=0.043 Score=55.08 Aligned_cols=89 Identities=24% Similarity=0.330 Sum_probs=58.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHH-hCCC-CCCCCCHHHH---HHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASD-LGMK-FDLNDSIHHR---ASRLR 252 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~---~~~l~ 252 (693)
.-+++=|+|+.|+||||+|.+++-..+.. -..++|++.-..+++..+.. +... +..- ...+.+.++. +..+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 34789999999999999999988877654 34899999999998877543 3333 2211 1112333433 33333
Q ss_pred HHHhcCCcEEEEEeCCCC
Q 036977 253 ERLKQEKRVLIILDNIWT 270 (693)
Q Consensus 253 ~~L~~~k~~LlVlDdv~~ 270 (693)
+.... +--|+|+|.+-.
T Consensus 136 ~~~~~-~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAE-KIDLLVVDSVAA 152 (279)
T ss_pred HhccC-CCCEEEEecCcc
Confidence 33333 357999998753
No 286
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.10 E-value=0.00092 Score=68.03 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred hhhcccccccccccCccccccccCCCcc--------cccCCCCCCcccccCcceeeecCCCCCCcCCCch-hhcCCCCCC
Q 036977 510 STIQKCYEEMIGFRDIKDLQLSHFPRLQ--------EIWHGQALPVSFFNNLRELVVDDCTNMSSAIPAN-LLRCLNNLR 580 (693)
Q Consensus 510 ~~~~~l~~l~~~~~~l~~l~~~~~~~L~--------~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~-~l~~L~~L~ 580 (693)
..+.+++++++++|.++.+....|..|. .-...+.+|.+.|.+|..|......-.+..-.+. .+..|++|.
T Consensus 88 ~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~ 167 (498)
T KOG4237|consen 88 KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLS 167 (498)
T ss_pred cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcc
Q ss_pred EEEecCCCCCc---------------------------------------------------------------------
Q 036977 581 YLEVRNCDSLE--------------------------------------------------------------------- 591 (693)
Q Consensus 581 ~L~l~~c~~l~--------------------------------------------------------------------- 591 (693)
.|.+.+...=.
T Consensus 168 lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~ 247 (498)
T KOG4237|consen 168 LLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS 247 (498)
T ss_pred hhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Q ss_pred ------------------------cccccceeccCCCCcccc----cCCCCCcCEeecCCCcCccccccccc-CCCCcCE
Q 036977 592 ------------------------EVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNII-ELPELRY 642 (693)
Q Consensus 592 ------------------------~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i~-~L~~L~~ 642 (693)
.|++|+.|++++|.+..+ |..+.+|+.|.|.. ++++.+-.++. .+..|+.
T Consensus 248 ~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~t 326 (498)
T KOG4237|consen 248 LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKT 326 (498)
T ss_pred HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhcccccee
Q ss_pred Eecccccccccc-cccccccceee
Q 036977 643 LTIENCPDMETF-ISNSTSVLHMT 665 (693)
Q Consensus 643 L~i~~C~~L~~l-p~~~~~l~~l~ 665 (693)
|++++. ++..+ |..+..+..|.
T Consensus 327 L~L~~N-~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 327 LSLYDN-QITTVAPGAFQTLFSLS 349 (498)
T ss_pred eeecCC-eeEEEecccccccceee
No 287
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.08 E-value=0.033 Score=55.61 Aligned_cols=93 Identities=22% Similarity=0.326 Sum_probs=58.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHHHhCCC------CCCCCCHH-----
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLASDLGMK------FDLNDSIH----- 245 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~------~~~~~~~~----- 245 (693)
+-+-++|+|.+|+|||||++.+++..+.+ +-+.++++-+.+... ..++.+++...=..+ .....+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34678999999999999999999998765 224567777777654 455555554421111 00011111
Q ss_pred -HHHHHHHHHHh-c-CCcEEEEEeCCCCc
Q 036977 246 -HRASRLRERLK-Q-EKRVLIILDNIWTK 271 (693)
Q Consensus 246 -~~~~~l~~~L~-~-~k~~LlVlDdv~~~ 271 (693)
...-.+-+++. + ++++|+++||+...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 12334556664 2 58999999997644
No 288
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.08 E-value=0.0067 Score=42.22 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=24.2
Q ss_pred ccceeccCCCCcccc---cCCCCCcCEeecCCCcCccccc
Q 036977 595 HLEELNAKEEHIGPL---FPRLSWLRLIDLPKLKRFYNFT 631 (693)
Q Consensus 595 ~L~~L~l~~~~l~~~---~~~L~~L~~L~L~~c~~l~~LP 631 (693)
+|++|+++++++.++ +++|++|++|+++++ .+..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 455556655544444 788999999999995 577665
No 289
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.015 Score=58.00 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=49.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhcc--CCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMED--KLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLK 256 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (693)
.++|.++|++|.|||+|.++++++..++ +.|.....+.++.. .+..+....-| .....+.+.+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsESg------KlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSESG------KLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhhhh------hHHHHHHHHHHHHHh
Confidence 4899999999999999999999998765 34444444444322 22222211111 223344555566665
Q ss_pred cCCcE-EEEEeCCCCc
Q 036977 257 QEKRV-LIILDNIWTK 271 (693)
Q Consensus 257 ~~k~~-LlVlDdv~~~ 271 (693)
..+.+ .+.+|+|.+.
T Consensus 247 d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVESL 262 (423)
T ss_pred CCCcEEEEEeHHHHHH
Confidence 53333 4557887754
No 290
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.07 E-value=0.026 Score=55.77 Aligned_cols=127 Identities=21% Similarity=0.282 Sum_probs=69.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCC---C--------------CEEEEEEec----------------CC----
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKL---I--------------DKVVMAEVT----------------QN---- 220 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F--------------~~~~wv~vs----------------~~---- 220 (693)
+-.+++|+|++|+|||||.+.++.-.+.... . ..+.|+.-+ ..
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 4579999999999999999999986553210 0 012222111 00
Q ss_pred ----CCh--HHHHHHHHHHhCCCC------CCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCccccc
Q 036977 221 ----PDP--QKIQDKLASDLGMKF------DLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKD 288 (693)
Q Consensus 221 ----~~~--~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~ 288 (693)
.+. .+.....++.++... ..-..-+.....+.+.|.+ +.=+++||+.-+..+...-.. +.+++
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ-~~~iLLLDEPTs~LDi~~Q~e----vl~ll 181 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ-ETPILLLDEPTSHLDIAHQIE----VLELL 181 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc-CCCEEEeCCCccccCHHHHHH----HHHHH
Confidence 111 223344455554322 2212223334456666666 678999999765533221100 11122
Q ss_pred cccc-CCCeEEEEecCChhhhh
Q 036977 289 REDD-QRRCTIILTSRSRDLLC 309 (693)
Q Consensus 289 ~~~~-~~~~~IivTtR~~~v~~ 309 (693)
+... ..|..||+++++-+.|.
T Consensus 182 ~~l~~~~~~tvv~vlHDlN~A~ 203 (258)
T COG1120 182 RDLNREKGLTVVMVLHDLNLAA 203 (258)
T ss_pred HHHHHhcCCEEEEEecCHHHHH
Confidence 2223 45778999999998874
No 291
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.06 E-value=0.0037 Score=60.81 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998853
No 292
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.04 E-value=0.041 Score=57.07 Aligned_cols=57 Identities=30% Similarity=0.396 Sum_probs=42.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhcc----CCCCEEEEEEecCCCChHHHHHHHHHHhCC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMED----KLIDKVVMAEVTQNPDPQKIQDKLASDLGM 236 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (693)
..++-|+|.+|+||||++.+++...... ..-..++||+..+.++...+. ++++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 5788999999999999999998775421 011379999999888877754 44555554
No 293
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.011 Score=54.43 Aligned_cols=121 Identities=19% Similarity=0.214 Sum_probs=63.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
+-.+++|+|..|.|||||++.+...... ..+.+++.-....... .......++.-.+- ..-+...-.+...+..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~--~~~~~~~i~~~~ql-S~G~~~r~~l~~~l~~ 97 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLP--LEELRRRIGYVPQL-SGGQRQRVALARALLL 97 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCC--HHHHHhceEEEeeC-CHHHHHHHHHHHHHhc
Confidence 3478999999999999999999876543 3455554332111100 01111112211111 1122233345555555
Q ss_pred CCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhhh
Q 036977 258 EKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLC 309 (693)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~ 309 (693)
.+-++++|+.....+...... +.+.+......+..++++|++...+.
T Consensus 98 -~~~i~ilDEp~~~lD~~~~~~----l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 98 -NPDLLLLDEPTSGLDPASRER----LLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred -CCCEEEEeCCCcCCCHHHHHH----HHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 578999999876543222100 11111211223567999999887653
No 294
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.01 E-value=0.054 Score=48.79 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHhhhhhhhhhhccccccccchhhHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCcchHHHHHHHHHHHHHH
Q 036977 5 GLAAFSSIVSEGAKSLFKPIIRQISYVFKYQSYIDDLKDQVKQLGYKRETVQQPVNHARLQGDELYEGVTDWLHSVDEFI 84 (693)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~l~~ae~~~~~~~~~~~~wl~~l~~~~ 84 (693)
|..+++|+++.+++.+...+.........++. -+++|.++++.+...+.+-+......+..-..=++++.+..
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~-------~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKS-------ILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHH
Confidence 34455566666666666666665555444444 45555555555555555555443333333356677888888
Q ss_pred HHHHHhHHHhHHHHhhhccccCCCCchhhhcHHHHHHHHHHHHHHHHhc
Q 036977 85 SEGVAKSIIDDEERAKKFCFKGLCPNLMSRYKLSKQAAKAAEAAAGLVG 133 (693)
Q Consensus 85 y~~~~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~ 133 (693)
.+ ++++++.+... ..+++...++.+++|+++.+.+....+
T Consensus 76 ~~--g~~LV~k~sk~-------~r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 76 EK--GKELVEKCSKV-------RRWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HH--HHHHHHHhccc-------cHHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 88 88888875332 233566778889999998888887643
No 295
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.99 E-value=0.0061 Score=53.89 Aligned_cols=22 Identities=45% Similarity=0.869 Sum_probs=20.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (693)
|+|.|++|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 296
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.99 E-value=0.042 Score=53.62 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|.+|.|||||++.++....
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999998654
No 297
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.13 Score=53.49 Aligned_cols=70 Identities=14% Similarity=0.033 Sum_probs=43.0
Q ss_pred CCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCC-hhhhhhhcCCCcEEEcCCCCHHHHHHHHHH
Q 036977 258 EKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRS-RDLLCIDMNSQKIFWIDALSKEEALHLAKL 334 (693)
Q Consensus 258 ~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 334 (693)
+++-++|+|+++... ..+.+...+.. -.+++.+|++|.+ ..+..+....-..+.+.+++.++..+.+..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEE--------Pp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEE--------PPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcC--------CCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 355688999998652 33443322322 3345555555544 445433333446899999999999888866
Q ss_pred h
Q 036977 335 Q 335 (693)
Q Consensus 335 ~ 335 (693)
.
T Consensus 203 ~ 203 (342)
T PRK06964 203 Q 203 (342)
T ss_pred c
Confidence 4
No 298
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.96 E-value=0.036 Score=55.74 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=31.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
...++.|.|.+|+|||++|.+++.....+ -..++|++..+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC
Confidence 34789999999999999999987765432 357888888643
No 299
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.96 E-value=0.019 Score=60.61 Aligned_cols=88 Identities=26% Similarity=0.310 Sum_probs=54.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCC-CCHHHHHHHHHHHHhc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLN-DSIHHRASRLRERLKQ 257 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~L~~ 257 (693)
-.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++ ..-++.++...+.. ...+.....+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4799999999999999999999876654 356888876543 3332 23345566433220 0001112334444444
Q ss_pred CCcEEEEEeCCCCc
Q 036977 258 EKRVLIILDNIWTK 271 (693)
Q Consensus 258 ~k~~LlVlDdv~~~ 271 (693)
.+.-++|+|.+...
T Consensus 157 ~~~~lVVIDSIq~l 170 (372)
T cd01121 157 LKPDLVIIDSIQTV 170 (372)
T ss_pred cCCcEEEEcchHHh
Confidence 46779999998644
No 300
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.92 E-value=0.031 Score=63.81 Aligned_cols=87 Identities=17% Similarity=0.256 Sum_probs=63.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLR 252 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 252 (693)
..+++-|.|.+|+|||||+.+++...... -..++|++..+.++. ..++++|.+.+. +...++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 35788999999999999998877665433 356899998887774 367777765432 345566666666
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 036977 253 ERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 253 ~~L~~~k~~LlVlDdv~~~ 271 (693)
..+..++.-++|+|.+...
T Consensus 132 ~lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HHhhcCCCeEEEEcchhhh
Confidence 6666656779999998744
No 301
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.90 E-value=0.41 Score=53.10 Aligned_cols=166 Identities=16% Similarity=0.204 Sum_probs=101.6
Q ss_pred CccccchHHHHHHHHHHHh----c-CCceEEEEEecCCCcHHHHHHHHHHHhhc---c---CCCCEEEEEEecCCCChHH
Q 036977 157 NEAFDSRMKVFQDVMEALK----D-DKLNIIGVYGMGGVGKTTLVKQVAKKVME---D---KLIDKVVMAEVTQNPDPQK 225 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~---~~F~~~~wv~vs~~~~~~~ 225 (693)
+..+-+|+.+..+|-..+. + +....+-|.|.+|+|||..+..|.+..+. + ..|++ +.|+.-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHH
Confidence 3456689999999988874 2 23458999999999999999999997652 2 22332 3344444566899
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCccC-----cc-ccCCCCCCcccccccccCCC
Q 036977 226 IQDKLASDLGMKFDLNDSIHHRASRLRERLK----QEKRVLIILDNIWTKLE-----LD-AVGIPSGDVDEKDREDDQRR 295 (693)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~k~~LlVlDdv~~~~~-----~~-~l~~~~~~~~~~~~~~~~~~ 295 (693)
+...|..++...... .....+.|..++. ..+.+++++|+++..-. +. -+..| ..++
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp-----------t~~~ 539 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP-----------TLKN 539 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC-----------cCCC
Confidence 999999998765432 3334445555554 13668999999875421 11 11111 3345
Q ss_pred eEEEEecCCh--hhhhhhcC-------CCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 296 CTIILTSRSR--DLLCIDMN-------SQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 296 ~~IivTtR~~--~v~~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
+|++|.+=.. +.....+. ....+...+.++.+-.++...+..
T Consensus 540 sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~ 590 (767)
T KOG1514|consen 540 SKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLK 590 (767)
T ss_pred CceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhc
Confidence 6555443221 11111111 124677788888887777766654
No 302
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.90 E-value=0.072 Score=53.85 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=52.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHHHhCCCCC---CCCCHHHH-HHHH
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLASDLGMKFD---LNDSIHHR-ASRL 251 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~---~~~~~~~~-~~~l 251 (693)
.+.+++.++|++|+||||.+..++...... -..+.+++...... ..+-++...+..+.+.. ...+.... ...+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 346899999999999999999999877543 24566676553211 12333445555554321 11223222 2334
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 036977 252 RERLKQEKRVLIILDNIW 269 (693)
Q Consensus 252 ~~~L~~~k~~LlVlDdv~ 269 (693)
...... ..-++++|-.-
T Consensus 148 ~~~~~~-~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKAR-NIDVVLIDTAG 164 (272)
T ss_pred HHHHHC-CCCEEEEeCCC
Confidence 333333 44578888764
No 303
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.90 E-value=0.0075 Score=57.86 Aligned_cols=26 Identities=46% Similarity=0.685 Sum_probs=23.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
||+|.|.+|+||||+|+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999998754
No 304
>PRK04328 hypothetical protein; Provisional
Probab=95.88 E-value=0.039 Score=55.19 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=32.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
.-.++.|.|.+|+|||+|+.++....-.+ -..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 35789999999999999999977664332 466888887664
No 305
>PLN03150 hypothetical protein; Provisional
Probab=95.84 E-value=0.016 Score=66.04 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=56.3
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCC-CCCcC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPR-LSWLR 617 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~-L~~L~ 617 (693)
+++|+.|.+.++.-.. ..|..+..+++|+.|+++++.- +..+++|++|++++|.+... ++. +.++.
T Consensus 441 L~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 441 LRHLQSINLSGNSIRG--NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred CCCCCEEECCCCcccC--cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 5688888888765333 4577899999999999988852 23678899999999776533 333 34667
Q ss_pred EeecCCCcCccccc
Q 036977 618 LIDLPKLKRFYNFT 631 (693)
Q Consensus 618 ~L~L~~c~~l~~LP 631 (693)
.+++.+++.+-..|
T Consensus 519 ~l~~~~N~~lc~~p 532 (623)
T PLN03150 519 SFNFTDNAGLCGIP 532 (623)
T ss_pred eEEecCCccccCCC
Confidence 78887755444433
No 306
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.82 E-value=0.033 Score=54.74 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|.+|+|||||++.+.....
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 447899999999999999999998654
No 307
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.79 E-value=0.026 Score=54.43 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
...+++|+|.+|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999886
No 308
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.79 E-value=0.038 Score=55.30 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|.+|+|||||++.++....
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999997654
No 309
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.027 Score=50.61 Aligned_cols=46 Identities=26% Similarity=0.494 Sum_probs=35.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCC
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFD 239 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 239 (693)
+|.|-|++|+||||+|+.+.+...-. | .+.-.+++++++..|.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCCHH
Confidence 68999999999999999999997654 1 1234577888888877643
No 310
>PTZ00301 uridine kinase; Provisional
Probab=95.78 E-value=0.0092 Score=57.67 Aligned_cols=26 Identities=31% Similarity=0.680 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..+|+|.|.+|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 311
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.77 E-value=0.012 Score=57.18 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=40.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEE--ec-----CCCChHHH--HHHHHHHhCCCCCC
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAE--VT-----QNPDPQKI--QDKLASDLGMKFDL 240 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--vs-----~~~~~~~~--~~~i~~~l~~~~~~ 240 (693)
++..|.++||+|+||||.++.++.+...+..-.+++=.+ |. -+.++.+. .++.+++.+..+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 467889999999999999999999988764444444321 11 11223222 35667776655544
No 312
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.035 Score=58.76 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=47.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
..++.++|++|+||||++..++........ ..+..++.... ......++..++.++.+.....+ ...+.+.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~----~~~l~~~l~~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMG-KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD----IKKFKETLAR 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH----HHHHHHHHHh
Confidence 468999999999999999999976532211 23444444321 12233445555566654432111 2234444433
Q ss_pred CCcEEEEEeC
Q 036977 258 EKRVLIILDN 267 (693)
Q Consensus 258 ~k~~LlVlDd 267 (693)
...-++++|-
T Consensus 298 ~~~D~VLIDT 307 (432)
T PRK12724 298 DGSELILIDT 307 (432)
T ss_pred CCCCEEEEeC
Confidence 2335688884
No 313
>PRK08233 hypothetical protein; Provisional
Probab=95.77 E-value=0.0087 Score=56.66 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..+|+|.|.+|+||||||+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998754
No 314
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.75 E-value=0.0088 Score=46.45 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+|+|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 315
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.74 E-value=0.0097 Score=57.86 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.+..+|+|.|.+|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999876
No 316
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.74 E-value=0.043 Score=53.89 Aligned_cols=27 Identities=33% Similarity=0.563 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+-.+++|+|.+|+|||||.+.+.....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999997643
No 317
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.079 Score=56.57 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=51.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLK 256 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (693)
+..+++++|..|+||||++..+............+..+..... ....+-+....+.++.+.....+..+....+. .+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 3479999999999999999988876432222234444443321 23333355666777776654444544443333 344
Q ss_pred cCCcEEEEEeCC
Q 036977 257 QEKRVLIILDNI 268 (693)
Q Consensus 257 ~~k~~LlVlDdv 268 (693)
+ .-++++|-.
T Consensus 269 ~--~d~VLIDTa 278 (420)
T PRK14721 269 G--KHMVLIDTV 278 (420)
T ss_pred C--CCEEEecCC
Confidence 3 356777764
No 318
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.72 E-value=0.015 Score=62.44 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=41.2
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCC
Q 036977 158 EAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLID 210 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 210 (693)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+.........|.
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 35789999999999888654 4578999999999999999998765433344
No 319
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.70 E-value=0.027 Score=50.68 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=32.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHH
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 229 (693)
|.++|.+|+|||+||+.+++... ....-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceee
Confidence 67999999999999999999873 23455677777777766543
No 320
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.66 E-value=0.035 Score=52.77 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=28.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
+.|.|.+|+|||+|+.++....... -..++|++..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC
Confidence 6799999999999999987775433 256788877543
No 321
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.65 E-value=0.051 Score=51.10 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=25.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+..+|.|+|.+|+||||+|+.+......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999998754
No 322
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.65 E-value=0.024 Score=54.44 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
++++|+|++|.|||||.+.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998654
No 323
>PRK07667 uridine kinase; Provisional
Probab=95.64 E-value=0.019 Score=54.95 Aligned_cols=38 Identities=24% Similarity=0.525 Sum_probs=29.1
Q ss_pred HHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 168 QDVMEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 168 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+.+.+.+.. ++..+|+|.|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344444432 34479999999999999999999988754
No 324
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.61 E-value=0.035 Score=53.17 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+-.+++|.|.+|.|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998765
No 325
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.60 E-value=0.012 Score=53.29 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987654
No 326
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.59 E-value=0.03 Score=53.05 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.-.+++|+|.+|+|||||.+.++.....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3468999999999999999999987543
No 327
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.59 E-value=0.012 Score=57.21 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...+|+|+|++|+|||||++.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998754
No 328
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.024 Score=54.22 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
.-.+++|+|.+|+|||||++.++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999864
No 329
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.59 E-value=0.17 Score=43.97 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=33.2
Q ss_pred ccchHHHHHHHHHHHh----c---CCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 160 FDSRMKVFQDVMEALK----D---DKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 160 ~~gR~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
++|..-..+.+++.+. + +++-|++.+|.+|+|||.+++.+++..-
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 4566655555555553 2 3567999999999999999999988843
No 330
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.76 Score=44.37 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=83.5
Q ss_pred cchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHH
Q 036977 161 DSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQ 227 (693)
Q Consensus 161 ~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 227 (693)
-|-++.+++|.+.+.- .+++-+.++|++|.|||-||++|+++. .+.|+.||.. ++.
T Consensus 150 GgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs----elv 218 (404)
T KOG0728|consen 150 GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----ELV 218 (404)
T ss_pred ccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----HHH
Confidence 3567777777766531 256778899999999999999998664 3455666643 122
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCC------cc----cccccccCCCeE
Q 036977 228 DKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGD------VD----EKDREDDQRRCT 297 (693)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~------~~----~~~~~~~~~~~~ 297 (693)
+.. +|. ......++.-.-+..-+-+|..|++++...-..-...-.+ +. ++-+.-...+-+
T Consensus 219 qk~---ige-------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknik 288 (404)
T KOG0728|consen 219 QKY---IGE-------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIK 288 (404)
T ss_pred HHH---hhh-------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceE
Confidence 211 111 1122333333333346788889988765210000000000 00 111111456678
Q ss_pred EEEecCChhhhhhhc-C---CCcEEEcCCCCHHHHHHHHHHhh
Q 036977 298 IILTSRSRDLLCIDM-N---SQKIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 298 IivTtR~~~v~~~~~-~---~~~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
||..|..-+++.... . .+.-++..+-+.+...+++.-+.
T Consensus 289 vimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 289 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 888887776653221 1 23456666667666666665443
No 331
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.58 E-value=0.058 Score=53.79 Aligned_cols=94 Identities=21% Similarity=0.208 Sum_probs=60.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc--cCCCCEEEEEEecCCC-ChHHHHHHHHHHhCCCC------CCCCCH----
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME--DKLIDKVVMAEVTQNP-DPQKIQDKLASDLGMKF------DLNDSI---- 244 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~---- 244 (693)
+-+-++|.|..|+|||+|+..+.++... +++-+.++++-+.+.. ...++..++...=..+. ...++.
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3467899999999999999999887651 2234678999888765 45666666654321111 001111
Q ss_pred --HHHHHHHHHHHhc--CCcEEEEEeCCCCc
Q 036977 245 --HHRASRLRERLKQ--EKRVLIILDNIWTK 271 (693)
Q Consensus 245 --~~~~~~l~~~L~~--~k~~LlVlDdv~~~ 271 (693)
....-.+-++++. +++.|+++||+...
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1223446666654 48999999998654
No 332
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.56 E-value=0.037 Score=57.18 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|.|||||.+.++.-..
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999998654
No 333
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.56 E-value=0.0029 Score=67.49 Aligned_cols=133 Identities=20% Similarity=0.230 Sum_probs=85.1
Q ss_pred hcccccccccccCccccccccCC-Ccc----cccCCCCCCcc--cccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEe
Q 036977 512 IQKCYEEMIGFRDIKDLQLSHFP-RLQ----EIWHGQALPVS--FFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEV 584 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~~~-~L~----~~~~~~~~~~~--~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l 584 (693)
+..+..+++..|.+..+|...|. -|+ ...+...+|.. ....|..|+...|+ ...+|+.+++|.+|+.|++
T Consensus 120 L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne---i~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE---IQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhh---hhhchHHhhhHHHHHHHHH
Confidence 34445555666666666655421 111 12222334432 24566677776654 3366888999999999999
Q ss_pred cCCCCCcc---c--cccceeccCCCCcccc---cCCCCCcCEeecCCCcCcccccccc---cCCCCcCEEecccc
Q 036977 585 RNCDSLEE---V--LHLEELNAKEEHIGPL---FPRLSWLRLIDLPKLKRFYNFTGNI---IELPELRYLTIENC 648 (693)
Q Consensus 585 ~~c~~l~~---l--~~L~~L~l~~~~l~~~---~~~L~~L~~L~L~~c~~l~~LP~~i---~~L~~L~~L~i~~C 648 (693)
+...-+.- + -.|..|+++.|++..+ |.+|.+||+|-|.+ +=|++=|..| |...=.++|++.-|
T Consensus 197 rRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 197 RRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 77653321 1 1366778888876666 89999999999997 5588866554 34555788999988
No 334
>PRK05973 replicative DNA helicase; Provisional
Probab=95.55 E-value=0.062 Score=52.77 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=64.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----------CCCHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----------NDSIHH 246 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----------~~~~~~ 246 (693)
+-.++.|.|.+|+|||+++.++......+ -..++|++.... ..++...+ .+++..... ....+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~-~s~g~d~~~~~~~~~~d~~d~~~~~~ 137 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRL-RALGADRAQFADLFEFDTSDAICADY 137 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHH-HHcCCChHHhccceEeecCCCCCHHH
Confidence 34689999999999999999988776533 346777776654 34444443 233332111 122222
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCC-cccccccccCCCeEEEEecCChhh
Q 036977 247 RASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGD-VDEKDREDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 247 ~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~IivTtR~~~v 307 (693)
....+.. ..+.-++|+|-+.....-..- ..+.. +..+.......|..||+|+....-
T Consensus 138 ii~~l~~---~~~~~lVVIDsLq~l~~~~~~-~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 138 IIARLAS---APRGTLVVIDYLQLLDQRREK-PDLSVQVRALKSFARERGLIIVFISQIDRS 195 (237)
T ss_pred HHHHHHH---hhCCCEEEEEcHHHHhhcccc-hhHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 2222222 223469999998644211000 00000 001111224577888888876654
No 335
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.047 Score=56.60 Aligned_cols=87 Identities=28% Similarity=0.302 Sum_probs=59.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHHhc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-NDSIHHRASRLRERLKQ 257 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~L~~ 257 (693)
-.++.|-|-+|+|||||.-+++.+...+. .++||+--+.. .+ .+-.+++++.+.+. ..-.+...+.+.+.+..
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~--~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESL--QQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCH--HH-HHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 47899999999999999999999988653 78887665543 32 23445667654433 12223334455555555
Q ss_pred CCcEEEEEeCCCCc
Q 036977 258 EKRVLIILDNIWTK 271 (693)
Q Consensus 258 ~k~~LlVlDdv~~~ 271 (693)
.++-++|+|-+++.
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 68899999998755
No 336
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=95.53 E-value=0.067 Score=50.00 Aligned_cols=30 Identities=37% Similarity=0.647 Sum_probs=26.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
..-.|++|.|.+|.||||+.+.++.-....
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~P~ 55 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLIPD 55 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhccCC
Confidence 356899999999999999999999887654
No 337
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.53 E-value=0.036 Score=56.78 Aligned_cols=28 Identities=39% Similarity=0.517 Sum_probs=24.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+-.++++.|++|+|||||.+.+....+.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3469999999999999999999988664
No 338
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.51 E-value=0.075 Score=57.69 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=50.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecC-CCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQ-NPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
.+|++++|+.|+||||++..++.....+.....+..++... .....+-++...+.++.+.....+..+....+ ..+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999998765432222455555433 12333445555666666543322333332222 22333
Q ss_pred CCcEEEEEeCCC
Q 036977 258 EKRVLIILDNIW 269 (693)
Q Consensus 258 ~k~~LlVlDdv~ 269 (693)
+..+++|..-
T Consensus 335 --~d~VLIDTaG 344 (484)
T PRK06995 335 --KHIVLIDTIG 344 (484)
T ss_pred --CCeEEeCCCC
Confidence 3466777643
No 339
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.50 E-value=0.051 Score=54.80 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=36.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
.-+++.|+|.+|+|||+++.++....... ...++||+..+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~ 62 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES 62 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC
Confidence 45899999999999999999999887765 788999998865
No 340
>PRK06762 hypothetical protein; Provisional
Probab=95.50 E-value=0.013 Score=54.64 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 341
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.50 E-value=0.036 Score=54.60 Aligned_cols=90 Identities=20% Similarity=0.369 Sum_probs=55.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCC----------------CC-
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKF----------------DL- 240 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------------~~- 240 (693)
...++.|.|.+|+|||+|+.++....-.+ .=..++|++..++. .++.+.+ +.++.+. ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~~-~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIENM-KSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHHH-HTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHHH-HHcCCcHHHHhhcCCEEEEecccccc
Confidence 35799999999999999999876554322 02467888876543 4444433 2332210 00
Q ss_pred ---CCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 241 ---NDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 241 ---~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
..+.+.....+.+.++..+...+|+|.+...
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 2456777777777777656678999986433
No 342
>PTZ00494 tuzin-like protein; Provisional
Probab=95.49 E-value=0.25 Score=51.90 Aligned_cols=170 Identities=14% Similarity=0.150 Sum_probs=102.6
Q ss_pred CCCCCCCCccccchHHHHHHHHHHHhc---CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHH
Q 036977 150 GLNDGKDNEAFDSRMKVFQDVMEALKD---DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKI 226 (693)
Q Consensus 150 ~~~~~~~~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 226 (693)
....+.....++.|+.+-..+.+.|.. ..++++++.|.-|.||++|.+........ ..++|++... ++-
T Consensus 363 ~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDt 434 (664)
T PTZ00494 363 GMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDT 434 (664)
T ss_pred ccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cch
Confidence 334456677889999988888777753 36899999999999999999998877654 3567777654 556
Q ss_pred HHHHHHHhCCCCCCC--CCHHHHHHHHHH---HHhcCCcEEEEEe--CCCCccC-ccccCCCCCCcccccccccCCCeEE
Q 036977 227 QDKLASDLGMKFDLN--DSIHHRASRLRE---RLKQEKRVLIILD--NIWTKLE-LDAVGIPSGDVDEKDREDDQRRCTI 298 (693)
Q Consensus 227 ~~~i~~~l~~~~~~~--~~~~~~~~~l~~---~L~~~k~~LlVlD--dv~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~I 298 (693)
++.+.++++.+.-+. +-.+-..+.... ...+ +.=+||+- +-.+..- .++. ..+.. ...-|.|
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g-~~P~lVlkLREGssL~RVYnE~-vaLac--------DrRlCHv 504 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASD-GVPFLVMRLREGSDLGRVYGEV-VSLVS--------DCQACHI 504 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCC-CCCEEEEEeccCCcHHHHHHHH-HHHHc--------cchhhee
Confidence 789999999876431 112222222211 1223 33344432 2222211 1110 11111 2334666
Q ss_pred EEecCChhhh--hhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 299 ILTSRSRDLL--CIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 299 ivTtR~~~v~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
++----+.+. ....+.-.-|.+.+++..+|.+.-++...
T Consensus 505 v~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~lD 545 (664)
T PTZ00494 505 VLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTLD 545 (664)
T ss_pred eeechHhhhchhhccCccceeEecCCcCHHHHHHHHhcccc
Confidence 6655444431 11223446889999999999998887764
No 343
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.49 E-value=0.084 Score=50.43 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=49.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCC--------CEEEEEEecCCCChHHHHHHHHHHhCCC-------------
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLI--------DKVVMAEVTQNPDPQKIQDKLASDLGMK------------- 237 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~~~~~~~~~i~~~l~~~------------- 237 (693)
-.++.|+|++|+||||++..++........| ..++|++..... .++.+.+.......
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~--~~~~~rl~~~~~~~~~~~~~~~~~~~~ 109 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE--SQIARRLRALLQDYDDDANLFFVDLSN 109 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H--HHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH--HHHHHHHHHHhcccCCccceEEeeccc
Confidence 3588999999999999999999887653323 357888776652 23333322221110
Q ss_pred ---------CCCCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCc
Q 036977 238 ---------FDLNDSIHHRASRLRERLKQ-EKRVLIILDNIWTK 271 (693)
Q Consensus 238 ---------~~~~~~~~~~~~~l~~~L~~-~k~~LlVlDdv~~~ 271 (693)
.............+.+.+.. .+.-++|+|++...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~ 153 (193)
T PF13481_consen 110 WGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSL 153 (193)
T ss_dssp E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG
T ss_pred cccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHH
Confidence 00001123345566666665 45679999986543
No 344
>PRK05439 pantothenate kinase; Provisional
Probab=95.48 E-value=0.11 Score=53.28 Aligned_cols=45 Identities=22% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP 221 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 221 (693)
..+-+|+|.|.+|+||||+|+.+.........-..+.-++...-.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 356799999999999999999998865432111234445544433
No 345
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.48 E-value=0.071 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...+.++|+.|+||||+|..+++..-
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 45688999999999999999988753
No 346
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.46 E-value=0.15 Score=53.27 Aligned_cols=102 Identities=22% Similarity=0.252 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcC----CceEEEEEecCCCcHHH-HHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCC
Q 036977 164 MKVFQDVMEALKDD----KLNIIGVYGMGGVGKTT-LVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMK 237 (693)
Q Consensus 164 ~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 237 (693)
.+....+..++.++ +.++|++||+.|+|||| ||+..+.-. ....-..+..|+...- ....+=++..++-++.+
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp 262 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP 262 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCc
Confidence 33444455555444 47999999999999997 555444443 1112345777766543 23344456667778888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 036977 238 FDLNDSIHHRASRLRERLKQEKRVLIILDNIW 269 (693)
Q Consensus 238 ~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~ 269 (693)
.....+..+....+... ++ .-+|..|-+-
T Consensus 263 ~~vv~~~~el~~ai~~l-~~--~d~ILVDTaG 291 (407)
T COG1419 263 LEVVYSPKELAEAIEAL-RD--CDVILVDTAG 291 (407)
T ss_pred eEEecCHHHHHHHHHHh-hc--CCEEEEeCCC
Confidence 77666666665555433 32 2466667653
No 347
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.0043 Score=60.98 Aligned_cols=94 Identities=16% Similarity=0.305 Sum_probs=63.3
Q ss_pred ceeeecCCCCCCcCCCchhh----------c-CCCCCCEEEecCCCC-Cc---------cccccceeccCCC-Ccccc--
Q 036977 554 RELVVDDCTNMSSAIPANLL----------R-CLNNLRYLEVRNCDS-LE---------EVLHLEELNAKEE-HIGPL-- 609 (693)
Q Consensus 554 ~~L~i~~c~~~~~~~~~~~l----------~-~L~~L~~L~l~~c~~-l~---------~l~~L~~L~l~~~-~l~~~-- 609 (693)
-.|-+.+|+.+..+.+...+ . =-+.|..|+|+||.. +. ..|+|-+|+++++ .+..-
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~ 331 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF 331 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH
Confidence 34666788877643321110 0 035688889988863 22 6788889999883 33332
Q ss_pred --cCCCCCcCEeecCCCcCcccccc---cccCCCCcCEEeccccc
Q 036977 610 --FPRLSWLRLIDLPKLKRFYNFTG---NIIELPELRYLTIENCP 649 (693)
Q Consensus 610 --~~~L~~L~~L~L~~c~~l~~LP~---~i~~L~~L~~L~i~~C~ 649 (693)
+.+++.|++|.++.|..+. |. .+...|+|.+|++.+|-
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 7788899999999988654 44 33477889999999885
No 348
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.43 E-value=0.014 Score=55.70 Aligned_cols=28 Identities=39% Similarity=0.601 Sum_probs=25.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
++.+|+|.|.+|+||||+|+.++.....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4579999999999999999999998764
No 349
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=1.6 Score=46.21 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=69.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEK 259 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (693)
+=-.++|++|.|||+++.++++... |+..- ..++...+-.+ ++.++... ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d-Lr~LL~~t-----------------------~~ 286 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD-LRHLLLAT-----------------------PN 286 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH-HHHHHHhC-----------------------CC
Confidence 3457999999999999999998865 44322 23333222222 22222221 24
Q ss_pred cEEEEEeCCCCccCccccC-------------CCCCCcccc-cccccCC--CeEEEEecCChhhhhhhc-C---CCcEEE
Q 036977 260 RVLIILDNIWTKLELDAVG-------------IPSGDVDEK-DREDDQR--RCTIILTSRSRDLLCIDM-N---SQKIFW 319 (693)
Q Consensus 260 ~~LlVlDdv~~~~~~~~l~-------------~~~~~~~~~-~~~~~~~--~~~IivTtR~~~v~~~~~-~---~~~~~~ 319 (693)
+-+||+.|++-..+...-. ..+..+... -+-|... .--||.||...+-+..++ . .+-.+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 5788888887442211100 000000000 0122333 234667887776542221 1 223677
Q ss_pred cCCCCHHHHHHHHHHhhhh
Q 036977 320 IDALSKEEALHLAKLQHLE 338 (693)
Q Consensus 320 l~~L~~~ea~~Lf~~~~~~ 338 (693)
+.--+.+....||.++...
T Consensus 367 mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred cCCCCHHHHHHHHHHhcCC
Confidence 7888888888999888764
No 350
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.41 E-value=0.066 Score=48.83 Aligned_cols=25 Identities=28% Similarity=0.652 Sum_probs=22.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
++.|+|.+|+||||+|+.+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999998653
No 351
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.36 E-value=0.03 Score=51.00 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=28.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEe
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEV 217 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 217 (693)
..+|-|+|.+|+||||||+.+.+..... -..+.+++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LDg 38 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLDG 38 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEecC
Confidence 4688999999999999999999998865 344555543
No 352
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.34 E-value=0.015 Score=55.27 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+.++|+|+|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999764
No 353
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.34 E-value=0.037 Score=54.92 Aligned_cols=63 Identities=21% Similarity=0.340 Sum_probs=48.1
Q ss_pred HHHHHHh--cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHH
Q 036977 169 DVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLA 231 (693)
Q Consensus 169 ~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 231 (693)
+++..+. .++..+|+|.|.||+||+||.-.+......+++--.++=|+-|++++--.++-+=+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 4444443 45678999999999999999999999998776666677788888887655555443
No 354
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.28 E-value=0.074 Score=58.12 Aligned_cols=27 Identities=37% Similarity=0.645 Sum_probs=23.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...+++|+|..|+|||||++.++....
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~ 75 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTM 75 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999998754
No 355
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.27 E-value=0.051 Score=53.24 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=39.5
Q ss_pred HHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHH
Q 036977 167 FQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 167 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 229 (693)
...+++.+. ..+..+|+|.|++|+||+||+..+......+++--.++=|+-|++++--.++-+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 344555553 346789999999999999999999999887644445666676777765444443
No 356
>PRK03839 putative kinase; Provisional
Probab=95.26 E-value=0.016 Score=54.86 Aligned_cols=24 Identities=50% Similarity=0.670 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.|.|+|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999865
No 357
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.24 E-value=0.048 Score=59.44 Aligned_cols=115 Identities=24% Similarity=0.303 Sum_probs=63.7
Q ss_pred ceEEEEEecCCCcHHH-HHHHHHHHhhccCCCCEEEEEEecCCC--ChHHHHHHHHHHhCCCCCC----------CCCHH
Q 036977 179 LNIIGVYGMGGVGKTT-LVKQVAKKVMEDKLIDKVVMAEVTQNP--DPQKIQDKLASDLGMKFDL----------NDSIH 245 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~----------~~~~~ 245 (693)
.+||.|+|..|+|||| |++.+|.+--.+ ++ .|-+.++. ....+.+.+.+.++..... -.+..
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~edGY~~---~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYEDGYAD---NG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhccccc---CC--eeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 4799999999999998 888888774322 12 33444443 3455666677776443221 01111
Q ss_pred H------HHHHHHHHHhc---CCcEEEEEeCCCCccCccc-----cCCCCCCcccccccccCCCeEEEEecCChhh
Q 036977 246 H------RASRLRERLKQ---EKRVLIILDNIWTKLELDA-----VGIPSGDVDEKDREDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 246 ~------~~~~l~~~L~~---~k~~LlVlDdv~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v 307 (693)
. -.-.|++.|++ .|--.||+|+++...--.+ ++..+. .-..-|+||||-..+.
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la---------rRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA---------RRRDLKLIVTSATMDA 512 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH---------hhccceEEEeeccccH
Confidence 0 01123444433 1556899999886532111 111111 2336789999876654
No 358
>PRK04040 adenylate kinase; Provisional
Probab=95.24 E-value=0.018 Score=54.67 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..+|+|+|++|+||||+++.+.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998864
No 359
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.20 E-value=0.021 Score=51.30 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=28.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecC
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQ 219 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 219 (693)
++|.|+|..|+|||||++.+.+....+ .+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 479999999999999999999998765 244444555544
No 360
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.18 E-value=0.01 Score=59.88 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHH
Q 036977 168 QDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHR 247 (693)
Q Consensus 168 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 247 (693)
..+++.+...+ +-+.++|+.|+|||++++.......... | ...-++.+...+...+++.+-..+.......-.
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~g---- 95 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYG---- 95 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEE----
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCC----
Confidence 44555555554 4568999999999999999886644321 1 233445554444444333222222111100000
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 248 ASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 248 ~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
-.++|+.++.+||+.-.
T Consensus 96 -------P~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 96 -------PPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp -------EESSSEEEEEEETTT-S
T ss_pred -------CCCCcEEEEEecccCCC
Confidence 01248889999998744
No 361
>PRK06851 hypothetical protein; Provisional
Probab=95.18 E-value=0.38 Score=50.43 Aligned_cols=43 Identities=28% Similarity=0.202 Sum_probs=33.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
+--+++.|.|.+|+|||||++.++.....+ .++..++-|.+.+
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dP 254 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDP 254 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 445889999999999999999999998765 3555555554444
No 362
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.15 E-value=0.037 Score=61.05 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=70.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCC------------------
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFD------------------ 239 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------ 239 (693)
+.+++.|.|.+|+||||||.++...-..+ .=..++||+..+. ..++.+. +++++....
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE~--~~~l~~~-~~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEES--PQDIIKN-ARSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEecC--HHHHHHH-HHHcCCCHHHHhhcCceEEEecCchhc
Confidence 45799999999999999999986653222 1256888888643 3343333 233332111
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC-ccccCCCCCCcccccccccCCCeEEEEecCChh
Q 036977 240 -----LNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE-LDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD 306 (693)
Q Consensus 240 -----~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~ 306 (693)
...+.+.....+...+..+++-.+|+|-+..... .+.....-..+..+++.....|+.+|+||....
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~TvLLtsh~~~ 168 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTTVMTTERIE 168 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEEEEEecCcc
Confidence 0124455666777777766777899996443210 000000000011222233456888999987654
No 363
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.13 E-value=0.034 Score=57.78 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=40.9
Q ss_pred CccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 157 NEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
...++|.+..+..++-.+.+....-+.|.|.+|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 45688999999998877777777778899999999999999998776
No 364
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.13 E-value=0.07 Score=57.56 Aligned_cols=93 Identities=22% Similarity=0.331 Sum_probs=61.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHHHhCCCC------CCCCCH------
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLASDLGMKF------DLNDSI------ 244 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~------~~~~~~------ 244 (693)
+-+-++|.|.+|+|||||+.++.+....+ +-+.++++-+.+... ..++..++...-.... ....+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 44679999999999999999999887754 567788888876643 5566666654321110 001111
Q ss_pred HHHHHHHHHHHhc--CCcEEEEEeCCCCc
Q 036977 245 HHRASRLRERLKQ--EKRVLIILDNIWTK 271 (693)
Q Consensus 245 ~~~~~~l~~~L~~--~k~~LlVlDdv~~~ 271 (693)
...+-.+-++++. ++++|+++|++...
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 1233446666643 48999999998644
No 365
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.13 Score=49.80 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=57.4
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChH
Q 036977 158 EAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQ 224 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 224 (693)
.++-|=.+.++++.+...- +.++-|.++|++|.|||-+|++|++..... | +.|-. .
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvig----s 245 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIG----S 245 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----Eeehh----H
Confidence 4455777777777765531 356778999999999999999999874432 3 22211 1
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 036977 225 KIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWT 270 (693)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~ 270 (693)
++.+. .+| .-.....++.+.-+..|.|+|.||+++-
T Consensus 246 elvqk---yvg-------egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 246 ELVQK---YVG-------EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred HHHHH---Hhh-------hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 11111 111 1223455566666666889999999863
No 366
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.10 E-value=0.026 Score=59.33 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=63.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQ-KIQDKLASDLGMKFDLNDSIHHRASRLRERL 255 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L 255 (693)
...+.+.|.|+.|+||||+++.+.+..... ....++. +.++.... .-...+..+- +...........++..|
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~t-iEdp~E~~~~~~~~~i~q~----evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIIT-IEDPIEYVHRNKRSLINQR----EVGLDTLSFANALRAAL 192 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEE-EcCChhhhccCccceEEcc----ccCCCCcCHHHHHHHhh
Confidence 345789999999999999999988765432 3344432 22211100 0000000000 01111223455677777
Q ss_pred hcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhh
Q 036977 256 KQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL 308 (693)
Q Consensus 256 ~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~ 308 (693)
+. .+=.|++|++.+.+.+...... ...|..++.|.+.....
T Consensus 193 r~-~pd~i~vgEird~~~~~~~l~a-----------a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 193 RE-DPDVILIGEMRDLETVELALTA-----------AETGHLVFGTLHTNSAA 233 (343)
T ss_pred cc-CCCEEEEeCCCCHHHHHHHHHH-----------HHcCCcEEEEEcCCCHH
Confidence 76 7889999999876554432111 34466677777776653
No 367
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.09 E-value=0.038 Score=53.27 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=22.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..+++.|.|++|.||||+.+.++...
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999987553
No 368
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.09 E-value=0.047 Score=52.27 Aligned_cols=51 Identities=25% Similarity=0.438 Sum_probs=36.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCC
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFD 239 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 239 (693)
.|+|+|-||+||||+|..+......++. ..++=|+...++++.. +||...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~nL~~-------~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSNLPE-------ALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCChHH-------hcCCCCC
Confidence 5899999999999999997777665533 3456677777666543 5665553
No 369
>PRK00625 shikimate kinase; Provisional
Probab=95.06 E-value=0.019 Score=53.68 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988864
No 370
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.072 Score=57.74 Aligned_cols=139 Identities=19% Similarity=0.222 Sum_probs=80.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
.+.=|.++|++|.|||-||++|+++.+.. | ++|..+ +++... +| ..+..+..+.+.-+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N--F-----isVKGP----ELlNkY---VG-------ESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN--F-----ISVKGP----ELLNKY---VG-------ESERAVRQVFQRARA 602 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc--e-----EeecCH----HHHHHH---hh-------hHHHHHHHHHHHhhc
Confidence 35668899999999999999999998765 3 444432 122211 11 123344445555554
Q ss_pred CCcEEEEEeCCCCccCccccCCCC---CCcccccccc----cCCCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHH
Q 036977 258 EKRVLIILDNIWTKLELDAVGIPS---GDVDEKDRED----DQRRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKE 326 (693)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~l~~~~---~~~~~~~~~~----~~~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ 326 (693)
.-+|+|.||+++....-..-...- .-+.+++.+. .-.|.-||-.|...++....+ .-+....++.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 578999999998652110000000 0011111111 234666777777766642222 12457778888888
Q ss_pred HHHHHHHHhhh
Q 036977 327 EALHLAKLQHL 337 (693)
Q Consensus 327 ea~~Lf~~~~~ 337 (693)
|-..++.....
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 88888887764
No 371
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.04 E-value=0.077 Score=55.59 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=23.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|.|||||.+.+.....
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 457999999999999999999988654
No 372
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.04 E-value=0.016 Score=55.81 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+|+|.|.+|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 373
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.03 E-value=0.047 Score=48.27 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 165 KVFQDVMEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 165 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
++...+-..+.. ....+|.+.|.-|+||||+++.+++....
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 334444444432 24569999999999999999999998654
No 374
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.02 E-value=0.16 Score=54.10 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+||||||+.+.--+.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w~ 387 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIWP 387 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHcccc
Confidence 346899999999999999999877654
No 375
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.02 E-value=0.21 Score=49.21 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=31.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
.-..+.|.|.+|+||||++.++......+ -..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 35799999999999999999877654322 357888877443
No 376
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.12 Score=57.48 Aligned_cols=139 Identities=19% Similarity=0.157 Sum_probs=77.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
..+.+-++|++|.|||.||+++++..... |-.+..-.+.. . .+ ...+..+..+...-..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--fi~v~~~~l~s---------k---~v-------Gesek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--FISVKGSELLS---------K---WV-------GESEKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--EEEeeCHHHhc---------c---cc-------chHHHHHHHHHHHHHc
Confidence 45689999999999999999999965543 43222111100 0 00 1112222333333333
Q ss_pred CCcEEEEEeCCCCccCccccCCCCC---Ccccccccc----cCCCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHH
Q 036977 258 EKRVLIILDNIWTKLELDAVGIPSG---DVDEKDRED----DQRRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKE 326 (693)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~l~~~~~---~~~~~~~~~----~~~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ 326 (693)
..++.|.+|+++....+..-..... -+.+++..+ ...+..||-+|.........+ .-...+.+..-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 3789999999987643332211000 001111111 233445666666555432211 23458899999999
Q ss_pred HHHHHHHHhhh
Q 036977 327 EALHLAKLQHL 337 (693)
Q Consensus 327 ea~~Lf~~~~~ 337 (693)
+..+.|..+..
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999999876
No 377
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.01 E-value=0.033 Score=56.07 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+.|.|+|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999998765
No 378
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=94.99 E-value=0.12 Score=57.60 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++....
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 62 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVP 62 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 447899999999999999999987643
No 379
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.98 E-value=0.0061 Score=59.85 Aligned_cols=98 Identities=16% Similarity=0.229 Sum_probs=75.4
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-----CCccccccceeccCCCCcccc---cCCCCCcCEeecC
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-----SLEEVLHLEELNAKEEHIGPL---FPRLSWLRLIDLP 622 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-----~l~~l~~L~~L~l~~~~l~~~---~~~L~~L~~L~L~ 622 (693)
..|+.|++++.. +.....++.-++.+|.|++++.. ++..|++|..|++++|.+.++ -.+|.+.++|.|.
T Consensus 284 q~LtelDLS~N~---I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNL---ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccc---hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 467777777533 22345677779999999998875 456889999999999776555 5678889999999
Q ss_pred CCcCcccccccccCCCCcCEEecccccccccc
Q 036977 623 KLKRFYNFTGNIIELPELRYLTIENCPDMETF 654 (693)
Q Consensus 623 ~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~l 654 (693)
+ +.++.| +++++|=+|.+|++++. +++.+
T Consensus 361 ~-N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~l 389 (490)
T KOG1259|consen 361 Q-NKIETL-SGLRKLYSLVNLDLSSN-QIEEL 389 (490)
T ss_pred h-hhHhhh-hhhHhhhhheecccccc-chhhH
Confidence 8 778886 47889999999999986 56655
No 380
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.97 E-value=0.028 Score=52.25 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=25.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
...+++|+|..|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999887654
No 381
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.96 E-value=0.23 Score=50.44 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=36.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASD 233 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 233 (693)
..++.|.|.+|+||||++.+++.....+ +-..++|+++.. ...++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 4688999999999999999988776433 124688887765 344555555443
No 382
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.95 E-value=0.022 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.487 Sum_probs=22.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+++|+|++|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 383
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.94 E-value=0.12 Score=52.49 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=43.6
Q ss_pred CCccccchHHHHHH---HHHHHhcC--CceEEEEEecCCCcHHHHHHHHHHHhhccCCCC
Q 036977 156 DNEAFDSRMKVFQD---VMEALKDD--KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLID 210 (693)
Q Consensus 156 ~~~~~~gR~~~~~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 210 (693)
...+|+|..+..+. +++++.++ .-+.|.|+|++|.|||+||..+.+....+-+|-
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 35678998776653 56666555 358999999999999999999999998776664
No 384
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.92 E-value=0.056 Score=58.78 Aligned_cols=84 Identities=26% Similarity=0.371 Sum_probs=53.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLRE 253 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 253 (693)
-.++.|.|.+|+|||||+.+++.....+ -..++|++..+. ..++. ..++.++...+. ..+.+ .+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~-~ra~rlg~~~~~l~~~~e~~l~----~i~~ 150 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIK-LRAERLGLPSDNLYLLAETNLE----AILA 150 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHH-HHHHHcCCChhcEEEeCCCCHH----HHHH
Confidence 4699999999999999999999876532 346788876543 33332 225556543221 12333 3334
Q ss_pred HHhcCCcEEEEEeCCCCc
Q 036977 254 RLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~~~ 271 (693)
.+...+.-++|+|.+...
T Consensus 151 ~i~~~~~~lVVIDSIq~l 168 (446)
T PRK11823 151 TIEEEKPDLVVIDSIQTM 168 (446)
T ss_pred HHHhhCCCEEEEechhhh
Confidence 444436678999998644
No 385
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.90 E-value=0.071 Score=58.06 Aligned_cols=85 Identities=25% Similarity=0.276 Sum_probs=53.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLR 252 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 252 (693)
.-.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++.. -+..++...+. ..+. ..+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~----~~I~ 163 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNW----EQIC 163 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCH----HHHH
Confidence 34799999999999999999998776543 235788876543 333322 23445433211 1222 3444
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 036977 253 ERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 253 ~~L~~~k~~LlVlDdv~~~ 271 (693)
+.+...+.-++|+|.+...
T Consensus 164 ~~i~~~~~~~vVIDSIq~l 182 (454)
T TIGR00416 164 ANIEEENPQACVIDSIQTL 182 (454)
T ss_pred HHHHhcCCcEEEEecchhh
Confidence 4454446678999998653
No 386
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.049 Score=51.42 Aligned_cols=47 Identities=28% Similarity=0.302 Sum_probs=32.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKL 230 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 230 (693)
..+|+|-||=|+||||||+.+.++.... +++-.+.+++-+.....++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhH
Confidence 4689999999999999999999987643 2333344444444444444
No 387
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.88 E-value=0.41 Score=49.51 Aligned_cols=38 Identities=39% Similarity=0.449 Sum_probs=29.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEe
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEV 217 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 217 (693)
+..+++++|++|+||||++..++...... -..+..++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEec
Confidence 46899999999999999999999887654 224555544
No 388
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.87 E-value=0.041 Score=60.58 Aligned_cols=60 Identities=25% Similarity=0.268 Sum_probs=46.2
Q ss_pred CCCCCccccchHHHHHHHHHHHhc-----CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEE
Q 036977 153 DGKDNEAFDSRMKVFQDVMEALKD-----DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAE 216 (693)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (693)
.|....++.-..+.++++..||.+ ...+++.+.|++|+||||.++.++++.. |+.+=|.+
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 344455566667888899999863 2357999999999999999999999864 66666764
No 389
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.85 E-value=0.13 Score=58.87 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+-..|+|+|.+|+|||||++.+..-...
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4578999999999999999999876554
No 390
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.84 E-value=0.1 Score=48.55 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=46.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC-Cc
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQE-KR 260 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~-k~ 260 (693)
+.|.|.+|+|||++|.++... ....++|+.-.+.++. ++.+.|.+........ ....+....+.+.+... +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~-w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAH-WRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCC-ceEeecHHHHHHHHHhcCCC
Confidence 679999999999999999765 1346777776666654 3444443322222111 22222233444444321 23
Q ss_pred EEEEEeCCC
Q 036977 261 VLIILDNIW 269 (693)
Q Consensus 261 ~LlVlDdv~ 269 (693)
-.+++|.+.
T Consensus 75 ~~VLIDclt 83 (169)
T cd00544 75 DVVLIDCLT 83 (169)
T ss_pred CEEEEEcHh
Confidence 479999864
No 391
>COG3910 Predicted ATPase [General function prediction only]
Probab=94.84 E-value=0.095 Score=48.37 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=72.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc-----CCCCEEE-----------------------EEEecCCCChHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED-----KLIDKVV-----------------------MAEVTQNPDPQKIQDK 229 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~F~~~~-----------------------wv~vs~~~~~~~~~~~ 229 (693)
+.+|..|+|..|+||+||...++-...-. +.|..-+ |...-.-+++..-+.+
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De 115 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDE 115 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHh
Confidence 57899999999999999999987664311 1121111 1111111223332233
Q ss_pred HHHHhC--CC-CCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc-CccccCCCCCCcccccccccCCCeEEEEecCCh
Q 036977 230 LASDLG--MK-FDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL-ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSR 305 (693)
Q Consensus 230 i~~~l~--~~-~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~ 305 (693)
....-+ .. ......-+.-...+.+.+.+ .=+-|||+..... ...++. +...++.....|+.||+.|+++
T Consensus 116 ~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~--~GiYiLDEPEa~LSp~RQle-----lla~l~~la~sGaQ~IiATHSP 188 (233)
T COG3910 116 ADGEANYGGRSLHHMSHGESFLAIFHNRFNG--QGIYILDEPEAALSPSRQLE-----LLAILRDLADSGAQIIIATHSP 188 (233)
T ss_pred hhhhcccCCcchhhhccchHHHHHHHHHhcc--CceEEecCccccCCHHHHHH-----HHHHHHHHHhcCCeEEEEecCh
Confidence 221111 11 11112234455666667765 3688899976542 111110 1112233356789999999999
Q ss_pred hhhhhhcCCCcEEEcCC
Q 036977 306 DLLCIDMNSQKIFWIDA 322 (693)
Q Consensus 306 ~v~~~~~~~~~~~~l~~ 322 (693)
.+. .++...+++++.
T Consensus 189 iLl--AiP~A~I~~~~~ 203 (233)
T COG3910 189 ILL--AIPGAEIYEISE 203 (233)
T ss_pred hhe--eCCCcEEEEEec
Confidence 774 345556666544
No 392
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.83 E-value=0.021 Score=54.01 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999885
No 393
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.82 E-value=0.086 Score=55.68 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=38.5
Q ss_pred ccccchHHHHHHHHHHHhcC--------------CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 158 EAFDSRMKVFQDVMEALKDD--------------KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
..++|.++.++.+...+... .++-|.++|++|+|||++|+.+......
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45789998888887666431 2467899999999999999999998754
No 394
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.82 E-value=0.021 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999988753
No 395
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.82 E-value=0.13 Score=53.48 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhc
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+++.|++|+||||+++.+.+....
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~ 25 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRR 25 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999988763
No 396
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.82 E-value=0.4 Score=46.20 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=40.1
Q ss_pred CCCccccchHHHHHHHHHHH----hcCCceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 155 KDNEAFDSRMKVFQDVMEAL----KDDKLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
.+...++|-+...+.+++.- .+-...-|.+||.-|+||+.|++++.+....+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 44566778777777766543 34456778999999999999999999998765
No 397
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.81 E-value=0.1 Score=56.02 Aligned_cols=93 Identities=18% Similarity=0.352 Sum_probs=61.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHHHhCCCC------CCCCCH------
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLASDLGMKF------DLNDSI------ 244 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~------~~~~~~------ 244 (693)
+-+-++|.|.+|+|||+|+.++....... +-+.++|+-+.+... ..++.+++...=.... ....+.
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 34678999999999999999998886532 346788888877654 5556666554311110 001111
Q ss_pred HHHHHHHHHHHhc--CCcEEEEEeCCCCc
Q 036977 245 HHRASRLRERLKQ--EKRVLIILDNIWTK 271 (693)
Q Consensus 245 ~~~~~~l~~~L~~--~k~~LlVlDdv~~~ 271 (693)
...+-.+-++++. +++.|+++||+...
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 1234456677764 68999999998654
No 398
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.76 E-value=0.064 Score=60.54 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=58.8
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHh
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDL 234 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 234 (693)
.....++|+++.++.+...+... +.+.++|.+|+||||+|+.+.+.... .+++..+|..- ...+...+++.++.++
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 44567889999988888777554 47889999999999999999987533 34577777544 3446777777777766
Q ss_pred CCC
Q 036977 235 GMK 237 (693)
Q Consensus 235 ~~~ 237 (693)
|..
T Consensus 104 G~~ 106 (637)
T PRK13765 104 GKQ 106 (637)
T ss_pred CHH
Confidence 643
No 399
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.76 E-value=0.023 Score=48.49 Aligned_cols=25 Identities=44% Similarity=0.801 Sum_probs=21.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
|-|+|.+|+|||++|+.++.+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4589999999999999998887643
No 400
>PRK13409 putative ATPase RIL; Provisional
Probab=94.75 E-value=0.094 Score=59.28 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=64.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEE--E---ecCC------CChHH-------------HHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMA--E---VTQN------PDPQK-------------IQDKLASD 233 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv--~---vs~~------~~~~~-------------~~~~i~~~ 233 (693)
.-.+++|+|.+|+|||||++.++...... .+.+++ . +.+. .++.+ ...++++.
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~ 440 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKP 440 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHH
Confidence 44699999999999999999999765432 122211 1 1121 11221 12334444
Q ss_pred hCCCCCC-----CCCH-HHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCccccccccc-CCCeEEEEecCChh
Q 036977 234 LGMKFDL-----NDSI-HHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDD-QRRCTIILTSRSRD 306 (693)
Q Consensus 234 l~~~~~~-----~~~~-~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~IivTtR~~~ 306 (693)
++..... .-+. +...-.+-..|.. ++-+++||+..+..+...... +.+.++... ..|..||++|++..
T Consensus 441 l~l~~~~~~~~~~LSGGe~QRvaiAraL~~-~p~llLLDEPt~~LD~~~~~~----l~~~l~~l~~~~g~tviivsHD~~ 515 (590)
T PRK13409 441 LQLERLLDKNVKDLSGGELQRVAIAACLSR-DADLYLLDEPSAHLDVEQRLA----VAKAIRRIAEEREATALVVDHDIY 515 (590)
T ss_pred CCCHHHHhCCcccCCHHHHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHH----HHHHHHHHHHhCCCEEEEEeCCHH
Confidence 4432100 1111 2222334455555 678999999776544322111 111122222 23667999999987
Q ss_pred hh
Q 036977 307 LL 308 (693)
Q Consensus 307 v~ 308 (693)
.+
T Consensus 516 ~~ 517 (590)
T PRK13409 516 MI 517 (590)
T ss_pred HH
Confidence 65
No 401
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.75 E-value=0.092 Score=48.02 Aligned_cols=123 Identities=20% Similarity=0.239 Sum_probs=61.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecC---CCChHHHHHHHH----HHhCCCC--CCCCCHH-----
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQ---NPDPQKIQDKLA----SDLGMKF--DLNDSIH----- 245 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~----~~l~~~~--~~~~~~~----- 245 (693)
..|-|++..|.||||+|..++-..... -..+.++..-. .......++.+- .+.+... ......+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~--g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH--GYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 567888999999999999988776544 22344433322 223333332220 0001110 0001111
Q ss_pred -HHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhh
Q 036977 246 -HRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 246 -~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v 307 (693)
......++.+..+.-=|+|||++-....+..+ +...+.+++.. ...+.-+|+|.|+..-
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli--~~~~v~~ll~~-rp~~~evIlTGr~~p~ 140 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLL--DVEEVVDLLKA-KPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCC--CHHHHHHHHHc-CCCCCEEEEECCCCCH
Confidence 12334455555545569999998654222211 00001111111 4456779999999763
No 402
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.74 E-value=0.086 Score=56.49 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=35.5
Q ss_pred ccccchHHHHHHHHHHHhc-------C---------CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 158 EAFDSRMKVFQDVMEALKD-------D---------KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..++|.+..++.+...+.+ . ....+.++|++|+|||++|+.++....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3478999988877655421 0 125689999999999999999987653
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.74 E-value=0.15 Score=47.31 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
++..|+|+.|.|||++.+.+.--.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999975543
No 404
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.74 E-value=0.03 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...|.|+|++|+||||+|+.+++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999864
No 405
>PRK06217 hypothetical protein; Validated
Probab=94.73 E-value=0.025 Score=53.67 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.|.|.|.+|+||||+|+.+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4899999999999999999988654
No 406
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.72 E-value=0.046 Score=56.73 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=40.4
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+.+...++|.+..+..+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 34567789999999988766654555668999999999999999998765
No 407
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.72 E-value=0.24 Score=49.80 Aligned_cols=89 Identities=17% Similarity=0.201 Sum_probs=52.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC-ChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP-DPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLK 256 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (693)
+..+++++|.+|+||||+++.+......+ -..+.+++..... ....-++...+.++.+.....+.......+. .++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~-~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALT-YFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHH-HHH
Confidence 45799999999999999999998876543 2345666654322 1222223444445544333244444444333 333
Q ss_pred c-CCcEEEEEeCCC
Q 036977 257 Q-EKRVLIILDNIW 269 (693)
Q Consensus 257 ~-~k~~LlVlDdv~ 269 (693)
. .+.=++++|..-
T Consensus 151 ~~~~~D~ViIDt~G 164 (270)
T PRK06731 151 EEARVDYILIDTAG 164 (270)
T ss_pred hcCCCCEEEEECCC
Confidence 2 234688889864
No 408
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.70 E-value=0.16 Score=56.03 Aligned_cols=87 Identities=18% Similarity=0.314 Sum_probs=57.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC---------------CC
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL---------------ND 242 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------------~~ 242 (693)
+-.++.|.|.+|+|||||+.+++.....+ -..++|++.-+. ..++... ++.+|.+... ..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs--~~~i~~~-~~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEES--RAQLLRN-AYSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCC--HHHHHHH-HHHcCCChHHHhhCCcEEEEEcccccC
Confidence 35799999999999999999998887543 356777776554 4444444 2455432211 12
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 036977 243 SIHHRASRLRERLKQEKRVLIILDNIW 269 (693)
Q Consensus 243 ~~~~~~~~l~~~L~~~k~~LlVlDdv~ 269 (693)
..++....+.+.+...+.-.+|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 335666667777765456678888764
No 409
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.70 E-value=0.72 Score=47.16 Aligned_cols=144 Identities=11% Similarity=0.108 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCC-ceEEEEEecCCCcHHHHHHHHHHHh--------hccCCCCEEEEEEe-cCCCChHHHHHHHHHHhCC
Q 036977 167 FQDVMEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKKV--------MEDKLIDKVVMAEV-TQNPDPQKIQDKLASDLGM 236 (693)
Q Consensus 167 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~ 236 (693)
++.+...+..++ ..+..++|..|.||+++|..+.+.. ....|-+.+.+++. +......++ +++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhcc
Confidence 344455555544 4666799999999999999998886 22223333444432 222333333 244444433
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--ccccCCCCCCcccccccccCCCeEEEEec-CChhhhhhhcC
Q 036977 237 KFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--LDAVGIPSGDVDEKDREDDQRRCTIILTS-RSRDLLCIDMN 313 (693)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~IivTt-R~~~v~~~~~~ 313 (693)
..-. .+++-++|+|+++.... .+.+...+.. ...++.+|++| ....+......
T Consensus 84 ~~~~----------------~~~~KvvII~~~e~m~~~a~NaLLK~LEE--------Pp~~t~~il~~~~~~kll~TI~S 139 (299)
T PRK07132 84 SSFV----------------QSQKKILIIKNIEKTSNSLLNALLKTIEE--------PPKDTYFLLTTKNINKVLPTIVS 139 (299)
T ss_pred CCcc----------------cCCceEEEEecccccCHHHHHHHHHHhhC--------CCCCeEEEEEeCChHhChHHHHh
Confidence 2210 12567888999875532 2333222222 33456566555 44444333344
Q ss_pred CCcEEEcCCCCHHHHHHHHHHh
Q 036977 314 SQKIFWIDALSKEEALHLAKLQ 335 (693)
Q Consensus 314 ~~~~~~l~~L~~~ea~~Lf~~~ 335 (693)
....+++.+++.++..+.+...
T Consensus 140 Rc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 140 RCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred CeEEEECCCCCHHHHHHHHHHc
Confidence 5678999999999888776653
No 410
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.70 E-value=0.098 Score=57.76 Aligned_cols=28 Identities=36% Similarity=0.493 Sum_probs=24.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.-..++|+|..|.|||||.+.+......
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~~ 55 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELEP 55 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 3467999999999999999999988754
No 411
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.68 E-value=0.02 Score=49.78 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=18.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
|.|+|.+|+||||+|+.++......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 6799999999999999999987654
No 412
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.65 E-value=0.032 Score=52.53 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.++|.+.|++|+||||+|+.+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 36899999999999999999988753
No 413
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.65 E-value=0.015 Score=60.00 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=15.7
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD 588 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~ 588 (693)
.+|+.|.+..|......-....-.+.+.|+.|++.+|.
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 35555555555543221111111234445555555543
No 414
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.63 E-value=0.033 Score=53.69 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.-.+++|+|.+|+|||||++.+..-.+.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 4578999999999999999999876543
No 415
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.63 E-value=0.027 Score=53.12 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+|+|.|.+|+||||||+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988764
No 416
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.62 E-value=0.045 Score=51.91 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=30.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEec
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVT 218 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 218 (693)
.+++.|+|+.|+|||||++.+......+ |...+..+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeeccc
Confidence 4789999999999999999999986644 6555555443
No 417
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.62 E-value=0.061 Score=54.17 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.0
Q ss_pred HHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 172 EALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 172 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
..+...+..++.|+|.+|+|||||+..+.+.....
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 33445578999999999999999999999987644
No 418
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.62 E-value=0.22 Score=53.64 Aligned_cols=93 Identities=22% Similarity=0.364 Sum_probs=59.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHHHhCCCC------CCCCCHH-----
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLASDLGMKF------DLNDSIH----- 245 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~------~~~~~~~----- 245 (693)
+-+-++|.|.+|+|||||+.++......+. -+.++++-+.+... +.++.+++...=.... ....+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 446789999999999999999988876542 24677887876643 5666666654321110 0012121
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEeCCCCc
Q 036977 246 -HRASRLRERLK--QEKRVLIILDNIWTK 271 (693)
Q Consensus 246 -~~~~~l~~~L~--~~k~~LlVlDdv~~~ 271 (693)
...-.+-++++ .++++|+++|++...
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 22334566663 358999999998654
No 419
>PLN02165 adenylate isopentenyltransferase
Probab=94.60 E-value=0.043 Score=56.31 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=25.5
Q ss_pred hcCCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 175 KDDKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 175 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+....+++|+|+.|+||||||..++....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 344567999999999999999999998854
No 420
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.60 E-value=0.041 Score=57.24 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=42.8
Q ss_pred CCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 156 DNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+...++|.++.+..++..+.+.+.+-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999888888888788999999999999999987754
No 421
>PF13245 AAA_19: Part of AAA domain
Probab=94.59 E-value=0.079 Score=41.91 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=19.0
Q ss_pred CceEEEEEecCCCcHHHH-HHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTL-VKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtL-a~~v~~~~ 203 (693)
+.+++.|.|++|.|||++ ++.+.+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 457788999999999954 44444444
No 422
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.58 E-value=0.14 Score=52.48 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=42.3
Q ss_pred CccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHH
Q 036977 157 NEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQK 225 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 225 (693)
.+.++=..+....++.++..+ +.|.|.|.+|+||||+|+.++...... .+.|.++...+..+
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~D 105 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRID 105 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhh
Confidence 344554555666677777543 468999999999999999999987632 23455555544443
No 423
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.58 E-value=0.39 Score=49.81 Aligned_cols=38 Identities=29% Similarity=0.590 Sum_probs=30.0
Q ss_pred HHHHHHh--cCCceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 169 DVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 169 ~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
.+++.+. ..+..+|+|.|.+|+|||||+..+....+..
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4444443 3567899999999999999999998887754
No 424
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.57 E-value=0.096 Score=59.24 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=52.0
Q ss_pred CccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCC
Q 036977 157 NEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGM 236 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (693)
...++|+++.++.+...+... +.+.++|++|+||||+|+.+.+..... .|...+++. ....+...+++.+...++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~-n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYP-NPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence 466789999888877777654 356699999999999999999876543 333333332 2223455567777666654
No 425
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=1.3 Score=49.30 Aligned_cols=71 Identities=23% Similarity=0.304 Sum_probs=47.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEK 259 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (693)
.-|.++|++|.|||-||.+++.....+ +|+|..+ +++ .+.+|.+ ++....+..+-+.-+
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL---~KyIGaS-------Eq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELL---SKYIGAS-------EQNVRDLFERAQSAK 760 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHH---HHHhccc-------HHHHHHHHHHhhccC
Confidence 457899999999999999999876543 3555443 122 2233322 233444555555559
Q ss_pred cEEEEEeCCCCc
Q 036977 260 RVLIILDNIWTK 271 (693)
Q Consensus 260 ~~LlVlDdv~~~ 271 (693)
+|++.||+.++.
T Consensus 761 PCiLFFDEfdSi 772 (952)
T KOG0735|consen 761 PCILFFDEFDSI 772 (952)
T ss_pred CeEEEecccccc
Confidence 999999999876
No 426
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.24 Score=47.78 Aligned_cols=74 Identities=24% Similarity=0.269 Sum_probs=45.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLK 256 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (693)
+.++-|.++|++|.|||.||++|+++.... | +.|-.. ++. -+.+|.. ......+.+.-+
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~--f-----irvvgs----efv---qkylgeg-------prmvrdvfrlak 245 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA--F-----IRVVGS----EFV---QKYLGEG-------PRMVRDVFRLAK 245 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchh--e-----eeeccH----HHH---HHHhccC-------cHHHHHHHHHHh
Confidence 467788999999999999999999886543 3 222110 111 1223322 123444555555
Q ss_pred cCCcEEEEEeCCCCc
Q 036977 257 QEKRVLIILDNIWTK 271 (693)
Q Consensus 257 ~~k~~LlVlDdv~~~ 271 (693)
..-+.+|.+|+++..
T Consensus 246 enapsiifideidai 260 (408)
T KOG0727|consen 246 ENAPSIIFIDEIDAI 260 (408)
T ss_pred ccCCcEEEeehhhhH
Confidence 556788889988754
No 427
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.12 Score=57.76 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=60.9
Q ss_pred ccccchHHHHHHHHHHHhc---------CC---ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHH
Q 036977 158 EAFDSRMKVFQDVMEALKD---------DK---LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQK 225 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~---------~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 225 (693)
+++-|-++.+.+|.+.+.- .+ -.=|.++|++|.|||-+|++|+.+.... |++|..+ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH----H
Confidence 4566888888888887731 12 3467899999999999999999886543 3444332 2
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc
Q 036977 226 IQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL 272 (693)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~ 272 (693)
++... +| .+ ++-...+.++-+..++|+|.||++++..
T Consensus 741 LLNMY---VG------qS-E~NVR~VFerAR~A~PCVIFFDELDSlA 777 (953)
T KOG0736|consen 741 LLNMY---VG------QS-EENVREVFERARSAAPCVIFFDELDSLA 777 (953)
T ss_pred HHHHH---hc------ch-HHHHHHHHHHhhccCCeEEEeccccccC
Confidence 22221 22 11 2233444444455589999999998763
No 428
>PRK13768 GTPase; Provisional
Probab=94.49 E-value=0.2 Score=50.12 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=27.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEe
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEV 217 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 217 (693)
.++.|.|.+|+||||++..+.......+ ..++.++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcC--CceEEEEC
Confidence 5789999999999999999988876542 24445544
No 429
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.48 E-value=0.077 Score=54.59 Aligned_cols=49 Identities=31% Similarity=0.390 Sum_probs=37.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 229 (693)
.+++.+.|.|||||||.|.+.+-.....+ ..+.-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999777766553 45777877777776665554
No 430
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.47 E-value=0.029 Score=50.83 Aligned_cols=24 Identities=46% Similarity=0.630 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998754
No 431
>PHA02774 E1; Provisional
Probab=94.47 E-value=0.18 Score=55.32 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcC-CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 165 KVFQDVMEALKDD-KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 165 ~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
..+..+..++... +-..+.|+|++|.|||.+|..+.+-.. -..+.|++....
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~s~ 471 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSKSH 471 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECccc
Confidence 3455666666433 235899999999999999999998864 234566765433
No 432
>PRK13949 shikimate kinase; Provisional
Probab=94.46 E-value=0.032 Score=52.11 Aligned_cols=24 Identities=42% Similarity=0.440 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
-|.|+|++|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998865
No 433
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.45 E-value=0.1 Score=49.72 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=66.7
Q ss_pred HHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhcc-CCCC--EEEEEEecCCCC-----hHHHHHHHHHHhCCCCCCC
Q 036977 170 VMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMED-KLID--KVVMAEVTQNPD-----PQKIQDKLASDLGMKFDLN 241 (693)
Q Consensus 170 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~--~~~wv~vs~~~~-----~~~~~~~i~~~l~~~~~~~ 241 (693)
++..+-+.+..-..|.|++|+|||||.+.+++-.... +.|- .+.-|+-++... ..+ ..+...+..
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq--~~~g~R~dV----- 200 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQ--HGRGRRMDV----- 200 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCch--hhhhhhhhh-----
Confidence 4444544555557899999999999999999987754 2343 233333332210 000 011111111
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhh
Q 036977 242 DSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 242 ~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v 307 (693)
.+..-..+-+....+..-+-++|.|++-..++-..+... .+.|.+++.|.+-..+
T Consensus 201 ld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta-----------~~~GVkli~TaHG~~i 255 (308)
T COG3854 201 LDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTA-----------LHAGVKLITTAHGNGI 255 (308)
T ss_pred cccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHH-----------HhcCcEEEEeeccccH
Confidence 111112233344444446789999999887665554333 4568888877665444
No 434
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.44 E-value=0.029 Score=53.01 Aligned_cols=24 Identities=42% Similarity=0.564 Sum_probs=21.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
++++|+|++|+|||||++.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999853
No 435
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.44 E-value=0.044 Score=53.10 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=27.4
Q ss_pred HHhcCCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 173 ALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 173 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+...++++|+++|..|+|||||...+.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34456899999999999999999999988754
No 436
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.44 E-value=0.036 Score=50.88 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
|++|+|..|+|||||+..+....+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999988754
No 437
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.43 E-value=0.029 Score=51.17 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
++.++|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998873
No 438
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.42 E-value=0.041 Score=50.30 Aligned_cols=29 Identities=31% Similarity=0.634 Sum_probs=26.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDK 207 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 207 (693)
.++++|+|..|+|||||...+....+.++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 47899999999999999999999988763
No 439
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.39 E-value=0.036 Score=53.60 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
...+|+|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999874
No 440
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.38 E-value=0.22 Score=49.53 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=33.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccCC----------CCEEEEEEecCCCC-hHHHHHHHHHHh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVMEDKL----------IDKVVMAEVTQNPD-PQKIQDKLASDL 234 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------F~~~~wv~vs~~~~-~~~~~~~i~~~l 234 (693)
+..|+|++|+|||+||..++-....... -..+++++.-...+ +..-+..+...+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 5679999999999999999877543211 12466666554432 333344444443
No 441
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.37 E-value=0.061 Score=51.75 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=25.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.+..+|+|+|++|+||||+|+.+......
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999987643
No 442
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.37 E-value=0.039 Score=57.03 Aligned_cols=112 Identities=18% Similarity=0.126 Sum_probs=58.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
....+.|+|..|+||||+++.+....... ..++.+.=........ .....-...........-.....+...++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcC
Confidence 34789999999999999999998775432 1222221111111110 000000000000011122344556666766
Q ss_pred CCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeE-EEEecCChhh
Q 036977 258 EKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCT-IILTSRSRDL 307 (693)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-IivTtR~~~v 307 (693)
.+=.+++|++.+.+.+..+... ..|.. ++.|++....
T Consensus 218 -~pd~ii~gE~r~~e~~~~l~a~------------~~g~~~~i~T~Ha~~~ 255 (308)
T TIGR02788 218 -RPDRIILGELRGDEAFDFIRAV------------NTGHPGSITTLHAGSP 255 (308)
T ss_pred -CCCeEEEeccCCHHHHHHHHHH------------hcCCCeEEEEEeCCCH
Confidence 6778999999876555433221 12322 4777777664
No 443
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.35 E-value=0.049 Score=60.74 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=40.8
Q ss_pred CCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 156 DNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
....++|.+..++.+...+......-+.|+|.+|+|||++|+.+++..+
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999998887666666778999999999999999987643
No 444
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.34 E-value=0.063 Score=49.11 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 167 FQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 167 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
++.+.+++.+ ++++++|.+|+|||||++.+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 4566666633 899999999999999999998764
No 445
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.32 E-value=0.11 Score=55.12 Aligned_cols=103 Identities=28% Similarity=0.380 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHH--HHHHHHHhCCCCCCC
Q 036977 164 MKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKI--QDKLASDLGMKFDLN 241 (693)
Q Consensus 164 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~--~~~i~~~l~~~~~~~ 241 (693)
...++.+++.+.......+.|.|.||.|||+|.+++.+..+.. -..++ +..+.......+ -..+-..++.+....
T Consensus 7 ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~--~~~~~-~~a~tg~AA~~i~~G~T~hs~f~i~~~~~ 83 (364)
T PF05970_consen 7 RRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR--GKKVL-VTAPTGIAAFNIPGGRTIHSFFGIPINNN 83 (364)
T ss_pred HHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc--cceEE-EecchHHHHHhccCCcchHHhcCcccccc
Confidence 3445666666666777899999999999999999999987653 22222 222222111111 122333334333221
Q ss_pred C-C--HHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 242 D-S--IHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 242 ~-~--~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
. + .......+.+.++. --+||+|++.-.
T Consensus 84 ~~~~~~~~~~~~~~~~l~~--~~~lIiDEism~ 114 (364)
T PF05970_consen 84 EKSQCKISKNSRLRERLRK--ADVLIIDEISMV 114 (364)
T ss_pred ccccccccccchhhhhhhh--heeeecccccch
Confidence 0 0 01122345555554 358999998744
No 446
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.31 E-value=0.036 Score=52.03 Aligned_cols=25 Identities=44% Similarity=0.511 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.|.|.|.+|+||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999543
No 447
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.30 E-value=0.35 Score=51.92 Aligned_cols=93 Identities=22% Similarity=0.371 Sum_probs=60.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC-ChHHHHHHHHHHhCCCC------CCCCCHH-----
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP-DPQKIQDKLASDLGMKF------DLNDSIH----- 245 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~----- 245 (693)
+-+-++|.|.+|+|||||+.++......+. -..++++-+.+.. ...+++.++...=.... ....+..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 446789999999999999999988765432 3467788787664 35666666654321111 1112221
Q ss_pred -HHHHHHHHHHhc--CCcEEEEEeCCCCc
Q 036977 246 -HRASRLRERLKQ--EKRVLIILDNIWTK 271 (693)
Q Consensus 246 -~~~~~l~~~L~~--~k~~LlVlDdv~~~ 271 (693)
...-.+-++++. ++++|+++||+...
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 133456677754 58999999998754
No 448
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.30 E-value=0.078 Score=54.64 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=38.4
Q ss_pred CccccchHHHHHH---HHHHHhcCC--ceEEEEEecCCCcHHHHHHHHHHHhhccCCC
Q 036977 157 NEAFDSRMKVFQD---VMEALKDDK--LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLI 209 (693)
Q Consensus 157 ~~~~~gR~~~~~~---l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 209 (693)
..++||..+..+. +++++.+.+ -+.+.+.|++|.|||+||..+.+....+-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 4688998776653 566666554 5899999999999999999999998876334
No 449
>PF13479 AAA_24: AAA domain
Probab=94.28 E-value=0.15 Score=49.67 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=23.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
-.+.|+|.+|+||||+|..+ +..++++....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 46789999999999999876 44566665443
No 450
>PRK08149 ATP synthase SpaL; Validated
Probab=94.28 E-value=0.16 Score=54.39 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=53.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCCC------CCCCCH------
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMKF------DLNDSI------ 244 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~------~~~~~~------ 244 (693)
+-..++|+|.+|+|||||++.++.... -+.+++..+... ....++..+......... ....+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 457899999999999999999987543 234444555443 345555555554322110 001111
Q ss_pred HHHHHHHHHHHh-cCCcEEEEEeCCCCc
Q 036977 245 HHRASRLRERLK-QEKRVLIILDNIWTK 271 (693)
Q Consensus 245 ~~~~~~l~~~L~-~~k~~LlVlDdv~~~ 271 (693)
......+-+++. .++++|+++||+-..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 122334445553 258999999998654
No 451
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.26 E-value=0.95 Score=45.83 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 166 VFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 166 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-+.+...+..+++ ....++|+.|+||+++|..++...-
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 34566666766554 5677999999999999998887754
No 452
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.26 E-value=0.087 Score=57.43 Aligned_cols=93 Identities=22% Similarity=0.245 Sum_probs=51.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEE-EEEEecCCCC-hHHHHHHHHHHh-CCCCCCCCCH----HHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKV-VMAEVTQNPD-PQKIQDKLASDL-GMKFDLNDSI----HHRASR 250 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~vs~~~~-~~~~~~~i~~~l-~~~~~~~~~~----~~~~~~ 250 (693)
.-+-..|+|.+|+|||||++.|++..... +-+.. +++-|.+... +.++.+.+-..+ -...+.+... ..+.-.
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999877542 23433 4555565543 233322220000 0111111111 112233
Q ss_pred HHHHH-hcCCcEEEEEeCCCCc
Q 036977 251 LRERL-KQEKRVLIILDNIWTK 271 (693)
Q Consensus 251 l~~~L-~~~k~~LlVlDdv~~~ 271 (693)
+-+++ ..++.+||++|++...
T Consensus 494 ~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchHH
Confidence 44444 3468899999998644
No 453
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.24 E-value=0.043 Score=48.49 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=39.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ 257 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (693)
+-|.|.|-+|+||||++..++....- -|+++|.-..-..+....=... +.. ..+.+.....|...+..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~vkEn~l~~gyDE~y--~c~-i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDLVKENNLYEGYDEEY--KCH-ILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhHHhhhcchhcccccc--cCc-cccHHHHHHHHHHHHhc
Confidence 45789999999999999999965432 3566654322222111110000 001 24566677777777765
No 454
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.24 E-value=0.04 Score=47.85 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhc
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
|.|+|..|+|||||.+.++.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999987544
No 455
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.24 E-value=0.17 Score=54.07 Aligned_cols=47 Identities=21% Similarity=0.127 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHHHh-------c---C--------CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 158 EAFDSRMKVFQDVMEALK-------D---D--------KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~-------~---~--------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..++|.++.++.+...+. . . ....+.++|++|+|||++|+.++....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 456899999888876551 1 1 125799999999999999999997654
No 456
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.24 E-value=0.1 Score=55.97 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=50.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHh-----CCCCCCCCCHH------H
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDL-----GMKFDLNDSIH------H 246 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l-----~~~~~~~~~~~------~ 246 (693)
.-..++|+|.+|+|||||++.++..... ...+++..--...++.++....+... +.-.....+.. .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 3468999999999999999988765432 22344443223334444444333322 11111111111 1
Q ss_pred HHHHHHHHHh-cCCcEEEEEeCCCCc
Q 036977 247 RASRLRERLK-QEKRVLIILDNIWTK 271 (693)
Q Consensus 247 ~~~~l~~~L~-~~k~~LlVlDdv~~~ 271 (693)
..-.+-+++. .+++.|+++||+...
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHHH
Confidence 2233444443 258899999998654
No 457
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.23 E-value=0.19 Score=53.72 Aligned_cols=90 Identities=20% Similarity=0.317 Sum_probs=54.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHHHhCCCC------CCCCCHH-----
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLASDLGMKF------DLNDSIH----- 245 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~------~~~~~~~----- 245 (693)
....++|+|.+|+|||||++.++.... .+.++++-+.+... ..++...++..-+... ....+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 457899999999999999999986432 35566666766544 4556665544322111 0011111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCCc
Q 036977 246 -HRASRLRERLK-QEKRVLIILDNIWTK 271 (693)
Q Consensus 246 -~~~~~l~~~L~-~~k~~LlVlDdv~~~ 271 (693)
..+-.+-++++ .++++|+++||+...
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 12233445553 258999999998654
No 458
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.23 E-value=0.46 Score=47.18 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=34.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLA 231 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 231 (693)
-.++.|.|.+|+|||+++..++.+...+. =..++|++... +..++...++
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHH
Confidence 46899999999999999999887765431 23567776654 3344444443
No 459
>PRK14530 adenylate kinase; Provisional
Probab=94.23 E-value=0.041 Score=53.73 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+.|.|+|++|+||||+|+.+++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988764
No 460
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.23 E-value=0.042 Score=59.21 Aligned_cols=151 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred cccccccccccCccccccccCC---Ccc----cccCCCCC--CcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEE
Q 036977 513 QKCYEEMIGFRDIKDLQLSHFP---RLQ----EIWHGQAL--PVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLE 583 (693)
Q Consensus 513 ~~l~~l~~~~~~l~~l~~~~~~---~L~----~~~~~~~~--~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~ 583 (693)
..+..+.+.++.+..++..... +|+ .......+ +...+++|+.|.+.++.-. ..+...+.++.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~---~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS---DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh---hhhhhhhhhhhhhhee
Q ss_pred ecCCCCCccccc-------cceeccCCCCcccc---cCCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccccccc
Q 036977 584 VRNCDSLEEVLH-------LEELNAKEEHIGPL---FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMET 653 (693)
Q Consensus 584 l~~c~~l~~l~~-------L~~L~l~~~~l~~~---~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~ 653 (693)
+++. .+..+|. |++|.++++.+... +.++.++..+.+.+ ..+..+|..++.+++|++|+++++ .+..
T Consensus 193 ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n-~i~~ 269 (394)
T COG4886 193 LSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNN-QISS 269 (394)
T ss_pred ccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccchhccccccceeccccc-cccc
Q ss_pred ccccccccceeeccccc
Q 036977 654 FISNSTSVLHMTADNKE 670 (693)
Q Consensus 654 lp~~~~~l~~l~~~~~~ 670 (693)
++. ...+..++.-++.
T Consensus 270 i~~-~~~~~~l~~L~~s 285 (394)
T COG4886 270 ISS-LGSLTNLRELDLS 285 (394)
T ss_pred ccc-ccccCccCEEecc
No 461
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.22 E-value=0.24 Score=47.96 Aligned_cols=88 Identities=26% Similarity=0.394 Sum_probs=54.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC-ChHHHHHHHHHHhCCCC------CCCCCHHH-----
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP-DPQKIQDKLASDLGMKF------DLNDSIHH----- 246 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 246 (693)
-+-++|.|.+|+|||+|+..+.+... -+.++++.+.+.. ...++.+++...-..+. ...+....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 36789999999999999999999875 3455888887664 45566665533210000 00112211
Q ss_pred -HHHHHHHHHh-cCCcEEEEEeCCCC
Q 036977 247 -RASRLRERLK-QEKRVLIILDNIWT 270 (693)
Q Consensus 247 -~~~~l~~~L~-~~k~~LlVlDdv~~ 270 (693)
..-.+-+++. .+++.|+++||+..
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred ccchhhhHHHhhcCCceeehhhhhHH
Confidence 1223344443 25899999999753
No 462
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.21 E-value=0.042 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVA 200 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~ 200 (693)
-..++|+|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999986
No 463
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.21 E-value=0.034 Score=49.92 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.++|+|++|+|||||++.+.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999764
No 464
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.19 E-value=0.4 Score=51.87 Aligned_cols=94 Identities=13% Similarity=0.177 Sum_probs=56.2
Q ss_pred CceEEEEEecCCCcHHHHH-HHHHHHhhcc-----CCCCEEEEEEecCCCChHHHHHHHHHHhC-CCC------CCCCCH
Q 036977 178 KLNIIGVYGMGGVGKTTLV-KQVAKKVMED-----KLIDKVVMAEVTQNPDPQKIQDKLASDLG-MKF------DLNDSI 244 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~------~~~~~~ 244 (693)
+-+-++|.|..|+|||+|| ..+.++.... +.-..++++-+++..+...-+.+.++.-+ ... ...++.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 6667765321 23467889999887654333444444433 111 001111
Q ss_pred H------HHHHHHHHHHh-cCCcEEEEEeCCCCc
Q 036977 245 H------HRASRLRERLK-QEKRVLIILDNIWTK 271 (693)
Q Consensus 245 ~------~~~~~l~~~L~-~~k~~LlVlDdv~~~ 271 (693)
. -....+-+++. .+++.|+|+||+...
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1 12233444443 258899999998755
No 465
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.18 E-value=0.27 Score=52.69 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=55.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHHHhCCCC------CCCCCH------
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLASDLGMKF------DLNDSI------ 244 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~------~~~~~~------ 244 (693)
+-+.++|+|.+|+|||||++.+++.... +.++++-+.+... ..++..+.+..-+... ....+.
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~----d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA----DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC----CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 4578999999999999999999977643 4555666766544 4455544443322111 001111
Q ss_pred HHHHHHHHHHHh-cCCcEEEEEeCCCCc
Q 036977 245 HHRASRLRERLK-QEKRVLIILDNIWTK 271 (693)
Q Consensus 245 ~~~~~~l~~~L~-~~k~~LlVlDdv~~~ 271 (693)
....-.+-++++ .+++.|+++||+-..
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 112333455553 358999999998654
No 466
>PRK14527 adenylate kinase; Provisional
Probab=94.18 E-value=0.045 Score=52.32 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
...+|.|+|++|+||||+|+.+++....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999887653
No 467
>PRK13947 shikimate kinase; Provisional
Probab=94.17 E-value=0.04 Score=51.56 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=22.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
-|.|+|++|+||||+|+.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999988653
No 468
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.16 E-value=0.087 Score=54.24 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=33.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHH
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQ 227 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 227 (693)
+++.+.|-||+||||+|.+.+-....++ ..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 6889999999999999988887766542 346666666555554443
No 469
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.14 E-value=0.09 Score=51.75 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=28.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh-----ccCCCCEEEEEEecCCCChHHHHHHH
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM-----EDKLIDKVVMAEVTQNPDPQKIQDKL 230 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~F~~~~wv~vs~~~~~~~~~~~i 230 (693)
+..|+|++|.||||++..+..... .....+..+-++...+..+..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l 73 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERL 73 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHH
Confidence 789999999999987777777762 11223444444444444444444443
No 470
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.13 E-value=0.044 Score=50.98 Aligned_cols=24 Identities=46% Similarity=0.618 Sum_probs=20.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhc
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
|.|.|.+|+|||||++.+++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998753
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.13 E-value=0.038 Score=52.56 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=21.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.+++|+|++|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 472
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.12 E-value=0.046 Score=54.07 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=23.0
Q ss_pred EEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEe
Q 036977 184 VYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEV 217 (693)
Q Consensus 184 I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 217 (693)
|+|++|+||||+++.+.+.....+ ..++.|++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEc
Confidence 689999999999999999887652 33444544
No 473
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.11 E-value=0.021 Score=62.94 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=11.6
Q ss_pred ccCcceeeecCCCC
Q 036977 550 FNNLRELVVDDCTN 563 (693)
Q Consensus 550 ~~~L~~L~i~~c~~ 563 (693)
|..||.|++.+|+-
T Consensus 108 F~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDL 121 (1096)
T ss_pred ccceeeEEecCcch
Confidence 66999999998863
No 474
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.06 E-value=0.21 Score=49.68 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=61.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhHHHHHH-hhcCCcchHHHHHHHHHHHHHHHHHHHhHHHhHHHHhhhccccCCCCch
Q 036977 33 KYQSYIDDLKDQVKQLGYKRETVQQPVNHA-RLQGDELYEGVTDWLHSVDEFISEGVAKSIIDDEERAKKFCFKGLCPNL 111 (693)
Q Consensus 33 ~~~~~~~~l~~~l~~l~~~l~~i~~~l~~a-e~~~~~~~~~~~~wl~~l~~~~y~~~~ed~ld~~~~~~~~~~~~~~~~~ 111 (693)
.+...+.+++++++.++..++.+|.+++.. +.+++++++ ..++..++.+.||+ +|.++|. |.+...|.+
T Consensus 311 rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAye--vEYVVDa-------Ci~k~~P~W 380 (402)
T PF12061_consen 311 RYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYE--VEYVVDA-------CISKSVPHW 380 (402)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhh--eeeeeeh-------hhcCCCcHH
Confidence 344668899999999999999999999866 665677676 99999999999999 9999996 555555555
Q ss_pred hhhcHHHHHHH
Q 036977 112 MSRYKLSKQAA 122 (693)
Q Consensus 112 ~~~~~~~~~i~ 122 (693)
.--+.+..-++
T Consensus 381 cl~~WL~dIie 391 (402)
T PF12061_consen 381 CLERWLLDIIE 391 (402)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 475
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.06 E-value=0.047 Score=51.80 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+..+|.|+|++|+|||||++.+.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998763
No 476
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.05 E-value=0.11 Score=60.18 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=43.5
Q ss_pred CccccchHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecC
Q 036977 157 NEAFDSRMKVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQ 219 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 219 (693)
...++|+...+..+.+.+. .....-|.|+|..|+|||++|+.++...... -...+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~ 437 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAA 437 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEeccc
Confidence 3468899988888876664 2334578899999999999999998875432 22445555554
No 477
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.03 E-value=0.083 Score=53.21 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=61.5
Q ss_pred HHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHH
Q 036977 171 MEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASR 250 (693)
Q Consensus 171 ~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 250 (693)
+..+......++.|.|..|+||||+++.+....... -..++.+.=........ ..++...... .......
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~--~~~iitiEdp~E~~~~~-----~~q~~v~~~~---~~~~~~~ 141 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTP--EKNIITVEDPVEYQIPG-----INQVQVNEKA---GLTFARG 141 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCC--CCeEEEECCCceecCCC-----ceEEEeCCcC---CcCHHHH
Confidence 333334456789999999999999999987765321 11223221111111110 0111111111 1134556
Q ss_pred HHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhh
Q 036977 251 LRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 251 l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v 307 (693)
++..++. .+=.|+++++.+.+........ ...|..++-|.+-.++
T Consensus 142 l~~~lR~-~PD~i~vgEiR~~e~a~~~~~a-----------a~tGh~v~tTlHa~~~ 186 (264)
T cd01129 142 LRAILRQ-DPDIIMVGEIRDAETAEIAVQA-----------ALTGHLVLSTLHTNDA 186 (264)
T ss_pred HHHHhcc-CCCEEEeccCCCHHHHHHHHHH-----------HHcCCcEEEEeccCCH
Confidence 6777776 7889999999887643322111 2335546666665554
No 478
>PRK13409 putative ATPase RIL; Provisional
Probab=94.02 E-value=0.15 Score=57.62 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+-.+++|+|.+|+|||||.+.+.....
T Consensus 98 ~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 447999999999999999999987644
No 479
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.99 E-value=0.052 Score=50.83 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...|.|+|+.|+||||+++.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35689999999999999999998754
No 480
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.98 E-value=0.048 Score=49.90 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHhh
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
|.|+|++|+||||+|+.+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999988764
No 481
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.97 E-value=0.23 Score=49.45 Aligned_cols=98 Identities=23% Similarity=0.281 Sum_probs=56.3
Q ss_pred ccchHHHHHHHHHHHh----c---CCceEEEEEecCCCcHHHHHHHHHHHhhccCCC-CEE-EEEEecCCCChHHHHHHH
Q 036977 160 FDSRMKVFQDVMEALK----D---DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLI-DKV-VMAEVTQNPDPQKIQDKL 230 (693)
Q Consensus 160 ~~gR~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~-~wv~vs~~~~~~~~~~~i 230 (693)
++|.--..+.|+..+. + .++-+++.+|.+|+||.-.++.+++.....+.- +.+ .|+..-.-+....+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i---- 159 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI---- 159 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH----
Confidence 3455445555555553 2 356799999999999999999999986543111 111 11111111111110
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 231 ASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
..-.+++...++..++.-++-|+|||+++..
T Consensus 160 ----------e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 160 ----------EDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ----------HHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 0112334555555555567899999999865
No 482
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.96 E-value=0.16 Score=48.60 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 168 QDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 168 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
.+.+..+...+-+++.|.|.+|+||||+++.+.......
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 334444444556789999999999999999988877764
No 483
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.93 E-value=0.04 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (693)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 484
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.91 E-value=0.099 Score=50.96 Aligned_cols=22 Identities=36% Similarity=0.458 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAK 201 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~ 201 (693)
++++|+|++|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 485
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.90 E-value=0.2 Score=53.68 Aligned_cols=94 Identities=21% Similarity=0.228 Sum_probs=60.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc------c-----CCCCEEEEEEecCCCChHHHHHHHHHHhC-CCC------C
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME------D-----KLIDKVVMAEVTQNPDPQKIQDKLASDLG-MKF------D 239 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~-----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~------~ 239 (693)
+-+-++|.|.+|+|||||+..+.++.+. + +.-..++++-+.+.....+.+.+.+..-+ ... .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 3467899999999999999999988652 0 00115677788888666666666665544 211 0
Q ss_pred CCCCH------HHHHHHHHHHHh--cCCcEEEEEeCCCCc
Q 036977 240 LNDSI------HHRASRLRERLK--QEKRVLIILDNIWTK 271 (693)
Q Consensus 240 ~~~~~------~~~~~~l~~~L~--~~k~~LlVlDdv~~~ 271 (693)
...+. ....-.+-++++ .+++.|+++||+...
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 01111 122344666776 358999999998654
No 486
>PRK14529 adenylate kinase; Provisional
Probab=93.89 E-value=0.24 Score=48.23 Aligned_cols=82 Identities=21% Similarity=0.107 Sum_probs=45.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhccCCCC-EE-EEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 036977 182 IGVYGMGGVGKTTLVKQVAKKVMEDKLID-KV-VMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEK 259 (693)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~-~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (693)
|.|.|++|+||||+++.++...... +.. +. +.-.+..........++++.+- ...+.+-....+.+.+....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G-----~lvpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRG-----DLVPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhcc-----CcchHHHHHHHHHHHHhccC
Confidence 7889999999999999999887643 222 11 1112222222233333333321 11233445566777775433
Q ss_pred cEEEEEeCCC
Q 036977 260 RVLIILDNIW 269 (693)
Q Consensus 260 ~~LlVlDdv~ 269 (693)
..-+|||..=
T Consensus 77 ~~g~iLDGfP 86 (223)
T PRK14529 77 KNGWLLDGFP 86 (223)
T ss_pred CCcEEEeCCC
Confidence 4568888853
No 487
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.88 E-value=0.11 Score=49.49 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=33.0
Q ss_pred CccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHH
Q 036977 157 NEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
...++|.+..+..+.-...+ ..-+.++|.+|+|||++|+.+..-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHh
Confidence 45678988888887766554 357889999999999999998754
No 488
>PRK13695 putative NTPase; Provisional
Probab=93.88 E-value=0.082 Score=49.63 Aligned_cols=25 Identities=52% Similarity=0.700 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.++|+|.+|+|||||++.+++....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999888654
No 489
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.87 E-value=0.2 Score=52.98 Aligned_cols=48 Identities=25% Similarity=0.255 Sum_probs=39.0
Q ss_pred ccccchHHHHHHHHHHHhcC--------------CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 158 EAFDSRMKVFQDVMEALKDD--------------KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
..++|.++.++.+..++... ..+.|.++|++|+|||++|+.+......
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45789999999888877430 1467899999999999999999988653
No 490
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.86 E-value=0.16 Score=48.56 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=22.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998753
No 491
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.86 E-value=0.058 Score=48.71 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.++++|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4799999999999999999888776
No 492
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.85 E-value=0.24 Score=46.09 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEec
Q 036977 160 FDSRMKVFQDVMEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVT 218 (693)
Q Consensus 160 ~~gR~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 218 (693)
++|....+.++++.+.. ....-|.|+|..|+||+.+|+.+++..... -...+-|+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~--~~pfi~vnc~ 59 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRK--NGPFISVNCA 59 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTT--TS-EEEEETT
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcc--cCCeEEEehh
Confidence 35777777777776642 333556699999999999999999854322 2234445555
No 493
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.85 E-value=0.28 Score=52.54 Aligned_cols=90 Identities=20% Similarity=0.347 Sum_probs=55.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHHHhCCCC------CCCCCHHH----
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLASDLGMKF------DLNDSIHH---- 246 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~---- 246 (693)
+-..++|.|.+|+|||||.+.+++... .+.++++-+.+... ..++....+..-+... ....+.-.
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 457899999999999999999998754 35677887876643 4444444333211110 00121211
Q ss_pred --HHHHHHHHHh-cCCcEEEEEeCCCCc
Q 036977 247 --RASRLRERLK-QEKRVLIILDNIWTK 271 (693)
Q Consensus 247 --~~~~l~~~L~-~~k~~LlVlDdv~~~ 271 (693)
..-.+-++++ .+++.|+++|++...
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1233445553 258999999998654
No 494
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.84 E-value=0.046 Score=48.95 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=23.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
..+++|+|..|+|||||.+.++.....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCEEEEEccCCCccccceeeecccccc
Confidence 468999999999999999999887654
No 495
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.84 E-value=0.32 Score=47.78 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=31.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
..++.|.|.+|+|||++|.+++...-.+ -..++|++....
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~ 55 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEER 55 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCC
Confidence 5789999999999999999988765433 356888888663
No 496
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.84 E-value=0.2 Score=57.15 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+-..++|+|..|+|||||++.+....
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55789999999999999999998875
No 497
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.82 E-value=0.021 Score=54.26 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
++.|+|..|.||||+.+.+.-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999843
No 498
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.80 E-value=0.061 Score=51.44 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 499
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.4 Score=55.50 Aligned_cols=104 Identities=17% Similarity=0.244 Sum_probs=65.6
Q ss_pred ccccchHHHHHHHHHHHhc------C--CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKD------D--KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 229 (693)
..++|.++.+..|.+.+.. + +...+.+.|+.|+|||-||++++...-.. .+..+=++.|+-..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs--e~~~IriDmse~~e------- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS--EENFIRLDMSEFQE------- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC--ccceEEechhhhhh-------
Confidence 3456777777777776642 1 35678899999999999999999887432 44455555554221
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc
Q 036977 230 LASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL 272 (693)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~ 272 (693)
+.+.++.+... -..+....|.+.++..-..+|+||||+..+
T Consensus 633 vskligsp~gy--vG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 633 VSKLIGSPPGY--VGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hhhccCCCccc--ccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 33444443322 112234467777777344588899998653
No 500
>PRK13975 thymidylate kinase; Provisional
Probab=93.79 E-value=0.058 Score=51.76 Aligned_cols=26 Identities=38% Similarity=0.486 Sum_probs=23.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
..|+|.|+.|+||||+++.+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998753
Done!