Query 036977
Match_columns 693
No_of_seqs 313 out of 3393
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 12:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-39 3.6E-44 364.4 16.7 290 161-502 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-32 4.1E-37 339.1 10.0 286 152-491 118-445 (1249)
3 1vt4_I APAF-1 related killer D 100.0 2.9E-32 1E-36 307.8 8.0 270 159-491 129-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.8E-29 2E-33 281.6 13.9 282 153-491 119-445 (591)
5 2qen_A Walker-type ATPase; unk 99.4 3.8E-12 1.3E-16 133.5 15.3 268 155-455 9-330 (350)
6 1w5s_A Origin recognition comp 99.3 3.4E-11 1.2E-15 129.3 15.7 278 158-458 22-371 (412)
7 2fna_A Conserved hypothetical 99.2 4.8E-11 1.7E-15 125.3 14.7 189 155-377 10-245 (357)
8 4fcg_A Uncharacterized protein 99.2 8.1E-11 2.8E-15 122.1 13.4 158 511-671 125-310 (328)
9 2chg_A Replication factor C sm 99.2 2.8E-10 9.5E-15 110.7 15.2 182 155-376 14-198 (226)
10 1njg_A DNA polymerase III subu 99.2 2.2E-10 7.6E-15 113.1 14.4 181 155-377 20-223 (250)
11 4fcg_A Uncharacterized protein 99.2 9.2E-11 3.2E-15 121.7 11.5 165 511-677 102-295 (328)
12 2qby_A CDC6 homolog 1, cell di 99.1 2.8E-10 9.5E-15 120.9 14.3 200 158-377 20-240 (386)
13 2qby_B CDC6 homolog 3, cell di 99.1 3E-10 1E-14 120.6 13.2 171 158-337 20-211 (384)
14 3qfl_A MLA10; coiled-coil, (CC 99.1 1.9E-10 6.4E-15 98.4 8.9 79 12-99 2-81 (115)
15 2v1u_A Cell division control p 99.1 1.3E-09 4.4E-14 115.8 14.6 201 158-376 19-243 (387)
16 1fnn_A CDC6P, cell division co 99.0 5.7E-09 1.9E-13 110.9 17.6 192 158-371 17-227 (389)
17 1sxj_B Activator 1 37 kDa subu 99.0 2.2E-09 7.5E-14 110.9 12.8 185 154-377 17-204 (323)
18 4ezg_A Putative uncharacterize 99.0 3.2E-09 1.1E-13 101.3 11.7 139 510-670 41-192 (197)
19 3e6j_A Variable lymphocyte rec 98.9 9.9E-09 3.4E-13 100.4 12.7 123 544-670 33-170 (229)
20 2o6q_A Variable lymphocyte rec 98.9 1.5E-08 5.3E-13 101.7 14.4 117 550-670 84-216 (270)
21 3m19_A Variable lymphocyte rec 98.9 1.8E-08 6.1E-13 100.1 14.6 117 550-670 58-190 (251)
22 3rfs_A Internalin B, repeat mo 98.9 3E-08 1E-12 99.8 15.3 140 511-670 61-216 (272)
23 2xwt_C Thyrotropin receptor; s 98.8 5.6E-09 1.9E-13 102.9 9.1 159 514-674 32-220 (239)
24 2o6q_A Variable lymphocyte rec 98.8 4.9E-08 1.7E-12 98.0 14.7 120 550-673 60-195 (270)
25 3zyi_A Leucine-rich repeat-con 98.8 2E-08 6.8E-13 109.1 12.5 117 550-671 122-254 (452)
26 3zyj_A Leucine-rich repeat-con 98.8 2.1E-08 7.1E-13 108.5 12.5 117 550-671 111-243 (440)
27 3o53_A Protein LRIM1, AGAP0063 98.8 8.7E-09 3E-13 106.2 9.0 74 575-649 167-248 (317)
28 1ozn_A Reticulon 4 receptor; N 98.8 2.8E-08 9.4E-13 100.7 12.3 122 550-674 79-216 (285)
29 1iqp_A RFCS; clamp loader, ext 98.8 1E-08 3.6E-13 106.0 8.7 183 155-377 22-207 (327)
30 1p9a_G Platelet glycoprotein I 98.8 2.6E-08 8.9E-13 101.1 11.4 153 512-669 30-205 (290)
31 3oja_A Leucine-rich immune mol 98.8 1.3E-08 4.3E-13 111.6 9.6 62 593-656 168-231 (487)
32 1h6u_A Internalin H; cell adhe 98.8 4.1E-08 1.4E-12 100.6 12.8 156 510-672 60-230 (308)
33 1h6t_A Internalin B; cell adhe 98.8 3E-08 1E-12 100.8 11.6 122 511-655 66-194 (291)
34 2ft3_A Biglycan; proteoglycan, 98.8 7.5E-08 2.6E-12 99.8 14.8 160 511-672 100-307 (332)
35 4ezg_A Putative uncharacterize 98.7 2.6E-08 9E-13 94.8 10.0 135 547-689 40-186 (197)
36 3zyi_A Leucine-rich repeat-con 98.7 4.5E-08 1.5E-12 106.2 12.9 156 512-670 122-301 (452)
37 1m9s_A Internalin B; cell inva 98.7 3.7E-08 1.2E-12 110.3 12.3 138 510-670 62-208 (605)
38 2v9t_B SLIT homolog 2 protein 98.7 5.8E-08 2E-12 94.2 12.1 77 570-647 73-161 (220)
39 3o6n_A APL1; leucine-rich repe 98.7 7.2E-08 2.5E-12 102.4 13.7 77 592-670 246-329 (390)
40 3zyj_A Leucine-rich repeat-con 98.7 5.5E-08 1.9E-12 105.2 12.9 155 512-669 111-289 (440)
41 2o6s_A Variable lymphocyte rec 98.7 1.2E-07 4E-12 91.1 13.7 96 550-648 51-158 (208)
42 3oja_B Anopheles plasmodium-re 98.7 6.3E-08 2.1E-12 109.0 13.7 76 592-669 252-334 (597)
43 2xwt_C Thyrotropin receptor; s 98.7 1.9E-08 6.6E-13 99.0 8.1 154 512-670 54-237 (239)
44 1p9a_G Platelet glycoprotein I 98.7 6E-08 2.1E-12 98.4 11.9 137 510-649 52-206 (290)
45 1xku_A Decorin; proteoglycan, 98.7 8.3E-08 2.8E-12 99.4 13.1 114 551-671 171-305 (330)
46 3m19_A Variable lymphocyte rec 98.7 1E-07 3.6E-12 94.5 13.2 127 544-674 28-170 (251)
47 1wwl_A Monocyte differentiatio 98.7 5.2E-08 1.8E-12 100.1 11.3 119 551-673 149-288 (312)
48 1ozn_A Reticulon 4 receptor; N 98.7 7.3E-08 2.5E-12 97.5 12.2 156 512-671 55-237 (285)
49 2chq_A Replication factor C sm 98.7 1.3E-07 4.3E-12 97.4 14.2 180 154-376 13-198 (319)
50 2ell_A Acidic leucine-rich nuc 98.7 3E-08 1E-12 91.8 8.0 94 550-648 48-157 (168)
51 2ell_A Acidic leucine-rich nuc 98.7 6.8E-08 2.3E-12 89.3 10.1 121 550-673 23-161 (168)
52 2v9t_B SLIT homolog 2 protein 98.7 8.3E-08 2.8E-12 93.1 10.9 121 545-669 26-162 (220)
53 1xku_A Decorin; proteoglycan, 98.7 1.7E-07 5.9E-12 97.0 13.9 160 511-673 98-277 (330)
54 2v70_A SLIT-2, SLIT homolog 2 98.7 1.1E-07 3.8E-12 92.2 11.4 97 550-649 56-164 (220)
55 2o6s_A Variable lymphocyte rec 98.7 1.5E-07 5.1E-12 90.4 12.2 121 546-670 23-159 (208)
56 1h6u_A Internalin H; cell adhe 98.6 1.7E-07 5.8E-12 96.1 13.1 142 510-658 82-236 (308)
57 3o6n_A APL1; leucine-rich repe 98.6 7.7E-08 2.6E-12 102.2 10.9 119 546-670 221-350 (390)
58 1jr3_A DNA polymerase III subu 98.6 2.5E-07 8.6E-12 97.5 14.4 176 156-377 14-216 (373)
59 3g06_A SSPH2 (leucine-rich rep 98.6 2E-07 6.7E-12 104.6 14.2 72 594-670 221-295 (622)
60 3rfs_A Internalin B, repeat mo 98.6 2.6E-07 9E-12 92.8 13.8 123 510-649 82-216 (272)
61 2ast_B S-phase kinase-associat 98.6 1.8E-08 6.3E-13 104.6 5.3 120 550-669 141-282 (336)
62 1jbk_A CLPB protein; beta barr 98.6 7.5E-08 2.6E-12 90.9 8.8 162 156-332 20-194 (195)
63 3e6j_A Variable lymphocyte rec 98.6 1.6E-07 5.6E-12 91.6 11.1 120 513-649 40-170 (229)
64 2z62_A TOLL-like receptor 4, v 98.6 1.1E-07 3.8E-12 95.7 10.1 117 551-671 76-212 (276)
65 4ecn_A Leucine-rich repeat pro 98.6 1.2E-07 4E-12 110.2 11.5 18 510-527 445-462 (876)
66 2z80_A TOLL-like receptor 2, v 98.6 1.4E-07 4.8E-12 98.7 11.1 118 550-670 75-209 (353)
67 3oja_B Anopheles plasmodium-re 98.6 1.1E-07 3.8E-12 107.0 11.0 118 547-670 228-356 (597)
68 3g06_A SSPH2 (leucine-rich rep 98.6 3.6E-07 1.2E-11 102.4 15.0 88 513-609 61-156 (622)
69 4fmz_A Internalin; leucine ric 98.6 2E-07 6.9E-12 97.1 11.9 155 511-670 175-344 (347)
70 2xot_A Amphoterin-induced prot 98.6 1.4E-07 4.8E-12 99.0 10.7 138 514-668 40-198 (361)
71 2je0_A Acidic leucine-rich nuc 98.6 5.9E-08 2E-12 87.8 6.7 104 550-656 16-130 (149)
72 4glp_A Monocyte differentiatio 98.6 9.2E-08 3.1E-12 98.1 8.9 120 550-673 144-286 (310)
73 2ast_B S-phase kinase-associat 98.6 2.6E-08 8.9E-13 103.4 4.6 119 550-670 117-258 (336)
74 2v70_A SLIT-2, SLIT homolog 2 98.6 1.7E-07 5.7E-12 91.0 10.0 123 545-670 26-164 (220)
75 2z66_A Variable lymphocyte rec 98.6 2.3E-07 7.9E-12 94.9 11.5 118 550-671 125-260 (306)
76 3te6_A Regulatory protein SIR3 98.6 6.5E-07 2.2E-11 90.8 14.5 172 159-338 21-213 (318)
77 2id5_A Lingo-1, leucine rich r 98.6 2.1E-07 7.2E-12 101.6 11.5 158 512-672 79-261 (477)
78 4fmz_A Internalin; leucine ric 98.6 4.5E-07 1.5E-11 94.5 13.4 158 510-673 85-257 (347)
79 1xeu_A Internalin C; cellular 98.6 2.9E-07 9.9E-12 91.9 11.4 92 550-648 62-160 (263)
80 3cvr_A Invasion plasmid antige 98.5 5.2E-07 1.8E-11 99.9 14.4 145 513-671 80-242 (571)
81 3o53_A Protein LRIM1, AGAP0063 98.5 1E-07 3.5E-12 98.1 8.0 155 512-672 79-250 (317)
82 3vq2_A TLR4, TOLL-like recepto 98.5 2.3E-07 7.9E-12 104.6 11.5 156 511-670 374-556 (606)
83 3bz5_A Internalin-J, INLJ; leu 98.5 5.8E-07 2E-11 97.4 14.0 154 512-671 126-298 (457)
84 2z62_A TOLL-like receptor 4, v 98.5 3.3E-07 1.1E-11 92.2 11.2 103 550-656 51-166 (276)
85 2id5_A Lingo-1, leucine rich r 98.5 2.8E-07 9.5E-12 100.7 11.4 119 550-672 79-213 (477)
86 2xot_A Amphoterin-induced prot 98.5 3.7E-07 1.3E-11 95.8 11.8 125 544-672 32-176 (361)
87 2z80_A TOLL-like receptor 2, v 98.5 2.3E-07 7.9E-12 97.0 10.2 119 550-672 99-235 (353)
88 2z63_A TOLL-like receptor 4, v 98.5 2.1E-07 7.2E-12 104.1 10.3 124 513-654 28-164 (570)
89 2z66_A Variable lymphocyte rec 98.5 2.1E-07 7.3E-12 95.1 9.5 119 550-673 77-213 (306)
90 4eco_A Uncharacterized protein 98.5 1.6E-07 5.5E-12 106.4 9.4 102 550-656 248-370 (636)
91 4g8a_A TOLL-like receptor 4; l 98.5 1.9E-07 6.7E-12 105.6 9.9 127 512-656 51-190 (635)
92 2wfh_A SLIT homolog 2 protein 98.5 5.5E-07 1.9E-11 85.3 11.4 102 544-649 24-137 (193)
93 2o6r_A Variable lymphocyte rec 98.5 6E-07 2.1E-11 83.6 11.4 102 545-649 22-135 (177)
94 3vq2_A TLR4, TOLL-like recepto 98.5 2.3E-07 7.9E-12 104.6 10.2 115 551-669 80-214 (606)
95 1ziw_A TOLL-like receptor 3; i 98.5 6.3E-07 2.2E-11 102.6 13.7 115 550-668 479-618 (680)
96 1m9s_A Internalin B; cell inva 98.5 3.1E-07 1.1E-11 102.8 10.8 142 510-674 40-190 (605)
97 1wwl_A Monocyte differentiatio 98.5 2.5E-07 8.5E-12 95.0 9.3 111 550-665 172-299 (312)
98 4glp_A Monocyte differentiatio 98.5 1.7E-07 5.7E-12 96.2 7.6 115 550-668 168-303 (310)
99 1w8a_A SLIT protein; signaling 98.5 5.8E-07 2E-11 85.1 10.8 103 545-649 23-137 (192)
100 1ogq_A PGIP-2, polygalacturona 98.5 6.4E-07 2.2E-11 91.9 11.8 94 552-649 175-279 (313)
101 1ogq_A PGIP-2, polygalacturona 98.5 2.4E-07 8.3E-12 95.1 8.7 118 550-672 100-234 (313)
102 3oja_A Leucine-rich immune mol 98.5 1.8E-07 6E-12 102.4 7.9 147 513-662 99-262 (487)
103 1jl5_A Outer protein YOPM; leu 98.5 1.1E-06 3.7E-11 95.2 14.0 148 512-671 90-249 (454)
104 2je0_A Acidic leucine-rich nuc 98.5 3.1E-07 1.1E-11 82.9 8.2 116 512-647 16-149 (149)
105 4g8a_A TOLL-like receptor 4; l 98.5 5.6E-07 1.9E-11 101.8 12.2 124 544-671 45-185 (635)
106 2z7x_B TOLL-like receptor 1, v 98.5 3.9E-07 1.3E-11 100.7 10.6 156 514-671 303-480 (520)
107 1h6t_A Internalin B; cell adhe 98.5 4.8E-07 1.7E-11 91.8 10.1 140 511-673 44-192 (291)
108 3bz5_A Internalin-J, INLJ; leu 98.5 6.5E-07 2.2E-11 97.0 11.7 117 511-632 168-304 (457)
109 2z81_A CD282 antigen, TOLL-lik 98.4 3.8E-07 1.3E-11 101.5 10.1 118 550-670 73-207 (549)
110 1xeu_A Internalin C; cellular 98.4 5.5E-07 1.9E-11 89.9 10.3 139 512-674 18-165 (263)
111 1ziw_A TOLL-like receptor 3; i 98.4 5.4E-07 1.9E-11 103.1 11.6 139 513-655 25-187 (680)
112 3a79_B TLR6, VLRB.59, TOLL-lik 98.4 7.3E-07 2.5E-11 99.6 11.9 119 550-670 376-508 (562)
113 3v47_A TOLL-like receptor 5B a 98.4 8.9E-07 3.1E-11 95.9 12.0 17 513-529 30-46 (455)
114 2z63_A TOLL-like receptor 4, v 98.4 5.7E-07 1.9E-11 100.5 10.5 120 551-674 373-509 (570)
115 1o6v_A Internalin A; bacterial 98.4 1.4E-06 4.8E-11 94.8 13.4 157 511-674 197-368 (466)
116 2z81_A CD282 antigen, TOLL-lik 98.4 7.1E-07 2.4E-11 99.3 11.2 118 550-670 49-183 (549)
117 4ay9_X Follicle-stimulating ho 98.4 5.2E-07 1.8E-11 94.2 9.5 159 512-673 53-237 (350)
118 4b8c_D Glucose-repressible alc 98.4 1.4E-07 4.9E-12 108.2 5.5 100 550-654 223-331 (727)
119 4ecn_A Leucine-rich repeat pro 98.4 7.2E-07 2.5E-11 103.6 10.9 77 595-673 674-767 (876)
120 3t6q_A CD180 antigen; protein- 98.4 1.5E-06 5.3E-11 97.8 13.3 157 511-671 374-559 (606)
121 2z7x_B TOLL-like receptor 1, v 98.4 1.2E-06 4.2E-11 96.7 11.6 95 551-648 21-125 (520)
122 1o6v_A Internalin A; bacterial 98.4 2.1E-06 7.2E-11 93.4 13.1 158 510-674 218-390 (466)
123 3j0a_A TOLL-like receptor 5; m 98.4 1.1E-06 3.7E-11 103.1 11.5 121 512-648 23-158 (844)
124 3v47_A TOLL-like receptor 5B a 98.4 1.2E-06 4E-11 95.0 11.0 120 551-674 275-410 (455)
125 1a9n_A U2A', U2A'; complex (nu 98.4 6.1E-07 2.1E-11 83.6 7.5 101 551-657 19-131 (176)
126 3t6q_A CD180 antigen; protein- 98.4 2.2E-06 7.5E-11 96.6 13.6 162 512-674 300-491 (606)
127 3h4m_A Proteasome-activating n 98.4 1.6E-06 5.3E-11 87.7 11.0 161 156-337 15-202 (285)
128 2ft3_A Biglycan; proteoglycan, 98.4 1.4E-06 4.9E-11 90.1 10.9 52 615-670 173-228 (332)
129 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.8E-05 6.2E-10 78.6 18.6 162 156-338 4-192 (262)
130 4eco_A Uncharacterized protein 98.3 2.3E-06 8E-11 96.8 13.4 78 592-670 511-598 (636)
131 3rgz_A Protein brassinosteroid 98.3 1.6E-06 5.4E-11 100.6 11.9 159 512-672 177-356 (768)
132 3rgz_A Protein brassinosteroid 98.3 9.2E-07 3.2E-11 102.6 9.8 97 551-649 418-525 (768)
133 1hqc_A RUVB; extended AAA-ATPa 98.3 1.2E-05 4E-10 82.8 17.2 176 155-377 9-206 (324)
134 1sxj_D Activator 1 41 kDa subu 98.3 9E-07 3.1E-11 92.4 8.5 193 154-377 33-230 (353)
135 3pvs_A Replication-associated 98.3 6.1E-06 2.1E-10 88.4 14.9 150 154-337 22-179 (447)
136 1sxj_E Activator 1 40 kDa subu 98.3 2.1E-06 7.2E-11 89.7 11.1 192 155-377 11-232 (354)
137 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 2.8E-06 9.6E-11 94.8 12.4 96 550-648 51-156 (562)
138 3j0a_A TOLL-like receptor 5; m 98.3 2.2E-06 7.4E-11 100.6 11.9 123 544-671 18-160 (844)
139 1sxj_A Activator 1 95 kDa subu 98.3 5.8E-06 2E-10 90.8 14.6 193 153-375 34-245 (516)
140 3cvr_A Invasion plasmid antige 98.3 3.9E-06 1.3E-10 92.9 13.2 140 512-661 99-253 (571)
141 1jl5_A Outer protein YOPM; leu 98.3 4E-06 1.4E-10 90.7 12.8 150 513-672 131-290 (454)
142 1sxj_C Activator 1 40 kDa subu 98.3 4.3E-06 1.5E-10 86.7 12.4 182 155-376 22-206 (340)
143 3bos_A Putative DNA replicatio 98.3 9.5E-07 3.3E-11 86.6 6.8 169 157-376 27-211 (242)
144 4b8c_D Glucose-repressible alc 98.3 8.8E-07 3E-11 101.6 7.4 104 568-673 215-330 (727)
145 3d8b_A Fidgetin-like protein 1 98.3 1.1E-05 3.9E-10 84.0 15.2 181 156-377 82-289 (357)
146 3b9p_A CG5977-PA, isoform A; A 98.2 3.1E-05 1E-09 78.6 17.9 186 155-377 18-227 (297)
147 1xwi_A SKD1 protein; VPS4B, AA 98.2 2.5E-05 8.6E-10 80.1 17.0 186 156-377 10-217 (322)
148 3eie_A Vacuolar protein sortin 98.2 1E-05 3.5E-10 83.2 14.0 185 155-376 15-221 (322)
149 2wfh_A SLIT homolog 2 protein 98.2 3.8E-06 1.3E-10 79.4 9.9 104 561-668 17-135 (193)
150 1a9n_A U2A', U2A'; complex (nu 98.2 2.2E-06 7.7E-11 79.6 8.1 102 572-675 14-129 (176)
151 2z4s_A Chromosomal replication 98.2 6.4E-06 2.2E-10 88.4 12.6 158 157-337 104-277 (440)
152 3vfd_A Spastin; ATPase, microt 98.2 1.7E-05 5.7E-10 83.9 15.6 185 155-376 112-319 (389)
153 3pfi_A Holliday junction ATP-d 98.2 1E-05 3.5E-10 83.9 12.3 176 155-376 26-221 (338)
154 4ay9_X Follicle-stimulating ho 98.2 3.5E-06 1.2E-10 87.9 8.8 161 512-674 29-217 (350)
155 2p65_A Hypothetical protein PF 98.2 2.9E-06 9.9E-11 79.4 7.3 50 156-205 20-69 (187)
156 2r9u_A Variable lymphocyte rec 98.2 5.2E-06 1.8E-10 77.0 8.9 96 544-656 26-122 (174)
157 1dce_A Protein (RAB geranylger 98.1 3.9E-06 1.3E-10 93.2 9.1 101 552-658 442-552 (567)
158 3u61_B DNA polymerase accessor 98.1 1.3E-05 4.5E-10 82.5 12.1 150 154-334 22-176 (324)
159 2o6r_A Variable lymphocyte rec 98.1 1.2E-05 4.1E-10 74.7 10.6 96 576-673 27-138 (177)
160 1w8a_A SLIT protein; signaling 98.1 1.2E-05 4E-10 75.9 10.0 111 553-670 10-137 (192)
161 2zan_A Vacuolar protein sortin 98.1 5.2E-05 1.8E-09 81.4 15.9 181 156-377 132-339 (444)
162 1d2n_A N-ethylmaleimide-sensit 98.0 2.9E-05 9.8E-10 77.7 12.6 47 158-204 33-89 (272)
163 3cf0_A Transitional endoplasmi 98.0 9.5E-05 3.2E-09 75.1 16.3 161 156-337 13-200 (301)
164 3syl_A Protein CBBX; photosynt 98.0 5.1E-06 1.7E-10 85.0 6.7 153 159-338 32-219 (309)
165 3pxg_A Negative regulator of g 98.0 2.8E-05 9.6E-10 84.1 12.8 152 155-337 177-339 (468)
166 3g39_A Variable lymphocyte rec 98.0 2.2E-05 7.4E-10 72.5 10.1 88 546-649 25-113 (170)
167 3uk6_A RUVB-like 2; hexameric 98.0 2.7E-05 9.1E-10 81.7 12.1 49 157-205 43-96 (368)
168 2ca6_A RAN GTPase-activating p 98.0 4.1E-06 1.4E-10 88.6 5.5 122 551-675 159-319 (386)
169 1l8q_A Chromosomal replication 98.0 7E-05 2.4E-09 77.0 14.7 147 164-337 20-180 (324)
170 2qp9_X Vacuolar protein sortin 98.0 2.8E-05 9.5E-10 81.0 11.4 181 156-376 49-254 (355)
171 1a5t_A Delta prime, HOLB; zinc 98.0 7.6E-05 2.6E-09 77.0 14.2 167 163-377 7-200 (334)
172 1qvr_A CLPB protein; coiled co 98.0 5.5E-05 1.9E-09 88.3 14.5 167 155-336 167-345 (854)
173 4b4t_J 26S protease regulatory 97.9 0.00011 3.9E-09 76.3 14.8 160 157-337 147-333 (405)
174 3ec2_A DNA replication protein 97.9 1.5E-05 5E-10 74.3 7.4 121 162-305 18-143 (180)
175 2w58_A DNAI, primosome compone 97.9 3.6E-05 1.2E-09 73.1 10.1 120 163-305 34-159 (202)
176 1dce_A Protein (RAB geranylger 97.9 7.7E-06 2.6E-10 90.8 5.7 92 550-645 462-567 (567)
177 4b4t_L 26S protease subunit RP 97.9 0.00021 7.3E-09 75.4 16.3 160 157-337 180-366 (437)
178 2ca6_A RAN GTPase-activating p 97.9 4E-06 1.4E-10 88.7 2.5 95 577-673 159-288 (386)
179 2ifg_A High affinity nerve gro 97.8 3.3E-05 1.1E-09 80.3 8.8 76 573-649 27-114 (347)
180 4b4t_H 26S protease regulatory 97.8 0.00023 7.9E-09 75.0 14.8 159 158-337 209-394 (467)
181 2p1m_B Transport inhibitor res 97.8 2.9E-06 9.8E-11 95.3 0.1 14 512-525 104-117 (594)
182 4b4t_M 26S protease regulatory 97.8 0.00012 4.1E-09 77.3 12.2 161 156-337 179-366 (434)
183 3e4g_A ATP synthase subunit S, 97.8 1.2E-05 4.1E-10 73.7 3.8 86 552-653 62-154 (176)
184 3ogk_B Coronatine-insensitive 97.8 3E-06 1E-10 95.1 -0.2 92 553-645 140-250 (592)
185 4b4t_I 26S protease regulatory 97.8 0.00031 1.1E-08 73.3 14.5 161 156-337 180-367 (437)
186 2gno_A DNA polymerase III, gam 97.7 7.9E-05 2.7E-09 75.5 9.7 146 162-336 1-152 (305)
187 2r9u_A Variable lymphocyte rec 97.7 0.0001 3.5E-09 68.1 9.6 69 550-634 56-124 (174)
188 1ds9_A Outer arm dynein; leuci 97.7 7E-07 2.4E-11 84.9 -5.6 99 550-654 47-155 (198)
189 4b4t_K 26S protease regulatory 97.7 0.0003 1E-08 74.2 13.6 161 156-337 170-358 (428)
190 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00041 1.4E-08 80.0 16.0 159 155-337 183-363 (758)
191 3pxi_A Negative regulator of g 97.7 0.00022 7.4E-09 82.3 12.8 152 155-337 177-339 (758)
192 1lv7_A FTSH; alpha/beta domain 97.6 0.00054 1.8E-08 67.7 13.9 162 155-337 9-196 (257)
193 3n70_A Transport activator; si 97.6 1.5E-05 5.2E-10 71.3 2.3 46 159-204 2-49 (145)
194 1ds9_A Outer arm dynein; leuci 97.6 2.1E-06 7.1E-11 81.6 -4.2 73 550-625 69-151 (198)
195 3goz_A Leucine-rich repeat-con 97.6 4.2E-05 1.4E-09 80.0 5.4 119 551-673 80-239 (362)
196 3hu3_A Transitional endoplasmi 97.5 0.00032 1.1E-08 75.8 11.4 157 157-337 203-386 (489)
197 4fcw_A Chaperone protein CLPB; 97.5 0.00014 4.6E-09 74.3 8.1 105 159-271 18-131 (311)
198 3g39_A Variable lymphocyte rec 97.5 0.00026 8.9E-09 65.1 9.2 60 609-670 49-113 (170)
199 2ce7_A Cell division protein F 97.5 0.0011 3.6E-08 71.2 14.7 161 156-337 14-200 (476)
200 2kjq_A DNAA-related protein; s 97.5 4.4E-05 1.5E-09 68.6 2.9 40 178-219 35-74 (149)
201 2p1m_B Transport inhibitor res 97.5 2.1E-05 7.3E-10 88.1 0.9 99 550-648 129-245 (594)
202 2r62_A Cell division protease 97.3 7.3E-05 2.5E-09 74.5 2.8 49 157-205 10-70 (268)
203 1in4_A RUVB, holliday junction 97.3 0.002 6.7E-08 66.3 13.1 52 154-205 21-77 (334)
204 3sb4_A Hypothetical leucine ri 97.3 0.00034 1.2E-08 71.9 7.2 93 593-690 225-327 (329)
205 3goz_A Leucine-rich repeat-con 97.2 0.00011 3.9E-09 76.7 2.9 116 551-670 109-264 (362)
206 2x8a_A Nuclear valosin-contain 97.2 0.0063 2.2E-07 60.5 14.7 160 157-337 9-192 (274)
207 3hr8_A Protein RECA; alpha and 97.1 0.0021 7.1E-08 66.1 11.1 87 179-272 61-152 (356)
208 2ifg_A High affinity nerve gro 97.1 0.00077 2.6E-08 69.8 8.0 77 590-668 27-112 (347)
209 2ra8_A Uncharacterized protein 97.1 0.0004 1.4E-08 72.2 5.7 56 593-649 251-318 (362)
210 3ogk_B Coronatine-insensitive 97.1 4.7E-05 1.6E-09 85.3 -1.7 114 550-667 111-251 (592)
211 3e4g_A ATP synthase subunit S, 97.1 0.00017 5.7E-09 66.1 2.3 85 577-675 61-155 (176)
212 3m6a_A ATP-dependent protease 97.1 0.0025 8.7E-08 70.0 12.1 165 158-337 81-267 (543)
213 3cf2_A TER ATPase, transitiona 97.1 0.0019 6.4E-08 73.5 11.0 159 158-337 204-386 (806)
214 1z7x_W Ribonuclease inhibitor; 97.0 0.00022 7.5E-09 77.0 3.1 144 513-671 3-182 (461)
215 1ixz_A ATP-dependent metallopr 97.0 0.0044 1.5E-07 60.9 11.9 159 157-336 15-199 (254)
216 2qgz_A Helicase loader, putati 97.0 0.00068 2.3E-08 68.8 6.1 55 162-218 132-190 (308)
217 3io5_A Recombination and repai 97.0 0.0037 1.3E-07 62.4 11.0 87 180-271 29-123 (333)
218 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.0018 6.2E-08 62.5 8.8 119 179-306 23-169 (235)
219 1z7x_W Ribonuclease inhibitor; 96.9 0.00018 6.1E-09 77.8 1.2 118 550-671 283-439 (461)
220 2cvh_A DNA repair and recombin 96.9 0.0035 1.2E-07 59.9 10.0 87 178-271 19-117 (220)
221 2zr9_A Protein RECA, recombina 96.9 0.0037 1.3E-07 64.4 10.6 87 178-271 60-151 (349)
222 1n0w_A DNA repair protein RAD5 96.9 0.0054 1.8E-07 59.6 11.3 93 178-271 23-131 (243)
223 3pxi_A Negative regulator of g 96.9 0.0029 9.9E-08 72.8 10.7 156 158-337 491-676 (758)
224 3co5_A Putative two-component 96.9 0.00048 1.6E-08 61.2 3.1 46 158-203 4-51 (143)
225 1iy2_A ATP-dependent metallopr 96.8 0.0068 2.3E-07 60.4 11.7 160 156-336 38-223 (278)
226 3un9_A NLR family member X1; l 96.8 0.0001 3.5E-09 77.2 -1.9 99 550-649 125-250 (372)
227 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0011 3.6E-08 66.6 5.5 70 179-271 123-194 (331)
228 2ra8_A Uncharacterized protein 96.8 0.0019 6.6E-08 67.0 7.2 115 550-670 171-318 (362)
229 1xp8_A RECA protein, recombina 96.7 0.0066 2.3E-07 62.8 10.9 87 178-271 73-164 (366)
230 3un9_A NLR family member X1; l 96.7 0.00048 1.6E-08 72.1 1.9 51 573-623 179-248 (372)
231 1v5w_A DMC1, meiotic recombina 96.7 0.0097 3.3E-07 61.3 11.7 93 178-271 121-231 (343)
232 1u94_A RECA protein, recombina 96.7 0.0066 2.3E-07 62.6 10.3 87 178-271 62-153 (356)
233 3t15_A Ribulose bisphosphate c 96.6 0.0017 5.9E-08 65.4 5.4 28 178-205 35-62 (293)
234 2dhr_A FTSH; AAA+ protein, hex 96.6 0.028 9.7E-07 60.5 15.2 157 156-336 29-214 (499)
235 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0036 1.2E-07 72.1 8.7 103 158-271 458-569 (758)
236 2z43_A DNA repair and recombin 96.6 0.0091 3.1E-07 60.9 10.8 93 178-271 106-215 (324)
237 2i1q_A DNA repair and recombin 96.5 0.01 3.4E-07 60.6 10.6 92 178-270 97-215 (322)
238 3kl4_A SRP54, signal recogniti 96.5 0.071 2.4E-06 56.1 17.2 90 178-269 96-189 (433)
239 1ypw_A Transitional endoplasmi 96.5 0.0041 1.4E-07 71.7 8.1 159 156-337 202-386 (806)
240 3dm5_A SRP54, signal recogniti 96.4 0.19 6.4E-06 53.0 19.4 90 178-269 99-192 (443)
241 4a74_A DNA repair and recombin 96.4 0.013 4.5E-07 56.2 9.9 93 178-271 24-137 (231)
242 1rz3_A Hypothetical protein rb 96.3 0.0049 1.7E-07 58.2 6.1 44 162-205 2-48 (201)
243 2px0_A Flagellar biosynthesis 96.3 0.017 5.9E-07 57.9 10.5 86 178-267 104-190 (296)
244 3lda_A DNA repair protein RAD5 96.2 0.014 4.8E-07 61.1 9.5 93 178-271 177-285 (400)
245 2c9o_A RUVB-like 1; hexameric 96.2 0.0087 3E-07 64.3 8.1 48 158-205 37-89 (456)
246 3sb4_A Hypothetical leucine ri 96.2 0.011 3.8E-07 60.4 8.5 86 576-665 225-324 (329)
247 1j8m_F SRP54, signal recogniti 96.0 0.48 1.6E-05 47.3 19.6 89 179-269 98-190 (297)
248 1io0_A Tropomodulin; LRR prote 96.0 0.0029 1E-07 58.8 2.9 97 551-648 36-161 (185)
249 3c8u_A Fructokinase; YP_612366 96.0 0.0068 2.3E-07 57.5 5.5 42 164-205 5-48 (208)
250 2dr3_A UPF0273 protein PH0284; 96.0 0.036 1.2E-06 53.7 11.0 88 179-271 23-140 (247)
251 1qvr_A CLPB protein; coiled co 96.0 0.0061 2.1E-07 71.0 6.2 60 159-220 559-627 (854)
252 2ehv_A Hypothetical protein PH 96.0 0.014 4.8E-07 56.9 7.8 39 178-218 29-68 (251)
253 1ofh_A ATP-dependent HSL prote 96.0 0.0063 2.2E-07 61.5 5.4 47 158-204 15-75 (310)
254 3jvv_A Twitching mobility prot 95.9 0.0023 7.8E-08 66.1 1.9 113 176-308 120-234 (356)
255 1pzn_A RAD51, DNA repair and r 95.9 0.028 9.7E-07 57.8 9.8 93 178-271 130-243 (349)
256 3cmu_A Protein RECA, recombina 95.7 0.029 9.9E-07 69.6 10.4 86 178-270 1426-1516(2050)
257 3bh0_A DNAB-like replicative h 95.6 0.077 2.6E-06 53.7 11.9 52 178-233 67-118 (315)
258 2bjv_A PSP operon transcriptio 95.6 0.011 3.8E-07 58.4 5.3 61 158-220 6-68 (265)
259 1vma_A Cell division protein F 95.5 0.045 1.5E-06 55.0 9.4 88 178-269 103-196 (306)
260 2xxa_A Signal recognition part 95.4 0.16 5.3E-06 53.8 13.5 90 178-268 99-192 (433)
261 1qhx_A CPT, protein (chloramph 95.3 0.0098 3.3E-07 54.6 3.7 25 180-204 4-28 (178)
262 3kb2_A SPBC2 prophage-derived 95.3 0.0095 3.3E-07 54.3 3.6 25 180-204 2-26 (173)
263 1g8p_A Magnesium-chelatase 38 95.3 0.0092 3.1E-07 61.6 3.9 50 155-204 21-70 (350)
264 4eun_A Thermoresistant glucoki 95.3 0.011 3.8E-07 55.6 4.0 27 177-203 27-53 (200)
265 1zp6_A Hypothetical protein AT 95.3 0.011 3.7E-07 55.0 3.9 25 178-202 8-32 (191)
266 3uie_A Adenylyl-sulfate kinase 95.3 0.013 4.4E-07 55.1 4.5 29 176-204 22-50 (200)
267 3ice_A Transcription terminati 95.3 0.02 6.8E-07 58.7 6.0 99 169-271 163-273 (422)
268 3vaa_A Shikimate kinase, SK; s 95.3 0.011 3.9E-07 55.5 4.0 27 178-204 24-50 (199)
269 1kgd_A CASK, peripheral plasma 95.3 0.01 3.5E-07 54.8 3.6 26 179-204 5-30 (180)
270 3lw7_A Adenylate kinase relate 95.3 0.0099 3.4E-07 54.3 3.5 20 180-199 2-21 (179)
271 1ls1_A Signal recognition part 95.3 0.074 2.5E-06 53.2 10.2 88 178-268 97-189 (295)
272 2hf9_A Probable hydrogenase ni 95.2 0.023 7.8E-07 54.4 6.1 42 164-205 23-64 (226)
273 3e70_C DPA, signal recognition 95.2 0.17 5.9E-06 51.3 12.8 58 177-236 127-185 (328)
274 2ck3_D ATP synthase subunit be 95.1 0.12 4E-06 54.6 11.5 101 170-271 143-265 (482)
275 1kag_A SKI, shikimate kinase I 95.1 0.01 3.5E-07 54.2 3.1 25 180-204 5-29 (173)
276 4a1f_A DNAB helicase, replicat 95.1 0.1 3.5E-06 53.1 10.7 52 178-233 45-96 (338)
277 1ly1_A Polynucleotide kinase; 95.1 0.013 4.3E-07 53.9 3.7 22 180-201 3-24 (181)
278 1odf_A YGR205W, hypothetical 3 95.1 0.025 8.5E-07 56.5 6.0 55 177-231 29-84 (290)
279 2b8t_A Thymidine kinase; deoxy 95.0 0.0099 3.4E-07 56.8 2.7 113 178-306 11-127 (223)
280 2r44_A Uncharacterized protein 95.0 0.015 5.1E-07 59.5 4.3 45 158-204 27-71 (331)
281 3tr0_A Guanylate kinase, GMP k 95.0 0.014 4.8E-07 54.9 3.7 25 179-203 7-31 (205)
282 2wsm_A Hydrogenase expression/ 95.0 0.023 7.8E-07 54.2 5.2 43 162-204 13-55 (221)
283 1sky_E F1-ATPase, F1-ATP synth 95.0 0.031 1.1E-06 59.1 6.5 92 179-271 151-257 (473)
284 3trf_A Shikimate kinase, SK; a 94.9 0.015 5E-07 53.8 3.6 26 179-204 5-30 (185)
285 2ga8_A Hypothetical 39.9 kDa p 94.9 0.035 1.2E-06 56.6 6.5 45 161-205 2-50 (359)
286 1nks_A Adenylate kinase; therm 94.9 0.017 5.9E-07 53.6 4.0 26 180-205 2-27 (194)
287 3asz_A Uridine kinase; cytidin 94.9 0.017 5.7E-07 54.7 3.9 27 178-204 5-31 (211)
288 1knq_A Gluconate kinase; ALFA/ 94.9 0.018 6.1E-07 52.7 4.0 25 179-203 8-32 (175)
289 3a00_A Guanylate kinase, GMP k 94.9 0.012 4.3E-07 54.5 2.9 25 180-204 2-26 (186)
290 3tau_A Guanylate kinase, GMP k 94.9 0.017 5.8E-07 54.7 3.9 28 177-204 6-33 (208)
291 1xjc_A MOBB protein homolog; s 94.9 0.02 6.7E-07 52.0 4.1 29 178-206 3-31 (169)
292 3t61_A Gluconokinase; PSI-biol 94.8 0.013 4.6E-07 55.1 3.1 25 179-203 18-42 (202)
293 3tqc_A Pantothenate kinase; bi 94.8 0.13 4.5E-06 51.9 10.6 44 161-204 70-117 (321)
294 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.017 5.8E-07 62.3 4.3 44 159-204 23-66 (500)
295 2rhm_A Putative kinase; P-loop 94.8 0.019 6.6E-07 53.3 4.2 25 179-203 5-29 (193)
296 1ye8_A Protein THEP1, hypothet 94.8 0.018 6.3E-07 52.9 3.9 25 181-205 2-26 (178)
297 1ojl_A Transcriptional regulat 94.8 0.02 7E-07 57.7 4.5 46 159-204 3-50 (304)
298 2qor_A Guanylate kinase; phosp 94.8 0.015 5.2E-07 54.8 3.3 26 178-203 11-36 (204)
299 2bdt_A BH3686; alpha-beta prot 94.7 0.018 6E-07 53.5 3.6 22 180-201 3-24 (189)
300 1kht_A Adenylate kinase; phosp 94.7 0.019 6.6E-07 53.2 3.8 26 180-205 4-29 (192)
301 2j41_A Guanylate kinase; GMP, 94.7 0.019 6.4E-07 54.1 3.8 25 179-203 6-30 (207)
302 2ze6_A Isopentenyl transferase 94.7 0.019 6.4E-07 56.3 3.8 25 180-204 2-26 (253)
303 3iij_A Coilin-interacting nucl 94.7 0.017 5.7E-07 53.2 3.3 26 179-204 11-36 (180)
304 1gvn_B Zeta; postsegregational 94.7 0.034 1.2E-06 55.5 5.7 39 165-203 14-57 (287)
305 1io0_A Tropomodulin; LRR prote 94.6 0.03 1E-06 51.8 4.9 100 570-671 29-163 (185)
306 1jr3_D DNA polymerase III, del 94.6 0.27 9.4E-06 50.2 12.7 160 172-377 11-180 (343)
307 1zuh_A Shikimate kinase; alpha 94.6 0.021 7.2E-07 51.8 3.8 27 178-204 6-32 (168)
308 1lvg_A Guanylate kinase, GMP k 94.6 0.016 5.4E-07 54.4 2.9 26 179-204 4-29 (198)
309 2bbw_A Adenylate kinase 4, AK4 94.6 0.022 7.5E-07 55.5 4.0 27 178-204 26-52 (246)
310 2c95_A Adenylate kinase 1; tra 94.6 0.024 8E-07 52.9 4.1 27 178-204 8-34 (196)
311 3hws_A ATP-dependent CLP prote 94.6 0.031 1.1E-06 58.0 5.4 45 160-204 17-76 (363)
312 1fx0_B ATP synthase beta chain 94.5 0.11 3.8E-06 55.0 9.5 93 178-271 164-278 (498)
313 1uf9_A TT1252 protein; P-loop, 94.5 0.024 8.2E-07 53.1 4.1 26 177-202 6-31 (203)
314 1y63_A LMAJ004144AAA protein; 94.5 0.023 8E-07 52.5 3.9 25 178-202 9-33 (184)
315 2jaq_A Deoxyguanosine kinase; 94.5 0.021 7.3E-07 53.6 3.6 24 181-204 2-25 (205)
316 1tev_A UMP-CMP kinase; ploop, 94.5 0.023 7.8E-07 52.8 3.8 25 179-203 3-27 (196)
317 1via_A Shikimate kinase; struc 94.5 0.019 6.5E-07 52.5 3.2 25 180-204 5-29 (175)
318 2if2_A Dephospho-COA kinase; a 94.5 0.021 7.2E-07 53.7 3.6 22 180-201 2-23 (204)
319 1htw_A HI0065; nucleotide-bind 94.5 0.025 8.7E-07 50.8 3.9 27 177-203 31-57 (158)
320 3ney_A 55 kDa erythrocyte memb 94.5 0.024 8.3E-07 52.8 3.8 27 178-204 18-44 (197)
321 3rw6_A Nuclear RNA export fact 94.4 0.032 1.1E-06 54.8 4.8 9 615-623 221-229 (267)
322 4gp7_A Metallophosphoesterase; 94.4 0.02 6.7E-07 52.3 3.1 22 178-199 8-29 (171)
323 2f1r_A Molybdopterin-guanine d 94.4 0.019 6.6E-07 52.3 3.0 36 180-215 3-38 (171)
324 1uj2_A Uridine-cytidine kinase 94.4 0.025 8.5E-07 55.3 4.0 28 177-204 20-47 (252)
325 3cmw_A Protein RECA, recombina 94.4 0.1 3.4E-06 64.0 9.9 87 178-271 382-473 (1706)
326 1cke_A CK, MSSA, protein (cyti 94.4 0.023 7.9E-07 54.4 3.7 24 180-203 6-29 (227)
327 1znw_A Guanylate kinase, GMP k 94.4 0.022 7.6E-07 53.8 3.5 27 178-204 19-45 (207)
328 3cmw_A Protein RECA, recombina 94.4 0.098 3.4E-06 64.1 9.8 86 179-271 1431-1521(1706)
329 2j37_W Signal recognition part 94.4 0.37 1.3E-05 51.8 13.4 90 178-269 100-193 (504)
330 1um8_A ATP-dependent CLP prote 94.4 0.039 1.3E-06 57.5 5.7 46 159-204 22-97 (376)
331 2yvu_A Probable adenylyl-sulfa 94.4 0.029 9.8E-07 51.9 4.1 29 178-206 12-40 (186)
332 1ex7_A Guanylate kinase; subst 94.4 0.02 7E-07 52.9 3.1 24 180-203 2-25 (186)
333 2ffh_A Protein (FFH); SRP54, s 94.4 0.23 8E-06 52.1 11.5 88 178-268 97-189 (425)
334 1ukz_A Uridylate kinase; trans 94.4 0.029 9.8E-07 52.7 4.2 26 178-203 14-39 (203)
335 2qt1_A Nicotinamide riboside k 94.3 0.024 8.1E-07 53.5 3.6 25 178-202 20-44 (207)
336 2bwj_A Adenylate kinase 5; pho 94.3 0.028 9.5E-07 52.5 4.0 26 179-204 12-37 (199)
337 2plr_A DTMP kinase, probable t 94.3 0.029 9.9E-07 53.0 4.1 27 179-205 4-30 (213)
338 1rj9_A FTSY, signal recognitio 94.3 0.031 1.1E-06 56.2 4.5 29 178-206 101-129 (304)
339 3aez_A Pantothenate kinase; tr 94.3 0.026 9.1E-07 57.0 4.0 42 177-218 88-129 (312)
340 3cm0_A Adenylate kinase; ATP-b 94.3 0.028 9.6E-07 51.9 3.9 26 179-204 4-29 (186)
341 3cmu_A Protein RECA, recombina 94.3 0.11 3.9E-06 64.3 10.2 87 178-271 382-473 (2050)
342 2iyv_A Shikimate kinase, SK; t 94.3 0.021 7.2E-07 52.7 3.0 25 180-204 3-27 (184)
343 2jeo_A Uridine-cytidine kinase 94.2 0.029 9.8E-07 54.6 4.0 27 177-203 23-49 (245)
344 2vli_A Antibiotic resistance p 94.2 0.021 7.1E-07 52.6 2.8 26 179-204 5-30 (183)
345 3a4m_A L-seryl-tRNA(SEC) kinas 94.2 0.029 1E-06 55.1 4.0 26 179-204 4-29 (260)
346 3umf_A Adenylate kinase; rossm 94.2 0.033 1.1E-06 52.9 4.1 27 178-204 28-54 (217)
347 2r6a_A DNAB helicase, replicat 94.1 0.13 4.5E-06 55.0 9.3 51 178-231 202-252 (454)
348 1z6g_A Guanylate kinase; struc 94.1 0.024 8.3E-07 54.1 3.2 26 178-203 22-47 (218)
349 2p5t_B PEZT; postsegregational 94.1 0.039 1.3E-06 53.9 4.7 27 178-204 31-57 (253)
350 1qf9_A UMP/CMP kinase, protein 94.1 0.033 1.1E-06 51.7 3.9 26 179-204 6-31 (194)
351 1e6c_A Shikimate kinase; phosp 94.1 0.026 8.9E-07 51.4 3.2 25 180-204 3-27 (173)
352 3tlx_A Adenylate kinase 2; str 94.1 0.066 2.3E-06 51.9 6.2 41 163-203 11-53 (243)
353 2wwf_A Thymidilate kinase, put 94.1 0.035 1.2E-06 52.4 4.2 32 179-211 10-41 (212)
354 4fdw_A Leucine rich hypothetic 94.1 0.17 5.8E-06 53.1 9.8 96 552-655 249-361 (401)
355 1jjv_A Dephospho-COA kinase; P 94.1 0.027 9.2E-07 53.1 3.3 22 180-201 3-24 (206)
356 1nn5_A Similar to deoxythymidy 94.0 0.036 1.2E-06 52.4 4.2 28 178-205 8-35 (215)
357 1s96_A Guanylate kinase, GMP k 94.0 0.032 1.1E-06 53.2 3.7 27 178-204 15-41 (219)
358 2cdn_A Adenylate kinase; phosp 94.0 0.038 1.3E-06 51.8 4.2 26 179-204 20-45 (201)
359 2grj_A Dephospho-COA kinase; T 94.0 0.032 1.1E-06 52.0 3.6 26 178-203 11-36 (192)
360 4e22_A Cytidylate kinase; P-lo 93.9 0.036 1.2E-06 54.2 4.0 27 178-204 26-52 (252)
361 1aky_A Adenylate kinase; ATP:A 93.9 0.036 1.2E-06 52.9 3.9 27 178-204 3-29 (220)
362 2pt5_A Shikimate kinase, SK; a 93.9 0.035 1.2E-06 50.2 3.7 24 181-204 2-25 (168)
363 3fwy_A Light-independent proto 93.9 0.078 2.7E-06 53.5 6.6 41 177-219 46-86 (314)
364 2i3b_A HCR-ntpase, human cance 93.9 0.03 1E-06 52.0 3.2 25 180-204 2-26 (189)
365 2pbr_A DTMP kinase, thymidylat 93.9 0.036 1.2E-06 51.5 3.7 24 181-204 2-25 (195)
366 2q6t_A DNAB replication FORK h 93.9 0.31 1.1E-05 51.8 11.5 53 178-233 199-251 (444)
367 3b9q_A Chloroplast SRP recepto 93.8 0.043 1.5E-06 55.1 4.4 29 178-206 99-127 (302)
368 1zd8_A GTP:AMP phosphotransfer 93.8 0.038 1.3E-06 53.0 3.8 25 179-203 7-31 (227)
369 2eyu_A Twitching motility prot 93.8 0.084 2.9E-06 51.8 6.4 110 177-307 23-135 (261)
370 2onk_A Molybdate/tungstate ABC 93.8 0.035 1.2E-06 53.8 3.5 27 177-204 23-49 (240)
371 1gtv_A TMK, thymidylate kinase 93.8 0.022 7.6E-07 53.9 2.1 25 181-205 2-26 (214)
372 2z0h_A DTMP kinase, thymidylat 93.7 0.1 3.4E-06 48.5 6.6 25 181-205 2-26 (197)
373 1g5t_A COB(I)alamin adenosyltr 93.7 0.018 6.3E-07 53.3 1.3 120 179-307 28-165 (196)
374 3rw6_A Nuclear RNA export fact 93.7 0.059 2E-06 52.9 4.9 44 610-655 192-237 (267)
375 1sq5_A Pantothenate kinase; P- 93.7 0.078 2.7E-06 53.5 6.0 28 177-204 78-105 (308)
376 1np6_A Molybdopterin-guanine d 93.6 0.074 2.5E-06 48.5 5.2 27 179-205 6-32 (174)
377 1cr0_A DNA primase/helicase; R 93.6 0.12 4.2E-06 51.6 7.4 52 178-232 34-85 (296)
378 3fb4_A Adenylate kinase; psych 93.6 0.042 1.4E-06 52.1 3.7 24 181-204 2-25 (216)
379 3bgw_A DNAB-like replicative h 93.6 0.29 1E-05 52.0 10.6 50 178-231 196-245 (444)
380 1zak_A Adenylate kinase; ATP:A 93.6 0.041 1.4E-06 52.5 3.6 27 178-204 4-30 (222)
381 2pcj_A ABC transporter, lipopr 93.6 0.033 1.1E-06 53.4 2.9 27 178-204 29-55 (224)
382 3end_A Light-independent proto 93.5 0.097 3.3E-06 52.7 6.6 44 176-221 38-81 (307)
383 3tif_A Uncharacterized ABC tra 93.5 0.037 1.2E-06 53.5 3.2 27 178-204 30-56 (235)
384 2pez_A Bifunctional 3'-phospho 93.5 0.047 1.6E-06 50.1 3.8 28 178-205 4-31 (179)
385 2v54_A DTMP kinase, thymidylat 93.5 0.043 1.5E-06 51.5 3.6 25 179-203 4-28 (204)
386 2yhs_A FTSY, cell division pro 93.5 0.097 3.3E-06 55.8 6.5 42 178-222 292-333 (503)
387 2zts_A Putative uncharacterize 93.5 0.28 9.5E-06 47.3 9.5 48 179-229 30-77 (251)
388 1zu4_A FTSY; GTPase, signal re 93.4 0.14 4.9E-06 51.7 7.6 39 178-218 104-142 (320)
389 1g41_A Heat shock protein HSLU 93.4 0.058 2E-06 56.9 4.7 48 158-205 15-76 (444)
390 1m7g_A Adenylylsulfate kinase; 93.4 0.056 1.9E-06 51.2 4.2 28 177-204 23-50 (211)
391 3b85_A Phosphate starvation-in 93.4 0.034 1.2E-06 52.5 2.6 24 179-202 22-45 (208)
392 3dl0_A Adenylate kinase; phosp 93.4 0.046 1.6E-06 51.8 3.6 23 181-203 2-24 (216)
393 3lnc_A Guanylate kinase, GMP k 93.4 0.031 1.1E-06 53.8 2.4 25 179-203 27-52 (231)
394 1q57_A DNA primase/helicase; d 93.3 0.37 1.3E-05 52.2 11.2 52 178-232 241-292 (503)
395 2og2_A Putative signal recogni 93.3 0.075 2.6E-06 54.6 5.2 29 178-206 156-184 (359)
396 3k1j_A LON protease, ATP-depen 93.3 0.042 1.4E-06 61.2 3.6 49 155-205 38-86 (604)
397 1vht_A Dephospho-COA kinase; s 93.2 0.054 1.8E-06 51.5 3.8 23 179-201 4-26 (218)
398 3nwj_A ATSK2; P loop, shikimat 93.2 0.045 1.5E-06 53.3 3.2 26 179-204 48-73 (250)
399 2cbz_A Multidrug resistance-as 93.2 0.045 1.5E-06 52.9 3.2 27 178-204 30-56 (237)
400 1tue_A Replication protein E1; 93.1 0.094 3.2E-06 48.8 5.1 41 164-204 42-83 (212)
401 1b0u_A Histidine permease; ABC 93.1 0.045 1.5E-06 53.8 3.2 27 178-204 31-57 (262)
402 2d2e_A SUFC protein; ABC-ATPas 93.1 0.049 1.7E-06 53.1 3.3 25 178-202 28-52 (250)
403 3gfo_A Cobalt import ATP-bindi 93.1 0.041 1.4E-06 54.4 2.8 27 178-204 33-59 (275)
404 3p32_A Probable GTPase RV1496/ 93.1 0.13 4.4E-06 53.1 6.7 39 167-205 65-105 (355)
405 2f6r_A COA synthase, bifunctio 93.0 0.058 2E-06 53.6 3.9 24 178-201 74-97 (281)
406 3r20_A Cytidylate kinase; stru 93.0 0.061 2.1E-06 51.6 3.8 26 179-204 9-34 (233)
407 3ake_A Cytidylate kinase; CMP 93.0 0.061 2.1E-06 50.5 3.8 24 181-204 4-27 (208)
408 1ji0_A ABC transporter; ATP bi 93.0 0.044 1.5E-06 53.1 2.8 27 178-204 31-57 (240)
409 2olj_A Amino acid ABC transpor 93.0 0.05 1.7E-06 53.4 3.2 27 178-204 49-75 (263)
410 1sgw_A Putative ABC transporte 93.0 0.038 1.3E-06 52.5 2.2 27 178-204 34-60 (214)
411 1g6h_A High-affinity branched- 92.9 0.044 1.5E-06 53.7 2.8 27 178-204 32-58 (257)
412 2zu0_C Probable ATP-dependent 92.9 0.059 2E-06 53.1 3.7 25 178-202 45-69 (267)
413 3d3q_A TRNA delta(2)-isopenten 92.9 0.059 2E-06 54.7 3.7 25 180-204 8-32 (340)
414 4g1u_C Hemin import ATP-bindin 92.9 0.045 1.5E-06 53.9 2.8 27 178-204 36-62 (266)
415 2pze_A Cystic fibrosis transme 92.9 0.046 1.6E-06 52.5 2.8 27 178-204 33-59 (229)
416 1mv5_A LMRA, multidrug resista 92.8 0.056 1.9E-06 52.5 3.3 27 178-204 27-53 (243)
417 1vpl_A ABC transporter, ATP-bi 92.8 0.054 1.9E-06 52.9 3.2 27 178-204 40-66 (256)
418 3upu_A ATP-dependent DNA helic 92.8 0.22 7.5E-06 53.3 8.3 44 162-206 29-72 (459)
419 2ff7_A Alpha-hemolysin translo 92.8 0.049 1.7E-06 53.0 2.8 27 178-204 34-60 (247)
420 1e4v_A Adenylate kinase; trans 92.7 0.071 2.4E-06 50.5 3.8 23 181-203 2-24 (214)
421 3be4_A Adenylate kinase; malar 92.7 0.071 2.4E-06 50.7 3.8 26 179-204 5-30 (217)
422 2ghi_A Transport protein; mult 92.6 0.059 2E-06 52.8 3.2 26 178-203 45-70 (260)
423 2xb4_A Adenylate kinase; ATP-b 92.6 0.072 2.5E-06 50.9 3.7 23 181-203 2-24 (223)
424 2qi9_C Vitamin B12 import ATP- 92.6 0.053 1.8E-06 52.8 2.8 27 178-204 25-51 (249)
425 3sr0_A Adenylate kinase; phosp 92.6 0.075 2.6E-06 50.0 3.7 24 181-204 2-25 (206)
426 1ak2_A Adenylate kinase isoenz 92.6 0.081 2.8E-06 50.9 4.0 26 179-204 16-41 (233)
427 3crm_A TRNA delta(2)-isopenten 92.6 0.072 2.5E-06 53.7 3.7 24 180-203 6-29 (323)
428 3exa_A TRNA delta(2)-isopenten 92.5 0.072 2.5E-06 53.2 3.7 25 179-203 3-27 (322)
429 2ixe_A Antigen peptide transpo 92.5 0.061 2.1E-06 53.1 3.2 27 178-204 44-70 (271)
430 1oix_A RAS-related protein RAB 92.5 0.072 2.5E-06 49.4 3.6 26 179-204 29-54 (191)
431 2yz2_A Putative ABC transporte 92.5 0.062 2.1E-06 52.9 3.2 27 178-204 32-58 (266)
432 2ihy_A ABC transporter, ATP-bi 92.5 0.056 1.9E-06 53.6 2.8 27 178-204 46-72 (279)
433 3vr4_D V-type sodium ATPase su 92.5 0.11 3.6E-06 54.7 4.9 93 179-271 151-260 (465)
434 2nq2_C Hypothetical ABC transp 92.4 0.056 1.9E-06 52.8 2.7 27 178-204 30-56 (253)
435 1a7j_A Phosphoribulokinase; tr 92.4 0.049 1.7E-06 54.4 2.3 27 178-204 4-30 (290)
436 2v9p_A Replication protein E1; 92.4 0.078 2.7E-06 53.1 3.7 27 177-203 124-150 (305)
437 3cf2_A TER ATPase, transitiona 92.4 0.095 3.2E-06 59.6 4.8 159 157-336 476-661 (806)
438 3a8t_A Adenylate isopentenyltr 92.2 0.069 2.4E-06 54.0 3.2 26 178-203 39-64 (339)
439 3sop_A Neuronal-specific septi 92.2 0.078 2.7E-06 52.3 3.5 24 181-204 4-27 (270)
440 3foz_A TRNA delta(2)-isopenten 92.2 0.089 3E-06 52.4 3.8 26 178-203 9-34 (316)
441 1yrb_A ATP(GTP)binding protein 92.1 0.11 3.8E-06 50.8 4.4 27 178-204 13-39 (262)
442 4eaq_A DTMP kinase, thymidylat 92.0 0.17 5.7E-06 48.6 5.5 28 178-205 25-52 (229)
443 3cr8_A Sulfate adenylyltranfer 92.0 0.15 5.2E-06 55.6 5.8 46 160-205 348-395 (552)
444 2f9l_A RAB11B, member RAS onco 92.0 0.08 2.8E-06 49.4 3.2 24 180-203 6-29 (199)
445 1g8f_A Sulfate adenylyltransfe 92.0 0.16 5.3E-06 54.8 5.7 48 158-205 372-421 (511)
446 2pjz_A Hypothetical protein ST 91.9 0.073 2.5E-06 52.2 2.7 25 179-203 30-54 (263)
447 3kta_A Chromosome segregation 91.8 0.1 3.5E-06 47.9 3.6 24 180-203 27-50 (182)
448 1ltq_A Polynucleotide kinase; 91.8 0.096 3.3E-06 52.5 3.7 23 180-202 3-25 (301)
449 1q3t_A Cytidylate kinase; nucl 91.7 0.12 4.2E-06 49.7 4.2 27 178-204 15-41 (236)
450 3lv8_A DTMP kinase, thymidylat 91.7 0.32 1.1E-05 46.7 7.0 35 179-214 27-61 (236)
451 2wji_A Ferrous iron transport 91.7 0.099 3.4E-06 47.0 3.3 23 180-202 4-26 (165)
452 2bbs_A Cystic fibrosis transme 91.6 0.092 3.2E-06 52.3 3.3 27 178-204 63-89 (290)
453 1nlf_A Regulatory protein REPA 91.6 0.096 3.3E-06 52.0 3.4 43 178-220 29-79 (279)
454 4f4c_A Multidrug resistance pr 91.6 0.33 1.1E-05 59.1 8.6 28 178-205 443-470 (1321)
455 2dyk_A GTP-binding protein; GT 91.5 0.12 4.1E-06 45.9 3.7 24 180-203 2-25 (161)
456 2ocp_A DGK, deoxyguanosine kin 91.5 0.13 4.3E-06 49.8 4.1 26 179-204 2-27 (241)
457 3io3_A DEHA2D07832P; chaperone 91.5 0.25 8.5E-06 50.6 6.4 46 176-223 15-62 (348)
458 3hjn_A DTMP kinase, thymidylat 91.5 0.38 1.3E-05 44.8 7.2 26 181-206 2-27 (197)
459 1tq4_A IIGP1, interferon-induc 91.5 0.15 5.3E-06 53.3 4.9 25 178-202 68-92 (413)
460 1cp2_A CP2, nitrogenase iron p 91.5 0.24 8.2E-06 48.6 6.2 39 180-220 2-40 (269)
461 2afh_E Nitrogenase iron protei 91.5 0.25 8.5E-06 49.1 6.3 40 179-220 2-41 (289)
462 3fvq_A Fe(3+) IONS import ATP- 91.4 0.1 3.5E-06 53.5 3.4 27 178-204 29-55 (359)
463 2vp4_A Deoxynucleoside kinase; 91.4 0.071 2.4E-06 51.2 2.1 25 178-202 19-43 (230)
464 3ux8_A Excinuclease ABC, A sub 91.4 0.29 9.9E-06 55.2 7.4 63 250-320 212-276 (670)
465 4tmk_A Protein (thymidylate ki 91.4 0.36 1.2E-05 45.5 7.0 27 180-206 4-30 (213)
466 2zej_A Dardarin, leucine-rich 91.3 0.084 2.9E-06 48.5 2.5 22 181-202 4-25 (184)
467 1nij_A Hypothetical protein YJ 91.3 0.1 3.5E-06 52.9 3.3 26 178-203 3-28 (318)
468 1tf7_A KAIC; homohexamer, hexa 91.3 0.24 8.1E-06 54.1 6.4 83 180-268 40-147 (525)
469 1svm_A Large T antigen; AAA+ f 91.3 0.12 4.2E-06 53.4 3.8 27 177-203 167-193 (377)
470 3tui_C Methionine import ATP-b 91.3 0.12 4.1E-06 53.1 3.7 27 178-204 53-79 (366)
471 2r8r_A Sensor protein; KDPD, P 91.2 0.28 9.7E-06 46.4 6.0 38 181-220 8-45 (228)
472 1p9r_A General secretion pathw 91.2 0.26 9E-06 51.7 6.4 30 176-205 164-193 (418)
473 2v3c_C SRP54, signal recogniti 91.2 0.098 3.4E-06 55.3 3.1 38 179-218 99-136 (432)
474 3iqw_A Tail-anchored protein t 91.1 0.3 1E-05 49.7 6.5 48 175-224 12-59 (334)
475 3nh6_A ATP-binding cassette SU 91.1 0.079 2.7E-06 53.2 2.2 27 178-204 79-105 (306)
476 2ce2_X GTPase HRAS; signaling 91.1 0.12 4.2E-06 45.9 3.3 23 181-203 5-27 (166)
477 3eph_A TRNA isopentenyltransfe 91.1 0.15 5E-06 52.9 4.1 26 179-204 2-27 (409)
478 3zvl_A Bifunctional polynucleo 91.1 0.099 3.4E-06 55.2 3.0 27 177-203 256-282 (416)
479 3gqb_B V-type ATP synthase bet 91.1 0.18 6.2E-06 52.9 4.9 92 179-271 147-263 (464)
480 3mfy_A V-type ATP synthase alp 91.1 0.18 6.1E-06 54.0 4.8 98 170-271 217-336 (588)
481 1z47_A CYSA, putative ABC-tran 91.0 0.12 4E-06 53.0 3.3 27 178-204 40-66 (355)
482 3ld9_A DTMP kinase, thymidylat 91.0 0.32 1.1E-05 46.2 6.2 29 177-205 19-47 (223)
483 3fkq_A NTRC-like two-domain pr 91.0 0.5 1.7E-05 48.9 8.3 59 158-218 110-181 (373)
484 2c61_A A-type ATP synthase non 90.9 0.33 1.1E-05 51.2 6.7 93 179-271 152-261 (469)
485 4edh_A DTMP kinase, thymidylat 90.9 0.42 1.4E-05 45.1 7.0 28 179-206 6-33 (213)
486 1z2a_A RAS-related protein RAB 90.8 0.13 4.5E-06 46.0 3.2 24 180-203 6-29 (168)
487 2www_A Methylmalonic aciduria 90.8 0.27 9.1E-06 50.5 5.9 28 178-205 73-100 (349)
488 2qm8_A GTPase/ATPase; G protei 90.8 0.26 8.8E-06 50.3 5.7 29 177-205 53-81 (337)
489 2qmh_A HPR kinase/phosphorylas 90.8 0.11 3.8E-06 48.1 2.6 25 179-203 34-58 (205)
490 2yyz_A Sugar ABC transporter, 90.7 0.14 4.9E-06 52.5 3.7 27 178-204 28-54 (359)
491 2wjg_A FEOB, ferrous iron tran 90.7 0.14 4.7E-06 47.0 3.3 23 180-202 8-30 (188)
492 3rlf_A Maltose/maltodextrin im 90.7 0.13 4.3E-06 53.2 3.3 27 178-204 28-54 (381)
493 2it1_A 362AA long hypothetical 90.7 0.15 5E-06 52.5 3.7 27 178-204 28-54 (362)
494 4gzl_A RAS-related C3 botulinu 90.6 0.16 5.6E-06 47.5 3.8 28 176-203 27-54 (204)
495 2ewv_A Twitching motility prot 90.6 0.18 6.1E-06 52.3 4.4 109 177-307 134-246 (372)
496 1zj6_A ADP-ribosylation factor 90.6 0.29 1E-05 44.8 5.5 34 168-202 6-39 (187)
497 3con_A GTPase NRAS; structural 90.5 0.14 4.9E-06 47.0 3.2 24 180-203 22-45 (190)
498 2gj8_A MNME, tRNA modification 90.5 0.14 4.9E-06 46.4 3.1 24 180-203 5-28 (172)
499 2ged_A SR-beta, signal recogni 90.5 0.18 6.1E-06 46.5 3.9 26 178-203 47-72 (193)
500 1g29_1 MALK, maltose transport 90.5 0.14 4.7E-06 53.0 3.3 27 178-204 28-54 (372)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.1e-39 Score=364.37 Aligned_cols=290 Identities=11% Similarity=0.082 Sum_probs=227.7
Q ss_pred cchHHHHHHHHHHHhcC---CceEEEEEecCCCcHHHHHHHHHH--HhhccCCCCEEEEEEecCCC--ChHHHHHHHHHH
Q 036977 161 DSRMKVFQDVMEALKDD---KLNIIGVYGMGGVGKTTLVKQVAK--KVMEDKLIDKVVMAEVTQNP--DPQKIQDKLASD 233 (693)
Q Consensus 161 ~gR~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~ 233 (693)
+||++++++|.++|..+ ..++|+|+||||+||||||+++|+ +.+.+.+|+.++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999644 679999999999999999999998 56777889999999999885 789999999999
Q ss_pred hCCCCC-------CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChh
Q 036977 234 LGMKFD-------LNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD 306 (693)
Q Consensus 234 l~~~~~-------~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~ 306 (693)
++.... ...+...+...+++.|++.|||||||||||+..++ .+ + ..+||+||||||++.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~---------~~~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A---------QELRLRCLVTTRDVE 276 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H---------HHTTCEEEEEESBGG
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c---------ccCCCEEEEEcCCHH
Confidence 986532 12345667889999998833999999999998765 21 1 226999999999999
Q ss_pred hhhhhcC-CCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc--------
Q 036977 307 LLCIDMN-SQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE-------- 377 (693)
Q Consensus 307 v~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa-------- 377 (693)
++.. ++ ....|++++|+.++||+||.+.++.. ..++.+.+++.+|+++|+|+|||
T Consensus 277 v~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~---------------~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l 340 (549)
T 2a5y_B 277 ISNA-ASQTCEFIEVTSLEIDECYDFLEAYGMPM---------------PVGEKEEDVLNKTIELSSGNPATLMMFFKSC 340 (549)
T ss_dssp GGGG-CCSCEEEEECCCCCHHHHHHHHHHTSCCC---------------C--CHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHH-cCCCCeEEECCCCCHHHHHHHHHHHhcCC---------------CCchhHHHHHHHHHHHhCCChHHHHHHHHHh
Confidence 9753 43 44689999999999999999998754 12467888999999999999999
Q ss_pred ----c--cccccc---cccccccccchhccccCchhHhhhhhhh-----------cccccCCC-Ccchhhhccc-C--CC
Q 036977 378 ----W--LPELTS---FANTGQIHSDLVVEFPSLLNLEIHGCNN-----------MLRFISTS-SPADTLHSEM-Q--SP 433 (693)
Q Consensus 378 ----w--l~~~~~---~~~~~~i~~~l~~sy~~L~~~~lk~cfl-----------~~~~fp~~-~~~~Li~lw~-~--g~ 433 (693)
| +..+.. ......+..++.+||+.||+ ++|.||+ |||+||++ ... +++|+ + |+
T Consensus 341 ~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~ 417 (549)
T 2a5y_B 341 EPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVD 417 (549)
T ss_dssp CSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-
T ss_pred ccchHHHHHHhHHHhhcccHHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccce
Confidence 3 211111 11345788999999999997 9999999 99999998 555 88999 7 77
Q ss_pred ccccc-----ccCcchhhhhhhhcCCCCchhhhccccccccccccccCCccEEEEcCCcccccccccccCCCCC
Q 036977 434 PLFDE-----KVGIPSSLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKVLILDDLPRLTSFLSKKEEGEPH 502 (693)
Q Consensus 434 ~~~~~-----~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~hdli~~~~~~~~~~~~~~~ 502 (693)
+.... ++.+ .+|++|+++|+++..... ....|+|||++|+++ ..++..++
T Consensus 418 i~~~~~~~~~~~~~-~~l~~L~~rsLl~~~~~~---------------~~~~~~mHdlv~~~a---~~~~~~~~ 472 (549)
T 2a5y_B 418 ICSNEEEQLDDEVA-DRLKRLSKRGALLSGKRM---------------PVLTFKIDHIIHMFL---KHVVDAQT 472 (549)
T ss_dssp ------CCCTHHHH-HHHHHTTTBSSCSEEECS---------------SSCEEECCHHHHHHH---HTTSCTHH
T ss_pred eccCCCCCCHHHHH-HHHHHHHHcCCeeEecCC---------------CceEEEeChHHHHHH---HHHHHHHH
Confidence 74322 3333 499999999999654311 223899999999999 77776544
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.2e-32 Score=339.07 Aligned_cols=286 Identities=17% Similarity=0.218 Sum_probs=222.2
Q ss_pred CCCCCCccccchHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHHHHhhc-c-CCCCEEEEEEecCCCC--hHH
Q 036977 152 NDGKDNEAFDSRMKVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKKVME-D-KLIDKVVMAEVTQNPD--PQK 225 (693)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~-~~F~~~~wv~vs~~~~--~~~ 225 (693)
..|.+...|+||++++++|.+.|. ++++++|+|+||||+||||||+++|++.+. . .+|+.++|+++++..+ ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 455677889999999999999995 457899999999999999999999988643 2 3556899999998644 344
Q ss_pred HHHHHHHHhCCCC----CCCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEE
Q 036977 226 IQDKLASDLGMKF----DLNDSIHHRASRLRERLKQ-EKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIIL 300 (693)
Q Consensus 226 ~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~L~~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Iiv 300 (693)
.+..++..++... ....+.+.....++..+.+ ++|+||||||||+..+|..+ .+||+|||
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~---------------~~~~~ilv 262 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF---------------DNQCQILL 262 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT---------------CSSCEEEE
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh---------------cCCCEEEE
Confidence 5667777776543 2245677888888888876 13999999999998776654 35899999
Q ss_pred ecCChhhhhhhcCCCcEEEcCC-CCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc--
Q 036977 301 TSRSRDLLCIDMNSQKIFWIDA-LSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE-- 377 (693)
Q Consensus 301 TtR~~~v~~~~~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa-- 377 (693)
|||++.++...++....+.+.+ |+.++|++||...++.. .+...+.+.+|+++|+|+|||
T Consensus 263 TtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----------------~~~~~~~~~~i~~~~~glPLal~ 325 (1249)
T 3sfz_A 263 TTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----------------KEDLPAEAHSIIKECKGSPLVVS 325 (1249)
T ss_dssp EESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----------------STTCCTHHHHHHHHTTTCHHHHH
T ss_pred EcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----------------hhhCcHHHHHHHHHhCCCHHHHH
Confidence 9999998744456678999996 99999999999887532 344567899999999999999
Q ss_pred ------------c---ccccccc---c-------cccccccchhccccCchhHhhhhhhhcccccCCC---Ccchhhhcc
Q 036977 378 ------------W---LPELTSF---A-------NTGQIHSDLVVEFPSLLNLEIHGCNNMLRFISTS---SPADTLHSE 429 (693)
Q Consensus 378 ------------w---l~~~~~~---~-------~~~~i~~~l~~sy~~L~~~~lk~cfl~~~~fp~~---~~~~Li~lw 429 (693)
| +..+... . ....+..++.+||+.|++ +.|.||+||++||++ ....++.+|
T Consensus 326 ~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~ 404 (1249)
T 3sfz_A 326 LIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLW 404 (1249)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHH
T ss_pred HHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHh
Confidence 2 1111111 0 123588899999999998 899999999999998 567888999
Q ss_pred cCCCcccccccCcchhhhhhhhcCCCCchhhhccccccccccccccCCccEEEEcCCccccc
Q 036977 430 MQSPPLFDEKVGIPSSLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKVLILDDLPRLTS 491 (693)
Q Consensus 430 ~~g~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~hdli~~~~ 491 (693)
... +..++.++++|++++|++... . +....|+||+++|+++
T Consensus 405 ~~~------~~~~~~~l~~L~~~sl~~~~~----~-----------~~~~~~~~h~l~~~~~ 445 (1249)
T 3sfz_A 405 DLE------TEEVEDILQEFVNKSLLFCNR----N-----------GKSFCYYLHDLQVDFL 445 (1249)
T ss_dssp TCC------HHHHHHHHHHHHHTTSCEEEE----S-----------SSSEEEECCHHHHHHH
T ss_pred CCC------HHHHHHHHHHHHhccceEEec----C-----------CCceEEEecHHHHHHH
Confidence 611 235678999999999995433 1 1223799999999988
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=2.9e-32 Score=307.85 Aligned_cols=270 Identities=15% Similarity=0.097 Sum_probs=201.6
Q ss_pred cccchHHHHHHHHHHHhc-CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCE-EEEEEecCCCChHHHHHHHHHHhCC
Q 036977 159 AFDSRMKVFQDVMEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDK-VVMAEVTQNPDPQKIQDKLASDLGM 236 (693)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (693)
..+||++++++|.++|.+ ++.++|+|+||||+||||||+++|++.+.+.+|+. ++|+++++.++...++..+++.++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 348999999999999975 56899999999999999999999998776677986 9999999999988888888775432
Q ss_pred ---CCCC--------CCCHHHHHHHHHHHHh--cCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecC
Q 036977 237 ---KFDL--------NDSIHHRASRLRERLK--QEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSR 303 (693)
Q Consensus 237 ---~~~~--------~~~~~~~~~~l~~~L~--~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR 303 (693)
.... +.+.+.....+++.|+ .++|+||||||||+..+|+.+ . +||+||||||
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f--------------~-pGSRILVTTR 273 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--------------N-LSCKILLTTR 273 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH--------------H-SSCCEEEECS
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh--------------C-CCeEEEEecc
Confidence 1110 0123445666777662 248999999999998888765 1 4899999999
Q ss_pred ChhhhhhhcCCCcEEEcC------CCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 304 SRDLLCIDMNSQKIFWID------ALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 304 ~~~v~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
++.++.. +.....+.++ +|+.+||++||.+..... ..++..+| |+|+|||
T Consensus 274 d~~Va~~-l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--------------------~eeL~~eI---CgGLPLA 329 (1221)
T 1vt4_I 274 FKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--------------------PQDLPREV---LTTNPRR 329 (1221)
T ss_dssp CSHHHHH-HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--------------------TTTHHHHH---CCCCHHH
T ss_pred ChHHHHh-cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC--------------------HHHHHHHH---hCCCHHH
Confidence 9998642 2222345555 899999999999884211 12334444 9999999
Q ss_pred ------cccccc-----cc-ccccccccchhccccCchhHhh-hhhhhcccccCCC---Ccchhhhccc-CCCccccccc
Q 036977 378 ------WLPELT-----SF-ANTGQIHSDLVVEFPSLLNLEI-HGCNNMLRFISTS---SPADTLHSEM-QSPPLFDEKV 440 (693)
Q Consensus 378 ------wl~~~~-----~~-~~~~~i~~~l~~sy~~L~~~~l-k~cfl~~~~fp~~---~~~~Li~lw~-~g~~~~~~~~ 440 (693)
++.... +. .....+..++.+||+.||+ +. |.||++||+||++ ....++.+|. +|. +
T Consensus 330 LkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe------e 402 (1221)
T 1vt4_I 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK------S 402 (1221)
T ss_dssp HHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS------H
T ss_pred HHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH------H
Confidence 222210 00 1245788999999999998 77 9999999999998 3456889998 551 2
Q ss_pred CcchhhhhhhhcCCCCchhhhccccccccccccccCCccEEEEcCCccccc
Q 036977 441 GIPSSLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKVLILDDLPRLTS 491 (693)
Q Consensus 441 ~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~hdli~~~~ 491 (693)
.++.+|++|+++||++... ..+ .|+|||++++++
T Consensus 403 dAe~~L~eLvdRSLLq~d~---~~~--------------rYrMHDLllELr 436 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQP---KES--------------TISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCS---SSS--------------EEBCCCHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEeC---CCC--------------EEEehHHHHHHh
Confidence 4678999999999996531 122 899999987744
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=5.8e-29 Score=281.61 Aligned_cols=282 Identities=18% Similarity=0.218 Sum_probs=206.9
Q ss_pred CCCCCccccchHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHHHHhhc-cCCC-CEEEEEEecCCCChHHHHH
Q 036977 153 DGKDNEAFDSRMKVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKKVME-DKLI-DKVVMAEVTQNPDPQKIQD 228 (693)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~ 228 (693)
.|.....|+||+.+++.|.+++. .++.++|+|+||||+||||||+.++++... ..+| +.++|++++.. +...++.
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 34566789999999999999997 346799999999999999999999987654 4568 58999999876 3333333
Q ss_pred H---HHHHhCCC----CCCCCCHHHHHHHHHHHHhcC-CcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEE
Q 036977 229 K---LASDLGMK----FDLNDSIHHRASRLRERLKQE-KRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIIL 300 (693)
Q Consensus 229 ~---i~~~l~~~----~~~~~~~~~~~~~l~~~L~~~-k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Iiv 300 (693)
. ++..++.. .....+.+.....+.+.+.+. +++||||||+|+...+..+ .+|++|||
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l---------------~~~~~ilv 262 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF---------------DSQCQILL 262 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT---------------CSSCEEEE
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh---------------cCCCeEEE
Confidence 3 34455521 122356677788888888763 6899999999987655432 34889999
Q ss_pred ecCChhhhhhhcCCCcEEEc---CCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 301 TSRSRDLLCIDMNSQKIFWI---DALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 301 TtR~~~v~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
|||+..++.. +. ...+.+ ++|+.+++++||...++.. .....+.+.+|+++|+|+|||
T Consensus 263 TsR~~~~~~~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----------------~~~~~~~~~~i~~~~~G~PLa 323 (591)
T 1z6t_A 263 TTRDKSVTDS-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----------------KADLPEQAHSIIKECKGSPLV 323 (591)
T ss_dssp EESCGGGGTT-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----------------GGGSCTHHHHHHHHHTTCHHH
T ss_pred ECCCcHHHHh-cC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----------------cccccHHHHHHHHHhCCCcHH
Confidence 9999988543 22 334444 5899999999999988632 122346789999999999999
Q ss_pred --------------c---ccccccc----------ccccccccchhccccCchhHhhhhhhhcccccCCC---Ccchhhh
Q 036977 378 --------------W---LPELTSF----------ANTGQIHSDLVVEFPSLLNLEIHGCNNMLRFISTS---SPADTLH 427 (693)
Q Consensus 378 --------------w---l~~~~~~----------~~~~~i~~~l~~sy~~L~~~~lk~cfl~~~~fp~~---~~~~Li~ 427 (693)
| +..+... .....+..++..||+.||+ +.|.||+++|+||++ +...+..
T Consensus 324 l~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~ 402 (591)
T 1z6t_A 324 VSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCI 402 (591)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHH
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHH
Confidence 3 1111110 1123677889999999998 899999999999987 3456777
Q ss_pred cccCCCcccccccCcchhhhhhhhcCCCCchhhhccccccccccccccCCccEEEEcCCccccc
Q 036977 428 SEMQSPPLFDEKVGIPSSLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKVLILDDLPRLTS 491 (693)
Q Consensus 428 lw~~g~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~hdli~~~~ 491 (693)
+|... ...+..+++.|+.+|++.... . +....|+||+++|+++
T Consensus 403 l~~~~------~~~~~~~l~~L~~~~Ll~~~~-~--------------~~~~~~~~H~lv~~~~ 445 (591)
T 1z6t_A 403 LWDME------TEEVEDILQEFVNKSLLFCDR-N--------------GKSFRYYLHDLQVDFL 445 (591)
T ss_dssp HHTCC------HHHHHHHHHHHHHTTSSEEEE-E--------------TTEEEEECCHHHHHHH
T ss_pred HhccC------HHHHHHHHHHHHhCcCeEEec-C--------------CCccEEEEcHHHHHHH
Confidence 88621 124567899999999995332 1 1123899999999998
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.38 E-value=3.8e-12 Score=133.47 Aligned_cols=268 Identities=12% Similarity=0.043 Sum_probs=156.7
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC------ChHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP------DPQKIQD 228 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~ 228 (693)
.....|+||+++++.+.+++..+ +++.|+|++|+|||||++.+++.. + ++|+++.... +...+..
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHH
Confidence 45577999999999999998754 799999999999999999999774 1 7788775432 5666677
Q ss_pred HHHHHhCC-----------------CCC-CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCccccccc
Q 036977 229 KLASDLGM-----------------KFD-LNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDRE 290 (693)
Q Consensus 229 ~i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~ 290 (693)
.+.+.+.. ..+ ...+..+....+.+.....++.+||+||++....+..- ..+.+...++.
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~--~~~~~~~~L~~ 157 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR--GGKELLALFAY 157 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT--TTHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc--chhhHHHHHHH
Confidence 77666542 000 01345555666666555323899999999876432100 00000000110
Q ss_pred c--cCCCeEEEEecCChhhhhhh----------cCC-CcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCC
Q 036977 291 D--DQRRCTIILTSRSRDLLCID----------MNS-QKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSER 357 (693)
Q Consensus 291 ~--~~~~~~IivTtR~~~v~~~~----------~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (693)
. ...+.++|+|++........ .+. ...+.+.+|+.+|+.+++...+... ..
T Consensus 158 ~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~----------------~~ 221 (350)
T 2qen_A 158 AYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREV----------------NL 221 (350)
T ss_dssp HHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTT----------------TC
T ss_pred HHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHc----------------CC
Confidence 0 12578899998876432110 111 2489999999999999998754321 11
Q ss_pred CchhhHHHHHhhhcCCCcccc--c-ccc----ccccc----ccccccchhccccCc---hhHhhhhhhhcccccCCCCcc
Q 036977 358 DEGKLIELKVFPKLHSLKLEW--L-PEL----TSFAN----TGQIHSDLVVEFPSL---LNLEIHGCNNMLRFISTSSPA 423 (693)
Q Consensus 358 ~~~~~~~~~I~~~c~glPLaw--l-~~~----~~~~~----~~~i~~~l~~sy~~L---~~~~lk~cfl~~~~fp~~~~~ 423 (693)
....+.+..|+..++|+|++. + ... ..... ...+...+.-.+..+ ++ ..+..+..++. ......
T Consensus 222 ~~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~l~~la~-g~~~~~ 299 (350)
T 2qen_A 222 DVPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSP-RYVDILRAIAL-GYNRWS 299 (350)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHT-TCCSHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCCh-hHHHHHHHHHh-CCCCHH
Confidence 112457788999999999962 1 100 00000 001111122223333 33 56777777776 211333
Q ss_pred hhhhccc--C-CCcccccccCcchhhhhhhhcCCC
Q 036977 424 DTLHSEM--Q-SPPLFDEKVGIPSSLVNLKVSGCP 455 (693)
Q Consensus 424 ~Li~lw~--~-g~~~~~~~~~~~~~l~~L~~~~l~ 455 (693)
.+..... . |.. ......+++.|...+++
T Consensus 300 ~l~~~~~~~~~~~~----~~~~~~~l~~L~~~gli 330 (350)
T 2qen_A 300 LIRDYLAVKGTKIP----EPRLYALLENLKKMNWI 330 (350)
T ss_dssp HHHHHHHHTTCCCC----HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCCCC----HHHHHHHHHHHHhCCCE
Confidence 3332221 1 121 12355789999999988
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.28 E-value=3.4e-11 Score=129.32 Aligned_cols=278 Identities=13% Similarity=0.010 Sum_probs=168.6
Q ss_pred ccccchHHHHHHHHHHH-h----c--CCceEEEE--EecCCCcHHHHHHHHHHHhhcc---CCCC-EEEEEEecCCCChH
Q 036977 158 EAFDSRMKVFQDVMEAL-K----D--DKLNIIGV--YGMGGVGKTTLVKQVAKKVMED---KLID-KVVMAEVTQNPDPQ 224 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~ 224 (693)
..|+||+++++.+..++ . + ...+.+.| +|++|+||||||+.+++..... ..++ .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 4 2 34567777 9999999999999999886542 1233 46788887778889
Q ss_pred HHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCccC--------ccccCCCCCCccccccccc--
Q 036977 225 KIQDKLASDLGMKFDL-NDSIHHRASRLRERLK-QEKRVLIILDNIWTKLE--------LDAVGIPSGDVDEKDREDD-- 292 (693)
Q Consensus 225 ~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~L~-~~k~~LlVlDdv~~~~~--------~~~l~~~~~~~~~~~~~~~-- 292 (693)
.++..++.+++..... ..+.......+.+.+. .+++++||+||++.... +..+...+ ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~-------~~~~~~ 174 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVH-------EEIPSR 174 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHH-------HHSCCT
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHH-------HhcccC
Confidence 9999999999765432 2345666667777765 23789999999987532 11111110 0001
Q ss_pred C--CCeEEEEecCChhhhhh-------h-cCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhh
Q 036977 293 Q--RRCTIILTSRSRDLLCI-------D-MNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKL 362 (693)
Q Consensus 293 ~--~~~~IivTtR~~~v~~~-------~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (693)
+ .+..||+||+...+... . ......+.+.+++.++++++|...+.... ....-..+
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~--------------~~~~~~~~ 240 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL--------------RDTVWEPR 240 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB--------------CTTSCCHH
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC--------------CCCCCChH
Confidence 2 45668888876543211 0 11123499999999999999987764220 01112245
Q ss_pred HHHHHhhhcC------CCccc--------c-cccc-ccccc-cc-------cc--ccchhccccCchhHhhhhhhhcccc
Q 036977 363 IELKVFPKLH------SLKLE--------W-LPEL-TSFAN-TG-------QI--HSDLVVEFPSLLNLEIHGCNNMLRF 416 (693)
Q Consensus 363 ~~~~I~~~c~------glPLa--------w-l~~~-~~~~~-~~-------~i--~~~l~~sy~~L~~~~lk~cfl~~~~ 416 (693)
....|++.++ |.|.. + .... ..... .. .. ...+.-++..||+ ..+.++..++.
T Consensus 241 ~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~-~~~~~l~aia~ 319 (412)
T 1w5s_A 241 HLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSI-HELIILRLIAE 319 (412)
T ss_dssp HHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCH-HHHHHHHHHHH
Confidence 6778888888 99964 1 0000 00000 00 11 2344556788886 77888877775
Q ss_pred cC---CC--Ccchhhhccc------CCCcccccccCcchhhhhhhhcCCCCch
Q 036977 417 IS---TS--SPADTLHSEM------QSPPLFDEKVGIPSSLVNLKVSGCPKLE 458 (693)
Q Consensus 417 fp---~~--~~~~Li~lw~------~g~~~~~~~~~~~~~l~~L~~~~l~~~~ 458 (693)
+. .+ ...++...+. .|..... ...+..+++.|...+++...
T Consensus 320 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 320 ATLGGMEWINAGLLRQRYEDASLTMYNVKPRG-YTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCCCCccHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhCCCEEee
Confidence 43 12 2233222121 1221111 12345778999999998443
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=4.8e-11 Score=125.31 Aligned_cols=189 Identities=15% Similarity=0.164 Sum_probs=116.1
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-----CChHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-----PDPQKIQDK 229 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~ 229 (693)
.....|+||+++++.+.+ +.. +++.|+|++|+|||||++.+++.... ..+|+++... .+.......
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHH
Confidence 345679999999999999 754 69999999999999999999987642 2578887642 344555555
Q ss_pred HHHHhC--------------C----CCC-----------CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCC
Q 036977 230 LASDLG--------------M----KFD-----------LNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIP 280 (693)
Q Consensus 230 i~~~l~--------------~----~~~-----------~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~ 280 (693)
+.+.+. . ..+ ...........+.+. .. ++.+||+||++......
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~-~~~vlvlDe~~~~~~~~----- 153 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQA-SK-DNVIIVLDEAQELVKLR----- 153 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHT-CS-SCEEEEEETGGGGGGCT-----
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhc-CC-CCeEEEEECHHHhhccC-----
Confidence 444331 0 000 012233333333221 11 38999999997653210
Q ss_pred CCCcccccccc--cCCCeEEEEecCChhhhhhh----------cCC-CcEEEcCCCCHHHHHHHHHHhhhhhhhcccccc
Q 036977 281 SGDVDEKDRED--DQRRCTIILTSRSRDLLCID----------MNS-QKIFWIDALSKEEALHLAKLQHLEISYCESMEG 347 (693)
Q Consensus 281 ~~~~~~~~~~~--~~~~~~IivTtR~~~v~~~~----------~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~ 347 (693)
.+.+...++.. ...+.++|+|++........ .+. ...+.+.+|+.+++.+++...+...
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~-------- 225 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA-------- 225 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHH--------
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHc--------
Confidence 00001111100 12467899999986532111 111 3589999999999999998765321
Q ss_pred ccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 348 VVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
+. .... . ..|+..++|+|++
T Consensus 226 -----~~-~~~~---~-~~i~~~t~G~P~~ 245 (357)
T 2fna_A 226 -----DI-DFKD---Y-EVVYEKIGGIPGW 245 (357)
T ss_dssp -----TC-CCCC---H-HHHHHHHCSCHHH
T ss_pred -----CC-CCCc---H-HHHHHHhCCCHHH
Confidence 00 1111 1 7899999999997
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.20 E-value=8.1e-11 Score=122.14 Aligned_cols=158 Identities=19% Similarity=0.220 Sum_probs=119.6
Q ss_pred hhcccccccccccCcccccccc--CCCcccc-----cCCCCCCccc-----------ccCcceeeecCCCCCCcCCCchh
Q 036977 511 TIQKCYEEMIGFRDIKDLQLSH--FPRLQEI-----WHGQALPVSF-----------FNNLRELVVDDCTNMSSAIPANL 572 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~~l~~~~--~~~L~~~-----~~~~~~~~~~-----------~~~L~~L~i~~c~~~~~~~~~~~ 572 (693)
.+.+++.|.+.+|.+..+|... +++|+.+ .....+|... +++|+.|.+.+|. +. ..|..
T Consensus 125 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~--~lp~~ 201 (328)
T 4fcg_A 125 QFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR--SLPAS 201 (328)
T ss_dssp GGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC--CCCGG
T ss_pred ccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC--cchHh
Confidence 3556777777777776665432 4555422 1222344332 6789999998874 33 45678
Q ss_pred hcCCCCCCEEEecCCCC------CccccccceeccCCCCc----ccccCCCCCcCEeecCCCcCcccccccccCCCCcCE
Q 036977 573 LRCLNNLRYLEVRNCDS------LEEVLHLEELNAKEEHI----GPLFPRLSWLRLIDLPKLKRFYNFTGNIIELPELRY 642 (693)
Q Consensus 573 l~~L~~L~~L~l~~c~~------l~~l~~L~~L~l~~~~l----~~~~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~ 642 (693)
+..+++|++|++++|.- +..+++|++|++++|.+ +..++.+++|++|+|++|..+..+|..+..+++|++
T Consensus 202 l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 99999999999998852 33678899999998654 344788999999999999999999999999999999
Q ss_pred Eecccccccccccccccccceeecccccc
Q 036977 643 LTIENCPDMETFISNSTSVLHMTADNKEA 671 (693)
Q Consensus 643 L~i~~C~~L~~lp~~~~~l~~l~~~~~~~ 671 (693)
|++++|+.+..+|..+.++..|++...+.
T Consensus 282 L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 99999999999999988888777655443
No 9
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.18 E-value=2.8e-10 Score=110.71 Aligned_cols=182 Identities=11% Similarity=0.021 Sum_probs=115.2
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHh
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDL 234 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 234 (693)
.....++||++.++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 44567899999999999999876666699999999999999999998864432112344455544444333322222111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCChhhh-hhh
Q 036977 235 GMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL-CID 311 (693)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~-~~~ 311 (693)
.... ....++.+||+||++... ..+.+...+.. ...++++|+||+..... ...
T Consensus 94 ~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~--------~~~~~~~i~~~~~~~~~~~~l 149 (226)
T 2chg_A 94 RTAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEM--------YSKSCRFILSCNYVSRIIEPI 149 (226)
T ss_dssp TSCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHH--------TTTTEEEEEEESCGGGSCHHH
T ss_pred cccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHh--------cCCCCeEEEEeCChhhcCHHH
Confidence 1100 001367999999998653 22222111111 34567888888776432 111
Q ss_pred cCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 312 MNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 312 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
......+.+.+++.++..+++.+.+... ...-..+....+++.++|.|.
T Consensus 150 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~l~~~~~g~~r 198 (226)
T 2chg_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKE----------------GVKITEDGLEALIYISGGDFR 198 (226)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHH----------------TCCBCHHHHHHHHHHHTTCHH
T ss_pred HHhCceeecCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCCCHH
Confidence 2234589999999999999999887533 111224566778888999886
No 10
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.17 E-value=2.2e-10 Score=113.08 Aligned_cols=181 Identities=12% Similarity=0.092 Sum_probs=112.3
Q ss_pred CCCccccchHHHHHHHHHHHhcCC-ceEEEEEecCCCcHHHHHHHHHHHhhccCCCC-------------------EEEE
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLID-------------------KVVM 214 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------------------~~~w 214 (693)
.....++||+..++.+..++.... .+.+.|+|++|+||||+|+.+++.......+. ..+.
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 99 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEE
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEE
Confidence 445678999999999999987654 46899999999999999999998875432110 1111
Q ss_pred EEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCccccccccc
Q 036977 215 AEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDD 292 (693)
Q Consensus 215 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 292 (693)
+.... .........+++.+.... ..+++.+||+||++... .++.+...+.. .
T Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~vlviDe~~~l~~~~~~~l~~~l~~--------~ 153 (250)
T 1njg_A 100 IDAAS-RTKVEDTRDLLDNVQYAP-----------------ARGRFKVYLIDEVHMLSRHSFNALLKTLEE--------P 153 (250)
T ss_dssp EETTC-GGGHHHHHHHHHSCCCSC-----------------SSSSSEEEEEETGGGSCHHHHHHHHHHHHS--------C
T ss_pred ecCcc-cccHHHHHHHHHHhhhch-----------------hcCCceEEEEECcccccHHHHHHHHHHHhc--------C
Confidence 11111 011111222222221110 01367999999997642 23333221111 3
Q ss_pred CCCeEEEEecCChhhh-hhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 293 QRRCTIILTSRSRDLL-CIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
..+..+|+||+..... .........+.+.+++.++..+++...+... ...-..+....|++.|
T Consensus 154 ~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~----------------~~~~~~~~~~~l~~~~ 217 (250)
T 1njg_A 154 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE----------------HIAHEPRALQLLARAA 217 (250)
T ss_dssp CTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHT----------------TCCBCHHHHHHHHHHH
T ss_pred CCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhc----------------CCCCCHHHHHHHHHHc
Confidence 4577888888765432 1112334689999999999999999887533 1122245678899999
Q ss_pred CCCccc
Q 036977 372 HSLKLE 377 (693)
Q Consensus 372 ~glPLa 377 (693)
+|.|..
T Consensus 218 ~G~~~~ 223 (250)
T 1njg_A 218 EGSLRD 223 (250)
T ss_dssp TTCHHH
T ss_pred CCCHHH
Confidence 999974
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.16 E-value=9.2e-11 Score=121.71 Aligned_cols=165 Identities=20% Similarity=0.283 Sum_probs=126.6
Q ss_pred hhcccccccccccCccccccc--cCCCcccc----cCCCCCCccc--ccCcceeeecCCCCCCcCCCchhhc--------
Q 036977 511 TIQKCYEEMIGFRDIKDLQLS--HFPRLQEI----WHGQALPVSF--FNNLRELVVDDCTNMSSAIPANLLR-------- 574 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~~l~~~--~~~~L~~~----~~~~~~~~~~--~~~L~~L~i~~c~~~~~~~~~~~l~-------- 574 (693)
.+.+++.|.+.++.+..+|.. .+++|+.+ .....+|..+ +++|+.|.+.+|..... .|..+.
T Consensus 102 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~--~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTE--LPEPLASTDASGEH 179 (328)
T ss_dssp GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCC--CCSCSEEEC-CCCE
T ss_pred hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccc--cChhHhhccchhhh
Confidence 366788999999998877743 36666622 1223556543 57899999999877653 344444
Q ss_pred -CCCCCCEEEecCCC------CCccccccceeccCCCCcccc---cCCCCCcCEeecCCCcCcccccccccCCCCcCEEe
Q 036977 575 -CLNNLRYLEVRNCD------SLEEVLHLEELNAKEEHIGPL---FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLT 644 (693)
Q Consensus 575 -~L~~L~~L~l~~c~------~l~~l~~L~~L~l~~~~l~~~---~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~ 644 (693)
.+++|++|++++|. .+..+++|++|++++|.+..+ ++.+++|++|+|++|.....+|..++.+++|++|+
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp EESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred ccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 49999999998874 234678899999999776655 78899999999999999999999999999999999
Q ss_pred cccccccccccccc---cccceeeccccccccccch
Q 036977 645 IENCPDMETFISNS---TSVLHMTADNKEAQKLKSE 677 (693)
Q Consensus 645 i~~C~~L~~lp~~~---~~l~~l~~~~~~~~~~~~~ 677 (693)
+++|..+..+|..+ .+|+.|.+++|......+.
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 99999999998754 5677888888876555443
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.14 E-value=2.8e-10 Score=120.88 Aligned_cols=200 Identities=19% Similarity=0.190 Sum_probs=131.8
Q ss_pred ccccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHHHHhhccCC-CCEEEEEEecCCCChHHHHHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKL-IDKVVMAEVTQNPDPQKIQDKLAS 232 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~ 232 (693)
..|+||+++++.+.+++. ......+.|+|++|+||||||+.+++....... -..++|+++....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999886 345678999999999999999999998765311 235778888777778888888888
Q ss_pred HhCCCCCC-CCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCccCc--cccCCCCCCcccccccc---cCCCeEEEEecCCh
Q 036977 233 DLGMKFDL-NDSIHHRASRLRERLKQ-EKRVLIILDNIWTKLEL--DAVGIPSGDVDEKDRED---DQRRCTIILTSRSR 305 (693)
Q Consensus 233 ~l~~~~~~-~~~~~~~~~~l~~~L~~-~k~~LlVlDdv~~~~~~--~~l~~~~~~~~~~~~~~---~~~~~~IivTtR~~ 305 (693)
.++..... ..+..+....+.+.+.. +++.+||+|+++..... ... +..+++.. ...+..+|+||+..
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~------l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDI------LYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTH------HHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHH------HHHHhhchhhcCCCeEEEEEEECCC
Confidence 88654332 23456666677777764 24899999999765311 010 00011111 23356678888876
Q ss_pred hhhhhh----c-C-CCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcC---CCcc
Q 036977 306 DLLCID----M-N-SQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLH---SLKL 376 (693)
Q Consensus 306 ~v~~~~----~-~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~---glPL 376 (693)
...... . . ....+.+.+++.++..+++...+.... ....-..+....+++.++ |.|.
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~G~~r 239 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF--------------KPGVLPDNVIKLCAALAAREHGDAR 239 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB--------------CSSCSCHHHHHHHHHHHHHTTCCHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc--------------cCCCCCHHHHHHHHHHHHHhcCCHH
Confidence 432110 0 1 125899999999999999998764220 011222455666777776 8887
Q ss_pred c
Q 036977 377 E 377 (693)
Q Consensus 377 a 377 (693)
.
T Consensus 240 ~ 240 (386)
T 2qby_A 240 R 240 (386)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.12 E-value=3e-10 Score=120.62 Aligned_cols=171 Identities=16% Similarity=0.147 Sum_probs=118.6
Q ss_pred ccccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHHHHhhccC----C--CCEEEEEEecCCC-ChHHH
Q 036977 158 EAFDSRMKVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDK----L--IDKVVMAEVTQNP-DPQKI 226 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~--F~~~~wv~vs~~~-~~~~~ 226 (693)
..++||+++++.+..++. .+..+.+.|+|++|+||||+|+.+++...... . ...++|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 678999999999987774 34567899999999999999999999864321 1 2357888887777 88888
Q ss_pred HHHHHHHh-CCCCCC-CCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--cccc-CCCCCCcccccccccCCCeEEEEe
Q 036977 227 QDKLASDL-GMKFDL-NDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--LDAV-GIPSGDVDEKDREDDQRRCTIILT 301 (693)
Q Consensus 227 ~~~i~~~l-~~~~~~-~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--~~~l-~~~~~~~~~~~~~~~~~~~~IivT 301 (693)
+..++.++ +..... ..+.......+.+.+.. ++.+|||||++.... .... ...+.. +. .+..||+|
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~-------~~-~~~~iI~~ 170 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLR-------SD-ANISVIMI 170 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHT-------SS-SCEEEEEE
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhc-------CC-cceEEEEE
Confidence 89988887 332221 23345667777888876 445999999986532 1111 111111 12 57889999
Q ss_pred cCChhhh----hhh-cCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 302 SRSRDLL----CID-MNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 302 tR~~~v~----~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
|+..... ... ......+.+.+++.++..+++...+.
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 9876321 110 11123899999999999999998864
No 14
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.11 E-value=1.9e-10 Score=98.38 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=63.8
Q ss_pred HHHHhhhhhhhhhhccccccccchhhHHHHHHHHHHHHHHHHHHhHHHHHHhhcC-CcchHHHHHHHHHHHHHHHHHHHh
Q 036977 12 IVSEGAKSLFKPIIRQISYVFKYQSYIDDLKDQVKQLGYKRETVQQPVNHARLQG-DELYEGVTDWLHSVDEFISEGVAK 90 (693)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~l~~ae~~~-~~~~~~~~~wl~~l~~~~y~~~~e 90 (693)
+++.+++++.+.+.+++.. ..+++++++.|+..|..|+++|.+|+.+. ...++.++.|+.+||+++|| +|
T Consensus 2 ~v~~ll~KL~~ll~~E~~l-------~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD--~E 72 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKL-------HKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYV--IE 72 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH--HH
T ss_pred cHHHHHHHHHHHHHHHHHH-------HhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHH--HH
Confidence 4556777777777777665 45567778888888888888999998873 24689999999999999999 99
Q ss_pred HHHhHHHHh
Q 036977 91 SIIDDEERA 99 (693)
Q Consensus 91 d~ld~~~~~ 99 (693)
|+||+|...
T Consensus 73 D~iD~f~~~ 81 (115)
T 3qfl_A 73 DVVDKFLVQ 81 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999654
No 15
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.05 E-value=1.3e-09 Score=115.78 Aligned_cols=201 Identities=14% Similarity=0.145 Sum_probs=131.3
Q ss_pred ccccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHHHHhhcc----CCCCEEEEEEecCCCChHHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKKVMED----KLIDKVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~ 229 (693)
..++||+++++.+..++. ....+.+.|+|++|+||||+|+.+++..... +.-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 678999999999999884 2456789999999999999999999886432 11124678888888888999999
Q ss_pred HHHHhCCCCCC-CCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCccCc----cccCCCCCCccccccccc-CCCeEEEEec
Q 036977 230 LASDLGMKFDL-NDSIHHRASRLRERLKQ-EKRVLIILDNIWTKLEL----DAVGIPSGDVDEKDREDD-QRRCTIILTS 302 (693)
Q Consensus 230 i~~~l~~~~~~-~~~~~~~~~~l~~~L~~-~k~~LlVlDdv~~~~~~----~~l~~~~~~~~~~~~~~~-~~~~~IivTt 302 (693)
++.+++..... ..+..+....+.+.+.. +++.+||+||++..... +.+...+. ...... ..+..+|.||
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~----~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITR----INQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHH----GGGCC-----CEEEEEC
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhh----chhhcCCCceEEEEEEE
Confidence 99999765433 23456666777777753 35889999999865321 11100000 000001 3456788888
Q ss_pred CChhhh----hhhcCC--CcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcC---C
Q 036977 303 RSRDLL----CIDMNS--QKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLH---S 373 (693)
Q Consensus 303 R~~~v~----~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~---g 373 (693)
+..... ...... ...+.+.+++.++..+++...+.... ....-..+....+++.++ |
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~G 240 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAF--------------NPGVLDPDVVPLCAALAAREHG 240 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHB--------------CTTTBCSSHHHHHHHHHHSSSC
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhc--------------cCCCCCHHHHHHHHHHHHHhcc
Confidence 766321 111111 14799999999999999998865310 011112345566777776 8
Q ss_pred Ccc
Q 036977 374 LKL 376 (693)
Q Consensus 374 lPL 376 (693)
.|-
T Consensus 241 ~~r 243 (387)
T 2v1u_A 241 DAR 243 (387)
T ss_dssp CHH
T ss_pred CHH
Confidence 884
No 16
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.01 E-value=5.7e-09 Score=110.91 Aligned_cols=192 Identities=14% Similarity=0.121 Sum_probs=129.9
Q ss_pred ccccchHHHHHHHHHHHhc----CCce--EEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKD----DKLN--IIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLA 231 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 231 (693)
..++||+++++.+..++.. .... .+.|+|++|+|||||++.+++...... -..++|++++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5789999999999998864 3334 899999999999999999998876431 13577888888888889999999
Q ss_pred HHhCCCCCC-CCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCcc--CccccCCCCCCcccccccccC---CCeEEEEecCC
Q 036977 232 SDLGMKFDL-NDSIHHRASRLRERLKQ-EKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQ---RRCTIILTSRS 304 (693)
Q Consensus 232 ~~l~~~~~~-~~~~~~~~~~l~~~L~~-~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~---~~~~IivTtR~ 304 (693)
..++..... ..+.......+.+.+.. +++.+||+||++... ....+...+.. ... .+..||++|+.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~-------~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQE-------ADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTC-------HHHHSSCCEEEEEEESS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHh-------CCCCCcCCEEEEEEECC
Confidence 998765432 23556666666666653 357899999998652 12222111100 011 46778888877
Q ss_pred hhhhhhhc------CCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 305 RDLLCIDM------NSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 305 ~~v~~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
........ -....+.+.+++.++..+++...+.... ....-..+....|++.+
T Consensus 169 ~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 169 DAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL--------------AEGSYSEDILQMIADIT 227 (389)
T ss_dssp THHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB--------------CTTSSCHHHHHHHHHHH
T ss_pred chHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc--------------CCCCCCHHHHHHHHHHH
Confidence 64321100 0123799999999999999988875320 01112245667788888
No 17
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=2.2e-09 Score=110.95 Aligned_cols=185 Identities=14% Similarity=0.062 Sum_probs=115.8
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASD 233 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 233 (693)
|.....++||+..++.+..++..+..+.+.++|++|+||||+|+.+++..........+++++.+.......+ +++++.
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 95 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKH 95 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHH
Confidence 3445678999999999999998776656999999999999999999998643211123455555443333222 222222
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCChhhh-hh
Q 036977 234 LGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL-CI 310 (693)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~-~~ 310 (693)
+..... .+..+++.++|+||++... .++.+...+.. ...++.+|+||+...-. ..
T Consensus 96 ~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~--------~~~~~~~il~~~~~~~l~~~ 153 (323)
T 1sxj_B 96 FAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMEL--------YSNSTRFAFACNQSNKIIEP 153 (323)
T ss_dssp HHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH--------TTTTEEEEEEESCGGGSCHH
T ss_pred HHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhc--------cCCCceEEEEeCChhhchhH
Confidence 210000 0002257999999998652 22222111111 33567788888765422 11
Q ss_pred hcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 311 DMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 311 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
.......+.+.+++.++..+++...+... ...-..+....|++.++|.|..
T Consensus 154 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~l~~~~~G~~r~ 204 (323)
T 1sxj_B 154 LQSQCAILRYSKLSDEDVLKRLLQIIKLE----------------DVKYTNDGLEAIIFTAEGDMRQ 204 (323)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHH----------------TCCBCHHHHHHHHHHHTTCHHH
T ss_pred HHhhceEEeecCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCCCHHH
Confidence 12334589999999999999998877532 1122245677889999999853
No 18
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.96 E-value=3.2e-09 Score=101.28 Aligned_cols=139 Identities=17% Similarity=0.241 Sum_probs=104.7
Q ss_pred hhhcccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC
Q 036977 510 STIQKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS 589 (693)
Q Consensus 510 ~~~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~ 589 (693)
..+.+++.+.+.++.+..++ . + ..+++|+.|.+.+| ... .+..+..+++|++|++++|.-
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~----l-----------~~l~~L~~L~l~~n-~~~---~~~~l~~l~~L~~L~l~~n~l 100 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-G----I-----------EYAHNIKDLTINNI-HAT---NYNPISGLSNLERLRIMGKDV 100 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-T----G-----------GGCTTCSEEEEESC-CCS---CCGGGTTCTTCCEEEEECTTC
T ss_pred hhcCCccEEeccCCCccChH-H----H-----------hcCCCCCEEEccCC-CCC---cchhhhcCCCCCEEEeECCcc
Confidence 45667788888877776554 1 1 22578999999998 332 235788999999999988752
Q ss_pred -------CccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc--
Q 036977 590 -------LEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS-- 656 (693)
Q Consensus 590 -------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~-- 656 (693)
+..+++|++|++++|.+... ++.+++|++|++++|..+..+| .+..+++|++|++++| .+..+|.
T Consensus 101 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~l~ 178 (197)
T 4ezg_A 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRGIE 178 (197)
T ss_dssp BGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTTGG
T ss_pred CcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHHhc
Confidence 33678999999999887652 8899999999999977688888 6889999999999999 4777763
Q ss_pred cccccceeeccccc
Q 036977 657 NSTSVLHMTADNKE 670 (693)
Q Consensus 657 ~~~~l~~l~~~~~~ 670 (693)
...+|+.|.+.+..
T Consensus 179 ~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 179 DFPKLNQLYAFSQT 192 (197)
T ss_dssp GCSSCCEEEECBC-
T ss_pred cCCCCCEEEeeCcc
Confidence 23556666665443
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.89 E-value=9.9e-09 Score=100.39 Aligned_cols=123 Identities=17% Similarity=0.244 Sum_probs=92.2
Q ss_pred CCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCC
Q 036977 544 ALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPR 612 (693)
Q Consensus 544 ~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~ 612 (693)
.+|.+..++|+.|.+.++.-.. ..+..+..+++|++|+++++.- +..+++|++|++++|.+..+ +..
T Consensus 33 ~ip~~~~~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 33 SVPAGIPTNAQILYLHDNQITK--LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp SCCSCCCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCCCCCCCCEEEcCCCccCc--cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCc
Confidence 3444445788888888865433 3466788888999999887751 23577888899888877665 678
Q ss_pred CCCcCEeecCCCcCcccccccccCCCCcCEEeccccccccccccc----ccccceeeccccc
Q 036977 613 LSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISN----STSVLHMTADNKE 670 (693)
Q Consensus 613 L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~----~~~l~~l~~~~~~ 670 (693)
+++|++|+|++ +.+..+|..+..+++|++|+++++ ++..+|.. ..+|+.|.+.+.+
T Consensus 111 l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 111 LVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred chhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 88999999998 668889988889999999999988 68888753 2567777776643
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.89 E-value=1.5e-08 Score=101.74 Aligned_cols=117 Identities=19% Similarity=0.280 Sum_probs=74.2
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCCCCCcCE
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPRLSWLRL 618 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~ 618 (693)
+++|++|.+.++.-.. .++..+..+++|++|+++++.- +..+++|++|++++|.+..+ +..+++|+.
T Consensus 84 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQA--LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp CTTCCEEECCSSCCCC--CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCcCCc--CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence 3466777776654222 3344566777777777766531 23567777777777665544 566777777
Q ss_pred eecCCCcCccccccc-ccCCCCcCEEeccccccccccccc----ccccceeeccccc
Q 036977 619 IDLPKLKRFYNFTGN-IIELPELRYLTIENCPDMETFISN----STSVLHMTADNKE 670 (693)
Q Consensus 619 L~L~~c~~l~~LP~~-i~~L~~L~~L~i~~C~~L~~lp~~----~~~l~~l~~~~~~ 670 (693)
|+|++ +.+..+|.. +..+++|++|++++| ++..+|.. ..+|+.|.+.+++
T Consensus 162 L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 162 LRLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eEecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 77777 456666654 557777777777777 56676653 2456666665543
No 21
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.89 E-value=1.8e-08 Score=100.07 Aligned_cols=117 Identities=17% Similarity=0.257 Sum_probs=82.5
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCCCCCcCE
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPRLSWLRL 618 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~ 618 (693)
+++|+.|.+.++.-.. .++..+..+++|++|+++++.- +..+++|++|++++|.+..+ +..+++|++
T Consensus 58 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 135 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135 (251)
T ss_dssp CTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCEEECCCCcCCc--cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence 4678888887754322 3455677888888888877642 23567888888888776655 567888888
Q ss_pred eecCCCcCcccccc-cccCCCCcCEEeccccccccccccc----ccccceeeccccc
Q 036977 619 IDLPKLKRFYNFTG-NIIELPELRYLTIENCPDMETFISN----STSVLHMTADNKE 670 (693)
Q Consensus 619 L~L~~c~~l~~LP~-~i~~L~~L~~L~i~~C~~L~~lp~~----~~~l~~l~~~~~~ 670 (693)
|+|++ +.+..+|. .+..+++|++|+++++ ++..+|.. ..+|+.|.+.+++
T Consensus 136 L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 136 LRLNT-NQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EECcC-CcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 88887 56777776 4678888888888887 57777652 2456677776644
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.86 E-value=3e-08 Score=99.76 Aligned_cols=140 Identities=18% Similarity=0.250 Sum_probs=74.9
Q ss_pred hhcccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-
Q 036977 511 TIQKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS- 589 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~- 589 (693)
.+.+++.|.+.++.+..++.- ..+++|++|.+.+|.-.. .++..+..+++|++|++++|.-
T Consensus 61 ~l~~L~~L~l~~n~l~~~~~l----------------~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~ 122 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDISAL----------------KELTNLTYLILTGNQLQS--LPNGVFDKLTNLKELVLVENQLQ 122 (272)
T ss_dssp GCTTCCEEECTTSCCCCCGGG----------------TTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCCCcEEECCCCCCCCchhh----------------cCCCCCCEEECCCCccCc--cChhHhcCCcCCCEEECCCCcCC
Confidence 355667777777766554311 113456666666553221 2334455666666666655531
Q ss_pred ------CccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccc-cCCCCcCEEeccccccccccccc-
Q 036977 590 ------LEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNI-IELPELRYLTIENCPDMETFISN- 657 (693)
Q Consensus 590 ------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i-~~L~~L~~L~i~~C~~L~~lp~~- 657 (693)
+..+++|++|++++|.+..+ ++.+++|++|++++| .+..+|... ..+++|++|++++| ++..+|+.
T Consensus 123 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 200 (272)
T 3rfs_A 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGV 200 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccCHHH
Confidence 22455666666666555444 455666666666663 455555443 45666666666666 35555442
Q ss_pred ---ccccceeeccccc
Q 036977 658 ---STSVLHMTADNKE 670 (693)
Q Consensus 658 ---~~~l~~l~~~~~~ 670 (693)
..+|+.|.+.+++
T Consensus 201 ~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred HhCCcCCCEEEccCCC
Confidence 2445555555543
No 23
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.84 E-value=5.6e-09 Score=102.88 Aligned_cols=159 Identities=13% Similarity=0.198 Sum_probs=108.0
Q ss_pred ccccccccccCcccccccc---CCCccccc----C-CCCCCcc---cccCcceeeecCCCCCCcCCCchhhcCCCCCCEE
Q 036977 514 KCYEEMIGFRDIKDLQLSH---FPRLQEIW----H-GQALPVS---FFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYL 582 (693)
Q Consensus 514 ~l~~l~~~~~~l~~l~~~~---~~~L~~~~----~-~~~~~~~---~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L 582 (693)
+++.|.+.++.++.++... +++|+.+. . ...++.. .+++|+.|.+.+|..+.. .++..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCCCCCEE
Confidence 4566666666666655433 34443211 1 2233332 246888899988666654 345678889999999
Q ss_pred EecCCC-----CCccccccc---eeccCCC-Ccccc----cCCCCCcC-EeecCCCcCcccccccccCCCCcCEEecccc
Q 036977 583 EVRNCD-----SLEEVLHLE---ELNAKEE-HIGPL----FPRLSWLR-LIDLPKLKRFYNFTGNIIELPELRYLTIENC 648 (693)
Q Consensus 583 ~l~~c~-----~l~~l~~L~---~L~l~~~-~l~~~----~~~L~~L~-~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C 648 (693)
+++++. .+..+++|+ +|++++| .+..+ +..+++|+ .|++++ +.+..+|......++|++|++++|
T Consensus 111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTTCEEEEEECTTC
T ss_pred eCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCCCCCCEEEcCCC
Confidence 998763 223455666 8999887 76555 77889999 999998 568889988776689999999999
Q ss_pred ccccccccc----c-cccceeeccccccccc
Q 036977 649 PDMETFISN----S-TSVLHMTADNKEAQKL 674 (693)
Q Consensus 649 ~~L~~lp~~----~-~~l~~l~~~~~~~~~~ 674 (693)
+.++.+|.. . .+|+.|.++++.-...
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccC
Confidence 778888653 2 4677777766554443
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.80 E-value=4.9e-08 Score=98.02 Aligned_cols=120 Identities=22% Similarity=0.358 Sum_probs=94.2
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCCCCCcCE
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPRLSWLRL 618 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~ 618 (693)
+++|++|.+.++.-.. .++..+..+++|++|+++++.- +..+++|++|+++++.+..+ +..+++|++
T Consensus 60 l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp CTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccCe--eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE
Confidence 4689999998865322 3455678899999999988752 24678999999999877665 688999999
Q ss_pred eecCCCcCccccccc-ccCCCCcCEEeccccccccccccc----ccccceeecccccccc
Q 036977 619 IDLPKLKRFYNFTGN-IIELPELRYLTIENCPDMETFISN----STSVLHMTADNKEAQK 673 (693)
Q Consensus 619 L~L~~c~~l~~LP~~-i~~L~~L~~L~i~~C~~L~~lp~~----~~~l~~l~~~~~~~~~ 673 (693)
|+|++ +.+..+|.. +..+++|++|++++| .+..+|.. ..+|+.|.++++.-..
T Consensus 138 L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 138 LSLGY-NELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp EECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred EECCC-CcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 99999 568888876 579999999999998 58888763 3567888887775443
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.80 E-value=2e-08 Score=109.07 Aligned_cols=117 Identities=21% Similarity=0.250 Sum_probs=76.1
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-------CCccccccceeccCC-CCcccc----cCCCCCcC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKE-EHIGPL----FPRLSWLR 617 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~-~~l~~~----~~~L~~L~ 617 (693)
+++|++|.+.++.-.. .++..+..+++|++|+++++. .+..+++|++|++++ +.+..+ +..+++|+
T Consensus 122 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 122 LASLNTLELFDNWLTV--IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp CTTCCEEECCSSCCSB--CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred cccCCEEECCCCcCCc--cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 4577777777654222 344557778888888887764 123567788888877 444333 66778888
Q ss_pred EeecCCCcCcccccccccCCCCcCEEeccccccccccc-ccc---cccceeecccccc
Q 036977 618 LIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFI-SNS---TSVLHMTADNKEA 671 (693)
Q Consensus 618 ~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp-~~~---~~l~~l~~~~~~~ 671 (693)
+|+|++ +++..+| .+..+++|++|++++| .+..++ ..+ .+|+.|.+.++.-
T Consensus 200 ~L~L~~-n~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 200 YLNLGM-CNIKDMP-NLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp EEECTT-SCCSSCC-CCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEECCC-Ccccccc-cccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcC
Confidence 888887 4577776 4667888888888887 455653 322 4566666665543
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.80 E-value=2.1e-08 Score=108.48 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=80.0
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-------CCccccccceeccCC-CCcccc----cCCCCCcC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKE-EHIGPL----FPRLSWLR 617 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~-~~l~~~----~~~L~~L~ 617 (693)
+++|+.|.+.++. +.. .++..+..+++|++|+++++. .+..+++|++|++++ +.+..+ +.++++|+
T Consensus 111 l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 111 LANLNTLELFDNR-LTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp CSSCCEEECCSSC-CSS-CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred CccCCEEECCCCc-CCe-eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence 4577888887763 322 344567788888888887774 233577888888887 333332 77788888
Q ss_pred EeecCCCcCcccccccccCCCCcCEEecccccccccccc-cc---cccceeecccccc
Q 036977 618 LIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS-NS---TSVLHMTADNKEA 671 (693)
Q Consensus 618 ~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~-~~---~~l~~l~~~~~~~ 671 (693)
+|+|++ +.+..+| .+..+++|++|++++| ++..+++ .+ .+|+.|.+.++.-
T Consensus 189 ~L~L~~-n~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 189 YLNLAM-CNLREIP-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp EEECTT-SCCSSCC-CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eecCCC-CcCcccc-ccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCce
Confidence 888888 4677877 4778888888888888 5666643 33 4566666665543
No 27
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.80 E-value=8.7e-09 Score=106.24 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=36.4
Q ss_pred CCCCCCEEEecCCCC-----CccccccceeccCCCCcccc---cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecc
Q 036977 575 CLNNLRYLEVRNCDS-----LEEVLHLEELNAKEEHIGPL---FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIE 646 (693)
Q Consensus 575 ~L~~L~~L~l~~c~~-----l~~l~~L~~L~l~~~~l~~~---~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~ 646 (693)
.+++|++|++++|.- ...+++|++|++++|.+..+ +..+++|+.|++++ +.+..+|..+..+++|++|+++
T Consensus 167 ~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp GTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECT
T ss_pred ccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEcc
Confidence 455555555555431 11244555555555444333 44455555555555 3455555555555555555555
Q ss_pred ccc
Q 036977 647 NCP 649 (693)
Q Consensus 647 ~C~ 649 (693)
+++
T Consensus 246 ~N~ 248 (317)
T 3o53_A 246 GNG 248 (317)
T ss_dssp TCC
T ss_pred CCC
Confidence 543
No 28
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.79 E-value=2.8e-08 Score=100.71 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=95.4
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCCCCCcCE
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPRLSWLRL 618 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~ 618 (693)
+++|+.|.+.++..+.. ..+..+..+++|++|+++++.- +..+++|++|+++++.+..+ ++.+++|++
T Consensus 79 l~~L~~L~l~~n~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp CTTCCEEECCSCTTCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCEEeCCCCCCccc-cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 56899999998864543 3467888999999999988752 34678999999999877665 678999999
Q ss_pred eecCCCcCccccccc-ccCCCCcCEEecccccccccc-cccc---cccceeeccccccccc
Q 036977 619 IDLPKLKRFYNFTGN-IIELPELRYLTIENCPDMETF-ISNS---TSVLHMTADNKEAQKL 674 (693)
Q Consensus 619 L~L~~c~~l~~LP~~-i~~L~~L~~L~i~~C~~L~~l-p~~~---~~l~~l~~~~~~~~~~ 674 (693)
|++++ +.+..+|.. +..+++|++|++++|. +..+ |..+ .+|+.|.+.++.-...
T Consensus 158 L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 158 LFLHG-NRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp EECCS-SCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred EECCC-CcccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcC
Confidence 99998 568888875 7789999999999994 6666 4443 5677888877755443
No 29
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=1e-08 Score=106.00 Aligned_cols=183 Identities=11% Similarity=0.051 Sum_probs=109.7
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHh
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDL 234 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 234 (693)
.....++|++..++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+.++.+.......+ +..+..+
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 100 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEF 100 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHHHHH
Confidence 345678999999999999998777667999999999999999999998643211112334443321111110 1111000
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCChhhh-hhh
Q 036977 235 GMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL-CID 311 (693)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~-~~~ 311 (693)
... ..+..+++.++|+||++... ..+.+...+.. ...++++|+||....-. ...
T Consensus 101 ~~~---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~--------~~~~~~~i~~~~~~~~l~~~l 157 (327)
T 1iqp_A 101 ART---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEM--------FSSNVRFILSCNYSSKIIEPI 157 (327)
T ss_dssp HHS---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH--------TTTTEEEEEEESCGGGSCHHH
T ss_pred Hhh---------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh--------cCCCCeEEEEeCCccccCHHH
Confidence 000 00111357899999998652 22222111111 34567888888765421 111
Q ss_pred cCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 312 MNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 312 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
......+.+.+++.++..+++...+... ...-..+....|++.++|.|..
T Consensus 158 ~sr~~~~~~~~l~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~l~~~~~g~~r~ 207 (327)
T 1iqp_A 158 QSRCAIFRFRPLRDEDIAKRLRYIAENE----------------GLELTEEGLQAILYIAEGDMRR 207 (327)
T ss_dssp HHTEEEEECCCCCHHHHHHHHHHHHHTT----------------TCEECHHHHHHHHHHHTTCHHH
T ss_pred HhhCcEEEecCCCHHHHHHHHHHHHHhc----------------CCCCCHHHHHHHHHHCCCCHHH
Confidence 1223488999999999999998876432 1112245667788888888764
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.77 E-value=2.6e-08 Score=101.15 Aligned_cols=153 Identities=15% Similarity=0.103 Sum_probs=112.5
Q ss_pred hcccccccccccCcccccccc---CCCcccccC----CCCCC-cccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEE
Q 036977 512 IQKCYEEMIGFRDIKDLQLSH---FPRLQEIWH----GQALP-VSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLE 583 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~---~~~L~~~~~----~~~~~-~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~ 583 (693)
..+++.|.+.++.+..++... +++|+.+.- ...++ ...+++|+.|.+.++.- . ..|..+..+++|++|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l-~--~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL-Q--SLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCC-S--SCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcC-C--cCchhhccCCCCCEEE
Confidence 356788889988887765443 444542211 11121 14467889998887643 3 4566788999999999
Q ss_pred ecCCC-------CCccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccc-cCCCCcCEEeccccccc
Q 036977 584 VRNCD-------SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNI-IELPELRYLTIENCPDM 651 (693)
Q Consensus 584 l~~c~-------~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i-~~L~~L~~L~i~~C~~L 651 (693)
++++. .+..+++|++|++++|.+..+ +..+++|+.|+|++ +.+..+|.++ ..+++|++|+++++ ++
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l 184 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQEN-SL 184 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCC-cC
Confidence 98874 234678999999999887666 67889999999998 6799999876 57999999999998 58
Q ss_pred ccccccc---cccceeecccc
Q 036977 652 ETFISNS---TSVLHMTADNK 669 (693)
Q Consensus 652 ~~lp~~~---~~l~~l~~~~~ 669 (693)
+.+|... .+|+.|.+.+.
T Consensus 185 ~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 185 YTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCCCTTTTTTCCCSEEECCSC
T ss_pred CccChhhcccccCCeEEeCCC
Confidence 8998865 34667777653
No 31
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.77 E-value=1.3e-08 Score=111.56 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=28.6
Q ss_pred ccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc
Q 036977 593 VLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 593 l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
+++|++|++++|.+..+ ...+++|++|+|++ +.+..+|..+..+++|++|++++| .+..+|.
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~ 231 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEK 231 (487)
T ss_dssp TTTCCEEECTTSCCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECT
T ss_pred CCcccEEecCCCccccccccccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccch
Confidence 34445555544444333 22344555555554 334444444444455555555544 2444444
No 32
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.76 E-value=4.1e-08 Score=100.63 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=103.9
Q ss_pred hhhcccccccccccCcccccc-ccCCCcccccC----CCCCCc-ccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEE
Q 036977 510 STIQKCYEEMIGFRDIKDLQL-SHFPRLQEIWH----GQALPV-SFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLE 583 (693)
Q Consensus 510 ~~~~~l~~l~~~~~~l~~l~~-~~~~~L~~~~~----~~~~~~-~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~ 583 (693)
..+.+++.|.+.+|.+..++. ..+++|+.+.- ...++. ..+++|+.|.+.+|.-.. .+ .+..+++|++|+
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~---~~-~l~~l~~L~~L~ 135 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD---VT-PLAGLSNLQVLY 135 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCC---CG-GGTTCTTCCEEE
T ss_pred hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCC---ch-hhcCCCCCCEEE
Confidence 346778889999888877663 23555552211 112221 225677888877765322 22 377888888888
Q ss_pred ecCCCC-----CccccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc
Q 036977 584 VRNCDS-----LEEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 584 l~~c~~-----l~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
+++|.- +..+++|++|++++|.+..+ +..+++|+.|++++ +.+..+|. +..+++|++|++++| .+..+|+
T Consensus 136 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~ 212 (308)
T 1h6u_A 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD-NKISDISP-LASLPNLIEVHLKNN-QISDVSP 212 (308)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS-SCCCCCGG-GGGCTTCCEEECTTS-CCCBCGG
T ss_pred CCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCC-CccCcChh-hcCCCCCCEEEccCC-ccCcccc
Confidence 877742 33667888888888776655 67888888888887 45777765 678888888888888 4677764
Q ss_pred c--ccccceeeccccccc
Q 036977 657 N--STSVLHMTADNKEAQ 672 (693)
Q Consensus 657 ~--~~~l~~l~~~~~~~~ 672 (693)
. ..+|+.|.+.+++-.
T Consensus 213 l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 213 LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GTTCTTCCEEEEEEEEEE
T ss_pred ccCCCCCCEEEccCCeee
Confidence 2 245666776666543
No 33
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.76 E-value=3e-08 Score=100.78 Aligned_cols=122 Identities=17% Similarity=0.250 Sum_probs=59.9
Q ss_pred hhcccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC--
Q 036977 511 TIQKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-- 588 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-- 588 (693)
.+.+++.|.+.+|.+..++. + ..+++|+.|.+.++.- . . ...+..+++|++|++++|.
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~--l--------------~~l~~L~~L~l~~n~l-~--~-~~~l~~l~~L~~L~L~~n~i~ 125 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP--L--------------ANLKNLGWLFLDENKV-K--D-LSSLKDLKKLKSLSLEHNGIS 125 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG--G--------------TTCTTCCEEECCSSCC-C--C-GGGGTTCTTCCEEECTTSCCC
T ss_pred cCCCCCEEEccCCccCCCcc--c--------------ccCCCCCEEECCCCcC-C--C-ChhhccCCCCCEEECCCCcCC
Confidence 35667777777777765542 1 1133455555544431 1 1 1234555555555555442
Q ss_pred ---CCccccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccccccccc
Q 036977 589 ---SLEEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFI 655 (693)
Q Consensus 589 ---~l~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp 655 (693)
.+..+++|++|++++|.+..+ ++.+++|+.|++++| .+..+|. +..+++|++|++++| .+..+|
T Consensus 126 ~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~ 194 (291)
T 1h6t_A 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLR 194 (291)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCG
T ss_pred CChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCCh
Confidence 122344555555555444433 445555555555552 3444443 445555555555555 344444
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.76 E-value=7.5e-08 Score=99.84 Aligned_cols=160 Identities=14% Similarity=0.149 Sum_probs=97.4
Q ss_pred hhcccccccccccCccccccccCCCccccc----CCCCCCccc---ccCcceeeecCCCCCCcCCCchhhcCC-------
Q 036977 511 TIQKCYEEMIGFRDIKDLQLSHFPRLQEIW----HGQALPVSF---FNNLRELVVDDCTNMSSAIPANLLRCL------- 576 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~~l~~~~~~~L~~~~----~~~~~~~~~---~~~L~~L~i~~c~~~~~~~~~~~l~~L------- 576 (693)
.+.+++.|.+.++.+..++...+++|+.+. ....++... +++|+.|.+.++.-......+..+..+
T Consensus 100 ~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l 179 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179 (332)
T ss_dssp TCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBC
T ss_pred CcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEEC
Confidence 456778888888888877776666666332 122444432 456777777665432111223334433
Q ss_pred -------------CCCCEEEecCCC-------CCccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccc
Q 036977 577 -------------NNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTG 632 (693)
Q Consensus 577 -------------~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~ 632 (693)
++|++|+++++. .+..+++|++|++++|.+..+ +..+++|+.|++++ +.+..+|.
T Consensus 180 ~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~ 258 (332)
T 2ft3_A 180 SEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN-NKLSRVPA 258 (332)
T ss_dssp CSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS-SCCCBCCT
T ss_pred cCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC-CcCeecCh
Confidence 344444444432 123456677777777665544 56677888888887 45778888
Q ss_pred cccCCCCcCEEeccccccccccccc----------ccccceeeccccccc
Q 036977 633 NIIELPELRYLTIENCPDMETFISN----------STSVLHMTADNKEAQ 672 (693)
Q Consensus 633 ~i~~L~~L~~L~i~~C~~L~~lp~~----------~~~l~~l~~~~~~~~ 672 (693)
.+..+++|++|+++++ ++..+|.. ..++..|.+.+++-.
T Consensus 259 ~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCccc
Confidence 8888888888888887 46666542 234667777776643
No 35
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.75 E-value=2.6e-08 Score=94.83 Aligned_cols=135 Identities=13% Similarity=0.185 Sum_probs=101.8
Q ss_pred cccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-----CCccccccceeccCCCCccc----ccCCCCCcC
Q 036977 547 VSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-----SLEEVLHLEELNAKEEHIGP----LFPRLSWLR 617 (693)
Q Consensus 547 ~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-----~l~~l~~L~~L~l~~~~l~~----~~~~L~~L~ 617 (693)
...+++|+.|.+.++.-. ..+ .+..+++|++|++++|. .+..+++|++|++++|.+.. .++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~---~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT---DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS---CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc---ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 344789999999986532 334 68899999999999984 22367899999999988765 288999999
Q ss_pred EeecCCCcCcc-cccccccCCCCcCEEeccccccccccccc--ccccceeeccccccccccchhhhhhhcchhhh
Q 036977 618 LIDLPKLKRFY-NFTGNIIELPELRYLTIENCPDMETFISN--STSVLHMTADNKEAQKLKSEENILVANQIQHL 689 (693)
Q Consensus 618 ~L~L~~c~~l~-~LP~~i~~L~~L~~L~i~~C~~L~~lp~~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (693)
+|++++|. +. ..|..+..+++|++|++++|..+..+|.. ..+|+.|.+.+|.-.... .+..+..|+++
T Consensus 116 ~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L 186 (197)
T 4ezg_A 116 LLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQL 186 (197)
T ss_dssp EEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEE
T ss_pred EEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH---HhccCCCCCEE
Confidence 99999955 55 46788899999999999999768888742 356888888887655433 23333445443
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.74 E-value=4.5e-08 Score=106.25 Aligned_cols=156 Identities=17% Similarity=0.260 Sum_probs=107.5
Q ss_pred hcccccccccccCcccccccc---CCCccccc----CCCCCCcc---cccCcceeeecCCCCCCcCCCchhhcCCCCCCE
Q 036977 512 IQKCYEEMIGFRDIKDLQLSH---FPRLQEIW----HGQALPVS---FFNNLRELVVDDCTNMSSAIPANLLRCLNNLRY 581 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~---~~~L~~~~----~~~~~~~~---~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~ 581 (693)
+.+++.|.+.+|.+..++... +++|+.+. ....++.. .+++|+.|.+.+|..+.. .++..+..+++|++
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY-ISEGAFEGLFNLKY 200 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-ECTTTTTTCTTCCE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc-cChhhccCCCCCCE
Confidence 445566666666665555433 33333211 11122222 246888899988877764 34557888999999
Q ss_pred EEecCCC-----CCccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccc-cccccCCCCcCEEeccccccc
Q 036977 582 LEVRNCD-----SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNF-TGNIIELPELRYLTIENCPDM 651 (693)
Q Consensus 582 L~l~~c~-----~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~L-P~~i~~L~~L~~L~i~~C~~L 651 (693)
|++++|. .+..+++|++|++++|.+..+ +.++++|+.|+|++ +.+..+ |..+..+++|++|+++++ ++
T Consensus 201 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l 278 (452)
T 3zyi_A 201 LNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NL 278 (452)
T ss_dssp EECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred EECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cC
Confidence 9998874 334677899999999887655 88899999999998 456666 556778999999999998 68
Q ss_pred cccccc----ccccceeeccccc
Q 036977 652 ETFISN----STSVLHMTADNKE 670 (693)
Q Consensus 652 ~~lp~~----~~~l~~l~~~~~~ 670 (693)
..+|.. ..+|+.|.+.+++
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccChHHhccccCCCEEEccCCC
Confidence 888763 3567777776643
No 37
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.74 E-value=3.7e-08 Score=110.32 Aligned_cols=138 Identities=16% Similarity=0.211 Sum_probs=64.4
Q ss_pred hhhcccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-
Q 036977 510 STIQKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD- 588 (693)
Q Consensus 510 ~~~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~- 588 (693)
..+.+++.|.+.+|.+..++. ...+++|+.|.+.+|.- . . ++.+..|++|+.|++++|.
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~~~----------------l~~l~~L~~L~Ls~N~l-~--~-l~~l~~l~~L~~L~Ls~N~l 121 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDIKP----------------LTNLKNLGWLFLDENKI-K--D-LSSLKDLKKLKSLSLEHNGI 121 (605)
T ss_dssp GGCTTCCEEECTTSCCCCCGG----------------GGGCTTCCEEECCSSCC-C--C-CTTSTTCTTCCEEECTTSCC
T ss_pred ccCCCCCEEEeeCCCCCCChh----------------hccCCCCCEEECcCCCC-C--C-ChhhccCCCCCEEEecCCCC
Confidence 345666777777776655442 11134455555544421 1 1 1234455555555554443
Q ss_pred ----CCccccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccccccccccc--ccc
Q 036977 589 ----SLEEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISN--STS 660 (693)
Q Consensus 589 ----~l~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~--~~~ 660 (693)
.+..+++|+.|++++|.+..+ ++.+++|+.|+|++| .+..+|. +..+++|++|++++| .+..+|.. ..+
T Consensus 122 ~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~ 198 (605)
T 1m9s_A 122 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKN 198 (605)
T ss_dssp CCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTT
T ss_pred CCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC-CCCCChHHccCCC
Confidence 122344555555555444433 445555555555542 3444433 445555555555555 34444321 233
Q ss_pred cceeeccccc
Q 036977 661 VLHMTADNKE 670 (693)
Q Consensus 661 l~~l~~~~~~ 670 (693)
|..|.+.+|+
T Consensus 199 L~~L~L~~N~ 208 (605)
T 1m9s_A 199 LDVLELFSQE 208 (605)
T ss_dssp CSEEECCSEE
T ss_pred CCEEEccCCc
Confidence 4444444443
No 38
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.73 E-value=5.8e-08 Score=94.22 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=33.5
Q ss_pred chhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCccccccc-ccCC
Q 036977 570 ANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGN-IIEL 637 (693)
Q Consensus 570 ~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~-i~~L 637 (693)
+..+..+++|++|+++++.- +..+++|++|++++|.+..+ +..+++|++|+|++ +.+..+|.. +..+
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l 151 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPL 151 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTC
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCC
Confidence 34444455555555544421 12334444444444443333 34444444444444 334444432 3344
Q ss_pred CCcCEEeccc
Q 036977 638 PELRYLTIEN 647 (693)
Q Consensus 638 ~~L~~L~i~~ 647 (693)
++|++|++.+
T Consensus 152 ~~L~~L~L~~ 161 (220)
T 2v9t_B 152 RAIQTMHLAQ 161 (220)
T ss_dssp TTCCEEECCS
T ss_pred CCCCEEEeCC
Confidence 4444444444
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.73 E-value=7.2e-08 Score=102.43 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=46.5
Q ss_pred cccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccccc---ccccee
Q 036977 592 EVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISNS---TSVLHM 664 (693)
Q Consensus 592 ~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~~---~~l~~l 664 (693)
.+++|++|++++|.+... +..+++|+.|+|++ +.+..+|.....+++|++|++++| ++..+|... .+|+.|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENL 323 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEE
Confidence 345666666666555433 56666777777766 456666666666677777777766 456666533 445555
Q ss_pred eccccc
Q 036977 665 TADNKE 670 (693)
Q Consensus 665 ~~~~~~ 670 (693)
.+.++.
T Consensus 324 ~L~~N~ 329 (390)
T 3o6n_A 324 YLDHNS 329 (390)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 555544
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.72 E-value=5.5e-08 Score=105.15 Aligned_cols=155 Identities=17% Similarity=0.317 Sum_probs=104.7
Q ss_pred hcccccccccccCcccccccc---CCCcccccC----CCCCCcc---cccCcceeeecCCCCCCcCCCchhhcCCCCCCE
Q 036977 512 IQKCYEEMIGFRDIKDLQLSH---FPRLQEIWH----GQALPVS---FFNNLRELVVDDCTNMSSAIPANLLRCLNNLRY 581 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~---~~~L~~~~~----~~~~~~~---~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~ 581 (693)
+.+++.|.+.+|.+..++... +++|+.+.- ...++.. .+++|+.|.+.+|..+.. .++..+..+++|++
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLSNLRY 189 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-ECTTTTTTCSSCCE
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-eCcchhhcccccCe
Confidence 445666666666666555432 333332111 1122221 246888888888777654 34457888999999
Q ss_pred EEecCCC-----CCccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCccccc-ccccCCCCcCEEeccccccc
Q 036977 582 LEVRNCD-----SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFT-GNIIELPELRYLTIENCPDM 651 (693)
Q Consensus 582 L~l~~c~-----~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP-~~i~~L~~L~~L~i~~C~~L 651 (693)
|++++|. .+..+++|++|++++|.+..+ +..+++|+.|+|++ +.+..++ ..+..+++|++|+++++ ++
T Consensus 190 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l 267 (440)
T 3zyj_A 190 LNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NL 267 (440)
T ss_dssp EECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CC
T ss_pred ecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CC
Confidence 9998874 334567899999998877655 78889999999998 5577664 45678999999999998 68
Q ss_pred cccccc----ccccceeecccc
Q 036977 652 ETFISN----STSVLHMTADNK 669 (693)
Q Consensus 652 ~~lp~~----~~~l~~l~~~~~ 669 (693)
..+|.. ..+|+.|.+++.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSS
T ss_pred CccChhHhccccCCCEEEcCCC
Confidence 888763 356777777663
No 41
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.72 E-value=1.2e-07 Score=91.14 Aligned_cols=96 Identities=20% Similarity=0.415 Sum_probs=53.6
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCCCCCcCE
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPRLSWLRL 618 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~ 618 (693)
+++|+.|.+.++. +.. .++..+..+++|++|+++++.- +..+++|++|++++|.+..+ +..+++|++
T Consensus 51 l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 51 LTSLTQLYLGGNK-LQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp CTTCSEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCcEEECCCCc-cCc-cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 3456666666543 221 2334455666666666665531 23455666666666555444 455666666
Q ss_pred eecCCCcCccccccc-ccCCCCcCEEecccc
Q 036977 619 IDLPKLKRFYNFTGN-IIELPELRYLTIENC 648 (693)
Q Consensus 619 L~L~~c~~l~~LP~~-i~~L~~L~~L~i~~C 648 (693)
|++++ +.+..+|.. +..+++|++|++.++
T Consensus 129 L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 129 LRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EECCC-CccceeCHHHhccCCCccEEEecCC
Confidence 66666 345555554 355666666666664
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.72 E-value=6.3e-08 Score=109.03 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=40.3
Q ss_pred cccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccccc---ccccee
Q 036977 592 EVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISNS---TSVLHM 664 (693)
Q Consensus 592 ~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~~---~~l~~l 664 (693)
.+++|++|++++|.+... ++.+++|+.|+|++ +.+..+|.....+++|++|++++| .+..+|... .+|..|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEE
Confidence 345555566655554333 55566666666665 345555655555666666666665 344555432 334444
Q ss_pred ecccc
Q 036977 665 TADNK 669 (693)
Q Consensus 665 ~~~~~ 669 (693)
.+++|
T Consensus 330 ~L~~N 334 (597)
T 3oja_B 330 YLDHN 334 (597)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 44443
No 43
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.71 E-value=1.9e-08 Score=98.99 Aligned_cols=154 Identities=10% Similarity=0.053 Sum_probs=107.6
Q ss_pred hcccccccccccC-ccccccc---cCCCcccc-----cCCCCCCccc---ccCcceeeecCCCCCCcCCCchhhcCCCCC
Q 036977 512 IQKCYEEMIGFRD-IKDLQLS---HFPRLQEI-----WHGQALPVSF---FNNLRELVVDDCTNMSSAIPANLLRCLNNL 579 (693)
Q Consensus 512 ~~~l~~l~~~~~~-l~~l~~~---~~~~L~~~-----~~~~~~~~~~---~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L 579 (693)
+.+++.|.+.++. +..++.. .+++|+.+ .....++... +++|+.|.+.++.-.. .|. +..+++|
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~---lp~-~~~l~~L 129 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM---FPD-LTKVYST 129 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS---CCC-CTTCCBC
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc---ccc-ccccccc
Confidence 4456666676665 6555542 24455422 2223344332 5688999998875322 333 7778888
Q ss_pred C---EEEecCCCC--------Cccccccc-eeccCCCCcccc---cCCCCCcCEeecCCCcCccccccc-ccCC-CCcCE
Q 036977 580 R---YLEVRNCDS--------LEEVLHLE-ELNAKEEHIGPL---FPRLSWLRLIDLPKLKRFYNFTGN-IIEL-PELRY 642 (693)
Q Consensus 580 ~---~L~l~~c~~--------l~~l~~L~-~L~l~~~~l~~~---~~~L~~L~~L~L~~c~~l~~LP~~-i~~L-~~L~~ 642 (693)
+ +|++++++. +..+++|+ +|++++|.+..+ ....++|+.|+++++..+..+|.. +..+ ++|++
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence 8 999999843 34678899 999999887655 223389999999997679999765 5688 99999
Q ss_pred Eeccccccccccccc-ccccceeeccccc
Q 036977 643 LTIENCPDMETFISN-STSVLHMTADNKE 670 (693)
Q Consensus 643 L~i~~C~~L~~lp~~-~~~l~~l~~~~~~ 670 (693)
|+++++ ++..+|.. +.+++.|.+.++.
T Consensus 210 L~l~~N-~l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 210 LDVSQT-SVTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp EECTTC-CCCCCCCTTCTTCSEEECTTC-
T ss_pred EECCCC-ccccCChhHhccCceeeccCcc
Confidence 999997 68899875 6788888887664
No 44
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.71 E-value=6e-08 Score=98.44 Aligned_cols=137 Identities=20% Similarity=0.253 Sum_probs=104.2
Q ss_pred hhhcccccccccccCccccccc-cCCCccccc----CCCCCCcc--cccCcceeeecCCCCCCcCCCchhhcCCCCCCEE
Q 036977 510 STIQKCYEEMIGFRDIKDLQLS-HFPRLQEIW----HGQALPVS--FFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYL 582 (693)
Q Consensus 510 ~~~~~l~~l~~~~~~l~~l~~~-~~~~L~~~~----~~~~~~~~--~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L 582 (693)
..+.+++.|.+.++.+..++.. .+++|+.+. ....+|.. .+++|+.|.+.++.-.. .++..+..+++|++|
T Consensus 52 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPLGALRGLGELQEL 129 (290)
T ss_dssp TTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC--CCSSTTTTCTTCCEE
T ss_pred hcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcc--cCHHHHcCCCCCCEE
Confidence 3467788999999998776653 356665322 22344442 35688889888764332 345778999999999
Q ss_pred EecCCCC-------CccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccc
Q 036977 583 EVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCP 649 (693)
Q Consensus 583 ~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~ 649 (693)
+++++.- +..+++|++|++++|.+..+ +..+++|++|+|++ +.+..+|.++..+++|++|++.+.|
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 9988742 23678899999999887766 67899999999998 6799999999999999999999754
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.71 E-value=8.3e-08 Score=99.40 Aligned_cols=114 Identities=16% Similarity=0.185 Sum_probs=69.1
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-------CCccccccceeccCCCCcccc----cCCCCCcCEe
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLI 619 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L 619 (693)
++|+.|.+.++.-. ..|..+ .++|++|+++++. .+..+++|++|++++|.+... +..+++|+.|
T Consensus 171 ~~L~~L~l~~n~l~---~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 171 KKLSYIRIADTNIT---TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp TTCCEEECCSSCCC---SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred CCcCEEECCCCccc---cCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence 45555555554321 122222 2566666666653 123556777777777666544 5667778888
Q ss_pred ecCCCcCcccccccccCCCCcCEEeccccccccccccc----------ccccceeecccccc
Q 036977 620 DLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISN----------STSVLHMTADNKEA 671 (693)
Q Consensus 620 ~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~----------~~~l~~l~~~~~~~ 671 (693)
+|++| .+..+|.++..+++|++|++++| .+..+|.. ..++..|.+.+.+-
T Consensus 246 ~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 246 HLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp ECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 88774 57777877778888888888877 46666542 13455666665554
No 46
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.70 E-value=1e-07 Score=94.45 Aligned_cols=127 Identities=14% Similarity=0.282 Sum_probs=100.3
Q ss_pred CCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCC
Q 036977 544 ALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPR 612 (693)
Q Consensus 544 ~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~ 612 (693)
.+|....++++.|.+.++.-.. .++..+..+++|++|+++++.- +..+++|++|++++|.+..+ +..
T Consensus 28 ~~p~~~~~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 105 (251)
T 3m19_A 28 SVPSGIPADTEKLDLQSTGLAT--LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH 105 (251)
T ss_dssp SCCSCCCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccCCCCCCCCCEEEccCCCcCc--cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc
Confidence 3444445689999999876443 4456789999999999988752 34678999999999887765 688
Q ss_pred CCCcCEeecCCCcCcccccccc-cCCCCcCEEeccccccccccccc-c---cccceeeccccccccc
Q 036977 613 LSWLRLIDLPKLKRFYNFTGNI-IELPELRYLTIENCPDMETFISN-S---TSVLHMTADNKEAQKL 674 (693)
Q Consensus 613 L~~L~~L~L~~c~~l~~LP~~i-~~L~~L~~L~i~~C~~L~~lp~~-~---~~l~~l~~~~~~~~~~ 674 (693)
+++|++|+|++ +.+..+|... ..+++|++|+++++ ++..+|.. + .+|+.|.+.++.-...
T Consensus 106 l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 106 LTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999999999 6799998875 78999999999998 68888873 3 5677888777654433
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.70 E-value=5.2e-08 Score=100.09 Aligned_cols=119 Identities=11% Similarity=0.135 Sum_probs=66.6
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCC-----------ccccccceeccCCCCcccc-------cCC
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSL-----------EEVLHLEELNAKEEHIGPL-------FPR 612 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l-----------~~l~~L~~L~l~~~~l~~~-------~~~ 612 (693)
++|++|.+.++.-.. .++..+..+++|++|+++++.-. ..+++|++|++++|.+..+ +..
T Consensus 149 ~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 226 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLN--FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226 (312)
T ss_dssp TTCCEEEEESCSCCC--CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred CCCcEEEeeCCCCcc--chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc
Confidence 566666666654322 33455666666666666666411 3456666666666665522 345
Q ss_pred CCCcCEeecCCCcCccccc--ccccCCCCcCEEecccccccccccccc-cccceeecccccccc
Q 036977 613 LSWLRLIDLPKLKRFYNFT--GNIIELPELRYLTIENCPDMETFISNS-TSVLHMTADNKEAQK 673 (693)
Q Consensus 613 L~~L~~L~L~~c~~l~~LP--~~i~~L~~L~~L~i~~C~~L~~lp~~~-~~l~~l~~~~~~~~~ 673 (693)
+++|++|++++ +.+...+ .....+++|++|++++| ++..+|... .+|+.|.++++.-..
T Consensus 227 l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 227 RVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLSVLDLSYNRLDR 288 (312)
T ss_dssp TCCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCCSEEEEEECCSSCCCS
T ss_pred CCCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhccCCceEEECCCCCCCC
Confidence 56666666666 3455433 23345666666666666 355666544 356666665554433
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.70 E-value=7.3e-08 Score=97.54 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=109.8
Q ss_pred hcccccccccccCcccccccc---CCCcccccC-----CCCCCcc---cccCcceeeecCCCCCCcCCCchhhcCCCCCC
Q 036977 512 IQKCYEEMIGFRDIKDLQLSH---FPRLQEIWH-----GQALPVS---FFNNLRELVVDDCTNMSSAIPANLLRCLNNLR 580 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~---~~~L~~~~~-----~~~~~~~---~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~ 580 (693)
+.+++.|.+.++.+..+.... +++|+.+.- ...++.. .+++|+.|.+.++.-.. .++..+..+++|+
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE--LGPGLFRGLAALQ 132 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE--ECHhHhhCCcCCC
Confidence 345666666666665543222 344442111 1223222 25689999998876433 4467788999999
Q ss_pred EEEecCCCC-------CccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccc-cccccCCCCcCEEecccc
Q 036977 581 YLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNF-TGNIIELPELRYLTIENC 648 (693)
Q Consensus 581 ~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~L-P~~i~~L~~L~~L~i~~C 648 (693)
+|+++++.- +..+++|++|++++|.+..+ +..+++|+.|+++++ .+..+ |..+..+++|++|++++|
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCC
Confidence 999988752 34678999999999887655 778999999999995 46666 788899999999999999
Q ss_pred ccccccccc----ccccceeecccccc
Q 036977 649 PDMETFISN----STSVLHMTADNKEA 671 (693)
Q Consensus 649 ~~L~~lp~~----~~~l~~l~~~~~~~ 671 (693)
++..+|.. ..+|+.|.+.+++-
T Consensus 212 -~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 212 -NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp -CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred -cCCcCCHHHcccCcccCEEeccCCCc
Confidence 67888753 35677788877543
No 49
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.70 E-value=1.3e-07 Score=97.42 Aligned_cols=180 Identities=11% Similarity=0.025 Sum_probs=110.5
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh---HHHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP---QKIQDKL 230 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~---~~~~~~i 230 (693)
|.....++|++..++.+..++..+..+.+.++|++|+|||++|+.+++.......-...+.++.+..... ......+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHH
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHH
Confidence 3445678999999999999987766656999999999999999999988632211112334454432221 1111111
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCChhhh
Q 036977 231 ASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL 308 (693)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~ 308 (693)
.... + +..+++.++|+||++... ..+.+...+.. ...++++|+||....-.
T Consensus 93 ~~~~--~-----------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~--------~~~~~~~i~~~~~~~~l 145 (319)
T 2chq_A 93 ARTA--P-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEM--------YSKSCRFILSCNYVSRI 145 (319)
T ss_dssp HHSC--C-----------------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSS--------SSSSEEEEEEESCGGGS
T ss_pred HhcC--C-----------------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHh--------cCCCCeEEEEeCChhhc
Confidence 1000 0 111357899999998652 22333222222 34567788887665421
Q ss_pred -hhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 309 -CIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 309 -~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
.........+.+.+++.++..+++...+... ...-..+....+++.++|.+.
T Consensus 146 ~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~----------------~~~i~~~~l~~l~~~~~G~~r 198 (319)
T 2chq_A 146 IEPIQSRCAVFRFKPVPKEAMKKRLLEICEKE----------------GVKITEDGLEALIYISGGDFR 198 (319)
T ss_dssp CHHHHTTCEEEECCCCCHHHHHHHHHHHHHTT----------------CCCBCHHHHHHHHHTTTTCHH
T ss_pred chHHHhhCeEEEecCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCCCHH
Confidence 1112334589999999999999988776432 112224566778888888775
No 50
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.69 E-value=3e-08 Score=91.78 Aligned_cols=94 Identities=24% Similarity=0.293 Sum_probs=42.0
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCc-------cccccceeccCCCCcccc-----cCCCCCcC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLE-------EVLHLEELNAKEEHIGPL-----FPRLSWLR 617 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~-------~l~~L~~L~l~~~~l~~~-----~~~L~~L~ 617 (693)
+++|+.|.+.+|. +.. . ..+..+++|++|++++|.--. .+++|++|++++|.+..+ +..+++|+
T Consensus 48 l~~L~~L~l~~n~-l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 48 FVNLEFLSLINVG-LIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGCCEEEEESSC-CCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred CCCCCEEeCcCCC-CCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 3455555555543 221 1 344455555555555543211 244455555544433321 34444455
Q ss_pred EeecCCCcCcccccc----cccCCCCcCEEecccc
Q 036977 618 LIDLPKLKRFYNFTG----NIIELPELRYLTIENC 648 (693)
Q Consensus 618 ~L~L~~c~~l~~LP~----~i~~L~~L~~L~i~~C 648 (693)
+|++++ +.+..+|. .+..+++|++|++++|
T Consensus 124 ~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 124 SLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 555544 23444443 3344455555555544
No 51
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.67 E-value=6.8e-08 Score=89.30 Aligned_cols=121 Identities=21% Similarity=0.311 Sum_probs=94.4
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-----CCccccccceeccCCCCcccc----cCCCCCcCEee
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-----SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLID 620 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-----~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~ 620 (693)
+++|+.|.+.+|.-.. ...|..+..+++|++|++++|. .+..+++|++|++++|.+... +..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~-~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBT-TBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCCh-hhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 4689999999986331 1345667889999999999885 344688999999999877663 56699999999
Q ss_pred cCCCcCccccc--ccccCCCCcCEEecccccccccccc----c---ccccceeecccccccc
Q 036977 621 LPKLKRFYNFT--GNIIELPELRYLTIENCPDMETFIS----N---STSVLHMTADNKEAQK 673 (693)
Q Consensus 621 L~~c~~l~~LP--~~i~~L~~L~~L~i~~C~~L~~lp~----~---~~~l~~l~~~~~~~~~ 673 (693)
+++| .+..+| ..+..+++|++|++++| .+..+|. . ..+|+.|.+.+|....
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9995 688887 68889999999999999 4778776 3 3556667766665443
No 52
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.67 E-value=8.3e-08 Score=93.11 Aligned_cols=121 Identities=18% Similarity=0.294 Sum_probs=93.7
Q ss_pred CCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-------CCccccccceeccCCCCcccc----cCCC
Q 036977 545 LPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIGPL----FPRL 613 (693)
Q Consensus 545 ~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~~----~~~L 613 (693)
+|....++++.|.+.++.-.. .++..+..+++|++|+++++. .+..+++|++|++++|.+..+ +..+
T Consensus 26 iP~~l~~~l~~L~l~~n~i~~--i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 26 IPTNLPETITEIRLEQNTIKV--IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp CCSSCCTTCCEEECCSSCCCE--ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCccCcCCCEEECCCCcCCC--cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCC
Confidence 444445689999998864322 345678899999999998874 234778999999999887766 6789
Q ss_pred CCcCEeecCCCcCcccc-cccccCCCCcCEEeccccccccccccc-c---cccceeecccc
Q 036977 614 SWLRLIDLPKLKRFYNF-TGNIIELPELRYLTIENCPDMETFISN-S---TSVLHMTADNK 669 (693)
Q Consensus 614 ~~L~~L~L~~c~~l~~L-P~~i~~L~~L~~L~i~~C~~L~~lp~~-~---~~l~~l~~~~~ 669 (693)
++|++|+|++ +.+..+ |..+..+++|++|+++++ ++..+|.. + .+|..|.+.+.
T Consensus 104 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 104 FSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 9999999999 668877 456789999999999998 58888763 3 45677777663
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.66 E-value=1.7e-07 Score=97.00 Aligned_cols=160 Identities=16% Similarity=0.191 Sum_probs=112.7
Q ss_pred hhcccccccccccCccccccccCCCcccccC----CCCCCccc---ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEE
Q 036977 511 TIQKCYEEMIGFRDIKDLQLSHFPRLQEIWH----GQALPVSF---FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLE 583 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~----~~~~~~~~---~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~ 583 (693)
.+.+++.|.+.++.+..++...+++|+.+.- ...++... +++|+.|.+.++.-......+..+..+++|++|+
T Consensus 98 ~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp TCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 4567888888888888777776666663322 12333322 4577777777665332223456778888999999
Q ss_pred ecCCCCCcc-----ccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccc-cccCCCCcCEEeccccccccc
Q 036977 584 VRNCDSLEE-----VLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTG-NIIELPELRYLTIENCPDMET 653 (693)
Q Consensus 584 l~~c~~l~~-----l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~-~i~~L~~L~~L~i~~C~~L~~ 653 (693)
++++. +.. .++|++|++++|.+... +..+++|+.|++++ +.+..+|. .+..+++|++|++++| ++..
T Consensus 178 l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 254 (330)
T 1xku_A 178 IADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNN-KLVK 254 (330)
T ss_dssp CCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSS-CCSS
T ss_pred CCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCC-cCcc
Confidence 88774 222 36799999998877654 78899999999998 45777765 6789999999999999 6888
Q ss_pred ccccc---cccceeecccccccc
Q 036977 654 FISNS---TSVLHMTADNKEAQK 673 (693)
Q Consensus 654 lp~~~---~~l~~l~~~~~~~~~ 673 (693)
+|... .+|+.|.+.++.-..
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCC
T ss_pred CChhhccCCCcCEEECCCCcCCc
Confidence 88765 456677777665443
No 54
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.65 E-value=1.1e-07 Score=92.23 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=52.7
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCCCCCcCE
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPRLSWLRL 618 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~ 618 (693)
+++|+.|.+.++.-.. .++..+..+++|++|+++++.- +..+++|++|++++|.+..+ +..+++|++
T Consensus 56 l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 56 LPQLRKINFSNNKITD--IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp CTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred CCCCCEEECCCCcCCE--ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 3455666655543211 2334566666666666655531 22455666666666555443 555666666
Q ss_pred eecCCCcCcccc-cccccCCCCcCEEeccccc
Q 036977 619 IDLPKLKRFYNF-TGNIIELPELRYLTIENCP 649 (693)
Q Consensus 619 L~L~~c~~l~~L-P~~i~~L~~L~~L~i~~C~ 649 (693)
|+|++ +.+..+ |..+..+++|++|++++++
T Consensus 134 L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 134 LSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 66665 445555 4455566666666666543
No 55
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.65 E-value=1.5e-07 Score=90.38 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=71.8
Q ss_pred CcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCCCC
Q 036977 546 PVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPRLS 614 (693)
Q Consensus 546 ~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~L~ 614 (693)
|...+++|++|.+.++.-.. .++..+..+++|++|+++++.- +..+++|++|++++|.+..+ +..++
T Consensus 23 p~~~~~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 100 (208)
T 2o6s_A 23 PTGIPAQTTYLDLETNSLKS--LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100 (208)
T ss_dssp CSCCCTTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCCCCcEEEcCCCccCc--CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence 33334567777776654221 2344566677777777766531 23456677777777665544 45667
Q ss_pred CcCEeecCCCcCccccccc-ccCCCCcCEEeccccccccccccc----ccccceeeccccc
Q 036977 615 WLRLIDLPKLKRFYNFTGN-IIELPELRYLTIENCPDMETFISN----STSVLHMTADNKE 670 (693)
Q Consensus 615 ~L~~L~L~~c~~l~~LP~~-i~~L~~L~~L~i~~C~~L~~lp~~----~~~l~~l~~~~~~ 670 (693)
+|++|++++ +.+..+|.. +..+++|++|+++++ ++..+|.. ..+|+.|.+.+++
T Consensus 101 ~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 101 QLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 777777776 456666654 356777777777776 45666543 2456666665544
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.65 E-value=1.7e-07 Score=96.05 Aligned_cols=142 Identities=18% Similarity=0.212 Sum_probs=102.7
Q ss_pred hhhcccccccccccCccccccc-cCCCcccccC----CCCCC-cccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEE
Q 036977 510 STIQKCYEEMIGFRDIKDLQLS-HFPRLQEIWH----GQALP-VSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLE 583 (693)
Q Consensus 510 ~~~~~l~~l~~~~~~l~~l~~~-~~~~L~~~~~----~~~~~-~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~ 583 (693)
..+.+++.|.+.+|.+..++.- .+++|+.+.- ...++ -..+++|+.|.+.+|.-.. .+. +..+++|++|+
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~---~~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 82 KNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN---ISP-LAGLTNLQYLS 157 (308)
T ss_dssp TTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCC---CGG-GGGCTTCCEEE
T ss_pred ccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCc---Ccc-ccCCCCccEEE
Confidence 3466788899999988776532 2556653221 12222 2335788888888875322 222 88899999999
Q ss_pred ecCCC-----CCccccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc
Q 036977 584 VRNCD-----SLEEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 584 l~~c~-----~l~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
+++|. .+..+++|++|++++|.+..+ +..+++|++|++++ +.+..+|. +..+++|++|++++|+ +...|.
T Consensus 158 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKN-NQISDVSP-LANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTT-SCCCBCGG-GTTCTTCCEEEEEEEE-EECCCE
T ss_pred ccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccC-CccCcccc-ccCCCCCCEEEccCCe-eecCCe
Confidence 98884 234678899999999887766 78899999999998 46888874 7899999999999985 666665
Q ss_pred cc
Q 036977 657 NS 658 (693)
Q Consensus 657 ~~ 658 (693)
..
T Consensus 235 ~~ 236 (308)
T 1h6u_A 235 FY 236 (308)
T ss_dssp EC
T ss_pred ee
Confidence 43
No 57
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.65 E-value=7.7e-08 Score=102.18 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=95.0
Q ss_pred CcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc---cCCCCC
Q 036977 546 PVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL---FPRLSW 615 (693)
Q Consensus 546 ~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~---~~~L~~ 615 (693)
|...+++|+.|.+.++.-.. ...+..+++|++|+++++.- +..+++|++|++++|.+..+ +..+++
T Consensus 221 ~~~~~~~L~~L~l~~n~l~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 296 (390)
T 3o6n_A 221 RGPVNVELTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 296 (390)
T ss_dssp ECCCCSSCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTT
T ss_pred cccccccccEEECCCCCCcc----cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCC
Confidence 34445688888888875332 35788999999999998852 23678999999999887665 678999
Q ss_pred cCEeecCCCcCcccccccccCCCCcCEEecccccccccccc-cccccceeeccccc
Q 036977 616 LRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS-NSTSVLHMTADNKE 670 (693)
Q Consensus 616 L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~-~~~~l~~l~~~~~~ 670 (693)
|++|+|++| .+..+|..+..+++|++|++++|+ +..+|. ...+|+.|.+.+++
T Consensus 297 L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 297 LKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred CCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCCC
Confidence 999999995 688999999999999999999995 777764 34678888887754
No 58
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.63 E-value=2.5e-07 Score=97.52 Aligned_cols=176 Identities=12% Similarity=0.106 Sum_probs=106.5
Q ss_pred CCccccchHHHHHHHHHHHhcCC-ceEEEEEecCCCcHHHHHHHHHHHhhccCCCC-------------------EEEEE
Q 036977 156 DNEAFDSRMKVFQDVMEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLID-------------------KVVMA 215 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------------------~~~wv 215 (693)
....++||+..++.+...+..++ ...+.|+|++|+||||+|+.+++.......+. ..+.+
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEE
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEe
Confidence 34568999999999999987654 46788999999999999999998865431110 01111
Q ss_pred EecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--CccccCCCCCCcccccc
Q 036977 216 EVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLK----QEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDR 289 (693)
Q Consensus 216 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~ 289 (693)
..+..... .... .+.+.+. .+++.++|+||++... ..+.+...+..
T Consensus 94 ~~~~~~~~------------------~~~~----~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~------ 145 (373)
T 1jr3_A 94 DAASRTKV------------------EDTR----DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE------ 145 (373)
T ss_dssp ETTCSCCS------------------SCHH----HHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS------
T ss_pred cccccCCH------------------HHHH----HHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc------
Confidence 11110000 1111 1222221 1357899999997642 22222111111
Q ss_pred cccCCCeEEEEecCChhh-hhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHh
Q 036977 290 EDDQRRCTIILTSRSRDL-LCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVF 368 (693)
Q Consensus 290 ~~~~~~~~IivTtR~~~v-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 368 (693)
...+..+|++|....- ..........+.+.+++.++..+++.+.+... ...-..+....|+
T Consensus 146 --~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~----------------~~~~~~~a~~~l~ 207 (373)
T 1jr3_A 146 --PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE----------------HIAHEPRALQLLA 207 (373)
T ss_dssp --CCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH----------------TCCBCHHHHHHHH
T ss_pred --CCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHH
Confidence 2345667777765432 12222334689999999999999998876532 1122245667888
Q ss_pred hhcCCCccc
Q 036977 369 PKLHSLKLE 377 (693)
Q Consensus 369 ~~c~glPLa 377 (693)
+.++|.|..
T Consensus 208 ~~~~G~~r~ 216 (373)
T 1jr3_A 208 RAAEGSLRD 216 (373)
T ss_dssp HHSSSCHHH
T ss_pred HHCCCCHHH
Confidence 999998874
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.63 E-value=2e-07 Score=104.57 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=38.1
Q ss_pred cccceeccCCCCcccccCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccccc---cccceeeccccc
Q 036977 594 LHLEELNAKEEHIGPLFPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISNS---TSVLHMTADNKE 670 (693)
Q Consensus 594 ~~L~~L~l~~~~l~~~~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~~---~~l~~l~~~~~~ 670 (693)
++|++|++++|.+..+-..+++|+.|+|++ +.+..+|. .+++|++|++++| +|..+|..+ .+|..|.+.+++
T Consensus 221 ~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~-N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLPVLPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCEEEccCCccCcCCCCCCcCcEEECCC-CCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 445555555555554444555566666665 34555554 4455666666665 455555543 234444444443
No 60
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.63 E-value=2.6e-07 Score=92.76 Aligned_cols=123 Identities=21% Similarity=0.381 Sum_probs=92.9
Q ss_pred hhhcccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC
Q 036977 510 STIQKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS 589 (693)
Q Consensus 510 ~~~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~ 589 (693)
..+.+++.|.+.+|.+..++...+.. +++|+.|.+.+|.-.. .++..+..+++|++|++++|.-
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~~~--------------l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSLPNGVFDK--------------LTNLKELVLVENQLQS--LPDGVFDKLTNLTYLNLAHNQL 145 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTT--------------CTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCCEEECCCCccCccChhHhcC--------------CcCCCEEECCCCcCCc--cCHHHhccCCCCCEEECCCCcc
Confidence 34567888888888777654433222 4688999998875432 4456688899999999988841
Q ss_pred -------CccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCccccccc-ccCCCCcCEEeccccc
Q 036977 590 -------LEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGN-IIELPELRYLTIENCP 649 (693)
Q Consensus 590 -------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~-i~~L~~L~~L~i~~C~ 649 (693)
+..+++|++|++++|.+..+ ++.+++|++|++++ +.+..+|.. +..+++|++|++++++
T Consensus 146 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCCC
Confidence 23678899999999877665 67899999999998 457777765 5789999999999865
No 61
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.63 E-value=1.8e-08 Score=104.56 Aligned_cols=120 Identities=19% Similarity=0.244 Sum_probs=63.1
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCc---------ccc-ccceeccCCCC--cc-----cccCC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLE---------EVL-HLEELNAKEEH--IG-----PLFPR 612 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~---------~l~-~L~~L~l~~~~--l~-----~~~~~ 612 (693)
+++|++|.+.+|..+.....+..+..+++|++|++++|..+. .++ +|++|+++++. +. ..+.+
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 356666666666444321133445556666666666663332 345 66666666652 22 22455
Q ss_pred CCCcCEeecCCCcCcc-cccccccCCCCcCEEecccccccccc----cccccccceeecccc
Q 036977 613 LSWLRLIDLPKLKRFY-NFTGNIIELPELRYLTIENCPDMETF----ISNSTSVLHMTADNK 669 (693)
Q Consensus 613 L~~L~~L~L~~c~~l~-~LP~~i~~L~~L~~L~i~~C~~L~~l----p~~~~~l~~l~~~~~ 669 (693)
+++|+.|++++|..+. ..|..+..+++|++|++++|..+..- .....+|+.|.+.+|
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 6666666666655333 34445556666666666666532211 112344556666555
No 62
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.62 E-value=7.5e-08 Score=90.86 Aligned_cols=162 Identities=14% Similarity=0.162 Sum_probs=87.9
Q ss_pred CCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccC-----CCCEEEEEEecCCCChHHHHHHH
Q 036977 156 DNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDK-----LIDKVVMAEVTQNPDPQKIQDKL 230 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~~~~wv~vs~~~~~~~~~~~i 230 (693)
....++||+++++.+.+.+.....+.+.|+|++|+|||++|+.+++...... .....++++++...
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 90 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV--------- 90 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH---------
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHh---------
Confidence 3567899999999999999877777889999999999999999999865321 01234555442110
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHH-hcCCcEEEEEeCCCCccCccccCCCCCCccccccc-ccCCCeEEEEecCChhhh
Q 036977 231 ASDLGMKFDLNDSIHHRASRLRERL-KQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDRE-DDQRRCTIILTSRSRDLL 308 (693)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L-~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~IivTtR~~~v~ 308 (693)
.. .............+.+.+ +..++.+||+||++....-..-.. ...+...+.. ....+..+|.||......
T Consensus 91 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 164 (195)
T 1jbk_A 91 ----AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPALARGELHCVGATTLDEYR 164 (195)
T ss_dssp ----TT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCCHHHHHHHHHTTSCCEEEEECHHHHH
T ss_pred ----cc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-hHHHHHHHHHhhccCCeEEEEeCCHHHHH
Confidence 00 000000111122222222 233678999999976521000000 0000111110 022345567776655421
Q ss_pred ------hhhcCCCcEEEcCCCCHHHHHHHH
Q 036977 309 ------CIDMNSQKIFWIDALSKEEALHLA 332 (693)
Q Consensus 309 ------~~~~~~~~~~~l~~L~~~ea~~Lf 332 (693)
.........+.+.+++.++..+++
T Consensus 165 ~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 165 QYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 111222336888998888876553
No 63
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.61 E-value=1.6e-07 Score=91.61 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=90.0
Q ss_pred cccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC---
Q 036977 513 QKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS--- 589 (693)
Q Consensus 513 ~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~--- 589 (693)
.+++.|.+.++.+..+....+.. +++|+.|.+.++.- .. .++..+..+++|++|+++++.-
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~--------------l~~L~~L~L~~N~l-~~-i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDS--------------LINLKELYLGSNQL-GA-LPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTT--------------CTTCCEEECCSSCC-CC-CCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCEEEcCCCccCccCHHHhhC--------------ccCCcEEECCCCCC-CC-cChhhcccCCCcCEEECCCCcCCcc
Confidence 45666677766666543322221 46888999888653 22 3456678999999999988742
Q ss_pred ----CccccccceeccCCCCcccc---cCCCCCcCEeecCCCcCccccccc-ccCCCCcCEEeccccc
Q 036977 590 ----LEEVLHLEELNAKEEHIGPL---FPRLSWLRLIDLPKLKRFYNFTGN-IIELPELRYLTIENCP 649 (693)
Q Consensus 590 ----l~~l~~L~~L~l~~~~l~~~---~~~L~~L~~L~L~~c~~l~~LP~~-i~~L~~L~~L~i~~C~ 649 (693)
+..+++|++|++++|.+..+ +..+++|++|+|++ +.+..+|.. +..+++|++|++.+.|
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 24678899999999877655 77899999999999 679999865 6789999999999865
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.60 E-value=1.1e-07 Score=95.73 Aligned_cols=117 Identities=17% Similarity=0.259 Sum_probs=60.7
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-------CCccccccceeccCCCCccc-----ccCCCCCcCE
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIGP-----LFPRLSWLRL 618 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~-----~~~~L~~L~~ 618 (693)
++|++|.+.++.-.. .++..+..+++|++|++.++. .+..+++|++|++++|.+.. .++.+++|++
T Consensus 76 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 76 SHLSTLILTGNPIQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp TTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred cCCCEEECCCCccCc--cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence 455666665543221 233455666666666665553 12345566666666654432 2555666666
Q ss_pred eecCCCcCccccc-ccccCCCCcC----EEecccccccccccccc---cccceeecccccc
Q 036977 619 IDLPKLKRFYNFT-GNIIELPELR----YLTIENCPDMETFISNS---TSVLHMTADNKEA 671 (693)
Q Consensus 619 L~L~~c~~l~~LP-~~i~~L~~L~----~L~i~~C~~L~~lp~~~---~~l~~l~~~~~~~ 671 (693)
|++++ +.+..+| ..+..+++|+ +|+++++ .+..+|... .+|+.|.+.++.-
T Consensus 154 L~Ls~-N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l 212 (276)
T 2z62_A 154 LDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQL 212 (276)
T ss_dssp EECCS-SCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSCC
T ss_pred EECCC-CCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCce
Confidence 66666 3355443 2333444444 5666655 355554432 2466666666543
No 65
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=1.2e-07 Score=110.22 Aligned_cols=18 Identities=6% Similarity=-0.127 Sum_probs=13.6
Q ss_pred hhhcccccccccccCccc
Q 036977 510 STIQKCYEEMIGFRDIKD 527 (693)
Q Consensus 510 ~~~~~l~~l~~~~~~l~~ 527 (693)
..+.+++.|.+.+|.+..
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg 462 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTY 462 (876)
T ss_dssp GGCTTCCEEEEESCCCCG
T ss_pred hcCCCCCEEECcCCcCCC
Confidence 456678888888888765
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.60 E-value=1.4e-07 Score=98.71 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=85.6
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCccc-----ccCCCCCcC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGP-----LFPRLSWLR 617 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~-----~~~~L~~L~ 617 (693)
+++|+.|.+.++.-.. .++..+.++++|++|+++++.- +..+++|++|++++|.+.. .+..+++|+
T Consensus 75 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 75 CVNLQALVLTSNGINT--IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp CTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred CCCCCEEECCCCccCc--cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 5688888888764322 3456788899999999988742 2357889999998876544 367888999
Q ss_pred EeecCCCcCccccc-ccccCCCCcCEEecccccccccc-cccc---cccceeeccccc
Q 036977 618 LIDLPKLKRFYNFT-GNIIELPELRYLTIENCPDMETF-ISNS---TSVLHMTADNKE 670 (693)
Q Consensus 618 ~L~L~~c~~l~~LP-~~i~~L~~L~~L~i~~C~~L~~l-p~~~---~~l~~l~~~~~~ 670 (693)
+|+++++..+..+| ..+..+++|++|++++|. +..+ |..+ .+|+.|.+.++.
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc
Confidence 99999876777774 467789999999999884 5555 4444 446666666554
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.60 E-value=1.1e-07 Score=107.02 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=93.5
Q ss_pred cccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc---cCCCCCc
Q 036977 547 VSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL---FPRLSWL 616 (693)
Q Consensus 547 ~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~---~~~L~~L 616 (693)
...+++|+.|.+.+|.-. .+..+..+++|++|++++|.- +..+++|++|++++|.+..+ +..+++|
T Consensus 228 ~~~~~~L~~L~L~~n~l~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 303 (597)
T 3oja_B 228 GPVNVELTILKLQHNNLT----DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL 303 (597)
T ss_dssp CSCCSCCCEEECCSSCCC----CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTC
T ss_pred cccCCCCCEEECCCCCCC----CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCC
Confidence 334567888888876532 246788999999999998852 33678999999999877665 6778999
Q ss_pred CEeecCCCcCcccccccccCCCCcCEEecccccccccccc-cccccceeeccccc
Q 036977 617 RLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS-NSTSVLHMTADNKE 670 (693)
Q Consensus 617 ~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~-~~~~l~~l~~~~~~ 670 (693)
+.|+|++ +.+..+|..+..+++|++|++++|. +..+|. ...+|..|.+++++
T Consensus 304 ~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 304 KVLDLSH-NHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CEEECCS-SCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred cEEECCC-CCCCccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCEEEeeCCC
Confidence 9999998 4688999999999999999999995 677754 44778888887755
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.60 E-value=3.6e-07 Score=102.41 Aligned_cols=88 Identities=19% Similarity=0.148 Sum_probs=47.7
Q ss_pred cccccccccccCccccccccCCCcccc----cCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC
Q 036977 513 QKCYEEMIGFRDIKDLQLSHFPRLQEI----WHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD 588 (693)
Q Consensus 513 ~~l~~l~~~~~~l~~l~~~~~~~L~~~----~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~ 588 (693)
.+++.|.+.+|.++.++. .+++|+.+ .....+|. .+++|++|.+.++.-.. .|. .+++|++|++++|.
T Consensus 61 ~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~l~~---l~~---~l~~L~~L~L~~N~ 132 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPV-LPPGLLELSIFSNPLTH---LPA---LPSGLCKLWIFGNQ 132 (622)
T ss_dssp TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCC-CCTTCCEEEECSCCCCC---CCC---CCTTCCEEECCSSC
T ss_pred CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCC-CCCCCCEEECcCCcCCC---CCC---CCCCcCEEECCCCC
Confidence 467777777777777665 44555521 12234444 45677777777653221 122 45556666665553
Q ss_pred CCc----cccccceeccCCCCcccc
Q 036977 589 SLE----EVLHLEELNAKEEHIGPL 609 (693)
Q Consensus 589 ~l~----~l~~L~~L~l~~~~l~~~ 609 (693)
+. .+++|++|++++|.+..+
T Consensus 133 -l~~lp~~l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 133 -LTSLPVLPPGLQELSVSDNQLASL 156 (622)
T ss_dssp -CSCCCCCCTTCCEEECCSSCCSCC
T ss_pred -CCcCCCCCCCCCEEECcCCcCCCc
Confidence 22 234566666666555443
No 69
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.59 E-value=2e-07 Score=97.14 Aligned_cols=155 Identities=16% Similarity=0.187 Sum_probs=89.0
Q ss_pred hhcccccccccccCcccccc-ccCCCcccccC----CCCCC-cccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEe
Q 036977 511 TIQKCYEEMIGFRDIKDLQL-SHFPRLQEIWH----GQALP-VSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEV 584 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~~l~~-~~~~~L~~~~~----~~~~~-~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l 584 (693)
.+.+++.+.+.+|.+..++. ..+++|+...- ...++ ...+++|+.|.+.+|.-.. .+. +..+++|++|++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~---~~~-~~~l~~L~~L~l 250 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD---LSP-LANLSQLTWLEI 250 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC---CGG-GTTCTTCCEEEC
T ss_pred cCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCC---Ccc-hhcCCCCCEEEC
Confidence 34556666666666655542 22444432111 01111 2235677777777764322 222 667777777777
Q ss_pred cCCC-----CCccccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc-
Q 036977 585 RNCD-----SLEEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS- 656 (693)
Q Consensus 585 ~~c~-----~l~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~- 656 (693)
++|. .+..+++|++|++++|.+..+ +..+++|+.|++++|.--...|..+..+++|++|++++|+ +..+|+
T Consensus 251 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~ 329 (347)
T 4fmz_A 251 GTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPL 329 (347)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGG
T ss_pred CCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccCh
Confidence 7763 233566777777777666555 6677777777777754333344556677777777777775 556544
Q ss_pred -cccccceeeccccc
Q 036977 657 -NSTSVLHMTADNKE 670 (693)
Q Consensus 657 -~~~~l~~l~~~~~~ 670 (693)
...+|+.|.+.+|+
T Consensus 330 ~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 330 ASLSKMDSADFANQV 344 (347)
T ss_dssp GGCTTCSEESSSCC-
T ss_pred hhhhccceeehhhhc
Confidence 22455566555543
No 70
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.59 E-value=1.4e-07 Score=98.99 Aligned_cols=138 Identities=18% Similarity=0.245 Sum_probs=100.4
Q ss_pred ccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC----
Q 036977 514 KCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS---- 589 (693)
Q Consensus 514 ~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~---- 589 (693)
.++.|.+.++.+..++...+. ..+++|+.|.+.++.-.. .++..+..+++|++|+++++.-
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~-------------~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~Ls~N~l~~~~ 104 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTP-------------TRLTNLHSLLLSHNHLNF--ISSEAFVPVPNLRYLDLSSNHLHTLD 104 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSS-------------SCCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCEEECCCCCCCccChhhhh-------------hcccccCEEECCCCcCCc--cChhhccCCCCCCEEECCCCcCCcCC
Confidence 355667777776665443322 024689999998865332 3456788999999999988752
Q ss_pred ---CccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccc----cCCCCcCEEeccccccccccccc-
Q 036977 590 ---LEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNI----IELPELRYLTIENCPDMETFISN- 657 (693)
Q Consensus 590 ---l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i----~~L~~L~~L~i~~C~~L~~lp~~- 657 (693)
+..+++|++|++++|.+..+ +..+++|+.|+|++ +.+..+|..+ ..+++|++|+++++ ++..+|..
T Consensus 105 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 182 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTD 182 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHH
T ss_pred HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHH
Confidence 34678999999999887655 88899999999998 6799999876 57999999999998 68888752
Q ss_pred ccc-----cceeeccc
Q 036977 658 STS-----VLHMTADN 668 (693)
Q Consensus 658 ~~~-----l~~l~~~~ 668 (693)
+.. +..|.+.+
T Consensus 183 ~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHN 198 (361)
T ss_dssp HHHSCHHHHTTEECCS
T ss_pred hhhccHhhcceEEecC
Confidence 222 34566655
No 71
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.59 E-value=5.9e-08 Score=87.76 Aligned_cols=104 Identities=17% Similarity=0.321 Sum_probs=73.5
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-----CCccccccceeccCCCCcccc----cCCCCCcCEee
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-----SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLID 620 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-----~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~ 620 (693)
+++|+.|.+.+|.-.. ...|..+..+++|++|++++|. .+..+++|++|++++|.+... +..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBT-TBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCCh-hHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3577777777765321 1334566777888888887763 233567777788777666552 56688899999
Q ss_pred cCCCcCccccc--ccccCCCCcCEEecccccccccccc
Q 036977 621 LPKLKRFYNFT--GNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 621 L~~c~~l~~LP--~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
+++ +.+..+| ..+..+++|++|++++| .+..+|.
T Consensus 95 ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 130 (149)
T 2je0_A 95 LSG-NKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLND 130 (149)
T ss_dssp CTT-SCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred CCC-CcCCChHHHHHHhhCCCCCEEeCcCC-cccchHH
Confidence 988 4577765 77888899999999988 4777765
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.58 E-value=9.2e-08 Score=98.14 Aligned_cols=120 Identities=10% Similarity=0.128 Sum_probs=78.7
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCC-----------ccccccceeccCCCCcccc-------cC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSL-----------EEVLHLEELNAKEEHIGPL-------FP 611 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l-----------~~l~~L~~L~l~~~~l~~~-------~~ 611 (693)
+++|+.|.+.+|.-.. .++..+..+++|++|+++++... ..+++|++|++++|.+..+ +.
T Consensus 144 ~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPA--FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCC--CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcch--hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 4577777777765432 34566777778888888777521 2567777777777776433 35
Q ss_pred CCCCcCEeecCCCcCcccc-cccccCC---CCcCEEecccccccccccccc-cccceeecccccccc
Q 036977 612 RLSWLRLIDLPKLKRFYNF-TGNIIEL---PELRYLTIENCPDMETFISNS-TSVLHMTADNKEAQK 673 (693)
Q Consensus 612 ~L~~L~~L~L~~c~~l~~L-P~~i~~L---~~L~~L~i~~C~~L~~lp~~~-~~l~~l~~~~~~~~~ 673 (693)
.+++|++|+|++ +.+..+ |..+..+ ++|++|++++| +++.+|... .+|+.|.++++.-..
T Consensus 222 ~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 222 AGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSNRLNR 286 (310)
T ss_dssp HTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECCSCCCCS
T ss_pred cCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECCCCcCCC
Confidence 667777788877 446655 6666655 57777787777 466776643 567777776655443
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.57 E-value=2.6e-08 Score=103.42 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=94.1
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCc---------cccccceeccCCC-Cccc-----ccCCCC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLE---------EVLHLEELNAKEE-HIGP-----LFPRLS 614 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~---------~l~~L~~L~l~~~-~l~~-----~~~~L~ 614 (693)
+++|++|.+.+|.-.. ..+..+..+++|++|++++|..+. .+++|++|+++++ .+.. .+..++
T Consensus 117 ~~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp BCCCSEEECTTCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred CCCCCEEeCcCcccCH--HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 5789999999985322 245678899999999999996554 5789999999998 7654 378889
Q ss_pred -CcCEeecCCCc-Cc--ccccccccCCCCcCEEeccccccccc-ccc---cccccceeeccccc
Q 036977 615 -WLRLIDLPKLK-RF--YNFTGNIIELPELRYLTIENCPDMET-FIS---NSTSVLHMTADNKE 670 (693)
Q Consensus 615 -~L~~L~L~~c~-~l--~~LP~~i~~L~~L~~L~i~~C~~L~~-lp~---~~~~l~~l~~~~~~ 670 (693)
+|++|++++|. .+ ..+|..+..+++|++|++++|..+.. .|. ...+|+.|.+.+|.
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 99999999985 45 45777778999999999999975542 333 23678889998886
No 74
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.57 E-value=1.7e-07 Score=90.97 Aligned_cols=123 Identities=16% Similarity=0.235 Sum_probs=94.0
Q ss_pred CCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-------CCccccccceeccCCCCcccc----cCCC
Q 036977 545 LPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIGPL----FPRL 613 (693)
Q Consensus 545 ~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~~----~~~L 613 (693)
+|......++.|.+.++. +....++..+..+++|++|+++++. .+..+++|++|++++|.+..+ +..+
T Consensus 26 iP~~~~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 26 IPEHIPQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp CCSCCCTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CccCCCCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 344445678899998864 3333344568899999999998875 244788999999999887665 7889
Q ss_pred CCcCEeecCCCcCcccc-cccccCCCCcCEEecccccccccc-cccc---cccceeeccccc
Q 036977 614 SWLRLIDLPKLKRFYNF-TGNIIELPELRYLTIENCPDMETF-ISNS---TSVLHMTADNKE 670 (693)
Q Consensus 614 ~~L~~L~L~~c~~l~~L-P~~i~~L~~L~~L~i~~C~~L~~l-p~~~---~~l~~l~~~~~~ 670 (693)
++|++|+|++ +.+..+ |..+..+++|++|+++++ ++..+ |..+ .+|..|.+.+.+
T Consensus 105 ~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 105 ESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 9999999999 668777 667889999999999998 68888 4444 456667776643
No 75
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.57 E-value=2.3e-07 Score=94.89 Aligned_cols=118 Identities=17% Similarity=0.230 Sum_probs=83.9
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC--------CccccccceeccCCCCcccc----cCCCCCcC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS--------LEEVLHLEELNAKEEHIGPL----FPRLSWLR 617 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~--------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~ 617 (693)
+++|+.|.+.++.-.. .++..+..+++|++|+++++.. +..+++|++|++++|.+... +..+++|+
T Consensus 125 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 125 LRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp CTTCCEEECTTSCCEE--CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCEEECCCCcCCc--cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 4678888888765332 3456677888899998887742 33567888888888776554 67788899
Q ss_pred EeecCCCcCcccccc-cccCCCCcCEEeccccccccccc-cc----ccccceeecccccc
Q 036977 618 LIDLPKLKRFYNFTG-NIIELPELRYLTIENCPDMETFI-SN----STSVLHMTADNKEA 671 (693)
Q Consensus 618 ~L~L~~c~~l~~LP~-~i~~L~~L~~L~i~~C~~L~~lp-~~----~~~l~~l~~~~~~~ 671 (693)
.|+|++ +.+..+|. .+..+++|++|++++|. +...+ .. +.+|..|.+.+++-
T Consensus 203 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 203 VLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp EEECTT-SCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred EEECCC-CccCccChhhccCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCCe
Confidence 999988 45776665 56788889999999884 55543 22 24677788877543
No 76
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.57 E-value=6.5e-07 Score=90.82 Aligned_cols=172 Identities=9% Similarity=0.087 Sum_probs=106.2
Q ss_pred cccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHHHHhhccCC---C-C-EEEEEEecCCCChHHHHHH
Q 036977 159 AFDSRMKVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKL---I-D-KVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 159 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~-~~~wv~vs~~~~~~~~~~~ 229 (693)
.+.||+++++.|...|. ++..+.+.|+|++|+|||++++.|+++...... . . .++++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 36799999999987774 457788999999999999999999999864311 1 1 3567777777888999999
Q ss_pred HHHHhCCCCC-CCCCHHHHHHHHHHHH--hcCCcEEEEEeCCCCccCccccCCCCCCcccccccc--cCCCeEEEEecCC
Q 036977 230 LASDLGMKFD-LNDSIHHRASRLRERL--KQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDRED--DQRRCTIILTSRS 304 (693)
Q Consensus 230 i~~~l~~~~~-~~~~~~~~~~~l~~~L--~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~IivTtR~ 304 (693)
|++++..... .....+ ....+...+ ...++++++||+++...+-+.+ . .+++-. ......||.++..
T Consensus 101 I~~~L~g~~~~~~~~~~-~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L-~------~l~~~~~~~~s~~~vI~i~n~ 172 (318)
T 3te6_A 101 IWFAISKENLCGDISLE-ALNFYITNVPKAKKRKTLILIQNPENLLSEKIL-Q------YFEKWISSKNSKLSIICVGGH 172 (318)
T ss_dssp HHHHHSCCC--CCCCHH-HHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHH-H------HHHHHHHCSSCCEEEEEECCS
T ss_pred HHHHhcCCCCCchHHHH-HHHHHHHHhhhccCCceEEEEecHHHhhcchHH-H------HHHhcccccCCcEEEEEEecC
Confidence 9999954321 112222 222233332 1236799999999876421111 0 011100 1112234444443
Q ss_pred hhhhhhhc------CC-CcEEEcCCCCHHHHHHHHHHhhhh
Q 036977 305 RDLLCIDM------NS-QKIFWIDALSKEEALHLAKLQHLE 338 (693)
Q Consensus 305 ~~v~~~~~------~~-~~~~~l~~L~~~ea~~Lf~~~~~~ 338 (693)
.+...... .. ...+...+++.++-.+++.+++..
T Consensus 173 ~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 173 NVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp SCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 32211000 11 247899999999999999988764
No 77
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.56 E-value=2.1e-07 Score=101.64 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=109.1
Q ss_pred hcccccccccccCcccccccc---CCCcccccC----CCCCCc---ccccCcceeeecCCCCCCcCCCchhhcCCCCCCE
Q 036977 512 IQKCYEEMIGFRDIKDLQLSH---FPRLQEIWH----GQALPV---SFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRY 581 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~---~~~L~~~~~----~~~~~~---~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~ 581 (693)
+.+++.|.+.++.+..++... +++|+.+.- ...+++ ..+++|+.|.+.++.-.. ..+..+..+++|++
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY--ISHRAFSGLNSLEQ 156 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE--ECTTSSTTCTTCCE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce--eChhhccCCCCCCE
Confidence 455667777777776665443 344442211 111111 124678888887764332 34567888899999
Q ss_pred EEecCCCC-------CccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccc
Q 036977 582 LEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPD 650 (693)
Q Consensus 582 L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~ 650 (693)
|++++|.- +..+++|++|++.++.+..+ +..+++|+.|++++|+.+..+|.......+|++|++++| +
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~ 235 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-N 235 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-C
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-c
Confidence 99988742 23677889999888776554 778899999999998888888888888889999999998 5
Q ss_pred cccccc----cccccceeeccccccc
Q 036977 651 METFIS----NSTSVLHMTADNKEAQ 672 (693)
Q Consensus 651 L~~lp~----~~~~l~~l~~~~~~~~ 672 (693)
+..+|. ...+|+.|.++++.-.
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred ccccCHHHhcCccccCeeECCCCcCC
Confidence 888874 3466778887776543
No 78
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.55 E-value=4.5e-07 Score=94.47 Aligned_cols=158 Identities=17% Similarity=0.268 Sum_probs=105.7
Q ss_pred hhhcccccccccccCcccccc-ccCCCcccccC----CCCCC-cccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEE
Q 036977 510 STIQKCYEEMIGFRDIKDLQL-SHFPRLQEIWH----GQALP-VSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLE 583 (693)
Q Consensus 510 ~~~~~l~~l~~~~~~l~~l~~-~~~~~L~~~~~----~~~~~-~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~ 583 (693)
..+.+++.|.+.+|.+..++. ..+++|+...- ...++ ...+++|+.|.+.+|..... +..+..+++|++|+
T Consensus 85 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~l~~L~~L~ 161 (347)
T 4fmz_A 85 SNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLT 161 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCC---CGGGTTCTTCCEEE
T ss_pred hcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCccc---ccchhhCCCCcEEE
Confidence 345677778888877776652 23555552221 11222 22356777788777765542 23477888888888
Q ss_pred ecCCCC-----CccccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc
Q 036977 584 VRNCDS-----LEEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 584 l~~c~~-----l~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
+++|.. +..+++|++|+++++.+..+ +..+++|+.|++.++ .+..++. +..+++|++|++++| ++..+|.
T Consensus 162 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~ 238 (347)
T 4fmz_A 162 VTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIGNN-KITDLSP 238 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG
T ss_pred ecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccC-CCCCCch-hhcCCcCCEEEccCC-ccCCCcc
Confidence 877753 33667888888888776655 677888888888874 5666655 778899999999988 5777765
Q ss_pred --cccccceeecccccccc
Q 036977 657 --NSTSVLHMTADNKEAQK 673 (693)
Q Consensus 657 --~~~~l~~l~~~~~~~~~ 673 (693)
...+|+.|.+.+|.-..
T Consensus 239 ~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC
T ss_pred hhcCCCCCEEECCCCccCC
Confidence 33667888887775444
No 79
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.55 E-value=2.9e-07 Score=91.92 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=45.6
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-----CccccccceeccCCCCcccc--cCCCCCcCEeecC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-----LEEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLP 622 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-----l~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~ 622 (693)
+++|+.|.+.++.- . ..+. +..+++|++|+++++.- +.. ++|++|++++|.+..+ +..+++|+.|+++
T Consensus 62 l~~L~~L~L~~N~i-~--~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 62 FTNLKELHLSHNQI-S--DLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIR 136 (263)
T ss_dssp CTTCCEEECCSSCC-C--CCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECT
T ss_pred CCCCCEEECCCCcc-C--CChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECC
Confidence 34555555555431 1 1122 55555555555555421 111 4455555555554443 5555555555555
Q ss_pred CCcCcccccccccCCCCcCEEecccc
Q 036977 623 KLKRFYNFTGNIIELPELRYLTIENC 648 (693)
Q Consensus 623 ~c~~l~~LP~~i~~L~~L~~L~i~~C 648 (693)
+ +++..+| .+..+++|++|++++|
T Consensus 137 ~-N~i~~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 137 N-NKLKSIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp T-SCCCBCG-GGGGCTTCCEEECTTS
T ss_pred C-CcCCCCh-HHccCCCCCEEECCCC
Confidence 5 3355554 4455555555555555
No 80
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.55 E-value=5.2e-07 Score=99.89 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=93.8
Q ss_pred cccccccccccCccccccccCCCccccc----CCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC
Q 036977 513 QKCYEEMIGFRDIKDLQLSHFPRLQEIW----HGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD 588 (693)
Q Consensus 513 ~~l~~l~~~~~~l~~l~~~~~~~L~~~~----~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~ 588 (693)
.+++.|.+.+|.+..+| ..+++|+.+. ....+|. +..+|+.|.+.++.- .. +|. .+++|++|+++++.
T Consensus 80 ~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l-~~--lp~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 80 PQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQL-TM--LPE---LPALLEYINADNNQ 151 (571)
T ss_dssp TTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCC-SC--CCC---CCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcC-CC--CCC---cCccccEEeCCCCc
Confidence 46888888888888887 6666666322 2234555 444788888877643 22 233 57888888887774
Q ss_pred CCc----cccccceeccCCCCcccccCCCCCcCEeecCCCcCcccccccccCCCCc-------CEEeccccccccccccc
Q 036977 589 SLE----EVLHLEELNAKEEHIGPLFPRLSWLRLIDLPKLKRFYNFTGNIIELPEL-------RYLTIENCPDMETFISN 657 (693)
Q Consensus 589 ~l~----~l~~L~~L~l~~~~l~~~~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L-------~~L~i~~C~~L~~lp~~ 657 (693)
+. .+++|++|++++|.+..+-.-.++|++|+|++ +.+..+|. +.. +| ++|++++| ++..+|..
T Consensus 152 -l~~lp~~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~-N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~ 225 (571)
T 3cvr_A 152 -LTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVST-NLLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPEN 225 (571)
T ss_dssp -CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS-SCCSSCCC-CC----------CCEEEECCSS-CCCCCCGG
T ss_pred -cCcCCCcCCCcCEEECCCCCCCCcchhhCCCCEEECcC-CCCCchhh-HHH--hhhcccccceEEecCCC-cceecCHH
Confidence 32 34578888888876655422116888888887 56888887 543 66 88888887 57888875
Q ss_pred c---cccceeecccccc
Q 036977 658 S---TSVLHMTADNKEA 671 (693)
Q Consensus 658 ~---~~l~~l~~~~~~~ 671 (693)
. .+|..|.+.+++-
T Consensus 226 l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPL 242 (571)
T ss_dssp GGGSCTTEEEECCSSSC
T ss_pred HhcCCCCCEEEeeCCcC
Confidence 4 3455555555543
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.54 E-value=1e-07 Score=98.09 Aligned_cols=155 Identities=10% Similarity=0.135 Sum_probs=111.8
Q ss_pred hcccccccccccCccccccccCCCccccc----CCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCC
Q 036977 512 IQKCYEEMIGFRDIKDLQLSHFPRLQEIW----HGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNC 587 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~~~~L~~~~----~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c 587 (693)
+.+++.|.+.+|.+..++.. ++|+... ....++...+++|+.|.+.++.-.. .++..+..+++|++|+++++
T Consensus 79 l~~L~~L~Ls~n~l~~l~~~--~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELLVG--PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM--LRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp CTTCCEEECCSSEEEEEEEC--TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCS--GGGBCTGGGSSEEEEECTTS
T ss_pred cCCCCEEECcCCccccccCC--CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCC--ccchhhhccCCCCEEECCCC
Confidence 34566666666666554422 3333211 1123334447889999999876433 34557788999999999988
Q ss_pred CCC--------ccccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccccccccccc
Q 036977 588 DSL--------EEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISN 657 (693)
Q Consensus 588 ~~l--------~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~ 657 (693)
.-- ..+++|++|++++|.+..+ ...+++|++|+|++ +.+..+|..+..+++|++|++++| .+..+|..
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~ 232 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA 232 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTT
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhH
Confidence 522 2468999999999988777 45589999999999 569999999999999999999999 68899876
Q ss_pred c---cccceeeccccccc
Q 036977 658 S---TSVLHMTADNKEAQ 672 (693)
Q Consensus 658 ~---~~l~~l~~~~~~~~ 672 (693)
+ .+|+.|.+.+++-.
T Consensus 233 ~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCCTTCCEEECTTCCCB
T ss_pred hhcCCCCCEEEccCCCcc
Confidence 5 56777777766543
No 82
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.54 E-value=2.3e-07 Score=104.61 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=114.8
Q ss_pred hhcccccccccccCcccccccc--CCCcccccCC----CCCCc----ccccCcceeeecCCCCCCcCCCchhhcCCCCCC
Q 036977 511 TIQKCYEEMIGFRDIKDLQLSH--FPRLQEIWHG----QALPV----SFFNNLRELVVDDCTNMSSAIPANLLRCLNNLR 580 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~~l~~~~--~~~L~~~~~~----~~~~~----~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~ 580 (693)
.+.+++.|.+.+|.+..++... +++|+...-. ...++ ..+++|+.|.+.+|.-.. ..|..+..+++|+
T Consensus 374 ~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI--DFDGIFLGLTSLN 451 (606)
T ss_dssp CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE--CCTTTTTTCTTCC
T ss_pred cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc--cchhhhcCCCCCC
Confidence 4567888888888887766322 5555532211 11111 225688999998887543 4567889999999
Q ss_pred EEEecCCCC--------CccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccc-cccccCCCCcCEEeccc
Q 036977 581 YLEVRNCDS--------LEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNF-TGNIIELPELRYLTIEN 647 (693)
Q Consensus 581 ~L~l~~c~~--------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~L-P~~i~~L~~L~~L~i~~ 647 (693)
+|++++|.. +..+++|++|++++|.+... ++.+++|++|+|++|. +..+ |..+..+++|++|++++
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTT
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCC
Confidence 999988852 34678999999999887555 7889999999999964 6555 88889999999999999
Q ss_pred ccccccccccc----cccceeeccccc
Q 036977 648 CPDMETFISNS----TSVLHMTADNKE 670 (693)
Q Consensus 648 C~~L~~lp~~~----~~l~~l~~~~~~ 670 (693)
| ++..+|..+ .+|+.|.+.+++
T Consensus 531 N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 531 N-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp S-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred C-cCcccCHhHhhhcccCcEEEccCCC
Confidence 9 488998754 247788887744
No 83
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.53 E-value=5.8e-07 Score=97.37 Aligned_cols=154 Identities=12% Similarity=0.129 Sum_probs=74.4
Q ss_pred hcccccccccccCccccccccCCCcccccC-----CCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecC
Q 036977 512 IQKCYEEMIGFRDIKDLQLSHFPRLQEIWH-----GQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRN 586 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~-----~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~ 586 (693)
+.+++.|.+.++.+..++...+++|+...- ...++...+++|+.|.+.++. +.. .+ +..+++|++|++++
T Consensus 126 l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~~--l~--l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-ITE--LD--VSQNKLLNRLNCDT 200 (457)
T ss_dssp CTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC-CCC--CC--CTTCTTCCEEECCS
T ss_pred CCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc-cce--ec--cccCCCCCEEECcC
Confidence 445555555555555554444444442211 111222224455555555543 111 12 45556666666655
Q ss_pred CC----CCccccccceeccCCCCcccc-cCCCCCcCEeecCCCcCccccccc-ccCCC-------CcCEEeccccccccc
Q 036977 587 CD----SLEEVLHLEELNAKEEHIGPL-FPRLSWLRLIDLPKLKRFYNFTGN-IIELP-------ELRYLTIENCPDMET 653 (693)
Q Consensus 587 c~----~l~~l~~L~~L~l~~~~l~~~-~~~L~~L~~L~L~~c~~l~~LP~~-i~~L~-------~L~~L~i~~C~~L~~ 653 (693)
|. .+..+++|++|++++|.+..+ ++.+++|++|++++ +.+..+|.+ +.+|+ +|+.|++++|+.+..
T Consensus 201 N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~-N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 201 NNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSV-NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp SCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCS-SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred CcCCeeccccCCCCCEEECcCCcccccCccccCCCCEEEeeC-CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 53 233455666666666555444 55566666666666 345555421 11222 334455555554555
Q ss_pred cccc-ccccceeecccccc
Q 036977 654 FISN-STSVLHMTADNKEA 671 (693)
Q Consensus 654 lp~~-~~~l~~l~~~~~~~ 671 (693)
+|.. ..+|+.|.+++|..
T Consensus 280 ~~~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 280 FQAEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp EECTTCTTCCCCCCTTCTT
T ss_pred ccccccccCCEEECCCCcc
Confidence 5532 25566666666653
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.53 E-value=3.3e-07 Score=92.16 Aligned_cols=103 Identities=17% Similarity=0.294 Sum_probs=82.3
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-------CCccccccceeccCCCCcccc----cCCCCCcCE
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIGPL----FPRLSWLRL 618 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~ 618 (693)
+++|+.|.+.++.-.. .++..+..+++|++|+++++. .+..+++|++|+++++.+..+ ++.+++|++
T Consensus 51 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 51 FPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp CTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred ccCCcEEECCCCcCCc--cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 5689999998874332 345678899999999998885 244678999999998776655 788999999
Q ss_pred eecCCCcCccc--ccccccCCCCcCEEecccccccccccc
Q 036977 619 IDLPKLKRFYN--FTGNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 619 L~L~~c~~l~~--LP~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
|++++ +.+.. +|..+..+++|++|++++| ++..+|.
T Consensus 129 L~l~~-n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~ 166 (276)
T 2z62_A 129 LNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC 166 (276)
T ss_dssp EECCS-SCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECG
T ss_pred EECcC-CccceecCchhhccCCCCCEEECCCC-CCCcCCH
Confidence 99998 55665 6888999999999999998 5777754
No 85
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.53 E-value=2.8e-07 Score=100.69 Aligned_cols=119 Identities=17% Similarity=0.239 Sum_probs=85.5
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-------CCccccccceeccCCCCcccc----cCCCCCcCE
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIGPL----FPRLSWLRL 618 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~ 618 (693)
+++|++|.+.++.-.. .++..+.++++|++|+++++. .+..+++|++|++++|.+..+ +..+++|+.
T Consensus 79 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKL--IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp CTTCCEEECCSSCCCS--CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred CccCCEEECCCCcCCc--cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 4578888887764222 344567788899999998775 234678888999888776554 778889999
Q ss_pred eecCCCcCccccccc-ccCCCCcCEEecccccccccccc----cccccceeeccccccc
Q 036977 619 IDLPKLKRFYNFTGN-IIELPELRYLTIENCPDMETFIS----NSTSVLHMTADNKEAQ 672 (693)
Q Consensus 619 L~L~~c~~l~~LP~~-i~~L~~L~~L~i~~C~~L~~lp~----~~~~l~~l~~~~~~~~ 672 (693)
|+|++| .+..+|.. +..+++|+.|++.++ .+..++. ...+|+.|.+.+|...
T Consensus 157 L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 157 LTLEKC-NLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EEEESC-CCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred EECCCC-cCcccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccc
Confidence 999884 57777653 678899999999988 4666654 2356777777776543
No 86
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.52 E-value=3.7e-07 Score=95.75 Aligned_cols=125 Identities=17% Similarity=0.233 Sum_probs=96.8
Q ss_pred CCCcccccCcceeeecCCCCCCcCCCchhhc-CCCCCCEEEecCCC-------CCccccccceeccCCCCcccc----cC
Q 036977 544 ALPVSFFNNLRELVVDDCTNMSSAIPANLLR-CLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIGPL----FP 611 (693)
Q Consensus 544 ~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~-~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~~----~~ 611 (693)
.+|...+++++.|.+.++. +.. .++..+. .+++|++|+++++. .+..+++|++|++++|.+..+ +.
T Consensus 32 ~iP~~~~~~l~~L~Ls~N~-l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 109 (361)
T 2xot_A 32 NVPQSLPSYTALLDLSHNN-LSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS 109 (361)
T ss_dssp SCCSSCCTTCSEEECCSSC-CCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ccCccCCCCCCEEECCCCC-CCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhC
Confidence 3444445678999998864 332 3455666 89999999998875 244788999999999888766 78
Q ss_pred CCCCcCEeecCCCcCcccc-cccccCCCCcCEEeccccccccccccc-------ccccceeeccccccc
Q 036977 612 RLSWLRLIDLPKLKRFYNF-TGNIIELPELRYLTIENCPDMETFISN-------STSVLHMTADNKEAQ 672 (693)
Q Consensus 612 ~L~~L~~L~L~~c~~l~~L-P~~i~~L~~L~~L~i~~C~~L~~lp~~-------~~~l~~l~~~~~~~~ 672 (693)
.+++|++|+|++ +.+..+ |..+..+++|++|+++++ +|..+|.. ..+|+.|.++++.-.
T Consensus 110 ~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 110 DLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp TCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 899999999999 567777 567889999999999998 68888864 356777777665443
No 87
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.52 E-value=2.3e-07 Score=97.02 Aligned_cols=119 Identities=11% Similarity=0.211 Sum_probs=92.6
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC--------CCccccccceeccCCC-Ccccc----cCCCCCc
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD--------SLEEVLHLEELNAKEE-HIGPL----FPRLSWL 616 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~--------~l~~l~~L~~L~l~~~-~l~~~----~~~L~~L 616 (693)
+++|++|.+.++.-.. .++..+..+++|++|+++++. .+..+++|++|++++| .+..+ ++.+++|
T Consensus 99 l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp CTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCCCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 4688999998865332 345568999999999998873 2446889999999987 35443 7889999
Q ss_pred CEeecCCCcCcccc-cccccCCCCcCEEeccccccccccccc----ccccceeeccccccc
Q 036977 617 RLIDLPKLKRFYNF-TGNIIELPELRYLTIENCPDMETFISN----STSVLHMTADNKEAQ 672 (693)
Q Consensus 617 ~~L~L~~c~~l~~L-P~~i~~L~~L~~L~i~~C~~L~~lp~~----~~~l~~l~~~~~~~~ 672 (693)
+.|+++++. +..+ |..+..+++|++|+++++. +..+|.. ..+|+.|.++++.-.
T Consensus 177 ~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 177 EELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CEEECCCCC-cCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccc
Confidence 999999955 5555 8889999999999999985 7788763 467888888776543
No 88
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.51 E-value=2.1e-07 Score=104.05 Aligned_cols=124 Identities=17% Similarity=0.256 Sum_probs=72.1
Q ss_pred cccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC----
Q 036977 513 QKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD---- 588 (693)
Q Consensus 513 ~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~---- 588 (693)
.+++.|.+.++.++.++...+.+ +++|+.|++.+|.-.. .++..+.++++|++|+++++.
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~--------------l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFS--------------FPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTT--------------CSSCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred ccccEEEccCCccCccChhHhhC--------------CCCceEEECCCCcCCc--cCcccccCchhCCEEeCcCCcCCcc
Confidence 34666777777766554332221 3566666666653221 234556666777777776663
Q ss_pred ---CCccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCccc--ccccccCCCCcCEEecccccccccc
Q 036977 589 ---SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYN--FTGNIIELPELRYLTIENCPDMETF 654 (693)
Q Consensus 589 ---~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~--LP~~i~~L~~L~~L~i~~C~~L~~l 654 (693)
.+..+++|++|+++++.+..+ ++++++|++|+++++ .+.. +|..++++++|++|++++| ++..+
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~ 164 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSI 164 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTS-CCCEE
T ss_pred CHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCC-cccee
Confidence 233556667777666555443 566677777777663 3443 5666666777777777666 34444
No 89
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.51 E-value=2.1e-07 Score=95.12 Aligned_cols=119 Identities=17% Similarity=0.239 Sum_probs=92.7
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC--------CCccccccceeccCCCCcccc----cCCCCCcC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD--------SLEEVLHLEELNAKEEHIGPL----FPRLSWLR 617 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~--------~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~ 617 (693)
+++|+.|.+.++.-. ..+..+..+++|++|+++++. .+..+++|++|+++++.+... +..+++|+
T Consensus 77 ~~~L~~L~Ls~n~i~---~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp CSCCCEEECCSCSEE---EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred ccccCEEECCCCccc---cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 468999999887532 345668899999999998873 345778999999999876544 78899999
Q ss_pred EeecCCCcCccc--ccccccCCCCcCEEeccccccccccc-ccc---cccceeecccccccc
Q 036977 618 LIDLPKLKRFYN--FTGNIIELPELRYLTIENCPDMETFI-SNS---TSVLHMTADNKEAQK 673 (693)
Q Consensus 618 ~L~L~~c~~l~~--LP~~i~~L~~L~~L~i~~C~~L~~lp-~~~---~~l~~l~~~~~~~~~ 673 (693)
+|+++++ .+.. +|..+..+++|++|++++| ++..++ ..+ .+|+.|.+.++.-..
T Consensus 154 ~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 154 VLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp EEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred EEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 9999995 4654 7989999999999999999 577774 333 567788887775443
No 90
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.51 E-value=1.6e-07 Score=106.42 Aligned_cols=102 Identities=10% Similarity=0.218 Sum_probs=52.2
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCc---------cc------cccceeccCCCCcc---c--c
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLE---------EV------LHLEELNAKEEHIG---P--L 609 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~---------~l------~~L~~L~l~~~~l~---~--~ 609 (693)
+++|++|.+.+|.-.. ..|..+.++++|++|++++|..+. .+ ++|++|++++|.+. . .
T Consensus 248 l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp CTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred cCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 3456666666654333 334556666666666666654222 11 55666666554332 2 2
Q ss_pred cCCCCCcCEeecCCCcCcc-cccccccCCCCcCEEecccccccccccc
Q 036977 610 FPRLSWLRLIDLPKLKRFY-NFTGNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 610 ~~~L~~L~~L~L~~c~~l~-~LP~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
++++++|++|++++ +.+. .+| .++.+++|++|++++| ++..+|.
T Consensus 326 l~~l~~L~~L~L~~-N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~ 370 (636)
T 4eco_A 326 LQKMKKLGMLECLY-NQLEGKLP-AFGSEIKLASLNLAYN-QITEIPA 370 (636)
T ss_dssp HTTCTTCCEEECCS-CCCEEECC-CCEEEEEESEEECCSS-EEEECCT
T ss_pred hccCCCCCEEeCcC-CcCccchh-hhCCCCCCCEEECCCC-ccccccH
Confidence 44555566666655 2344 555 4455555555555554 2444444
No 91
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.51 E-value=1.9e-07 Score=105.64 Aligned_cols=127 Identities=17% Similarity=0.255 Sum_probs=95.8
Q ss_pred hcccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC---
Q 036977 512 IQKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD--- 588 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~--- 588 (693)
+.+++.|.+++|.++.++...+.+ +++|++|++.+|.- .. .++..+.+|++|++|+++++.
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~--------------l~~L~~L~Ls~N~i-~~-i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFS--------------FPELQVLDLSRCEI-QT-IEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTT--------------CTTCCEEECTTCCC-CE-ECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhC--------------CCCCCEEECCCCcC-CC-cChhHhcCCCCCCEEEccCCcCCC
Confidence 346788888888888776555443 45888898888753 22 345678899999999998874
Q ss_pred ----CCccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCccc--ccccccCCCCcCEEecccccccccccc
Q 036977 589 ----SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYN--FTGNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 589 ----~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~--LP~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
.+..+++|++|++++|++..+ ++++++|++|++++ +.+.. +|..++.+++|++|+++++ +++.++.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 190 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC 190 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECG
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc-CccccCCCchhhccchhhhhhcccCc-ccccccc
Confidence 123678899999998777655 78899999999998 45654 4677788999999999988 4666643
No 92
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.51 E-value=5.5e-07 Score=85.27 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=79.3
Q ss_pred CCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCC
Q 036977 544 ALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPR 612 (693)
Q Consensus 544 ~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~ 612 (693)
.+|...+++|+.|.+.++. +. ..|..+..+++|++|+++++.- +..+++|++|++++|.+..+ +..
T Consensus 24 ~ip~~~~~~l~~L~L~~n~-i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~ 100 (193)
T 2wfh_A 24 VLPKGIPRDVTELYLDGNQ-FT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG 100 (193)
T ss_dssp SCCSCCCTTCCEEECCSSC-CC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred cCCCCCCCCCCEEECCCCc-Cc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCC
Confidence 3444445689999988764 33 4457889999999999988752 34678899999999877665 778
Q ss_pred CCCcCEeecCCCcCccccccc-ccCCCCcCEEeccccc
Q 036977 613 LSWLRLIDLPKLKRFYNFTGN-IIELPELRYLTIENCP 649 (693)
Q Consensus 613 L~~L~~L~L~~c~~l~~LP~~-i~~L~~L~~L~i~~C~ 649 (693)
+++|++|+|++ +.+..+|.. +..+++|++|++.+.|
T Consensus 101 l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 101 LKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 89999999998 678888875 5689999999998754
No 93
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.50 E-value=6e-07 Score=83.63 Aligned_cols=102 Identities=19% Similarity=0.322 Sum_probs=77.1
Q ss_pred CCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCCC
Q 036977 545 LPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPRL 613 (693)
Q Consensus 545 ~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~L 613 (693)
+|...+++|+.|.+.++.- .. .++..+..+++|++|+++++.- +..+++|++|++++|.+..+ +..+
T Consensus 22 ~p~~~~~~l~~L~l~~n~l-~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 99 (177)
T 2o6r_A 22 VPTGIPSSATRLELESNKL-QS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99 (177)
T ss_dssp CCTTCCTTCSEEECCSSCC-CC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCCCCCcEEEeCCCcc-cE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence 4444457899999988653 32 3455678899999999988741 23567888888888776655 5778
Q ss_pred CCcCEeecCCCcCcccccccc-cCCCCcCEEeccccc
Q 036977 614 SWLRLIDLPKLKRFYNFTGNI-IELPELRYLTIENCP 649 (693)
Q Consensus 614 ~~L~~L~L~~c~~l~~LP~~i-~~L~~L~~L~i~~C~ 649 (693)
++|++|++++ +.+..+|..+ ..+++|++|++.+++
T Consensus 100 ~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 100 TQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCC
Confidence 8999999998 5788888775 678999999998875
No 94
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.50 E-value=2.3e-07 Score=104.65 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=55.8
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-------CCccccccceeccCCCCcc-----cccCCCCCcCE
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIG-----PLFPRLSWLRL 618 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~-----~~~~~L~~L~~ 618 (693)
++|++|.+.++.-.. .+|..+.++++|++|++++|. .+..+++|++|++++|.+. ..++++++|++
T Consensus 80 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 80 HHLSNLILTGNPIQS--FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp TTCCEEECTTCCCCC--CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred hhcCEeECCCCcccc--cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence 355555555543221 234555566666666665553 1224455566665554433 22555566666
Q ss_pred eecCCCcCccccc-ccccCCCCcC----EEecccccccccccccc---cccceeecccc
Q 036977 619 IDLPKLKRFYNFT-GNIIELPELR----YLTIENCPDMETFISNS---TSVLHMTADNK 669 (693)
Q Consensus 619 L~L~~c~~l~~LP-~~i~~L~~L~----~L~i~~C~~L~~lp~~~---~~l~~l~~~~~ 669 (693)
|+++++ .+..+| ..++.+++|+ +|+++++ .+..+|... .+|+.|.+.++
T Consensus 158 L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 158 VDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp EECCSS-CCCEECTTTTHHHHHCTTCCCEEECTTC-CCCEECTTTTTTCEEEEEEEESC
T ss_pred EEccCC-cceecChhhhhhhhccccccceeeccCC-CcceeCcccccCceeeeeeccCC
Confidence 666553 344432 2344444333 5555555 245554432 24555555554
No 95
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.49 E-value=6.3e-07 Score=102.56 Aligned_cols=115 Identities=18% Similarity=0.275 Sum_probs=84.9
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC---------------CccccccceeccCCCCcccc----c
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS---------------LEEVLHLEELNAKEEHIGPL----F 610 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~---------------l~~l~~L~~L~l~~~~l~~~----~ 610 (693)
+++|+.|.+.++.-.. .++..+..+++|++|+++++.- +..+++|++|++++|.+..+ +
T Consensus 479 l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 479 LRNLTILDLSNNNIAN--INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp CTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCEEECCCCCCCc--CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 4567777777654322 3455678888888888887741 34567888888888776654 6
Q ss_pred CCCCCcCEeecCCCcCcccccccc-cCCCCcCEEeccccccccccccc-----ccccceeeccc
Q 036977 611 PRLSWLRLIDLPKLKRFYNFTGNI-IELPELRYLTIENCPDMETFISN-----STSVLHMTADN 668 (693)
Q Consensus 611 ~~L~~L~~L~L~~c~~l~~LP~~i-~~L~~L~~L~i~~C~~L~~lp~~-----~~~l~~l~~~~ 668 (693)
..+++|+.|+|++ +++..+|.+. ..+++|++|+++++ ++..+|+. ..++..|.+.+
T Consensus 557 ~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 557 KDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTT
T ss_pred ccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccC
Confidence 7888899999987 6788888775 58899999999988 67887753 35677787766
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.49 E-value=3.1e-07 Score=102.80 Aligned_cols=142 Identities=18% Similarity=0.283 Sum_probs=107.3
Q ss_pred hhhcccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-
Q 036977 510 STIQKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD- 588 (693)
Q Consensus 510 ~~~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~- 588 (693)
..+.+++.|.+.++.+..++ . -..+++|+.|.+.+|.-.. .+. +..|++|+.|+|++|.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-----~-----------l~~l~~L~~L~Ls~N~l~~---~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-----G-----------IQYLPNVTKLFLNGNKLTD---IKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-----T-----------GGGCTTCCEEECTTSCCCC---CGG-GGGCTTCCEEECCSSCC
T ss_pred hcCCCCCEEECcCCCCCCCh-----H-----------HccCCCCCEEEeeCCCCCC---Chh-hccCCCCCEEECcCCCC
Confidence 44566666666666665542 1 1236799999999875332 233 8899999999998884
Q ss_pred ----CCccccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc--cccc
Q 036977 589 ----SLEEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS--NSTS 660 (693)
Q Consensus 589 ----~l~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~--~~~~ 660 (693)
.+..+++|++|++++|.+..+ +..|++|+.|+|++| .+..+ ..+..+++|++|++++| .+..+++ ...+
T Consensus 100 ~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~ 176 (605)
T 1m9s_A 100 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTK 176 (605)
T ss_dssp CCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSS-CCCCCGGGTTCTT
T ss_pred CCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCC-cCCCchhhccCCC
Confidence 445788999999999888776 888999999999994 58877 57889999999999999 5777765 2366
Q ss_pred cceeeccccccccc
Q 036977 661 VLHMTADNKEAQKL 674 (693)
Q Consensus 661 l~~l~~~~~~~~~~ 674 (693)
|+.|.+++|.-...
T Consensus 177 L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 177 LQNLYLSKNHISDL 190 (605)
T ss_dssp CCEEECCSSCCCBC
T ss_pred CCEEECcCCCCCCC
Confidence 88888888755443
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.49 E-value=2.5e-07 Score=94.99 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=83.8
Q ss_pred ccCcceeeecCCCCCCcCCCchhh--cCCCCCCEEEecCCCCCc----------cccccceeccCCCCcccc-----cCC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLL--RCLNNLRYLEVRNCDSLE----------EVLHLEELNAKEEHIGPL-----FPR 612 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l--~~L~~L~~L~l~~c~~l~----------~l~~L~~L~l~~~~l~~~-----~~~ 612 (693)
+++|+.|.+.++.-......+..+ ..+++|++|++++|.--. .+++|++|++++|.+... +..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 568888998887633211123344 789999999999985321 457999999999887663 556
Q ss_pred CCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccccccccceee
Q 036977 613 LSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISNSTSVLHMT 665 (693)
Q Consensus 613 L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~~~~l~~l~ 665 (693)
+++|++|+|++ +.+..+|..+. ++|++|+++++ ++..+|. +..+.+|+
T Consensus 252 l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~ 299 (312)
T 1wwl_A 252 PSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVG 299 (312)
T ss_dssp CTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEE
T ss_pred cCCCCEEECCC-CccChhhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCC
Confidence 79999999999 56889999887 89999999998 6888876 54444443
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.48 E-value=1.7e-07 Score=96.22 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=85.3
Q ss_pred ccCcceeeecCCCCCCc--CCCchhhcCCCCCCEEEecCCCCC----------ccccccceeccCCCCcccc----cCCC
Q 036977 550 FNNLRELVVDDCTNMSS--AIPANLLRCLNNLRYLEVRNCDSL----------EEVLHLEELNAKEEHIGPL----FPRL 613 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~--~~~~~~l~~L~~L~~L~l~~c~~l----------~~l~~L~~L~l~~~~l~~~----~~~L 613 (693)
+++|++|.+.++.-... ...+..+..+++|++|++++|.-- ..+++|++|++++|.+... ++.+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 56889999888753221 122334568999999999998531 2458999999999887766 5555
Q ss_pred ---CCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc--cccccceeeccc
Q 036977 614 ---SWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS--NSTSVLHMTADN 668 (693)
Q Consensus 614 ---~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~--~~~~l~~l~~~~ 668 (693)
++|++|+|++ +.++.+|..+. ++|++|++++| ++..+|. ...+|+.|.+.+
T Consensus 248 ~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 248 MWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDG 303 (310)
T ss_dssp CCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSS
T ss_pred cCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcC
Confidence 6999999998 66899998874 89999999998 5777754 335566666644
No 99
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.48 E-value=5.8e-07 Score=85.07 Aligned_cols=103 Identities=23% Similarity=0.360 Sum_probs=77.1
Q ss_pred CCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-------CCccccccceeccCCCCcccc----cCCC
Q 036977 545 LPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIGPL----FPRL 613 (693)
Q Consensus 545 ~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~~----~~~L 613 (693)
+|...+.+++.|.+.++. +....+...+..+++|++|+++++. .+..+++|++|++++|.+..+ +..+
T Consensus 23 ip~~~~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 101 (192)
T 1w8a_A 23 IPRDIPLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101 (192)
T ss_dssp CCSCCCTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC
T ss_pred CccCCCCCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCC
Confidence 344445588888888764 3322222357889999999998874 233678899999999887665 7789
Q ss_pred CCcCEeecCCCcCcccc-cccccCCCCcCEEeccccc
Q 036977 614 SWLRLIDLPKLKRFYNF-TGNIIELPELRYLTIENCP 649 (693)
Q Consensus 614 ~~L~~L~L~~c~~l~~L-P~~i~~L~~L~~L~i~~C~ 649 (693)
++|++|+|++ +.+..+ |..+..+++|++|++++.+
T Consensus 102 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 102 HQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 9999999998 567766 6678899999999999875
No 100
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.47 E-value=6.4e-07 Score=91.95 Aligned_cols=94 Identities=11% Similarity=0.103 Sum_probs=46.8
Q ss_pred CcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc---cCCCCCcCEeec
Q 036977 552 NLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL---FPRLSWLRLIDL 621 (693)
Q Consensus 552 ~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~---~~~L~~L~~L~L 621 (693)
+|+.|.+.++.-.. ..|..+..++ |++|+++++.. +..+++|++|++++|.+... +..+++|++|+|
T Consensus 175 ~L~~L~L~~N~l~~--~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L 251 (313)
T 1ogq_A 175 LFTSMTISRNRLTG--KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251 (313)
T ss_dssp TCCEEECCSSEEEE--ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEEC
T ss_pred cCcEEECcCCeeec--cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEEC
Confidence 44455554433211 2234444444 55555555431 22445556666655544322 445556666666
Q ss_pred CCCcCcc-cccccccCCCCcCEEeccccc
Q 036977 622 PKLKRFY-NFTGNIIELPELRYLTIENCP 649 (693)
Q Consensus 622 ~~c~~l~-~LP~~i~~L~~L~~L~i~~C~ 649 (693)
+++. +. .+|..+..+++|++|++++|.
T Consensus 252 s~N~-l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 252 RNNR-IYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CSSC-CEECCCGGGGGCTTCCEEECCSSE
T ss_pred cCCc-ccCcCChHHhcCcCCCEEECcCCc
Confidence 6533 33 455556666666666666653
No 101
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.47 E-value=2.4e-07 Score=95.09 Aligned_cols=118 Identities=10% Similarity=0.164 Sum_probs=75.8
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-------CCccccccceeccCCCCcc----cccCCCC-CcC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIG----PLFPRLS-WLR 617 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~----~~~~~L~-~L~ 617 (693)
+++|++|.+.++.-.. ..|..+..+++|++|+++++. .+..+++|++|++++|.+. ..++.++ +|+
T Consensus 100 l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSG--AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp CTTCSEEEEEEECCEE--ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred CCCCCEEECcCCeeCC--cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 4577777777654322 345677778888888887764 1335677888888776654 2366666 788
Q ss_pred EeecCCCcCcc-cccccccCCCCcCEEeccccccccc-cccc---ccccceeeccccccc
Q 036977 618 LIDLPKLKRFY-NFTGNIIELPELRYLTIENCPDMET-FISN---STSVLHMTADNKEAQ 672 (693)
Q Consensus 618 ~L~L~~c~~l~-~LP~~i~~L~~L~~L~i~~C~~L~~-lp~~---~~~l~~l~~~~~~~~ 672 (693)
+|+++++. +. .+|..+..++ |++|++++|. +.. .|.. ..+|+.|.+.++.-.
T Consensus 178 ~L~L~~N~-l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 178 SMTISRNR-LTGKIPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp EEECCSSE-EEEECCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred EEECcCCe-eeccCChHHhCCc-ccEEECcCCc-ccCcCCHHHhcCCCCCEEECCCCcee
Confidence 88888743 44 6677777776 8888888774 443 3333 245666666665443
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.47 E-value=1.8e-07 Score=102.42 Aligned_cols=147 Identities=10% Similarity=-0.009 Sum_probs=104.2
Q ss_pred cccccccccccCccccccccCCCcccccC----CCCCCc---ccccCcceeeecCCCCCCcCCCchhhc-CCCCCCEEEe
Q 036977 513 QKCYEEMIGFRDIKDLQLSHFPRLQEIWH----GQALPV---SFFNNLRELVVDDCTNMSSAIPANLLR-CLNNLRYLEV 584 (693)
Q Consensus 513 ~~l~~l~~~~~~l~~l~~~~~~~L~~~~~----~~~~~~---~~~~~L~~L~i~~c~~~~~~~~~~~l~-~L~~L~~L~l 584 (693)
.+++.|.+.+|.+..++...+++|+.+.- ...+++ +.+++|+.|.+.++.-.. .+|..+. .+++|++|++
T Consensus 99 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC--cChHHHhhhCCcccEEec
Confidence 45666777777776666555666653221 112222 225688888888765332 2355555 7999999999
Q ss_pred cCCCC-----CccccccceeccCCCCcccc---cCCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccccc-cccc
Q 036977 585 RNCDS-----LEEVLHLEELNAKEEHIGPL---FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDM-ETFI 655 (693)
Q Consensus 585 ~~c~~-----l~~l~~L~~L~l~~~~l~~~---~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L-~~lp 655 (693)
++|.- ...+++|++|++++|.+..+ ++.+++|+.|+|++ +.+..+|..+..+++|+.|++++|+-. ..+|
T Consensus 177 s~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp TTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred CCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCCcCcchH
Confidence 99852 23588999999999887655 77889999999999 669999999999999999999998743 2455
Q ss_pred ccccccc
Q 036977 656 SNSTSVL 662 (693)
Q Consensus 656 ~~~~~l~ 662 (693)
.....+.
T Consensus 256 ~~~~~l~ 262 (487)
T 3oja_A 256 DFFSKNQ 262 (487)
T ss_dssp HHHTTCH
T ss_pred HHHHhCC
Confidence 5444433
No 103
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.47 E-value=1.1e-06 Score=95.18 Aligned_cols=148 Identities=17% Similarity=0.110 Sum_probs=99.8
Q ss_pred hcccccccccccCccccccccCCCccccc----CCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCC
Q 036977 512 IQKCYEEMIGFRDIKDLQLSHFPRLQEIW----HGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNC 587 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~~~~L~~~~----~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c 587 (693)
+.+++.|.+.++.+..++.. +++|+... ....++. ..++|++|.+.+|.- .. .| .+..+++|++|+++++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~-~~~L~~L~l~~n~l~~l~~-~~~~L~~L~L~~n~l-~~--lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL-PQSLKSLLVDNNNLKALSD-LPPLLEYLGVSNNQL-EK--LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC-CTTCCEEECCSSCCSCCCS-CCTTCCEEECCSSCC-SS--CC-CCTTCTTCCEEECCSS
T ss_pred cCCCCEEEccCCcCCccccc-cCCCcEEECCCCccCcccC-CCCCCCEEECcCCCC-CC--Cc-ccCCCCCCCEEECCCC
Confidence 35678888888888776632 34554221 1122222 236888888888743 32 34 4888999999999887
Q ss_pred CCCcc----ccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccccccccccc--cc
Q 036977 588 DSLEE----VLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISN--ST 659 (693)
Q Consensus 588 ~~l~~----l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~--~~ 659 (693)
. +.. +++|++|++++|.+..+ ++.+++|++|++++ +.+..+|... ++|++|++++| .+..+|.. ..
T Consensus 164 ~-l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~-N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~~~~l~ 237 (454)
T 1jl5_A 164 S-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN-NSLKKLPDLP---LSLESIVAGNN-ILEELPELQNLP 237 (454)
T ss_dssp C-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS-SCCSSCCCCC---TTCCEEECCSS-CCSSCCCCTTCT
T ss_pred c-CcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCC-CcCCcCCCCc---CcccEEECcCC-cCCcccccCCCC
Confidence 4 332 35788898888776655 78888899999988 4577777644 58889999988 57788752 24
Q ss_pred ccceeecccccc
Q 036977 660 SVLHMTADNKEA 671 (693)
Q Consensus 660 ~l~~l~~~~~~~ 671 (693)
+|+.|.+.++.-
T Consensus 238 ~L~~L~l~~N~l 249 (454)
T 1jl5_A 238 FLTTIYADNNLL 249 (454)
T ss_dssp TCCEEECCSSCC
T ss_pred CCCEEECCCCcC
Confidence 566777766543
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.47 E-value=3.1e-07 Score=82.90 Aligned_cols=116 Identities=23% Similarity=0.223 Sum_probs=87.4
Q ss_pred hcccccccccccCcc--ccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC
Q 036977 512 IQKCYEEMIGFRDIK--DLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS 589 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~--~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~ 589 (693)
..+++.+.+.++.+. .++.. + ..+++|+.|.+.+|. +.. . ..+..+++|++|++++|.-
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~-~--------------~~l~~L~~L~l~~n~-l~~--~-~~~~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGL-T--------------DEFEELEFLSTINVG-LTS--I-ANLPKLNKLKKLELSDNRV 76 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSC-C--------------TTCTTCCEEECTTSC-CCC--C-TTCCCCTTCCEEECCSSCC
T ss_pred CccCeEEEccCCcCChhHHHHH-H--------------hhcCCCcEEECcCCC-CCC--c-hhhhcCCCCCEEECCCCcc
Confidence 456777777777765 33211 0 125789999998874 332 2 6788899999999988863
Q ss_pred Cc-------cccccceeccCCCCcccc-----cCCCCCcCEeecCCCcCcccccc----cccCCCCcCEEeccc
Q 036977 590 LE-------EVLHLEELNAKEEHIGPL-----FPRLSWLRLIDLPKLKRFYNFTG----NIIELPELRYLTIEN 647 (693)
Q Consensus 590 l~-------~l~~L~~L~l~~~~l~~~-----~~~L~~L~~L~L~~c~~l~~LP~----~i~~L~~L~~L~i~~ 647 (693)
-. .+++|++|++++|.+..+ ++.+++|++|++++| .+..+|. .+..+++|++|++++
T Consensus 77 ~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 77 SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 32 478999999999877653 788999999999995 6888886 577899999999864
No 105
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.46 E-value=5.6e-07 Score=101.81 Aligned_cols=124 Identities=17% Similarity=0.249 Sum_probs=96.0
Q ss_pred CCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-------CCccccccceeccCCCCcccc----cCC
Q 036977 544 ALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIGPL----FPR 612 (693)
Q Consensus 544 ~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~~----~~~ 612 (693)
.+|....++++.|++.+.. +.. .++..|..+++|++|++++|. .+..+++|++|++++|++..+ |.+
T Consensus 45 ~vP~~lp~~~~~LdLs~N~-i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLPFSTKNLDLSFNP-LRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSCTTCCEEECTTSC-CCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCCcCCCEEEeeCCC-CCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 4555544689999999843 432 356789999999999999984 134688999999999887665 789
Q ss_pred CCCcCEeecCCCcCccccccc-ccCCCCcCEEecccccccccc--cccc---cccceeecccccc
Q 036977 613 LSWLRLIDLPKLKRFYNFTGN-IIELPELRYLTIENCPDMETF--ISNS---TSVLHMTADNKEA 671 (693)
Q Consensus 613 L~~L~~L~L~~c~~l~~LP~~-i~~L~~L~~L~i~~C~~L~~l--p~~~---~~l~~l~~~~~~~ 671 (693)
|++|++|+|++ +.+..+|.. ++++++|++|+++++ .+..+ |... .+|+.|.++++.-
T Consensus 123 L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 123 LSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccc
Confidence 99999999999 468888865 789999999999998 46554 4443 4567777766543
No 106
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.46 E-value=3.9e-07 Score=100.67 Aligned_cols=156 Identities=12% Similarity=0.138 Sum_probs=106.4
Q ss_pred ccccccccccCcccccc-ccCCCcccccCC----C-CCCc--ccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEec
Q 036977 514 KCYEEMIGFRDIKDLQL-SHFPRLQEIWHG----Q-ALPV--SFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVR 585 (693)
Q Consensus 514 ~l~~l~~~~~~l~~l~~-~~~~~L~~~~~~----~-~~~~--~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~ 585 (693)
+++.|.+.++.+...+. ..+++|+...-. . ..|. ..+++|+.|.+.+|.-......|..+..+++|++|+++
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 35556666665544432 334444421111 1 1222 22568888888887543211234678899999999998
Q ss_pred CCCCC--------ccccccceeccCCCCcccc-cCCC-CCcCEeecCCCcCcccccccccCCCCcCEEeccccccccccc
Q 036977 586 NCDSL--------EEVLHLEELNAKEEHIGPL-FPRL-SWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFI 655 (693)
Q Consensus 586 ~c~~l--------~~l~~L~~L~l~~~~l~~~-~~~L-~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp 655 (693)
+|.-- ..+++|++|++++|.+... ...+ ++|+.|++++ +++..+|..+..+++|++|++++| ++..+|
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCC
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccC
Confidence 87532 3467899999999887544 3334 6999999999 468899999999999999999999 688998
Q ss_pred cc-c---cccceeecccccc
Q 036977 656 SN-S---TSVLHMTADNKEA 671 (693)
Q Consensus 656 ~~-~---~~l~~l~~~~~~~ 671 (693)
.. + .+|+.|.+.+++-
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCB
T ss_pred HHHhccCCcccEEECcCCCC
Confidence 75 3 4677777777554
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.45 E-value=4.8e-07 Score=91.78 Aligned_cols=140 Identities=17% Similarity=0.274 Sum_probs=106.6
Q ss_pred hhcccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC--
Q 036977 511 TIQKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-- 588 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-- 588 (693)
.+.+++.+.+.++.+..++. + ..+++|+.|.+.+|.-.. .+. +..+++|++|+++++.
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-----~-----------~~l~~L~~L~L~~n~l~~---~~~-l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-----I-----------QYLPNVTKLFLNGNKLTD---IKP-LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-----G-----------GGCTTCCEEECCSSCCCC---CGG-GTTCTTCCEEECCSSCCC
T ss_pred hcCcccEEEccCCCcccChh-----H-----------hcCCCCCEEEccCCccCC---Ccc-cccCCCCCEEECCCCcCC
Confidence 46667777777777765421 1 225789999999875432 233 8899999999998875
Q ss_pred ---CCccccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc--ccccc
Q 036977 589 ---SLEEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS--NSTSV 661 (693)
Q Consensus 589 ---~l~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~--~~~~l 661 (693)
.+..+++|++|++++|.+..+ +..+++|+.|++++ +.+..+ ..+..+++|++|++++| .+..+|+ ...+|
T Consensus 104 ~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~-n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L 180 (291)
T 1h6t_A 104 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN-NKITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKL 180 (291)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS-SCCCCC-GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTC
T ss_pred CChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccC-CcCCcc-hhhccCCCCCEEEccCC-ccccchhhcCCCcc
Confidence 344778999999999888776 78899999999998 568877 47889999999999999 5778765 23567
Q ss_pred ceeecccccccc
Q 036977 662 LHMTADNKEAQK 673 (693)
Q Consensus 662 ~~l~~~~~~~~~ 673 (693)
+.|.++++.-..
T Consensus 181 ~~L~L~~N~i~~ 192 (291)
T 1h6t_A 181 QNLYLSKNHISD 192 (291)
T ss_dssp CEEECCSSCCCB
T ss_pred CEEECCCCcCCC
Confidence 777777765443
No 108
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.45 E-value=6.5e-07 Score=97.00 Aligned_cols=117 Identities=13% Similarity=0.097 Sum_probs=61.5
Q ss_pred hhcccccccccccCccccccccCCCcccccC----CCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecC
Q 036977 511 TIQKCYEEMIGFRDIKDLQLSHFPRLQEIWH----GQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRN 586 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~----~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~ 586 (693)
.+.+++.|.+.++.++.++...+++|+...- ...++-+.+++|+.|.+.++.-.. .| +..+++|++|++++
T Consensus 168 ~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~---ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE---ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp TCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC---CC--CTTCTTCSEEECCS
T ss_pred cCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc---cC--ccccCCCCEEEeeC
Confidence 3456677777777777666555555552211 122233334566666666653222 22 55667777777766
Q ss_pred CCC----CccccccceeccCCCCcccc------------cCCCCCcCEeecCCCcCcccccc
Q 036977 587 CDS----LEEVLHLEELNAKEEHIGPL------------FPRLSWLRLIDLPKLKRFYNFTG 632 (693)
Q Consensus 587 c~~----l~~l~~L~~L~l~~~~l~~~------------~~~L~~L~~L~L~~c~~l~~LP~ 632 (693)
+.- ...+++|+.|+++.+++..+ ++.+++|+.|++++|..+..+|.
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc
Confidence 531 12344444444433332222 34556667777776666666553
No 109
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.45 E-value=3.8e-07 Score=101.53 Aligned_cols=118 Identities=15% Similarity=0.207 Sum_probs=68.7
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC--------CccccccceeccCCCC-ccc----ccCCCCCc
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS--------LEEVLHLEELNAKEEH-IGP----LFPRLSWL 616 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~--------l~~l~~L~~L~l~~~~-l~~----~~~~L~~L 616 (693)
+++|++|++.++.-.. .++..+..+++|++|++++|.- +..+++|++|+++++. +.. .+.++++|
T Consensus 73 l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSS--LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp CTTCCEEECTTSCCCS--CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred cccCCEEECCCCccCc--cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence 3466666666654322 3344567777777777766631 2245667777776654 222 25667777
Q ss_pred CEeecCCCcCcccccccccCCCCcCEEeccccccccccccc----ccccceeeccccc
Q 036977 617 RLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISN----STSVLHMTADNKE 670 (693)
Q Consensus 617 ~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~----~~~l~~l~~~~~~ 670 (693)
++|+++++.--...|..+..+++|++|++.++. +..+|.. ..+|+.|.+.++.
T Consensus 151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCB
T ss_pred CeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccCCc
Confidence 777777644222356666677777777777663 4444442 3566677666654
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.45 E-value=5.5e-07 Score=89.86 Aligned_cols=139 Identities=17% Similarity=0.303 Sum_probs=102.5
Q ss_pred hcccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC--
Q 036977 512 IQKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-- 589 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-- 589 (693)
+.++..+.+..+.+..++ +...+++|+.|.+.+|. +. ..+ .+..+++|++|++++|.-
T Consensus 18 l~~l~~l~l~~~~i~~~~----------------~~~~l~~L~~L~l~~n~-i~--~l~-~l~~l~~L~~L~L~~N~i~~ 77 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV----------------SQKELSGVQNFNGDNSN-IQ--SLA-GMQFFTNLKELHLSHNQISD 77 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE----------------CHHHHTTCSEEECTTSC-CC--CCT-TGGGCTTCCEEECCSSCCCC
T ss_pred HHHHHHHHhcCCCccccc----------------chhhcCcCcEEECcCCC-cc--cch-HHhhCCCCCEEECCCCccCC
Confidence 455566666666665543 01226789999999874 33 233 688999999999988842
Q ss_pred ---CccccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc--cccccc
Q 036977 590 ---LEEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS--NSTSVL 662 (693)
Q Consensus 590 ---l~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~--~~~~l~ 662 (693)
+..+++|++|++++|.+..+ +.. ++|+.|++++ +.+..+| .+..+++|++|++++| ++..+|. ...+|+
T Consensus 78 ~~~l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~l~~l~~L~ 153 (263)
T 1xeu_A 78 LSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDN-NELRDTD-SLIHLKNLEILSIRNN-KLKSIVMLGFLSKLE 153 (263)
T ss_dssp CGGGTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCS-SCCSBSG-GGTTCTTCCEEECTTS-CCCBCGGGGGCTTCC
T ss_pred ChhhccCCCCCEEECCCCccCCcCcccc-CcccEEEccC-CccCCCh-hhcCcccccEEECCCC-cCCCChHHccCCCCC
Confidence 34778999999999887765 444 8999999999 5688876 5889999999999998 5888864 235677
Q ss_pred eeeccccccccc
Q 036977 663 HMTADNKEAQKL 674 (693)
Q Consensus 663 ~l~~~~~~~~~~ 674 (693)
.|.++++.-...
T Consensus 154 ~L~L~~N~i~~~ 165 (263)
T 1xeu_A 154 VLDLHGNEITNT 165 (263)
T ss_dssp EEECTTSCCCBC
T ss_pred EEECCCCcCcch
Confidence 777777655443
No 111
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.45 E-value=5.4e-07 Score=103.10 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=68.4
Q ss_pred cccccccccccCcccccccc---CCCccccc----CCCCCCcc---cccCcceeeecCCCCCCcCCCchhhcCCCCCCEE
Q 036977 513 QKCYEEMIGFRDIKDLQLSH---FPRLQEIW----HGQALPVS---FFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYL 582 (693)
Q Consensus 513 ~~l~~l~~~~~~l~~l~~~~---~~~L~~~~----~~~~~~~~---~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L 582 (693)
.++++|.+.++.+..++... +++|+.+. ....+++. .+++|+.|.+.++.-.. .++..+..+++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc--cChhhhccCCCCCEE
Confidence 35666666666666554332 22232111 01111111 13456666665543221 233346666666666
Q ss_pred EecCCC-------CCccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCccccccc-c--cCCCCcCEEecccc
Q 036977 583 EVRNCD-------SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGN-I--IELPELRYLTIENC 648 (693)
Q Consensus 583 ~l~~c~-------~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~-i--~~L~~L~~L~i~~C 648 (693)
++++|. .+..+++|++|++++|.+... ++++++|++|+++++ .+..+|.. + ..+++|++|++++|
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCC
Confidence 666552 123455666666666554333 455666666666663 34444432 1 24466666666666
Q ss_pred ccccccc
Q 036977 649 PDMETFI 655 (693)
Q Consensus 649 ~~L~~lp 655 (693)
.+..++
T Consensus 182 -~l~~~~ 187 (680)
T 1ziw_A 182 -QIKEFS 187 (680)
T ss_dssp -CCCCBC
T ss_pred -cccccC
Confidence 344443
No 112
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.43 E-value=7.3e-07 Score=99.57 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=90.3
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC--------CccccccceeccCCCCcccc-cCCC-CCcCEe
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS--------LEEVLHLEELNAKEEHIGPL-FPRL-SWLRLI 619 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~--------l~~l~~L~~L~l~~~~l~~~-~~~L-~~L~~L 619 (693)
+++|+.|.+.++.-......|..+..+++|++|+++++.- +..+++|++|++++|.+... +..+ ++|++|
T Consensus 376 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L 455 (562)
T 3a79_B 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL 455 (562)
T ss_dssp CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEE
T ss_pred cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEE
Confidence 5688888888764322112245688899999999988753 23568899999999888544 4455 699999
Q ss_pred ecCCCcCcccccccccCCCCcCEEeccccccccccccc-c---cccceeeccccc
Q 036977 620 DLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISN-S---TSVLHMTADNKE 670 (693)
Q Consensus 620 ~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~-~---~~l~~l~~~~~~ 670 (693)
+|+++ .+..+|.++..+++|++|+++++ ++..+|.. + .+|+.|.+.+++
T Consensus 456 ~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 456 DLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp ECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred ECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 99984 79999999999999999999998 68899875 3 456667776654
No 113
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.42 E-value=8.9e-07 Score=95.94 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=11.6
Q ss_pred cccccccccccCccccc
Q 036977 513 QKCYEEMIGFRDIKDLQ 529 (693)
Q Consensus 513 ~~l~~l~~~~~~l~~l~ 529 (693)
.+++.|.+.++.+..++
T Consensus 30 ~~l~~L~Ls~n~i~~~~ 46 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELN 46 (455)
T ss_dssp TTCCEEECCSSCCCEEC
T ss_pred CccCEEEecCCccCcCC
Confidence 45777777777776653
No 114
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.42 E-value=5.7e-07 Score=100.53 Aligned_cols=120 Identities=16% Similarity=0.221 Sum_probs=76.9
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC--------CCccccccceeccCCCCcccc----cCCCCCcCE
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD--------SLEEVLHLEELNAKEEHIGPL----FPRLSWLRL 618 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~--------~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~ 618 (693)
++|+.|.+.+|.-.. .+..+..+++|++|++.+|. .+..+++|++|+++++.+... +..+++|++
T Consensus 373 ~~L~~L~l~~n~l~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 373 TSLKYLDLSFNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp SCCCEEECCSCSEEE---EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred CccCEEECCCCcccc---ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 455555555543221 12236667777777776653 233567788888877665443 677888888
Q ss_pred eecCCCcCc-ccccccccCCCCcCEEecccccccccc-cccc---cccceeeccccccccc
Q 036977 619 IDLPKLKRF-YNFTGNIIELPELRYLTIENCPDMETF-ISNS---TSVLHMTADNKEAQKL 674 (693)
Q Consensus 619 L~L~~c~~l-~~LP~~i~~L~~L~~L~i~~C~~L~~l-p~~~---~~l~~l~~~~~~~~~~ 674 (693)
|++++|.-. ..+|..+..+++|++|++++| ++..+ |..+ .+|+.|.+.+|.-...
T Consensus 450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred EECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 888885522 257888888888999999888 46666 4433 5677777777754443
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.42 E-value=1.4e-06 Score=94.78 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=87.4
Q ss_pred hhcccccccccccCccccc-cccCCCcccccCC----CCCC-cccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEe
Q 036977 511 TIQKCYEEMIGFRDIKDLQ-LSHFPRLQEIWHG----QALP-VSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEV 584 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~~l~-~~~~~~L~~~~~~----~~~~-~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l 584 (693)
.+.+++.|.+.++.+..++ ...+++|+.+.-. ..++ -..+++|+.|.+.+|.-.. .+ .+..+++|++|++
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~---~~-~~~~l~~L~~L~l 272 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN---LA-PLSGLTKLTELKL 272 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC---CG-GGTTCTTCSEEEC
T ss_pred cCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc---ch-hhhcCCCCCEEEC
Confidence 3455666666666654432 2234444422111 1111 1124566666666654322 11 2666777777777
Q ss_pred cCCCC-----CccccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEeccccccccccccc
Q 036977 585 RNCDS-----LEEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISN 657 (693)
Q Consensus 585 ~~c~~-----l~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~ 657 (693)
++|.- +..+++|++|+++++.+..+ ++.+++|+.|++++| .+..++. +..+++|++|++++| ++..+|..
T Consensus 273 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l 349 (466)
T 1o6v_A 273 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVSSL 349 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCGGG
T ss_pred CCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCchhh
Confidence 66632 23556677777777666555 566777777777774 3555544 567777777777777 46665432
Q ss_pred --ccccceeeccccccccc
Q 036977 658 --STSVLHMTADNKEAQKL 674 (693)
Q Consensus 658 --~~~l~~l~~~~~~~~~~ 674 (693)
..+|+.|.+.+|.-...
T Consensus 350 ~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp TTCTTCCEEECCSSCCCBC
T ss_pred ccCCCCCEEeCCCCccCcc
Confidence 25566666666654433
No 116
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.41 E-value=7.1e-07 Score=99.29 Aligned_cols=118 Identities=19% Similarity=0.280 Sum_probs=87.2
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCccc-----ccCCCCCcC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGP-----LFPRLSWLR 617 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~-----~~~~L~~L~ 617 (693)
+++|++|.+.++.-.. .++..+..+++|++|++++|.- +..+++|++|++++|.+.. .++++++|+
T Consensus 49 l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 49 CANLQVLILKSSRINT--IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp CTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred CCcccEEECCCCCcCc--cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 5688888888875332 3457788999999999988852 3367889999999876653 378899999
Q ss_pred EeecCCCcCccccc-ccccCCCCcCEEeccccccccc-ccccc---cccceeeccccc
Q 036977 618 LIDLPKLKRFYNFT-GNIIELPELRYLTIENCPDMET-FISNS---TSVLHMTADNKE 670 (693)
Q Consensus 618 ~L~L~~c~~l~~LP-~~i~~L~~L~~L~i~~C~~L~~-lp~~~---~~l~~l~~~~~~ 670 (693)
+|++++|..+..+| ..+..+++|++|++++|. +.. .|..+ .+|+.|.+.++.
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSB
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhccccCceEecccCc
Confidence 99999877677787 467889999999999885 554 45554 345556555544
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.41 E-value=5.2e-07 Score=94.22 Aligned_cols=159 Identities=12% Similarity=0.084 Sum_probs=85.2
Q ss_pred hcccccccccccCc-cccccccCCCc---cc-----ccCCCCCCccc---ccCcceeeecCCCCCCcCCCchhhcCCCCC
Q 036977 512 IQKCYEEMIGFRDI-KDLQLSHFPRL---QE-----IWHGQALPVSF---FNNLRELVVDDCTNMSSAIPANLLRCLNNL 579 (693)
Q Consensus 512 ~~~l~~l~~~~~~l-~~l~~~~~~~L---~~-----~~~~~~~~~~~---~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L 579 (693)
+.+++.|.+.+|.+ +.++...+.++ .. ......+++.. +++|+.|.+.++.-.. .++..+.....+
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~l 130 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH--LPDVHKIHSLQK 130 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS--CCCCTTCCBSSC
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc--CCchhhcccchh
Confidence 44566666666664 33443333222 21 11222333332 3456666665543221 223344445556
Q ss_pred CEEEecCCCCCccc---------cccceeccCCCCcccc---cCCCCCcCEeecCCCcCcccccccc-cCCCCcCEEecc
Q 036977 580 RYLEVRNCDSLEEV---------LHLEELNAKEEHIGPL---FPRLSWLRLIDLPKLKRFYNFTGNI-IELPELRYLTIE 646 (693)
Q Consensus 580 ~~L~l~~c~~l~~l---------~~L~~L~l~~~~l~~~---~~~L~~L~~L~L~~c~~l~~LP~~i-~~L~~L~~L~i~ 646 (693)
..|++.++..+..+ ..|++|++++|.+..+ .....+|+.|++.+++.++.+|... ..+++|++|+++
T Consensus 131 ~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT
T ss_pred hhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcC
Confidence 66666665544322 2366667777666554 3344566777776666777776653 567777777777
Q ss_pred ccccccccccc-ccccceeecccccccc
Q 036977 647 NCPDMETFISN-STSVLHMTADNKEAQK 673 (693)
Q Consensus 647 ~C~~L~~lp~~-~~~l~~l~~~~~~~~~ 673 (693)
++ +|+++|.. +.+|.+|++.++...+
T Consensus 211 ~N-~l~~lp~~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 211 RT-RIHSLPSYGLENLKKLRARSTYNLK 237 (350)
T ss_dssp TS-CCCCCCSSSCTTCCEEECTTCTTCC
T ss_pred CC-CcCccChhhhccchHhhhccCCCcC
Confidence 66 46666653 4566666666655433
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.41 E-value=1.4e-07 Score=108.18 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=77.8
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC------CccccccceeccCCCCcccc---cCCCCCcCEee
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS------LEEVLHLEELNAKEEHIGPL---FPRLSWLRLID 620 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~------l~~l~~L~~L~l~~~~l~~~---~~~L~~L~~L~ 620 (693)
+++|+.|.+.++.- ..+|..+..+++|++|+|+++.- +..+++|++|+|++|.+..+ +++|++|++|+
T Consensus 223 l~~L~~L~Ls~n~l---~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 223 DQLWHALDLSNLQI---FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCEEECTTSCC---SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred CCCCcEEECCCCCC---CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 34667777766543 24566777899999999988742 33677899999999776654 78889999999
Q ss_pred cCCCcCcccccccccCCCCcCEEecccccccccc
Q 036977 621 LPKLKRFYNFTGNIIELPELRYLTIENCPDMETF 654 (693)
Q Consensus 621 L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~l 654 (693)
|++ +.+..+|.+++.|++|++|++++++ |...
T Consensus 300 L~~-N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~ 331 (727)
T 4b8c_D 300 FFD-NMVTTLPWEFGNLCNLQFLGVEGNP-LEKQ 331 (727)
T ss_dssp CCS-SCCCCCCSSTTSCTTCCCEECTTSC-CCSH
T ss_pred CCC-CCCCccChhhhcCCCccEEeCCCCc-cCCC
Confidence 998 5688999999999999999999985 5543
No 119
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=7.2e-07 Score=103.59 Aligned_cols=77 Identities=10% Similarity=0.065 Sum_probs=41.6
Q ss_pred ccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccccCC--------CCcCEEecccccccccccccc----
Q 036977 595 HLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNIIEL--------PELRYLTIENCPDMETFISNS---- 658 (693)
Q Consensus 595 ~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i~~L--------~~L~~L~i~~C~~L~~lp~~~---- 658 (693)
+|++|++++|.+..+ +..+++|+.|+|++ +.+..+|..+... ++|++|++++| ++..+|...
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSN-NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS-CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCC-CcCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhcc
Confidence 455555555444433 23556666666666 3455666554432 26666666666 455666543
Q ss_pred -cccceeecccccccc
Q 036977 659 -TSVLHMTADNKEAQK 673 (693)
Q Consensus 659 -~~l~~l~~~~~~~~~ 673 (693)
.+|+.|.++++.-..
T Consensus 752 l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS 767 (876)
T ss_dssp CTTCCEEECCSSCCSS
T ss_pred CCCcCEEEeCCCCCCc
Confidence 345556665554443
No 120
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.39 E-value=1.5e-06 Score=97.85 Aligned_cols=157 Identities=13% Similarity=0.148 Sum_probs=99.2
Q ss_pred hhcccccccccccCcccccccc---CCCcccccCC-----CCCCcc---cccCcceeeecCCCCCCcCCCchhhcCCCCC
Q 036977 511 TIQKCYEEMIGFRDIKDLQLSH---FPRLQEIWHG-----QALPVS---FFNNLRELVVDDCTNMSSAIPANLLRCLNNL 579 (693)
Q Consensus 511 ~~~~l~~l~~~~~~l~~l~~~~---~~~L~~~~~~-----~~~~~~---~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L 579 (693)
.+.+++.|.+.++.+..++... +++|+...-. ...+.. .+++|+.|.+.+|.-.. .++..+..+++|
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L 451 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI--SSEQLFDGLPAL 451 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT--TCTTTTTTCTTC
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC--cCHHHHhCCCCC
Confidence 3456667777777665543322 4444422111 111222 24677777777765432 345677788888
Q ss_pred CEEEecCCCC----------CccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccccCCCCcCEEec
Q 036977 580 RYLEVRNCDS----------LEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTI 645 (693)
Q Consensus 580 ~~L~l~~c~~----------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i 645 (693)
++|++++|.- +..+++|++|++++|.+... ++.+++|+.|+|+++.--...|..+..+++| +|++
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 8888887742 33567888888888776544 6778888888888854333446677788888 8888
Q ss_pred cccccccccccc----ccccceeecccccc
Q 036977 646 ENCPDMETFISN----STSVLHMTADNKEA 671 (693)
Q Consensus 646 ~~C~~L~~lp~~----~~~l~~l~~~~~~~ 671 (693)
++| ++..+|+. ..+|+.|.+.+++-
T Consensus 531 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 531 ASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred cCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 888 46666543 25677787777554
No 121
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.37 E-value=1.2e-06 Score=96.67 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=55.8
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc-cCCCCCcCEeecC
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL-FPRLSWLRLIDLP 622 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~-~~~L~~L~~L~L~ 622 (693)
++|+.|++.+|.-.. .++..+..+++|++|++++|.- +..+++|++|++++|.+..+ ...+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISE--LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCC--CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECC
T ss_pred ccccEEECCCCcccc--cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEecc
Confidence 566666666654322 2345666666666666666531 22456666666666655544 1256667777776
Q ss_pred CCcCccc--ccccccCCCCcCEEecccc
Q 036977 623 KLKRFYN--FTGNIIELPELRYLTIENC 648 (693)
Q Consensus 623 ~c~~l~~--LP~~i~~L~~L~~L~i~~C 648 (693)
++ .+.. +|..++.+++|++|++++|
T Consensus 99 ~N-~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 99 FN-AFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp SS-CCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred CC-ccccccchhhhccCCcceEEEecCc
Confidence 63 3443 4566666677777776665
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.36 E-value=2.1e-06 Score=93.40 Aligned_cols=158 Identities=15% Similarity=0.209 Sum_probs=114.2
Q ss_pred hhhcccccccccccCcccccc-ccCCCcccccCC----CCC-CcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEE
Q 036977 510 STIQKCYEEMIGFRDIKDLQL-SHFPRLQEIWHG----QAL-PVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLE 583 (693)
Q Consensus 510 ~~~~~l~~l~~~~~~l~~l~~-~~~~~L~~~~~~----~~~-~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~ 583 (693)
..+.+++.|.+.++.+..++. ..+++|+...-. ..+ +...+++|+.|.+.+|.-.. .+. +..+++|++|+
T Consensus 218 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~---~~~-~~~l~~L~~L~ 293 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN---ISP-LAGLTALTNLE 293 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC---CGG-GTTCTTCSEEE
T ss_pred cccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc---ccc-ccCCCccCeEE
Confidence 346778888999888876642 236666532211 122 23346789999998875332 233 78899999999
Q ss_pred ecCCCC-----CccccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc
Q 036977 584 VRNCDS-----LEEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 584 l~~c~~-----l~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
+++|.- +..+++|++|++++|.+... ++.+++|+.|++++| .+..+| .+..+++|++|++++|. +..+++
T Consensus 294 L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~ 370 (466)
T 1o6v_A 294 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ-ISDLTP 370 (466)
T ss_dssp CCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC-CCBCGG
T ss_pred cCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc-cCccch
Confidence 988852 34678999999999887766 678999999999996 577764 68899999999999995 566654
Q ss_pred --cccccceeeccccccccc
Q 036977 657 --NSTSVLHMTADNKEAQKL 674 (693)
Q Consensus 657 --~~~~l~~l~~~~~~~~~~ 674 (693)
...+|+.|.+.+|+-...
T Consensus 371 ~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 371 LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GTTCTTCCEEECCCEEEECC
T ss_pred hhcCCCCCEEeccCCcccCC
Confidence 236677888888766553
No 123
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.36 E-value=1.1e-06 Score=103.11 Aligned_cols=121 Identities=21% Similarity=0.295 Sum_probs=72.0
Q ss_pred hcccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC---
Q 036977 512 IQKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD--- 588 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~--- 588 (693)
+.+++.|.+++|.++.+....+.+ +++|++|++.+|..... ..|..+.+|++|++|++++|.
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~--------------l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPF--------------LEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSS--------------CCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcc--------------cccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcc
Confidence 456777888887777654443332 34666666666643321 235566667777777776654
Q ss_pred ----CCccccccceeccCCCCcccc------cCCCCCcCEeecCCCcCccccc--ccccCCCCcCEEecccc
Q 036977 589 ----SLEEVLHLEELNAKEEHIGPL------FPRLSWLRLIDLPKLKRFYNFT--GNIIELPELRYLTIENC 648 (693)
Q Consensus 589 ----~l~~l~~L~~L~l~~~~l~~~------~~~L~~L~~L~L~~c~~l~~LP--~~i~~L~~L~~L~i~~C 648 (693)
.+..+++|++|++++|.+... ++++++|++|+|+++ .+..++ ..++++++|++|+++++
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC
Confidence 223566677777766655431 566677777777763 344442 34566777777777665
No 124
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.36 E-value=1.2e-06 Score=95.01 Aligned_cols=120 Identities=15% Similarity=0.281 Sum_probs=87.6
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-------CCccccccceeccCCCCcccc----cCCCCCcCEe
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-------SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLI 619 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L 619 (693)
++|+.|.+.++.-.. .++..+..+++|++|++++|. .+..+++|++|++++|.+..+ ++.+++|++|
T Consensus 275 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccccc--cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 578888888765443 356678888888888888775 233667888888888776554 7788888888
Q ss_pred ecCCCcCcccc-cccccCCCCcCEEeccccccccccccc----ccccceeeccccccccc
Q 036977 620 DLPKLKRFYNF-TGNIIELPELRYLTIENCPDMETFISN----STSVLHMTADNKEAQKL 674 (693)
Q Consensus 620 ~L~~c~~l~~L-P~~i~~L~~L~~L~i~~C~~L~~lp~~----~~~l~~l~~~~~~~~~~ 674 (693)
+|++| .+..+ |..+..+++|++|++++| ++..+|.. ..+|+.|.+.+++-...
T Consensus 353 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 353 DLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp ECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccC
Confidence 88884 46666 667788888888888887 57777763 35677777777554433
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.36 E-value=6.1e-07 Score=83.56 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=64.7
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCC-CCCCEEEecCCC-----CCccccccceeccCCCCcccc----cCCCCCcCEee
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCL-NNLRYLEVRNCD-----SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLID 620 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L-~~L~~L~l~~c~-----~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~ 620 (693)
++|+.|.+.+|.- .. .+. +..+ ++|++|+++++. .+..+++|++|++++|.+..+ ++.+++|++|+
T Consensus 19 ~~L~~L~l~~n~l-~~--i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKI-PV--IEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCC-CS--CCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCC-ch--hHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 4666666666532 21 222 3333 367777776663 333566677777777666544 36678888888
Q ss_pred cCCCcCcccccc--cccCCCCcCEEeccccccccccccc
Q 036977 621 LPKLKRFYNFTG--NIIELPELRYLTIENCPDMETFISN 657 (693)
Q Consensus 621 L~~c~~l~~LP~--~i~~L~~L~~L~i~~C~~L~~lp~~ 657 (693)
+++ +.+..+|. .+..+++|++|++++|+ +..+|..
T Consensus 95 L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~ 131 (176)
T 1a9n_A 95 LTN-NSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHY 131 (176)
T ss_dssp CCS-CCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTH
T ss_pred CCC-CcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhH
Confidence 887 45777776 67788888888888875 5666663
No 126
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.36 E-value=2.2e-06 Score=96.56 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=94.3
Q ss_pred hcccccccccccCccccccc---cCCCcccccCC-----CCCCcc---cccCcceeeecCCCCCCcCCCchhhcCCCCCC
Q 036977 512 IQKCYEEMIGFRDIKDLQLS---HFPRLQEIWHG-----QALPVS---FFNNLRELVVDDCTNMSSAIPANLLRCLNNLR 580 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~---~~~~L~~~~~~-----~~~~~~---~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~ 580 (693)
+.+++.|.+.++.+..++.. .+++|+...-. ..++.. .+++|+.|.+.++.-......+..+..+++|+
T Consensus 300 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 379 (606)
T 3t6q_A 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379 (606)
T ss_dssp CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCC
Confidence 45566666776666554322 24555422111 122322 24566666666654332111145667777888
Q ss_pred EEEecCCC-------CCccccccceeccCCCCcccc-----cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccc
Q 036977 581 YLEVRNCD-------SLEEVLHLEELNAKEEHIGPL-----FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENC 648 (693)
Q Consensus 581 ~L~l~~c~-------~l~~l~~L~~L~l~~~~l~~~-----~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C 648 (693)
+|++++|. .+..+++|++|+++++.+... +..+++|+.|++++|.--...|..+..+++|++|++++|
T Consensus 380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp EEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence 88887764 233567788888877665433 667788888888875433334556778888888888888
Q ss_pred ccccc--cc-----ccccccceeeccccccccc
Q 036977 649 PDMET--FI-----SNSTSVLHMTADNKEAQKL 674 (693)
Q Consensus 649 ~~L~~--lp-----~~~~~l~~l~~~~~~~~~~ 674 (693)
. +.. +| ....+|+.|.+++|.-...
T Consensus 460 ~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 460 H-FPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp B-CGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred C-CCccccccchhhccCCCccEEECCCCccCcc
Confidence 4 333 12 1235677777777654433
No 127
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.35 E-value=1.6e-06 Score=87.68 Aligned_cols=161 Identities=20% Similarity=0.176 Sum_probs=93.3
Q ss_pred CCccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 156 DNEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
....++|.+..++.+.+.+.. .....+.|+|++|+|||+||+.+++..... .+.+..+.-..
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~~ 89 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELVK 89 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHHH
Confidence 456789999999999887742 345679999999999999999999886432 33333332111
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCc--cccCCCCC----Cccccccc----cc
Q 036977 223 PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLEL--DAVGIPSG----DVDEKDRE----DD 292 (693)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~--~~l~~~~~----~~~~~~~~----~~ 292 (693)
. .. .........+........+.+|++||++....- ......-. .+..++.. ..
T Consensus 90 ~--------------~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 K--------------FI--GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp C--------------ST--THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred h--------------cc--chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 00 111222333333333446789999999754100 00000000 00000000 02
Q ss_pred CCCeEEEEecCChhhhhhh-c---CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 293 QRRCTIILTSRSRDLLCID-M---NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
..+..||.||......... . .....+.+...+.++..+++...+.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~ 202 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTR 202 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHh
Confidence 3467788888766433111 1 1224799999999999999988765
No 128
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.35 E-value=1.4e-06 Score=90.09 Aligned_cols=52 Identities=6% Similarity=0.210 Sum_probs=25.0
Q ss_pred CcCEeecCCCcCcccccccccCCCCcCEEecccccccccccc-cc---cccceeeccccc
Q 036977 615 WLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS-NS---TSVLHMTADNKE 670 (693)
Q Consensus 615 ~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~-~~---~~l~~l~~~~~~ 670 (693)
+|++|++++ ..+..+|..+. ++|++|+++++ .+..+|. .+ .+|+.|.+.++.
T Consensus 173 ~L~~L~l~~-n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 173 KLNYLRISE-AKLTGIPKDLP--ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp CCSCCBCCS-SBCSSCCSSSC--SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred ccCEEECcC-CCCCccCcccc--CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCc
Confidence 444444444 23444454432 55666666665 3444442 22 345555555543
No 129
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.35 E-value=1.8e-05 Score=78.57 Aligned_cols=162 Identities=13% Similarity=0.091 Sum_probs=86.5
Q ss_pred CCccccchHHHHHHHHHHHh---c---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 156 DNEAFDSRMKVFQDVMEALK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
....++|.+..++.+.+.+. . ...+.+.|+|++|+|||++|+.+++..... .+.++.+.-.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHhh
Confidence 34567888888777765542 1 234568899999999999999999876432 344444432110
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcccc-----CCC-CC-Cccccccc----cc
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAV-----GIP-SG-DVDEKDRE----DD 292 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l-----~~~-~~-~~~~~~~~----~~ 292 (693)
.. .........+........+.+|++||++....-..- ... .. .+..++.. ..
T Consensus 79 --------------~~--~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 79 --------------IG--GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp --------------ST--THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred --------------cc--ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 00 001112222222233235799999999865110000 000 00 00001100 02
Q ss_pred CCCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhhh
Q 036977 293 QRRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHLE 338 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~ 338 (693)
..+..||.||.......... .....+.+...+.++..+++...+..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 24567777776654321111 12357889999999999999888753
No 130
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.34 E-value=2.3e-06 Score=96.84 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=40.2
Q ss_pred cccccceeccCCCCcccc---cCCCCCcCEeecCC------CcCcccccccccCCCCcCEEecccccccccccccc-ccc
Q 036977 592 EVLHLEELNAKEEHIGPL---FPRLSWLRLIDLPK------LKRFYNFTGNIIELPELRYLTIENCPDMETFISNS-TSV 661 (693)
Q Consensus 592 ~l~~L~~L~l~~~~l~~~---~~~L~~L~~L~L~~------c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~~-~~l 661 (693)
.+++|++|++++|.+..+ +..+++|+.|+|++ +.-...+|..+..+++|++|++++|. +..+|... .+|
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~~~L 589 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKITPNI 589 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCCTTC
T ss_pred cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHhCcC
Confidence 344555555555443332 44555555555532 22233455555566666666666653 45555532 456
Q ss_pred ceeeccccc
Q 036977 662 LHMTADNKE 670 (693)
Q Consensus 662 ~~l~~~~~~ 670 (693)
+.|.+++++
T Consensus 590 ~~L~Ls~N~ 598 (636)
T 4eco_A 590 SVLDIKDNP 598 (636)
T ss_dssp CEEECCSCT
T ss_pred CEEECcCCC
Confidence 666665554
No 131
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.33 E-value=1.6e-06 Score=100.60 Aligned_cols=159 Identities=11% Similarity=0.045 Sum_probs=96.2
Q ss_pred hcccccccccccCccc-cccccCCCcccccCC----C-CCCc-ccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEe
Q 036977 512 IQKCYEEMIGFRDIKD-LQLSHFPRLQEIWHG----Q-ALPV-SFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEV 584 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~-l~~~~~~~L~~~~~~----~-~~~~-~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l 584 (693)
+.+++.|.+.+|.+.. .+...+++|+...-. . .+|. ..+++|++|.+.+|.-.. ..|..+..+++|++|++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG--DFSRAISTCTELKLLNI 254 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS--CHHHHTTTCSSCCEEEC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC--cccHHHhcCCCCCEEEC
Confidence 4456666666666542 222335555422111 1 1221 224567777777665332 34667777888888888
Q ss_pred cCCCCCc-----cccccceeccCCCCcc----cccCC-CCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccc
Q 036977 585 RNCDSLE-----EVLHLEELNAKEEHIG----PLFPR-LSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETF 654 (693)
Q Consensus 585 ~~c~~l~-----~l~~L~~L~l~~~~l~----~~~~~-L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~l 654 (693)
++|.... .+++|++|++++|.+. ..+.. +++|++|+|++|.--..+|..++.+++|++|++++|.-...+
T Consensus 255 s~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 255 SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp CSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 7775321 4667888888876554 33444 388888888886543467888888888888888888533366
Q ss_pred ccc----ccccceeeccccccc
Q 036977 655 ISN----STSVLHMTADNKEAQ 672 (693)
Q Consensus 655 p~~----~~~l~~l~~~~~~~~ 672 (693)
|.. ..+|+.|.+.+|.-.
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEE
T ss_pred CHHHHhcCCCCCEEeCcCCccC
Confidence 653 355777777776544
No 132
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.33 E-value=9.2e-07 Score=102.57 Aligned_cols=97 Identities=20% Similarity=0.052 Sum_probs=43.7
Q ss_pred cCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCC-------ccccccceeccCCCCccc----ccCCCCCcCEe
Q 036977 551 NNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSL-------EEVLHLEELNAKEEHIGP----LFPRLSWLRLI 619 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l-------~~l~~L~~L~l~~~~l~~----~~~~L~~L~~L 619 (693)
++|+.|++.+|.-.. ..|..+..+++|++|++++|... ..+++|++|++++|.+.. .++++++|++|
T Consensus 418 ~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 418 SELVSLHLSFNYLSG--TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp TTCCEEECCSSEEES--CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCCCEEECcCCcccC--cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 344455544443221 23444455555555555444321 133445555555543321 24445555555
Q ss_pred ecCCCcCcccccccccCCCCcCEEeccccc
Q 036977 620 DLPKLKRFYNFTGNIIELPELRYLTIENCP 649 (693)
Q Consensus 620 ~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~ 649 (693)
+|++|.--..+|..++.+++|++|++++|.
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 555533222445555555555555555553
No 133
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.33 E-value=1.2e-05 Score=82.79 Aligned_cols=176 Identities=15% Similarity=0.126 Sum_probs=102.8
Q ss_pred CCCccccchHHHHHHHHHHHhc-----CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKD-----DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 229 (693)
.....|+|++..+..+..++.. .....+.|+|++|+|||++|+.+++.... ..++++.+......++..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~- 82 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAA- 82 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHH-
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHH-
Confidence 3456799999999988887752 34467889999999999999999987642 234454443322222211
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhc--CCcEEEEEeCCCCccC--ccccCCCCCCc-----------ccccccccCC
Q 036977 230 LASDLGMKFDLNDSIHHRASRLRERLKQ--EKRVLIILDNIWTKLE--LDAVGIPSGDV-----------DEKDREDDQR 294 (693)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~~--~k~~LlVlDdv~~~~~--~~~l~~~~~~~-----------~~~~~~~~~~ 294 (693)
.+.. .++.+|++||++.... ...+...+... ...++ ...+
T Consensus 83 ------------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~-~~~~ 137 (324)
T 1hqc_A 83 ------------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIR-LELP 137 (324)
T ss_dssp ------------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEE-EECC
T ss_pred ------------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccc-cCCC
Confidence 1111 2457888999876531 11110000000 00000 0112
Q ss_pred CeEEEEecCChhhhhh-hcC-CCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcC
Q 036977 295 RCTIILTSRSRDLLCI-DMN-SQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLH 372 (693)
Q Consensus 295 ~~~IivTtR~~~v~~~-~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~ 372 (693)
+.++|.||........ ... ....+.+.+++.++..+++...+... ...-..+....+++.++
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~----------------~~~~~~~~~~~l~~~~~ 201 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLL----------------GVRITEEAALEIGRRSR 201 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTT----------------TCCCCHHHHHHHHHHSC
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhc----------------CCCCCHHHHHHHHHHcc
Confidence 4556766665432111 111 23589999999999999988876532 11222466778888899
Q ss_pred CCccc
Q 036977 373 SLKLE 377 (693)
Q Consensus 373 glPLa 377 (693)
|.|-.
T Consensus 202 G~~r~ 206 (324)
T 1hqc_A 202 GTMRV 206 (324)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 98865
No 134
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=9e-07 Score=92.43 Aligned_cols=193 Identities=12% Similarity=0.081 Sum_probs=109.4
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCC-EEEEEEecCCCChHHHHHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLID-KVVMAEVTQNPDPQKIQDKLAS 232 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~ 232 (693)
|.....++|+++.++.+..++..+..+.+.++|++|+||||+|+.+++.......+. .++.++.+.......+ .+.+.
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 111 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVK 111 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHH
Confidence 344567899999999999999876555589999999999999999998854211111 2344444443333322 22221
Q ss_pred HhC-CCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--ccccCCCCCCcccccccccCCCeEEEEecCChhh-h
Q 036977 233 DLG-MKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--LDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL-L 308 (693)
Q Consensus 233 ~l~-~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v-~ 308 (693)
.+. ......... ........++-++++|+++.... .+.+...+.. .....++|++|....- .
T Consensus 112 ~~~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~--------~~~~~~~il~~~~~~~l~ 177 (353)
T 1sxj_D 112 NFARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMET--------YSGVTRFCLICNYVTRII 177 (353)
T ss_dssp HHHHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHH--------TTTTEEEEEEESCGGGSC
T ss_pred HHhhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHh--------cCCCceEEEEeCchhhCc
Confidence 111 000000000 00011112457999999875521 2222111110 2345667777755432 1
Q ss_pred hhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 309 CIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 309 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
.........+.+.+++.++....+...+... ...-..+....|++.++|.|-.
T Consensus 178 ~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~----------------~~~i~~~~l~~l~~~~~G~~r~ 230 (353)
T 1sxj_D 178 DPLASQCSKFRFKALDASNAIDRLRFISEQE----------------NVKCDDGVLERILDISAGDLRR 230 (353)
T ss_dssp HHHHHHSEEEECCCCCHHHHHHHHHHHHHTT----------------TCCCCHHHHHHHHHHTSSCHHH
T ss_pred chhhccCceEEeCCCCHHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHHcCCCHHH
Confidence 1111223488999999999999988876422 1112245677888888887764
No 135
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.31 E-value=6.1e-06 Score=88.43 Aligned_cols=150 Identities=17% Similarity=0.249 Sum_probs=90.3
Q ss_pred CCCCccccchHHHH---HHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHH
Q 036977 154 GKDNEAFDSRMKVF---QDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKL 230 (693)
Q Consensus 154 ~~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 230 (693)
|.....++|.+..+ ..+...+..+....+.|+|++|+||||+|+.+++..... | ..++.. ......+ +.+
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~--f---~~l~a~-~~~~~~i-r~~ 94 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD--V---ERISAV-TSGVKEI-REA 94 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE--E---EEEETT-TCCHHHH-HHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC--e---EEEEec-cCCHHHH-HHH
Confidence 34567789999998 788888887888889999999999999999999886432 2 122221 1222221 111
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEE-ecCChh-
Q 036977 231 ASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIIL-TSRSRD- 306 (693)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~Iiv-TtR~~~- 306 (693)
+ .........+++.+|++|+++... ..+.+...+ ......+|. ||.+..
T Consensus 95 ~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~l----------e~~~v~lI~att~n~~~ 147 (447)
T 3pvs_A 95 I-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHI----------EDGTITFIGATTENPSF 147 (447)
T ss_dssp H-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHH----------HTTSCEEEEEESSCGGG
T ss_pred H-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHH----------hcCceEEEecCCCCccc
Confidence 1 111112222367999999998652 222221111 112233443 544442
Q ss_pred -hhhhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 307 -LLCIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 307 -v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
+.........++.+.+++.++..+++.+.+.
T Consensus 148 ~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 148 ELNSALLSRARVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp SSCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccCHHHhCceeEEeeCCcCHHHHHHHHHHHHH
Confidence 1111223445889999999999999988765
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=2.1e-06 Score=89.68 Aligned_cols=192 Identities=11% Similarity=0.052 Sum_probs=104.4
Q ss_pred CCCccccchHHHHHHHHHHH-hcCCceEEEEEecCCCcHHHHHHHHHHHhhccC----CCCE------------------
Q 036977 155 KDNEAFDSRMKVFQDVMEAL-KDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDK----LIDK------------------ 211 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~------------------ 211 (693)
.....++|++..++.+..++ ..++.+.+.|+|++|+||||+|+.++....... .++.
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 44567899999999999988 655544499999999999999999998642110 0110
Q ss_pred --EEEEEecCCC-ChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--ccccCCCCCCccc
Q 036977 212 --VVMAEVTQNP-DPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--LDAVGIPSGDVDE 286 (693)
Q Consensus 212 --~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~ 286 (693)
.+.+..+... ......+++++.+...... .... .+.. +.. ++-++|+|+++..+. .+.+...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls~-l~~-~~~vlilDE~~~L~~~~~~~L~~~l----- 158 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKDG-LAH-RYKCVIINEANSLTKDAQAALRRTM----- 158 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHH-----
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cccc-cCC-CCeEEEEeCccccCHHHHHHHHHHH-----
Confidence 1111111110 0001223333332211110 0000 0000 122 567999999987421 11121111
Q ss_pred ccccccCCCeEEEEecCChhh-hhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCch-hhHH
Q 036977 287 KDREDDQRRCTIILTSRSRDL-LCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEG-KLIE 364 (693)
Q Consensus 287 ~~~~~~~~~~~IivTtR~~~v-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 364 (693)
.. ...++.+|++|.+..- ..........+.+.+++.++..+.+...+... ...-. .+..
T Consensus 159 --e~-~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~~~l 219 (354)
T 1sxj_E 159 --EK-YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNE----------------RIQLETKDIL 219 (354)
T ss_dssp --HH-STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH----------------TCEECCSHHH
T ss_pred --Hh-hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHc----------------CCCCCcHHHH
Confidence 11 2346778888876532 22222334689999999999999998877532 11111 3566
Q ss_pred HHHhhhcCCCccc
Q 036977 365 LKVFPKLHSLKLE 377 (693)
Q Consensus 365 ~~I~~~c~glPLa 377 (693)
..|++.++|-+-.
T Consensus 220 ~~i~~~~~G~~r~ 232 (354)
T 1sxj_E 220 KRIAQASNGNLRV 232 (354)
T ss_dssp HHHHHHHTTCHHH
T ss_pred HHHHHHcCCCHHH
Confidence 7788888887653
No 137
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.30 E-value=2.8e-06 Score=94.79 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=56.4
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-------CccccccceeccCCCCcccc-cCCCCCcCEeec
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL-FPRLSWLRLIDL 621 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~-~~~L~~L~~L~L 621 (693)
+++|+.|.+.++.-.. .++..+..+++|++|+++++.- +..+++|++|++++|.+..+ ...+++|++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L 128 (562)
T 3a79_B 51 PPRTKALSLSQNSISE--LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDL 128 (562)
T ss_dssp CTTCCEEECCSSCCCC--CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEEC
T ss_pred CCCcCEEECCCCCccc--cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEEC
Confidence 3566666666654322 3345666666677776666531 22456666666666655544 225666777777
Q ss_pred CCCcCccccc--ccccCCCCcCEEecccc
Q 036977 622 PKLKRFYNFT--GNIIELPELRYLTIENC 648 (693)
Q Consensus 622 ~~c~~l~~LP--~~i~~L~~L~~L~i~~C 648 (693)
++ +.+..+| ..++++++|++|+++++
T Consensus 129 s~-N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 129 SF-NDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CS-SCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred CC-CCccccCchHhhcccCcccEEecCCC
Confidence 66 3355543 55666777777777665
No 138
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.29 E-value=2.2e-06 Score=100.56 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=94.0
Q ss_pred CCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC--------CccccccceeccCCCCcccc----cC
Q 036977 544 ALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS--------LEEVLHLEELNAKEEHIGPL----FP 611 (693)
Q Consensus 544 ~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~--------l~~l~~L~~L~l~~~~l~~~----~~ 611 (693)
.+|. ..++++.|++.++.-.. ..+..+.++++|++|++++|.. +..+++|++|++++|.+..+ ++
T Consensus 18 ~vP~-lp~~l~~LdLs~N~i~~--i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 18 QVPQ-VLNTTERLLLSFNYIRT--VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp CCCS-SCTTCCEEEEESCCCCE--ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCC-CCCCcCEEECCCCcCCc--cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 3444 45799999999875332 3567899999999999999932 45788999999999877554 89
Q ss_pred CCCCcCEeecCCCcCccc-cccc--ccCCCCcCEEecccccccccccc--c---ccccceeecccccc
Q 036977 612 RLSWLRLIDLPKLKRFYN-FTGN--IIELPELRYLTIENCPDMETFIS--N---STSVLHMTADNKEA 671 (693)
Q Consensus 612 ~L~~L~~L~L~~c~~l~~-LP~~--i~~L~~L~~L~i~~C~~L~~lp~--~---~~~l~~l~~~~~~~ 671 (693)
++++|++|+|++|. +.. +|.. +.++++|++|++++|. +..++. . ..+|+.|.+.++.-
T Consensus 95 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 95 GLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp SCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcC
Confidence 99999999999964 553 5665 8899999999999984 666532 2 35566777766543
No 139
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=5.8e-06 Score=90.79 Aligned_cols=193 Identities=10% Similarity=0.011 Sum_probs=106.5
Q ss_pred CCCCCccccchHHHHHHHHHHHhc-----------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEE
Q 036977 153 DGKDNEAFDSRMKVFQDVMEALKD-----------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMA 215 (693)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 215 (693)
.|.....++|++..++.+.+++.. +..+.+.|+|++|+||||+|+.+++... + .++.+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~i 108 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQ 108 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEE
Confidence 344567899999999999999864 1347899999999999999999998863 2 34555
Q ss_pred EecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCC
Q 036977 216 EVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRR 295 (693)
Q Consensus 216 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~ 295 (693)
+.+....... ....+...........-...... ......++.+|++|+++....-.. .. +..+.......+
T Consensus 109 n~s~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~vliIDEid~l~~~~~--~~---l~~L~~~l~~~~ 179 (516)
T 1sxj_A 109 NASDVRSKTL-LNAGVKNALDNMSVVGYFKHNEE---AQNLNGKHFVIIMDEVDGMSGGDR--GG---VGQLAQFCRKTS 179 (516)
T ss_dssp CTTSCCCHHH-HHHTGGGGTTBCCSTTTTTC-------CCSSTTSEEEEECSGGGCCTTST--TH---HHHHHHHHHHCS
T ss_pred eCCCcchHHH-HHHHHHHHhccccHHHHHhhhhh---hhhccCCCeEEEEECCCccchhhH--HH---HHHHHHHHHhcC
Confidence 6665544332 22222222111000000000000 001123678999999986532110 00 000001011123
Q ss_pred eEEEEecCChh--hhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCC
Q 036977 296 CTIILTSRSRD--LLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHS 373 (693)
Q Consensus 296 ~~IivTtR~~~--v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~g 373 (693)
..||+++.... ...........+.+.+++.++..+.+...+... ...-..+....|++.++|
T Consensus 180 ~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~----------------~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 180 TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIRE----------------KFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHH----------------TCCCCTTHHHHHHHHTTT
T ss_pred CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCC
Confidence 33555554432 111122334589999999999999998877533 111112456677888877
Q ss_pred Cc
Q 036977 374 LK 375 (693)
Q Consensus 374 lP 375 (693)
-+
T Consensus 244 di 245 (516)
T 1sxj_A 244 DI 245 (516)
T ss_dssp CH
T ss_pred cH
Confidence 43
No 140
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.29 E-value=3.9e-06 Score=92.88 Aligned_cols=140 Identities=16% Similarity=0.069 Sum_probs=101.6
Q ss_pred hcccccccccccCccccccccCCCcccc----cCCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCC
Q 036977 512 IQKCYEEMIGFRDIKDLQLSHFPRLQEI----WHGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNC 587 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~~~~L~~~----~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c 587 (693)
+.+++.|.+.+|.+..++. ...+|+.+ .....+|. .+++|+.|.+.++.- .. .|. .+++|++|++++|
T Consensus 99 l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~l-~~--lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLPE-LPALLEYINADNNQL-TM--LPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCC-SC--CCC---CCTTCCEEECCSS
T ss_pred cCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCCC-cCccccEEeCCCCcc-Cc--CCC---cCCCcCEEECCCC
Confidence 5678899999999988876 44455522 22334666 678999999988753 32 233 6889999999888
Q ss_pred CCCccc----cccceeccCCCCcccccCCCCCc-------CEeecCCCcCcccccccccCCCCcCEEecccccccccccc
Q 036977 588 DSLEEV----LHLEELNAKEEHIGPLFPRLSWL-------RLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 588 ~~l~~l----~~L~~L~l~~~~l~~~~~~L~~L-------~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
. +..+ ++|++|++++|.+..+..-..+| +.|+|++ +.+..+|.++..+++|++|++++++--...|.
T Consensus 171 ~-L~~lp~l~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 171 Q-LTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp C-CSCCCCCCTTCCEEECCSSCCSSCCCCC--------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred C-CCCcchhhCCCCEEECcCCCCCchhhHHHhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 5 4434 58999999998876552212267 9999998 67999999999999999999999974445565
Q ss_pred ccccc
Q 036977 657 NSTSV 661 (693)
Q Consensus 657 ~~~~l 661 (693)
.+..+
T Consensus 249 ~l~~l 253 (571)
T 3cvr_A 249 SLSQQ 253 (571)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55444
No 141
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.28 E-value=4e-06 Score=90.66 Aligned_cols=150 Identities=15% Similarity=0.065 Sum_probs=108.3
Q ss_pred cccccccccccCcccccc-ccCCCccccc----CCCCCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCC
Q 036977 513 QKCYEEMIGFRDIKDLQL-SHFPRLQEIW----HGQALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNC 587 (693)
Q Consensus 513 ~~l~~l~~~~~~l~~l~~-~~~~~L~~~~----~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c 587 (693)
.+++.|.+.+|.+..++. ..+++|+... ....+|.. +.+|++|.+.++.-.. .| .+..+++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~-~~~L~~L~L~~n~l~~---l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL-PPSLEFIAAGNNQLEE---LP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSS---CC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC-cccccEEECcCCcCCc---Cc-cccCCCCCCEEECCCC
Confidence 578888999998887762 1245554221 22344433 5689999998875332 33 5889999999999888
Q ss_pred CCCc---cccccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccccCCCCcCEEecccccccccccccccccc
Q 036977 588 DSLE---EVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENCPDMETFISNSTSVL 662 (693)
Q Consensus 588 ~~l~---~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C~~L~~lp~~~~~l~ 662 (693)
.--. ..++|++|++++|.+..+ ++.+++|++|++++ +.+..+|.. +++|++|++++| .+..+|..+.+|+
T Consensus 206 ~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~-N~l~~l~~~---~~~L~~L~l~~N-~l~~l~~~~~~L~ 280 (454)
T 1jl5_A 206 SLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN-NLLKTLPDL---PPSLEALNVRDN-YLTDLPELPQSLT 280 (454)
T ss_dssp CCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS-SCCSSCCSC---CTTCCEEECCSS-CCSCCCCCCTTCC
T ss_pred cCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCC-CcCCccccc---ccccCEEECCCC-cccccCcccCcCC
Confidence 5221 234799999999776655 78899999999998 568888864 478899999988 5788888778888
Q ss_pred eeeccccccc
Q 036977 663 HMTADNKEAQ 672 (693)
Q Consensus 663 ~l~~~~~~~~ 672 (693)
.|.+++|.-.
T Consensus 281 ~L~ls~N~l~ 290 (454)
T 1jl5_A 281 FLDVSENIFS 290 (454)
T ss_dssp EEECCSSCCS
T ss_pred EEECcCCccC
Confidence 8888776543
No 142
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=4.3e-06 Score=86.75 Aligned_cols=182 Identities=13% Similarity=0.093 Sum_probs=103.1
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHh
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDL 234 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 234 (693)
.....++|.+..++.+..++..++.+.+.++|++|+||||+|+.+++.......-..+..++.+.......+ ++.+..+
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~i-r~~i~~~ 100 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVV-RNQIKDF 100 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHH-HTHHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHH-HHHHHHH
Confidence 445667899999999998888776655899999999999999999998653211112333444333232222 1111111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCChh-hhhhh
Q 036977 235 GMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD-LLCID 311 (693)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~-v~~~~ 311 (693)
..... .+.. .+-++|+|+++... ..+.+...+.. ....+++|++|.... +....
T Consensus 101 ~~~~~--------------~~~~-~~~viiiDe~~~l~~~~~~~L~~~le~--------~~~~~~~il~~n~~~~i~~~i 157 (340)
T 1sxj_C 101 ASTRQ--------------IFSK-GFKLIILDEADAMTNAAQNALRRVIER--------YTKNTRFCVLANYAHKLTPAL 157 (340)
T ss_dssp HHBCC--------------SSSC-SCEEEEETTGGGSCHHHHHHHHHHHHH--------TTTTEEEEEEESCGGGSCHHH
T ss_pred Hhhcc--------------cCCC-CceEEEEeCCCCCCHHHHHHHHHHHhc--------CCCCeEEEEEecCccccchhH
Confidence 00000 0011 36789999987542 11222111100 234566777765543 21111
Q ss_pred cCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 312 MNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 312 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
......+.+.+++.++..+.+...+... ...-.......|++.++|-+-
T Consensus 158 ~sR~~~~~~~~l~~~~~~~~l~~~~~~~----------------~~~i~~~~~~~i~~~s~G~~r 206 (340)
T 1sxj_C 158 LSQCTRFRFQPLPQEAIERRIANVLVHE----------------KLKLSPNAEKALIELSNGDMR 206 (340)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHTT----------------TCCBCHHHHHHHHHHHTTCHH
T ss_pred HhhceeEeccCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHcCCCHH
Confidence 2234578999999999888887766321 111123456677888887654
No 143
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.26 E-value=9.5e-07 Score=86.63 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=98.6
Q ss_pred Cccccch---HHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHH
Q 036977 157 NEAFDSR---MKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASD 233 (693)
Q Consensus 157 ~~~~~gR---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 233 (693)
...|+|+ +..++.+..+......+.+.|+|++|+||||+|+.+++..... ...+.|++++..... +.+.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~~~ 98 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------STAL 98 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CGGG
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HHHH
Confidence 3456653 4666677776665567889999999999999999999987654 345667766542110 0000
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC----ccccCCCCCCcccccccccCCC-eEEEEecCChhh-
Q 036977 234 LGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE----LDAVGIPSGDVDEKDREDDQRR-CTIILTSRSRDL- 307 (693)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~----~~~l~~~~~~~~~~~~~~~~~~-~~IivTtR~~~v- 307 (693)
.+.+ . ++.+||+||++.... .+.+. ..+......+ .++|+||+...-
T Consensus 99 ------------------~~~~-~-~~~vliiDe~~~~~~~~~~~~~l~-------~~l~~~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 99 ------------------LEGL-E-QFDLICIDDVDAVAGHPLWEEAIF-------DLYNRVAEQKRGSLIVSASASPME 151 (242)
T ss_dssp ------------------GTTG-G-GSSEEEEETGGGGTTCHHHHHHHH-------HHHHHHHHHCSCEEEEEESSCTTT
T ss_pred ------------------HHhc-c-CCCEEEEeccccccCCHHHHHHHH-------HHHHHHHHcCCCeEEEEcCCCHHH
Confidence 0011 1 457999999876532 11111 1111111122 247777764321
Q ss_pred h-------hhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCcc
Q 036977 308 L-------CIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKL 376 (693)
Q Consensus 308 ~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 376 (693)
. .........+.+.+++.++..+++...+... ...-..+....+++.++|.+-
T Consensus 152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~l~~~~~g~~r 211 (242)
T 3bos_A 152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMR----------------GLQLPEDVGRFLLNRMARDLR 211 (242)
T ss_dssp TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHT----------------TCCCCHHHHHHHHHHTTTCHH
T ss_pred HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHccCCHH
Confidence 0 0011122689999999999999998877532 111224566677777777553
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.26 E-value=8.8e-07 Score=101.64 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=80.8
Q ss_pred CCchhhcCCCCCCEEEecCCCCC------ccccccceeccCCCCcccc---cCCCCCcCEeecCCCcCcccccccccCCC
Q 036977 568 IPANLLRCLNNLRYLEVRNCDSL------EEVLHLEELNAKEEHIGPL---FPRLSWLRLIDLPKLKRFYNFTGNIIELP 638 (693)
Q Consensus 568 ~~~~~l~~L~~L~~L~l~~c~~l------~~l~~L~~L~l~~~~l~~~---~~~L~~L~~L~L~~c~~l~~LP~~i~~L~ 638 (693)
.++..+..++.|+.|+|+++... ..+++|++|+|++|.+..+ +++|++|++|+|++ +.|..+|..++.|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChhhcCCC
Confidence 46778899999999999988632 2578899999999876644 88999999999999 56889999999999
Q ss_pred CcCEEeccccccccccccccc---ccceeecccccccc
Q 036977 639 ELRYLTIENCPDMETFISNST---SVLHMTADNKEAQK 673 (693)
Q Consensus 639 ~L~~L~i~~C~~L~~lp~~~~---~l~~l~~~~~~~~~ 673 (693)
+|++|++++| .|..+|..+. +|..|.++++.-..
T Consensus 294 ~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 294 QLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCC
Confidence 9999999999 6899998664 56666666665443
No 145
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.25 E-value=1.1e-05 Score=84.04 Aligned_cols=181 Identities=10% Similarity=0.015 Sum_probs=103.2
Q ss_pred CCccccchHHHHHHHHHHHh------------cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 156 DNEAFDSRMKVFQDVMEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
....++|.+..++.+.+.+. ....+.+.|+|++|+|||++|+.+++.... ..+.++.+.-...
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTSK 156 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCCS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhcc
Confidence 44668999999999888773 234678999999999999999999987532 2345555432210
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC-------------ccccCCCCCCccccccc
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE-------------LDAVGIPSGDVDEKDRE 290 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~~ 290 (693)
.. .........+.......++.+|+||+++.... ...+...+.. ...
T Consensus 157 --------------~~--g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~----~~~ 216 (357)
T 3d8b_A 157 --------------WV--GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG----ATT 216 (357)
T ss_dssp --------------ST--THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------
T ss_pred --------------cc--chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc----ccc
Confidence 00 11122223333333333679999999864311 0111000000 000
Q ss_pred ccCCCeEEEEecCChhhhh-hhc-CCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHh
Q 036977 291 DDQRRCTIILTSRSRDLLC-IDM-NSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVF 368 (693)
Q Consensus 291 ~~~~~~~IivTtR~~~v~~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 368 (693)
....+..||.||....... ... .....+.+...+.++..+++...+... ...-.......|+
T Consensus 217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~----------------~~~l~~~~l~~la 280 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKE----------------QCCLSEEEIEQIV 280 (357)
T ss_dssp -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTS----------------CBCCCHHHHHHHH
T ss_pred cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhc----------------CCCccHHHHHHHH
Confidence 0223556676776543221 111 223578899999999999988776432 1111234567788
Q ss_pred hhcCCCccc
Q 036977 369 PKLHSLKLE 377 (693)
Q Consensus 369 ~~c~glPLa 377 (693)
+.+.|+.-+
T Consensus 281 ~~t~G~s~~ 289 (357)
T 3d8b_A 281 QQSDAFSGA 289 (357)
T ss_dssp HHTTTCCHH
T ss_pred HHcCCCCHH
Confidence 888886543
No 146
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.25 E-value=3.1e-05 Score=78.59 Aligned_cols=186 Identities=11% Similarity=0.030 Sum_probs=104.0
Q ss_pred CCCccccchHHHHHHHHHHHhc------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 155 KDNEAFDSRMKVFQDVMEALKD------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
.....++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.... ..+.++.+.-..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh
Confidence 3456789999999998887632 23578899999999999999999987642 233444433211
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCC-CCC-Cc-cccc---cc----cc
Q 036977 223 PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGI-PSG-DV-DEKD---RE----DD 292 (693)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~-~~~-~~-~~~~---~~----~~ 292 (693)
.. ..........+.......++.+|++|+++....-..-.. ... .. ..++ .. ..
T Consensus 93 --------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 --------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp --------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred --------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 012233333333333334679999999976521100000 000 00 0000 00 01
Q ss_pred CCCeEEEEecCChhhhhhh--cCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhh
Q 036977 293 QRRCTIILTSRSRDLLCID--MNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPK 370 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 370 (693)
+.+..||.||......... -.....+.+...+.++...++...+... ...-.......+++.
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~----------------~~~~~~~~~~~la~~ 220 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQ----------------GSPLDTEALRRLAKI 220 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGG----------------SCCSCHHHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhc----------------CCCCCHHHHHHHHHH
Confidence 2346677777765321110 1233578888888888888888776432 111123456778888
Q ss_pred cCCCccc
Q 036977 371 LHSLKLE 377 (693)
Q Consensus 371 c~glPLa 377 (693)
+.|.+-+
T Consensus 221 ~~g~~~~ 227 (297)
T 3b9p_A 221 TDGYSGS 227 (297)
T ss_dssp TTTCCHH
T ss_pred cCCCCHH
Confidence 8887753
No 147
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.24 E-value=2.5e-05 Score=80.13 Aligned_cols=186 Identities=14% Similarity=0.039 Sum_probs=103.8
Q ss_pred CCccccchHHHHHHHHHHHh------------cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 156 DNEAFDSRMKVFQDVMEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
....+.|.+..++.+.+.+. ....+-+.++|++|+|||+||+.+++.... ...+.++.+.-.+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~~- 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLVS- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHHh-
Confidence 34567888888888877662 123467899999999999999999998621 1233444432211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCC--CCC-cccccccc-----cCCC
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIP--SGD-VDEKDRED-----DQRR 295 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~--~~~-~~~~~~~~-----~~~~ 295 (693)
... ... +.....+.......++.+|++|+++....-..-... ... ..+++... ...+
T Consensus 85 -------------~~~-g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 -------------KWL-GES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp -------------SSC-CSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred -------------hhh-hHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 000 012 223333444444347899999999865210000000 000 00000000 2345
Q ss_pred eEEEEecCChhhhhhh--cCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCC
Q 036977 296 CTIILTSRSRDLLCID--MNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHS 373 (693)
Q Consensus 296 ~~IivTtR~~~v~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~g 373 (693)
..||.||......... -.....+.+...+.++..+++...+... ...........|++.+.|
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~----------------~~~l~~~~l~~la~~t~G 213 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTT----------------QNSLTEADFRELGRKTDG 213 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTC----------------CBCCCHHHHHHHHHTCTT
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcC----------------CCCCCHHHHHHHHHHcCC
Confidence 6666677654332111 1234678899999999999998876432 111123456778888888
Q ss_pred Cccc
Q 036977 374 LKLE 377 (693)
Q Consensus 374 lPLa 377 (693)
..-+
T Consensus 214 ~sga 217 (322)
T 1xwi_A 214 YSGA 217 (322)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 7654
No 148
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.23 E-value=1e-05 Score=83.21 Aligned_cols=185 Identities=13% Similarity=0.032 Sum_probs=104.4
Q ss_pred CCCccccchHHHHHHHHHHHh------------cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 155 KDNEAFDSRMKVFQDVMEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
.....++|.+..++.+.+.+. ....+-+.++|++|+|||+||+.+++..... .+.++.+.
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~~--- 86 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSSD--- 86 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHHH---
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchHH---
Confidence 345678999999999988772 1124678999999999999999999886432 23333321
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcccc--CCCCCC----ccccccc--ccCC
Q 036977 223 PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAV--GIPSGD----VDEKDRE--DDQR 294 (693)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l--~~~~~~----~~~~~~~--~~~~ 294 (693)
+. . ... ...+.....+.......++.+|++|+++....-..- ...... +...+.. ....
T Consensus 87 ---l~----~----~~~--g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 87 ---LV----S----KWM--GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp ---HH----T----TTG--GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred ---Hh----h----ccc--chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 10 0 000 112333334444444446789999999865210000 000000 0000000 0234
Q ss_pred CeEEEEecCChhhhhhh--cCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcC
Q 036977 295 RCTIILTSRSRDLLCID--MNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLH 372 (693)
Q Consensus 295 ~~~IivTtR~~~v~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~ 372 (693)
+..||.||......... -.....+.+...+.++..+++...+... ...........|++.+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~----------------~~~~~~~~l~~la~~t~ 217 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDT----------------PCVLTKEDYRTLGAMTE 217 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTC----------------CCCCCHHHHHHHHHTTT
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccC----------------CCCCCHHHHHHHHHHcC
Confidence 56677677765432110 1234578899999999999999877532 11112345667788777
Q ss_pred CCcc
Q 036977 373 SLKL 376 (693)
Q Consensus 373 glPL 376 (693)
|..-
T Consensus 218 g~sg 221 (322)
T 3eie_A 218 GYSG 221 (322)
T ss_dssp TCCH
T ss_pred CCCH
Confidence 7544
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.23 E-value=3.8e-06 Score=79.38 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=79.9
Q ss_pred CCCCCcCCCchhhcCCCCCCEEEecCCC------CCccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccc
Q 036977 561 CTNMSSAIPANLLRCLNNLRYLEVRNCD------SLEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNF 630 (693)
Q Consensus 561 c~~~~~~~~~~~l~~L~~L~~L~l~~c~------~l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~L 630 (693)
|.+......|..+ .++|++|+++++. .+..+++|++|++++|.+..+ |..+++|++|+|++ +.+..+
T Consensus 17 ~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i 93 (193)
T 2wfh_A 17 CSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRCI 93 (193)
T ss_dssp CTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBC
T ss_pred cCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-CccCEe
Confidence 4433333445544 3689999998874 234678999999999887766 78899999999999 678888
Q ss_pred cc-cccCCCCcCEEeccccccccccccc----ccccceeeccc
Q 036977 631 TG-NIIELPELRYLTIENCPDMETFISN----STSVLHMTADN 668 (693)
Q Consensus 631 P~-~i~~L~~L~~L~i~~C~~L~~lp~~----~~~l~~l~~~~ 668 (693)
|. .+..+++|++|+++++ ++..+|.. ..+|..|.+.+
T Consensus 94 ~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 94 PPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred CHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence 76 5789999999999998 68888874 35677777765
No 150
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.22 E-value=2.2e-06 Score=79.65 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=81.3
Q ss_pred hhcCCCCCCEEEecCCC-----CCcccc-ccceeccCCCCcccc--cCCCCCcCEeecCCCcCcccccccc-cCCCCcCE
Q 036977 572 LLRCLNNLRYLEVRNCD-----SLEEVL-HLEELNAKEEHIGPL--FPRLSWLRLIDLPKLKRFYNFTGNI-IELPELRY 642 (693)
Q Consensus 572 ~l~~L~~L~~L~l~~c~-----~l~~l~-~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~c~~l~~LP~~i-~~L~~L~~ 642 (693)
.+..+.+|++|++++|. .+..+. +|++|++++|.+..+ ++.+++|++|++++ +.+..+|.++ ..+++|++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCCE
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCC-CcccccCcchhhcCCCCCE
Confidence 35578889999998874 122333 899999999888766 88899999999999 5699999877 79999999
Q ss_pred Eecccccccccccc--cc---cccceeecccccccccc
Q 036977 643 LTIENCPDMETFIS--NS---TSVLHMTADNKEAQKLK 675 (693)
Q Consensus 643 L~i~~C~~L~~lp~--~~---~~l~~l~~~~~~~~~~~ 675 (693)
|++++| ++..+|. .+ .+|+.|.+.+++-....
T Consensus 93 L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 93 LILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp EECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred EECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence 999999 5788886 33 56788888887765443
No 151
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.22 E-value=6.4e-06 Score=88.41 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=92.1
Q ss_pred Ccccc-ch--HHHHHHHHHHHhcCC-ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHH
Q 036977 157 NEAFD-SR--MKVFQDVMEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLAS 232 (693)
Q Consensus 157 ~~~~~-gR--~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 232 (693)
...|+ |. ......+.......+ ...+.|+|++|+||||||+.+++.......-..+++++... +..++..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHH
Confidence 34555 53 333444444444333 67899999999999999999999875541112355655432 3344444
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC---c-cccCCCCCCcccccccccCCCeEEEEecCChhh-
Q 036977 233 DLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE---L-DAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL- 307 (693)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v- 307 (693)
.+... . ...+.+.+.. +..+|++||++.... . +.+ ...+......|..||+||....-
T Consensus 178 ~~~~~-----~----~~~~~~~~~~-~~~vL~IDEi~~l~~~~~~q~~l-------~~~l~~l~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 178 SMKEG-----K----LNEFREKYRK-KVDILLIDDVQFLIGKTGVQTEL-------FHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_dssp HHHTT-----C----HHHHHHHHTT-TCSEEEEECGGGGSSCHHHHHHH-------HHHHHHHHTTTCEEEEEESSCGGG
T ss_pred HHHcc-----c----HHHHHHHhcC-CCCEEEEeCcccccCChHHHHHH-------HHHHHHHHHCCCeEEEEECCCHHH
Confidence 43221 1 1223344442 467999999976532 1 111 11111113456788888886321
Q ss_pred -------hhhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 308 -------LCIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 308 -------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
....+.....+.+.+++.++..+++.+.+.
T Consensus 241 l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 241 LSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp CSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 011123345789999999999999988875
No 152
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.22 E-value=1.7e-05 Score=83.94 Aligned_cols=185 Identities=14% Similarity=0.038 Sum_probs=101.4
Q ss_pred CCCccccchHHHHHHHHHHHhc------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 155 KDNEAFDSRMKVFQDVMEALKD------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
.....++|++..++.+.+++.. ...+-+.|+|++|+|||++|+.+++.... ..+.++.+.-..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhc
Confidence 3456789999999999988721 23468899999999999999999887432 234444433221
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccC--CCCCC-cccccc------cccC
Q 036977 223 PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVG--IPSGD-VDEKDR------EDDQ 293 (693)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~--~~~~~-~~~~~~------~~~~ 293 (693)
.. .+ .. ......+........+.+|+||+++....-..-. ..... ...++. ....
T Consensus 187 ~~---------~g------~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 KY---------VG------EG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp --------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc---------cc------hH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 00 11 1222333333333366899999997551100000 00000 000000 0012
Q ss_pred CCeEEEEecCChhhhh-hhc-CCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhc
Q 036977 294 RRCTIILTSRSRDLLC-IDM-NSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKL 371 (693)
Q Consensus 294 ~~~~IivTtR~~~v~~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c 371 (693)
....||.||....... ... .....+.+...+.++..+++...+... ...-.......|++.+
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~----------------~~~l~~~~~~~la~~~ 314 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQ----------------GSPLTQKELAQLARMT 314 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTS----------------CCCSCHHHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhc----------------CCCCCHHHHHHHHHHc
Confidence 3456676776543221 111 223578899999999999998876432 1122234567788888
Q ss_pred CCCcc
Q 036977 372 HSLKL 376 (693)
Q Consensus 372 ~glPL 376 (693)
.|..-
T Consensus 315 ~g~~~ 319 (389)
T 3vfd_A 315 DGYSG 319 (389)
T ss_dssp TTCCH
T ss_pred CCCCH
Confidence 87665
No 153
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.16 E-value=1e-05 Score=83.86 Aligned_cols=176 Identities=13% Similarity=0.123 Sum_probs=100.8
Q ss_pred CCCccccchHHHHHHHHHHHhc-----CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKD-----DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 229 (693)
.....++|++..++.+..++.. .....+.|+|++|+|||++|+.+++..... .+.++.+.......+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~~--- 97 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGDL--- 97 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHHH---
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhHH---
Confidence 4567799999999999988853 345678999999999999999998875422 233333322211111
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCccC--ccccCCCCCCc-ccc---------cccccCCCe
Q 036977 230 LASDLGMKFDLNDSIHHRASRLRERLK-QEKRVLIILDNIWTKLE--LDAVGIPSGDV-DEK---------DREDDQRRC 296 (693)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~-~~k~~LlVlDdv~~~~~--~~~l~~~~~~~-~~~---------~~~~~~~~~ 296 (693)
...+. ..+..+|++|+++.... ...+...+... ... ......++.
T Consensus 98 ----------------------~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 98 ----------------------AAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp ----------------------HHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred ----------------------HHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 11111 12567888999876521 11110000000 000 000011235
Q ss_pred EEEEecCChhhhh-hhc-CCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCC
Q 036977 297 TIILTSRSRDLLC-IDM-NSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSL 374 (693)
Q Consensus 297 ~IivTtR~~~v~~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl 374 (693)
.+|.+|....... ... .....+.+.+++.++...++...+... ...-..+....|++.+.|.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~----------------~~~~~~~~~~~l~~~~~G~ 219 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKL----------------NKTCEEKAALEIAKRSRST 219 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT----------------TCEECHHHHHHHHHTTTTC
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhc----------------CCCCCHHHHHHHHHHHCcC
Confidence 6666666543221 111 223689999999999999998876532 1112245667777888887
Q ss_pred cc
Q 036977 375 KL 376 (693)
Q Consensus 375 PL 376 (693)
|-
T Consensus 220 ~r 221 (338)
T 3pfi_A 220 PR 221 (338)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 154
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.16 E-value=3.5e-06 Score=87.86 Aligned_cols=161 Identities=17% Similarity=0.245 Sum_probs=111.0
Q ss_pred hcccccccccccCcccccccc---CCCccccc--C---CCCCCccccc---CcceeeecCCCCCCcCCCchhhcCCCCCC
Q 036977 512 IQKCYEEMIGFRDIKDLQLSH---FPRLQEIW--H---GQALPVSFFN---NLRELVVDDCTNMSSAIPANLLRCLNNLR 580 (693)
Q Consensus 512 ~~~l~~l~~~~~~l~~l~~~~---~~~L~~~~--~---~~~~~~~~~~---~L~~L~i~~c~~~~~~~~~~~l~~L~~L~ 580 (693)
+.+++.|.+.++.++.++... +++|+.+. . ...+|...|. ++..+.+.++.++.. .++..+..+++|+
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNLQ 107 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCTTCC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhccccc
Confidence 346788999999999888655 45555221 1 1235555554 445555666666654 3567788999999
Q ss_pred EEEecCCCCCc-------cccccceeccCC-CCcccc----cCCC-CCcCEeecCCCcCcccccccccCCCCcCEEeccc
Q 036977 581 YLEVRNCDSLE-------EVLHLEELNAKE-EHIGPL----FPRL-SWLRLIDLPKLKRFYNFTGNIIELPELRYLTIEN 647 (693)
Q Consensus 581 ~L~l~~c~~l~-------~l~~L~~L~l~~-~~l~~~----~~~L-~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~ 647 (693)
+|+++++.--. ...++.+|++.+ +.+..+ +..+ ..|+.|++++ +.++.+|.+....++|++|++.+
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTT
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhhcc
Confidence 99998874211 233456677655 455444 4444 4688999998 77999999998999999999999
Q ss_pred cccccccccc----ccccceeeccccccccc
Q 036977 648 CPDMETFISN----STSVLHMTADNKEAQKL 674 (693)
Q Consensus 648 C~~L~~lp~~----~~~l~~l~~~~~~~~~~ 674 (693)
+..++.+|.. ..+|+.|.++++.-...
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred CCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 9999999863 35677777776644333
No 155
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.15 E-value=2.9e-06 Score=79.38 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=43.9
Q ss_pred CCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 156 DNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
....++||+.+++.+.+.+.....+.+.|+|++|+|||++|+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999998776778899999999999999999988644
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.15 E-value=5.2e-06 Score=77.03 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=63.8
Q ss_pred CCCcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCccccccceeccCCCCcccccCCCCCcCEeecCC
Q 036977 544 ALPVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLEEVLHLEELNAKEEHIGPLFPRLSWLRLIDLPK 623 (693)
Q Consensus 544 ~~~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~~l~~L~~L~l~~~~l~~~~~~L~~L~~L~L~~ 623 (693)
.+|...+++|+.|.+.++.-.. .+|..+..+++|++|+++++ .+..++ +..+.++++|++|+|++
T Consensus 26 ~iP~~~~~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N-~l~~i~------------~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 26 SVPAGIPTDKQRLWLNNNQITK--LEPGVFDHLVNLQQLYFNSN-KLTAIP------------TGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SCCSCCCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCCCC------------TTTTTTCTTCCEEECCS
T ss_pred ccCCCcCCCCcEEEeCCCCccc--cCHHHhcCCcCCCEEECCCC-CCCccC------------hhHhCCcchhhEEECCC
Confidence 4555555667777776654222 23455666666666666655 233222 12367899999999998
Q ss_pred CcCccccccc-ccCCCCcCEEecccccccccccc
Q 036977 624 LKRFYNFTGN-IIELPELRYLTIENCPDMETFIS 656 (693)
Q Consensus 624 c~~l~~LP~~-i~~L~~L~~L~i~~C~~L~~lp~ 656 (693)
+.+..+|.. +..+++|++|++++++ +...|.
T Consensus 91 -N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 91 -NHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp -SCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred -CccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 779999886 7789999999999875 444443
No 157
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.14 E-value=3.9e-06 Score=93.21 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=70.4
Q ss_pred CcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC------CCccccccceeccCCCCcccc--cCCCCCcCEeecCC
Q 036977 552 NLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD------SLEEVLHLEELNAKEEHIGPL--FPRLSWLRLIDLPK 623 (693)
Q Consensus 552 ~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~------~l~~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L~~ 623 (693)
.|+.|.+.++. +. .+|. +..|++|++|+++++. .+..+++|++|++++|.+..+ ++.|++|++|+|++
T Consensus 442 ~L~~L~Ls~n~-l~--~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKD-LT--VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSC-CS--SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred CceEEEecCCC-CC--CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCC
Confidence 46666666653 22 2233 6677777777776663 122455667777766655444 78889999999998
Q ss_pred CcCcccc--cccccCCCCcCEEecccccccccccccc
Q 036977 624 LKRFYNF--TGNIIELPELRYLTIENCPDMETFISNS 658 (693)
Q Consensus 624 c~~l~~L--P~~i~~L~~L~~L~i~~C~~L~~lp~~~ 658 (693)
+.+..+ |..++.|++|++|++++++ +..+|+..
T Consensus 518 -N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~ 552 (567)
T 1dce_A 518 -NRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQ 552 (567)
T ss_dssp -SCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCT
T ss_pred -CCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHH
Confidence 568888 8888999999999999884 77777643
No 158
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.12 E-value=1.3e-05 Score=82.49 Aligned_cols=150 Identities=13% Similarity=0.086 Sum_probs=88.9
Q ss_pred CCCCccccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHH
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLAS 232 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 232 (693)
|.....++|++..++.+..++..+.. .++.+.|++|+|||++|+.+++.... .++.++.+.. .... .+..+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~~~-i~~~~~ 94 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KIDF-VRGPLT 94 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CHHH-HHTHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc-CHHH-HHHHHH
Confidence 34567889999999999999986554 67777888999999999999988632 3455554432 2222 222211
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc---CccccCCCCCCcccccccccCCCeEEEEecCChhhh-
Q 036977 233 DLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL---ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL- 308 (693)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~- 308 (693)
....... ..+++.++++||++... ..+.+...+.. ...++++|+||....-.
T Consensus 95 ~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~--------~~~~~~iI~~~n~~~~l~ 150 (324)
T 3u61_B 95 NFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEA--------YSSNCSIIITANNIDGII 150 (324)
T ss_dssp HHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHH--------HGGGCEEEEEESSGGGSC
T ss_pred HHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHh--------CCCCcEEEEEeCCccccC
Confidence 1100000 01257899999998654 12222111100 22456788888765421
Q ss_pred hhhcCCCcEEEcCCCCHHHHHHHHHH
Q 036977 309 CIDMNSQKIFWIDALSKEEALHLAKL 334 (693)
Q Consensus 309 ~~~~~~~~~~~l~~L~~~ea~~Lf~~ 334 (693)
.........+.+.+++.++..+++..
T Consensus 151 ~~l~sR~~~i~~~~~~~~e~~~il~~ 176 (324)
T 3u61_B 151 KPLQSRCRVITFGQPTDEDKIEMMKQ 176 (324)
T ss_dssp TTHHHHSEEEECCCCCHHHHHHHHHH
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHH
Confidence 11111234899999998886555443
No 159
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.11 E-value=1.2e-05 Score=74.69 Aligned_cols=96 Identities=16% Similarity=0.278 Sum_probs=77.6
Q ss_pred CCCCCEEEecCCCC-------CccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCccccccc-ccCCCCcCEE
Q 036977 576 LNNLRYLEVRNCDS-------LEEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGN-IIELPELRYL 643 (693)
Q Consensus 576 L~~L~~L~l~~c~~-------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~-i~~L~~L~~L 643 (693)
.++|++|+++++.- +..+++|++|++++|.+..+ +..+++|++|++++ +.+..+|.. +..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-CCccccCHHHhhCCcccCEE
Confidence 47899999988741 34678999999999887666 67899999999999 678888876 4799999999
Q ss_pred ecccccccccccccc----cccceeecccccccc
Q 036977 644 TIENCPDMETFISNS----TSVLHMTADNKEAQK 673 (693)
Q Consensus 644 ~i~~C~~L~~lp~~~----~~l~~l~~~~~~~~~ 673 (693)
+++++ ++..+|... .+|+.|.+.+++-..
T Consensus 106 ~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 106 ALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99998 688888742 567788887765433
No 160
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.09 E-value=1.2e-05 Score=75.93 Aligned_cols=111 Identities=11% Similarity=0.158 Sum_probs=81.6
Q ss_pred cceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC--------CccccccceeccCCCCcccc----cCCCCCcCEee
Q 036977 553 LRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS--------LEEVLHLEELNAKEEHIGPL----FPRLSWLRLID 620 (693)
Q Consensus 553 L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~--------l~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~ 620 (693)
-+.+.+.+.. +. .+|..+. .+|++|+++++.. +..+++|++|++++|.+..+ +..+++|++|+
T Consensus 10 ~~~l~~s~~~-l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 10 GTTVDCTGRG-LK--EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSC-CS--SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCCC-cC--cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 3555555432 22 3455443 3899999988741 44678999999999887665 78899999999
Q ss_pred cCCCcCccccccc-ccCCCCcCEEecccccccccc-cccc---cccceeeccccc
Q 036977 621 LPKLKRFYNFTGN-IIELPELRYLTIENCPDMETF-ISNS---TSVLHMTADNKE 670 (693)
Q Consensus 621 L~~c~~l~~LP~~-i~~L~~L~~L~i~~C~~L~~l-p~~~---~~l~~l~~~~~~ 670 (693)
|++ +.+..+|.. +..+++|++|+++++ ++..+ |..+ .+|+.|.+.+.+
T Consensus 85 Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 85 LGE-NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCS-CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCC-CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 999 678888765 679999999999998 57776 4433 457777776643
No 161
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.07 E-value=5.2e-05 Score=81.39 Aligned_cols=181 Identities=14% Similarity=0.028 Sum_probs=101.1
Q ss_pred CCccccchHHHHHHHHHHHh------------cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 156 DNEAFDSRMKVFQDVMEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
....++|.+..++.+.+.+. ....+-+.|+|++|+|||+||+.+++.... ...+.++.+.-.
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~v~~~~l~-- 205 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLV-- 205 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEEECCC-----
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEEEeHHHHH--
Confidence 45678899999998888762 123478899999999999999999998621 122333332211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCc-------------cccCCCCCCccccccc
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLEL-------------DAVGIPSGDVDEKDRE 290 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~-------------~~l~~~~~~~~~~~~~ 290 (693)
.. ..+... . ....+........+.+|++|+++....- ..+...+.. . .
T Consensus 206 ----~~---~~g~~~---~----~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~---~-~- 266 (444)
T 2zan_A 206 ----SK---WLGESE---K----LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG---V-G- 266 (444)
T ss_dssp -------------CC---C----THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC---S-S-
T ss_pred ----hh---hcchHH---H----HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC---c-c-
Confidence 11 011110 1 1222233333336799999999865210 011111100 0 0
Q ss_pred ccCCCeEEEEecCChhhhhh-hc-CCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHh
Q 036977 291 DDQRRCTIILTSRSRDLLCI-DM-NSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVF 368 (693)
Q Consensus 291 ~~~~~~~IivTtR~~~v~~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 368 (693)
....+..||.||........ .. .....+.+...+.++...+|...+... ...........|+
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~----------------~~~l~~~~l~~la 330 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGST----------------QNSLTEADFQELG 330 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTS----------------CEECCHHHHHHHH
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcC----------------CCCCCHHHHHHHH
Confidence 02345667777766543211 11 233578888899999999998876432 1111134566788
Q ss_pred hhcCCCccc
Q 036977 369 PKLHSLKLE 377 (693)
Q Consensus 369 ~~c~glPLa 377 (693)
+.+.|..-+
T Consensus 331 ~~t~G~sga 339 (444)
T 2zan_A 331 RKTDGYSGA 339 (444)
T ss_dssp HHTTTCCHH
T ss_pred HHcCCCCHH
Confidence 888886653
No 162
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.05 E-value=2.9e-05 Score=77.71 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=34.6
Q ss_pred ccccchHHHHHHHHH-------HHh---cCCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 158 EAFDSRMKVFQDVME-------ALK---DDKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..++|+...++.++. .+. ......+.|+|++|+|||++|+.+++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 346677666665555 232 34567899999999999999999999843
No 163
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.04 E-value=9.5e-05 Score=75.07 Aligned_cols=161 Identities=14% Similarity=0.190 Sum_probs=90.5
Q ss_pred CCccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 156 DNEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
....++|.+..++.+.+++.. ...+.+.|+|++|+|||+||+.+++.... ..+.++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~------ 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIK------ 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEEC------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEE------
Confidence 345688988888888777642 34567999999999999999999987642 223332
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcc-----ccCCCCCC-ccccccc----cc
Q 036977 223 PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELD-----AVGIPSGD-VDEKDRE----DD 292 (693)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~-----~l~~~~~~-~~~~~~~----~~ 292 (693)
..++.... .+... . ....+........+.++++|+++....-. .-...... ..+++.. ..
T Consensus 82 ~~~l~~~~---~g~~~------~-~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 GPELLTMW---FGESE------A-NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHHH---HTTCT------T-HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred hHHHHhhh---cCchH------H-HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 22222222 22111 1 12222222223367999999998531100 00000000 0000100 02
Q ss_pred CCCeEEEEecCChhhhhhh-c---CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 293 QRRCTIILTSRSRDLLCID-M---NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
..+..||.||......... . .....+.+...+.++..+++.....
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc
Confidence 3456788888766432211 1 1235889999999999999877764
No 164
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.03 E-value=5.1e-06 Score=84.95 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=86.8
Q ss_pred cccchHHHHHHHHHHHh---------------cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCC--EEEEEEecCCC
Q 036977 159 AFDSRMKVFQDVMEALK---------------DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLID--KVVMAEVTQNP 221 (693)
Q Consensus 159 ~~~gR~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~ 221 (693)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++......... ..+.++.+.-
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l- 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL- 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh-
Confidence 46788888888776653 23445789999999999999999998876543222 2333332211
Q ss_pred ChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc-----------CccccCCCCCCccccccc
Q 036977 222 DPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL-----------ELDAVGIPSGDVDEKDRE 290 (693)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~~~~~ 290 (693)
..... ..... .+...+...+..+|++|+++... ....+... +.
T Consensus 111 -------------~~~~~--g~~~~---~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~-------l~- 164 (309)
T 3syl_A 111 -------------VGQYI--GHTAP---KTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQV-------ME- 164 (309)
T ss_dssp -------------CCSST--TCHHH---HHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHH-------HH-
T ss_pred -------------hhhcc--cccHH---HHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHH-------Hh-
Confidence 00000 11111 12222222134699999998541 01111111 11
Q ss_pred ccCCCeEEEEecCChhhhh------hhc-CCCcEEEcCCCCHHHHHHHHHHhhhh
Q 036977 291 DDQRRCTIILTSRSRDLLC------IDM-NSQKIFWIDALSKEEALHLAKLQHLE 338 (693)
Q Consensus 291 ~~~~~~~IivTtR~~~v~~------~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 338 (693)
....+..||.||....... ... .....+.+.+++.++..+++...+..
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 165 NNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp HCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 1334567888876432210 000 12268999999999999999888753
No 165
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.02 E-value=2.8e-05 Score=84.15 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=85.1
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCC----C-EEEEEEecCCCChHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLI----D-KVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~-~~~wv~vs~~~~~~~~~~~ 229 (693)
.....++||+.++..++..+......-+.|+|++|+|||++|+.+++........ + .++.++++.
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~---------- 246 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT---------- 246 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc----------
Confidence 3456799999999999999976666677899999999999999999986432111 1 122333320
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhh--
Q 036977 230 LASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL-- 307 (693)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v-- 307 (693)
...| ..+.....+...+...++.++++| -..+..+.+...+. ....++|.+|.....
T Consensus 247 --~~~g-------~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~----------~g~v~vI~at~~~e~~~ 305 (468)
T 3pxg_A 247 --KYRG-------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA----------RGELQCIGATTLDEYRK 305 (468)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT----------SSSCEEEEECCTTTTHH
T ss_pred --cccc-------hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc----------CCCEEEEecCCHHHHHH
Confidence 0000 000112222333333367899999 12222222322221 123456655554431
Q ss_pred ----hhhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 308 ----LCIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 308 ----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
..........+.+.+.+.++..+++.....
T Consensus 306 ~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 306 YIEKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 011111234799999999999999987764
No 166
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.01 E-value=2.2e-05 Score=72.47 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=61.9
Q ss_pred CcccccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCccccccceeccCCCCcccccCCCCCcCEeecCCCc
Q 036977 546 PVSFFNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLEEVLHLEELNAKEEHIGPLFPRLSWLRLIDLPKLK 625 (693)
Q Consensus 546 ~~~~~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~~l~~L~~L~l~~~~l~~~~~~L~~L~~L~L~~c~ 625 (693)
|...+++|+.|.+.++.-.. .++..+..+++|++|+++++. +..++ +..+..+++|++|+|++ +
T Consensus 25 p~~~~~~l~~L~L~~N~i~~--~~~~~~~~l~~L~~L~Ls~N~-l~~l~------------~~~f~~l~~L~~L~L~~-N 88 (170)
T 3g39_A 25 PTGIPTTTQVLYLYDNQITK--LEPGVFDRLTQLTRLDLDNNQ-LTVLP------------AGVFDKLTQLTQLSLND-N 88 (170)
T ss_dssp CSCCCTTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSC-CCCCC------------TTTTTTCTTCCEEECCS-S
T ss_pred CccCCCCCcEEEcCCCcCCc--cChhhhcCcccCCEEECCCCC-cCccC------------hhhccCCCCCCEEECCC-C
Confidence 33334678888887754322 345667778888888887663 33332 22367889999999998 6
Q ss_pred Cccccccc-ccCCCCcCEEeccccc
Q 036977 626 RFYNFTGN-IIELPELRYLTIENCP 649 (693)
Q Consensus 626 ~l~~LP~~-i~~L~~L~~L~i~~C~ 649 (693)
.+..+|.. +..+++|++|++++.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 78888875 6789999999998754
No 167
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.01 E-value=2.7e-05 Score=81.71 Aligned_cols=49 Identities=18% Similarity=0.366 Sum_probs=38.8
Q ss_pred CccccchHHHHHH---HHHHHhcCCc--eEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 157 NEAFDSRMKVFQD---VMEALKDDKL--NIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 157 ~~~~~gR~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
...|+|++..++. +.+.+..... +.+.|+|++|+|||++|+.+++....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4578999988766 4555544433 58999999999999999999998764
No 168
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.00 E-value=4.1e-06 Score=88.62 Aligned_cols=122 Identities=11% Similarity=0.113 Sum_probs=82.5
Q ss_pred cCcceeeecCCCCCCcCCCc---hhhcCCCCCCEEEecCCC------------CCccccccceeccCCCCcc--------
Q 036977 551 NNLRELVVDDCTNMSSAIPA---NLLRCLNNLRYLEVRNCD------------SLEEVLHLEELNAKEEHIG-------- 607 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~---~~l~~L~~L~~L~l~~c~------------~l~~l~~L~~L~l~~~~l~-------- 607 (693)
++|++|.+.+|.-.. ...+ ..+..+++|++|++++|. .+..+++|++|++++|.+.
T Consensus 159 ~~L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLEN-GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTG-GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred CCCcEEECCCCCCCc-HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 678888888765321 1122 356678888888888874 2235678888888888773
Q ss_pred cccCCCCCcCEeecCCCcCccc-----ccccc--cCCCCcCEEeccccccccc-----ccccc----cccceeecccccc
Q 036977 608 PLFPRLSWLRLIDLPKLKRFYN-----FTGNI--IELPELRYLTIENCPDMET-----FISNS----TSVLHMTADNKEA 671 (693)
Q Consensus 608 ~~~~~L~~L~~L~L~~c~~l~~-----LP~~i--~~L~~L~~L~i~~C~~L~~-----lp~~~----~~l~~l~~~~~~~ 671 (693)
..+..+++|++|+|++|. +.. +|..+ +.+++|++|++++|. +.. +|... .+|+.|.+.+|+-
T Consensus 238 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 226778888888888854 543 46665 348888888888884 555 66543 6677788777765
Q ss_pred cccc
Q 036977 672 QKLK 675 (693)
Q Consensus 672 ~~~~ 675 (693)
....
T Consensus 316 ~~~~ 319 (386)
T 2ca6_A 316 SEED 319 (386)
T ss_dssp CTTS
T ss_pred Ccch
Confidence 4433
No 169
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.00 E-value=7e-05 Score=76.99 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhcC--CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCC
Q 036977 164 MKVFQDVMEALKDD--KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLN 241 (693)
Q Consensus 164 ~~~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 241 (693)
......+...+... ....+.|+|++|+||||||+.+++..... -..+++++.. ++...+...+...
T Consensus 20 ~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~~~~~~~---- 87 (324)
T 1l8q_A 20 RLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMVEHLKKG---- 87 (324)
T ss_dssp HHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHHHHHHcC----
Confidence 33444455555443 34678999999999999999999987543 1234555543 2333333333110
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC---c-cccCCCCCCcccccccccCCCeEEEEecCChhh--------hh
Q 036977 242 DSIHHRASRLRERLKQEKRVLIILDNIWTKLE---L-DAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL--------LC 309 (693)
Q Consensus 242 ~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v--------~~ 309 (693)
....+.+.+. +..+|++||++.... + +.+. ..+......+..||+||....- ..
T Consensus 88 -----~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~-------~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~ 153 (324)
T 1l8q_A 88 -----TINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFF-------HIFNTLYLLEKQIILASDRHPQKLDGVSDRLV 153 (324)
T ss_dssp -----CHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHH-------HHHHHHHHTTCEEEEEESSCGGGCTTSCHHHH
T ss_pred -----cHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHH-------HHHHHHHHCCCeEEEEecCChHHHHHhhhHhh
Confidence 1112233333 357999999976532 1 1111 1111112345678888764321 01
Q ss_pred hhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 310 IDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 310 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
..+.....+.+.+ +.++..+++...+.
T Consensus 154 sR~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 154 SRFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp HHHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred hcccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 1123336799999 99999999988875
No 170
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.98 E-value=2.8e-05 Score=80.98 Aligned_cols=181 Identities=13% Similarity=0.022 Sum_probs=100.3
Q ss_pred CCccccchHHHHHHHHHHHhc------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 156 DNEAFDSRMKVFQDVMEALKD------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
....++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+.+++..... .+.++.+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH-----
Confidence 345688999888888877621 123468899999999999999999987422 2333322
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcc---------ccCCCCCCcccccccc--c
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELD---------AVGIPSGDVDEKDRED--D 292 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~---------~l~~~~~~~~~~~~~~--~ 292 (693)
++ ... ... .. +.....+.......++.+|+||+++....-. .+...+ ...+... .
T Consensus 119 -~l----~~~----~~g-~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l---l~~l~~~~~~ 184 (355)
T 2qp9_X 119 -DL----VSK----WMG-ES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTEL---LVQMNGVGND 184 (355)
T ss_dssp -HH----HSC----C----C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHH---HHHHHHCC--
T ss_pred -HH----hhh----hcc-hH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHH---HHHhhccccc
Confidence 11 110 000 11 2223333333333367999999998652100 000000 0000000 2
Q ss_pred CCCeEEEEecCChhhhhh--hcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhh
Q 036977 293 QRRCTIILTSRSRDLLCI--DMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPK 370 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 370 (693)
..+..||.||........ .-.....+.+...+.++..+++...+... ...........|++.
T Consensus 185 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~----------------~~~~~~~~l~~la~~ 248 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDT----------------PSVLTKEDYRTLGAM 248 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTS----------------CBCCCHHHHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhC----------------CCCCCHHHHHHHHHH
Confidence 345667767765532210 11234678899999999999998876432 111113456678888
Q ss_pred cCCCcc
Q 036977 371 LHSLKL 376 (693)
Q Consensus 371 c~glPL 376 (693)
+.|..-
T Consensus 249 t~G~sg 254 (355)
T 2qp9_X 249 TEGYSG 254 (355)
T ss_dssp TTTCCH
T ss_pred cCCCCH
Confidence 887654
No 171
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.96 E-value=7.6e-05 Score=76.99 Aligned_cols=167 Identities=8% Similarity=0.069 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHhcCC-ceEEEEEecCCCcHHHHHHHHHHHhhccC--------------------CCCEEEEEEec---
Q 036977 163 RMKVFQDVMEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKKVMEDK--------------------LIDKVVMAEVT--- 218 (693)
Q Consensus 163 R~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs--- 218 (693)
.++..+.+...+..++ ...+.++|+.|+|||++|+.+++...... |++ ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 4666777888777665 45799999999999999999998864321 123 2333322
Q ss_pred CCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCe
Q 036977 219 QNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRC 296 (693)
Q Consensus 219 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~ 296 (693)
......+ .+++.+.+..... .+++-++|+|+++... ..+.+...+.. ...++
T Consensus 86 ~~~~i~~-ir~l~~~~~~~~~-----------------~~~~kvviIdead~l~~~a~naLLk~lEe--------p~~~~ 139 (334)
T 1a5t_A 86 NTLGVDA-VREVTEKLNEHAR-----------------LGGAKVVWVTDAALLTDAAANALLKTLEE--------PPAET 139 (334)
T ss_dssp SSBCHHH-HHHHHHHTTSCCT-----------------TSSCEEEEESCGGGBCHHHHHHHHHHHTS--------CCTTE
T ss_pred CCCCHHH-HHHHHHHHhhccc-----------------cCCcEEEEECchhhcCHHHHHHHHHHhcC--------CCCCe
Confidence 1122222 2334443332211 1257899999998653 22222111111 23456
Q ss_pred EEEEecCChh-hhhhhcCCCcEEEcCCCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCc
Q 036977 297 TIILTSRSRD-LLCIDMNSQKIFWIDALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLK 375 (693)
Q Consensus 297 ~IivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 375 (693)
.+|++|.+.. +..........+.+.+++.++..+.+.+... . ..+....+++.++|-|
T Consensus 140 ~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-~--------------------~~~~~~~l~~~s~G~~ 198 (334)
T 1a5t_A 140 WFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-M--------------------SQDALLAALRLSAGSP 198 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-C--------------------CHHHHHHHHHHTTTCH
T ss_pred EEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-C--------------------CHHHHHHHHHHcCCCH
Confidence 7777766653 3332233446899999999999988877641 0 1245567888889988
Q ss_pred cc
Q 036977 376 LE 377 (693)
Q Consensus 376 La 377 (693)
..
T Consensus 199 r~ 200 (334)
T 1a5t_A 199 GA 200 (334)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 172
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.96 E-value=5.5e-05 Score=88.30 Aligned_cols=167 Identities=15% Similarity=0.191 Sum_probs=88.5
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCC-----CCEEEEEEecCCCChHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKL-----IDKVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~ 229 (693)
.....++||++++..+++.+......-+.++|.+|+||||+|+.+++....... -..+++++++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 456678999999999999997766667889999999999999999998743211 12344554432110
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCccCccccCCCCCCcccccccc-cCCCeEEEEecCChhh
Q 036977 230 LASDLGMKFDLNDSIHHRASRLRERLKQ-EKRVLIILDNIWTKLELDAVGIPSGDVDEKDRED-DQRRCTIILTSRSRDL 307 (693)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~IivTtR~~~v 307 (693)
+... ....+.....+...+.. .++.+|++|+++....-..-... .+....+... ...+..+|.+|.....
T Consensus 240 -----g~~~--~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~-~~~~~~L~~~l~~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 -----GAKY--RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA-VDAGNMLKPALARGELRLIGATTLDEY 311 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHHHTTCCCEEEEECHHHH
T ss_pred -----cCcc--chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch-HHHHHHHHHHHhCCCeEEEEecCchHH
Confidence 0000 01223333334444432 25789999999865310000000 0000000000 1223345555543321
Q ss_pred -----hhhhcCCCcEEEcCCCCHHHHHHHHHHhh
Q 036977 308 -----LCIDMNSQKIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 308 -----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
..........+.+.+++.++..+++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 11111223468999999999999997654
No 173
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00011 Score=76.25 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=93.1
Q ss_pred CccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 157 NEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
..++.|-++.+++|.+.+.- ..++-|.++|++|.|||.||+++++..... .+.++.++-.+.
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~sk 221 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELVQK 221 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSCS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhcc
Confidence 45567888777777665521 245678899999999999999999987643 344444432210
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCC------ccccccc----ccC
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGD------VDEKDRE----DDQ 293 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~------~~~~~~~----~~~ 293 (693)
.- ...+.....+...-+...+++|++|+++....-..-...-.+ +.+++.. ...
T Consensus 222 --------------~v--Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 222 --------------YI--GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp --------------ST--THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred --------------cc--chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 00 112223333444444447899999999865210000000000 0011110 133
Q ss_pred CCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 294 RRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 294 ~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.+..||.||.........+ ..+..+.+..-+.++..++|..+..
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 333 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSR 333 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhc
Confidence 4556778887766542222 2456899999999999999987764
No 174
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.93 E-value=1.5e-05 Score=74.34 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=67.5
Q ss_pred chHHHHHHHHHHHhc---CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCC
Q 036977 162 SRMKVFQDVMEALKD---DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKF 238 (693)
Q Consensus 162 gR~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 238 (693)
++.+.++.+.+++.+ .....+.|+|++|+|||||++.+++.......+ .+++++ ..++...+........
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCch
Confidence 355566666665543 235789999999999999999999987633222 233333 3444444443332111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cCccccCCCCCCcccccccccCCCeEEEEecCCh
Q 036977 239 DLNDSIHHRASRLRERLKQEKRVLIILDNIWTK--LELDAVGIPSGDVDEKDREDDQRRCTIILTSRSR 305 (693)
Q Consensus 239 ~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~ 305 (693)
.. .+.+.+. +.-+|||||++.. +.|..- .+.+.+......|..+|+||...
T Consensus 91 ~~---------~~~~~~~--~~~llilDE~~~~~~~~~~~~-----~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 DT---------KFLKTVL--NSPVLVLDDLGSERLSDWQRE-----LISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CS---------HHHHHHH--TCSEEEEETCSSSCCCHHHHH-----HHHHHHHHHHHTTCEEEEECCCC
T ss_pred HH---------HHHHHhc--CCCEEEEeCCCCCcCCHHHHH-----HHHHHHHHHHHcCCCEEEEcCCC
Confidence 10 2233333 3579999999742 333211 01111222233567788888765
No 175
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.92 E-value=3.6e-05 Score=73.14 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHhcC----CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCC
Q 036977 163 RMKVFQDVMEALKDD----KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKF 238 (693)
Q Consensus 163 R~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 238 (693)
+...++.+..++... ....+.|+|++|+|||+||+.+++..... ...++|++++ .+...+.......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~- 104 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQDQ- 104 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC---C-
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhccc-
Confidence 444556666666543 12788999999999999999999987654 3446666553 3444443332111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cCccccCCCCCCcccccccccCCCeEEEEecCCh
Q 036977 239 DLNDSIHHRASRLRERLKQEKRVLIILDNIWTK--LELDAVGIPSGDVDEKDREDDQRRCTIILTSRSR 305 (693)
Q Consensus 239 ~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~ 305 (693)
.. ..+...+.. .-+|||||++.. ..|..-.. +...+......+.++|+||...
T Consensus 105 ----~~----~~~~~~~~~--~~~lilDei~~~~~~~~~~~~l----l~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 105 ----TM----NEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDV----FGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ----CC----HHHHHHHHH--SSEEEEEEECCC---CCGGGTT----HHHHHHHHHHTTCCEEEEESSC
T ss_pred ----hH----HHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHH----HHHHHHHHHhCCCCEEEEcCCC
Confidence 11 122333443 249999999653 33332111 0011111123455688888754
No 176
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.90 E-value=7.7e-06 Score=90.83 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=73.0
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC-----CCccccccceeccCCCCccc-----ccCCCCCcCEe
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD-----SLEEVLHLEELNAKEEHIGP-----LFPRLSWLRLI 619 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~-----~l~~l~~L~~L~l~~~~l~~-----~~~~L~~L~~L 619 (693)
+++|+.|.+.++. +. .+|..++.|++|++|+++++. .+..+++|++|++++|.+.. .++.|++|+.|
T Consensus 462 l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNR-LR--ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccc-cc--ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 5688999998864 33 457899999999999998874 33467899999999977644 47889999999
Q ss_pred ecCCCcCccccccccc----CCCCcCEEec
Q 036977 620 DLPKLKRFYNFTGNII----ELPELRYLTI 645 (693)
Q Consensus 620 ~L~~c~~l~~LP~~i~----~L~~L~~L~i 645 (693)
+|++ +.+..+|..+. .+|+|+.|++
T Consensus 539 ~L~~-N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQG-NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTT-SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecC-CcCCCCccHHHHHHHHCcccCccCC
Confidence 9999 66888887654 3788888853
No 177
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00021 Score=75.42 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=93.2
Q ss_pred CccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 157 NEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
..++.|-++.++.|.+.+.- ..++-|.++|++|.|||+||+++++..... .+.++.+.-.+.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~sk 254 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVDK 254 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCCS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhccc
Confidence 45667888887777766531 245789999999999999999999987643 344444432210
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCC------ccccccc----ccC
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGD------VDEKDRE----DDQ 293 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~------~~~~~~~----~~~ 293 (693)
.. ...+.....+...-+...+++|++|+++....-..-.....+ +.+++.. ...
T Consensus 255 --------------~~--Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 255 --------------YI--GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp --------------SS--SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred --------------cc--hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 00 112223333444444447899999999865211000000000 0011111 123
Q ss_pred CCeEEEEecCChhhhhhhc-C---CCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 294 RRCTIILTSRSRDLLCIDM-N---SQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 294 ~~~~IivTtR~~~v~~~~~-~---~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.+..||.||.........+ . .+..+.+...+.++..++|..+..
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 366 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTA 366 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhc
Confidence 4557888887766543222 1 235788888899999999987764
No 178
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.86 E-value=4e-06 Score=88.68 Aligned_cols=95 Identities=16% Similarity=0.228 Sum_probs=61.8
Q ss_pred CCCCEEEecCCCCC-----------ccccccceeccCCCCccc---------ccCCCCCcCEeecCCCcCc-----cccc
Q 036977 577 NNLRYLEVRNCDSL-----------EEVLHLEELNAKEEHIGP---------LFPRLSWLRLIDLPKLKRF-----YNFT 631 (693)
Q Consensus 577 ~~L~~L~l~~c~~l-----------~~l~~L~~L~l~~~~l~~---------~~~~L~~L~~L~L~~c~~l-----~~LP 631 (693)
++|++|++++|.-- ..+++|++|++++|.+.. .+..+++|++|+|++|. + ..+|
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHH
Confidence 67777777766421 145677777777766652 35677778888887744 5 5677
Q ss_pred ccccCCCCcCEEeccccccccc-----cccc-----ccccceeecccccccc
Q 036977 632 GNIIELPELRYLTIENCPDMET-----FISN-----STSVLHMTADNKEAQK 673 (693)
Q Consensus 632 ~~i~~L~~L~~L~i~~C~~L~~-----lp~~-----~~~l~~l~~~~~~~~~ 673 (693)
..+..+++|++|++++|. +.. +|.. ..+|+.|.+.+|.-..
T Consensus 238 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 777777888888888774 443 2332 4557777777765443
No 179
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.83 E-value=3.3e-05 Score=80.25 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=46.6
Q ss_pred hcCCCCCCEEEecCCCCC--------ccccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccccCCCCc
Q 036977 573 LRCLNNLRYLEVRNCDSL--------EEVLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNIIELPEL 640 (693)
Q Consensus 573 l~~L~~L~~L~l~~c~~l--------~~l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i~~L~~L 640 (693)
+..+++|++|+|+++..+ ..+++|++|++++|.+..+ |.+|++|++|+|++ +.|..+|..+....+|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCCc
Confidence 555555555555542222 2344555555555544333 67788888888887 6788888776544448
Q ss_pred CEEeccccc
Q 036977 641 RYLTIENCP 649 (693)
Q Consensus 641 ~~L~i~~C~ 649 (693)
++|++.+++
T Consensus 106 ~~l~l~~N~ 114 (347)
T 2ifg_A 106 QELVLSGNP 114 (347)
T ss_dssp CEEECCSSC
T ss_pred eEEEeeCCC
Confidence 888887653
No 180
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00023 Score=75.01 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=92.2
Q ss_pred ccccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChH
Q 036977 158 EAFDSRMKVFQDVMEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQ 224 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 224 (693)
..+.|-++.++.|.+.+. -..++-|.++|++|+|||+||++++++.... .+.++.+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc--
Confidence 457788888888776542 1356788999999999999999999987643 33444432211
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCC-C-----Ccccccc----cccCC
Q 036977 225 KIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPS-G-----DVDEKDR----EDDQR 294 (693)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~-~-----~~~~~~~----~~~~~ 294 (693)
..- ...+.....+...-+...+++|++|+++....-..-...- . .+.+++. .....
T Consensus 282 ------------k~v--Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 ------------KYV--GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ------------CSS--SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ------------ccC--CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 000 1122233333333334478999999998552110000000 0 0000010 11234
Q ss_pred CeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 295 RCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 295 ~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
+..||.||.........+ .....+.+...+.++..++|..+..
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~ 394 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSK 394 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHT
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhc
Confidence 556777886665432222 2456889999999999999987764
No 181
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.80 E-value=2.9e-06 Score=95.30 Aligned_cols=14 Identities=7% Similarity=-0.287 Sum_probs=7.3
Q ss_pred hcccccccccccCc
Q 036977 512 IQKCYEEMIGFRDI 525 (693)
Q Consensus 512 ~~~l~~l~~~~~~l 525 (693)
..++++|.+.++.+
T Consensus 104 ~~~L~~L~L~~~~~ 117 (594)
T 2p1m_B 104 YTWLEEIRLKRMVV 117 (594)
T ss_dssp CTTCCEEEEESCBC
T ss_pred CCCCCeEEeeCcEE
Confidence 34555555555544
No 182
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00012 Score=77.30 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=91.5
Q ss_pred CCccccchHHHHHHHHHHHh----c---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 156 DNEAFDSRMKVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
....+.|-++.++.|.+.+. . ..++-|.++|++|.|||.||+++++..... .+.++.+.-.+
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~~ 253 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQLVQ 253 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhhhh
Confidence 35667788888888876642 1 245788999999999999999999987643 33444432211
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccc--cCCCCCC----ccccccc----cc
Q 036977 223 PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDA--VGIPSGD----VDEKDRE----DD 292 (693)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~--l~~~~~~----~~~~~~~----~~ 292 (693)
..- ...+.....+...-+...+++|++|+++....-.. -...... +.+++.. ..
T Consensus 254 --------------~~v--Gese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 254 --------------MYI--GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp --------------SCS--SHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred --------------ccc--chHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 000 11122333333333333689999999874311000 0000000 0000000 02
Q ss_pred CCCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 293 QRRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
..+..||.||.........+ .....+.+...+.++..++|..+..
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 366 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSR 366 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhc
Confidence 34456777887766543222 1235788998999999999987664
No 183
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=1.2e-05 Score=73.71 Aligned_cols=86 Identities=12% Similarity=0.233 Sum_probs=62.3
Q ss_pred CcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCc--cccccceeccCCCCcccccCCC----CCcCEeecCCCc
Q 036977 552 NLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLE--EVLHLEELNAKEEHIGPLFPRL----SWLRLIDLPKLK 625 (693)
Q Consensus 552 ~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~--~l~~L~~L~l~~~~l~~~~~~L----~~L~~L~L~~c~ 625 (693)
+|+.|++.+|. +... -...+..+++|++|++++|..+. .+.+ ++.+ ++|+.|+|++|+
T Consensus 62 ~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--------------L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLER--------------LSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHH--------------HHTCHHHHHHCCEEEEESCT
T ss_pred eEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHH--------------HHhcccccCCCCEEEcCCCC
Confidence 69999999997 4321 12346789999999999998765 1111 3333 369999999999
Q ss_pred Cccccc-ccccCCCCcCEEeccccccccc
Q 036977 626 RFYNFT-GNIIELPELRYLTIENCPDMET 653 (693)
Q Consensus 626 ~l~~LP-~~i~~L~~L~~L~i~~C~~L~~ 653 (693)
+++.-- ..+.++++|++|++++|+++..
T Consensus 126 ~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 126 NVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 877411 1345789999999999998865
No 184
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.78 E-value=3e-06 Score=95.08 Aligned_cols=92 Identities=13% Similarity=0.166 Sum_probs=41.2
Q ss_pred cceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-----------CccccccceeccCCCCccc--------ccCCC
Q 036977 553 LRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-----------LEEVLHLEELNAKEEHIGP--------LFPRL 613 (693)
Q Consensus 553 L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-----------l~~l~~L~~L~l~~~~l~~--------~~~~L 613 (693)
|++|.+.+|.......++.....+++|++|++++|.. ...+++|++|+++++.+.. ++.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6666666555322111122223455666666655531 1134555555555544431 13445
Q ss_pred CCcCEeecCCCcCcccccccccCCCCcCEEec
Q 036977 614 SWLRLIDLPKLKRFYNFTGNIIELPELRYLTI 645 (693)
Q Consensus 614 ~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i 645 (693)
++|+.|++.+|. +..+|..+..+++|++|++
T Consensus 220 ~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 220 RSLVSVKVGDFE-ILELVGFFKAAANLEEFCG 250 (592)
T ss_dssp TTCCEEECSSCB-GGGGHHHHHHCTTCCEEEE
T ss_pred CCCcEEeccCcc-HHHHHHHHhhhhHHHhhcc
Confidence 555555555532 3334433333444444443
No 185
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00031 Score=73.29 Aligned_cols=161 Identities=13% Similarity=0.131 Sum_probs=92.4
Q ss_pred CCccccchHHHHHHHHHHHh----c---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 156 DNEAFDSRMKVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
...++.|-++.++.|.+.+. . ..++-|.++|++|.|||.||++++++.... .+.++.++-.+
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~s 254 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSELIQ 254 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGGCC
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHhhh
Confidence 34556788887777776552 1 235789999999999999999999997643 23344332111
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCC------ccccccc----cc
Q 036977 223 PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGD------VDEKDRE----DD 292 (693)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~------~~~~~~~----~~ 292 (693)
..- ...+.....+...-+...+++|++|+++....-..-...-.. +.+++.. ..
T Consensus 255 --------------k~v--Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 255 --------------KYL--GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp --------------SSS--SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred --------------ccC--chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 000 112233334444444447899999998854211100000000 0011110 12
Q ss_pred CCCeEEEEecCChhhhhhhcC----CCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 293 QRRCTIILTSRSRDLLCIDMN----SQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~~~~~~----~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
..+..||.||.........+- .+..+.+..-+.++..++|..+..
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~ 367 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTS 367 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhc
Confidence 345567888877765433221 234688888899999999987764
No 186
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=7.9e-05 Score=75.50 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhc-c-CCCCEEEEEEecC-CCChHHHHHHHHHHhCCCC
Q 036977 162 SRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVME-D-KLIDKVVMAEVTQ-NPDPQKIQDKLASDLGMKF 238 (693)
Q Consensus 162 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~-~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 238 (693)
|.++.++.+...+..++.+...++|++|+||||+|+.+.+.... . .+.+ ..+++.+. ...+.+ .+++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence 44556777778787666789999999999999999999875321 1 2233 35555443 333333 344555554322
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCChh-hhhhhcCCC
Q 036977 239 DLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD-LLCIDMNSQ 315 (693)
Q Consensus 239 ~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~-v~~~~~~~~ 315 (693)
.. +++-++|+|+++... ..+.+...+.. ..+.+.+|++|.+.. +... ...-
T Consensus 79 ~~-----------------~~~kvviIdead~lt~~a~naLLk~LEe--------p~~~t~fIl~t~~~~kl~~t-I~SR 132 (305)
T 2gno_A 79 EL-----------------YTRKYVIVHDCERMTQQAANAFLKALEE--------PPEYAVIVLNTRRWHYLLPT-IKSR 132 (305)
T ss_dssp SS-----------------SSSEEEEETTGGGBCHHHHHHTHHHHHS--------CCTTEEEEEEESCGGGSCHH-HHTT
T ss_pred cc-----------------CCceEEEeccHHHhCHHHHHHHHHHHhC--------CCCCeEEEEEECChHhChHH-HHce
Confidence 21 256899999998652 23333222111 334667777665543 3222 2233
Q ss_pred cEEEcCCCCHHHHHHHHHHhh
Q 036977 316 KIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 316 ~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
.+++.+++.++..+.+.+..
T Consensus 133 -~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 133 -VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -SEEEECCCCHHHHHHHHHHH
T ss_pred -eEeCCCCCHHHHHHHHHHHh
Confidence 99999999999999887775
No 187
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.74 E-value=0.0001 Score=68.12 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=46.5
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCCccccccceeccCCCCcccccCCCCCcCEeecCCCcCccc
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSLEEVLHLEELNAKEEHIGPLFPRLSWLRLIDLPKLKRFYN 629 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l~~l~~L~~L~l~~~~l~~~~~~L~~L~~L~L~~c~~l~~ 629 (693)
+++|+.|.+.++. +.. .++..+..+++|++|+++++. +..++ +..+..+++|++|+|.+ +.+..
T Consensus 56 l~~L~~L~Ls~N~-l~~-i~~~~~~~l~~L~~L~L~~N~-l~~l~------------~~~~~~l~~L~~L~L~~-N~~~c 119 (174)
T 2r9u_A 56 LVNLQQLYFNSNK-LTA-IPTGVFDKLTQLTQLDLNDNH-LKSIP------------RGAFDNLKSLTHIYLYN-NPWDC 119 (174)
T ss_dssp CTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSC-CCCCC------------TTTTTTCTTCSEEECCS-SCBCT
T ss_pred CcCCCEEECCCCC-CCc-cChhHhCCcchhhEEECCCCc-cceeC------------HHHhccccCCCEEEeCC-CCccc
Confidence 4688888888763 332 344456789999999997763 33332 12377889999999998 55665
Q ss_pred ccccc
Q 036977 630 FTGNI 634 (693)
Q Consensus 630 LP~~i 634 (693)
.|..+
T Consensus 120 ~~~~~ 124 (174)
T 2r9u_A 120 ECRDI 124 (174)
T ss_dssp TBGGG
T ss_pred ccccH
Confidence 55544
No 188
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.73 E-value=7e-07 Score=84.93 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=72.9
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC--Cc----cccccceeccCCCCcccc--cCCCCCcCEeec
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS--LE----EVLHLEELNAKEEHIGPL--FPRLSWLRLIDL 621 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~--l~----~l~~L~~L~l~~~~l~~~--~~~L~~L~~L~L 621 (693)
+++|+.|.+.++. +. ..| .+..+++|++|++++|.- +. .+++|++|++++|.+..+ ++.+++|++|++
T Consensus 47 l~~L~~L~ls~n~-l~--~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 47 LKACKHLALSTNN-IE--KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM 122 (198)
T ss_dssp TTTCSEEECSEEE-ES--CCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred CCCCCEEECCCCC-Cc--ccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence 5688888888764 33 234 778889999999988741 11 346788898888776665 677888999999
Q ss_pred CCCcCcccccc--cccCCCCcCEEecccccccccc
Q 036977 622 PKLKRFYNFTG--NIIELPELRYLTIENCPDMETF 654 (693)
Q Consensus 622 ~~c~~l~~LP~--~i~~L~~L~~L~i~~C~~L~~l 654 (693)
++ +.+..+|. .+..+++|++|++.+|+ +...
T Consensus 123 ~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~ 155 (198)
T 1ds9_A 123 SN-NKITNWGEIDKLAALDKLEDLLLAGNP-LYND 155 (198)
T ss_dssp SE-EECCCHHHHHHHTTTTTCSEEEECSCH-HHHH
T ss_pred CC-CcCCchhHHHHHhcCCCCCEEEecCCc-cccc
Confidence 88 55777664 67788999999999885 4443
No 189
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.0003 Score=74.17 Aligned_cols=161 Identities=16% Similarity=0.108 Sum_probs=88.1
Q ss_pred CCccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 156 DNEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
...++.|-++.++.|.+.+.- ..++-+.++|++|+|||+||+++++..... .+.++.++-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc
Confidence 345677888888887776531 245678999999999999999999987543 34444443221
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCC------cccccc----ccc
Q 036977 223 PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGD------VDEKDR----EDD 292 (693)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~------~~~~~~----~~~ 292 (693)
. .- ...+.....+...-+...++++++|+++....-..-...-.+ +.+++. ...
T Consensus 245 ~--------------~~--Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 K--------------YL--GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp S--------------SC--SHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred c--------------cc--chhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 0 00 112222333333333347899999998743110000000000 001111 113
Q ss_pred CCCeEEEEecCChhhhhhhc-C---CCcEEEcCCC-CHHHHHHHHHHhhh
Q 036977 293 QRRCTIILTSRSRDLLCIDM-N---SQKIFWIDAL-SKEEALHLAKLQHL 337 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~~~~~-~---~~~~~~l~~L-~~~ea~~Lf~~~~~ 337 (693)
..+..||.||.......... . .+..+.+..+ +.++...+|..+..
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~ 358 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS 358 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44567788887665432222 1 2246777555 56666777766654
No 190
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.70 E-value=0.00041 Score=80.04 Aligned_cols=159 Identities=16% Similarity=0.216 Sum_probs=94.9
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccC----CCCEEEE-EEecCCCChHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDK----LIDKVVM-AEVTQNPDPQKIQDK 229 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~w-v~vs~~~~~~~~~~~ 229 (693)
.....++||+.++..+++.+......-+.|+|.+|+|||++|+.+++...... ..+..+| ++++.-..
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~------- 255 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA------- 255 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-------
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc-------
Confidence 34567899999999999999876667788999999999999999998864321 1233322 22221100
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--------C---ccccCCCCCCcccccccccCCCeEE
Q 036977 230 LASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKL--------E---LDAVGIPSGDVDEKDREDDQRRCTI 298 (693)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~--------~---~~~l~~~~~~~~~~~~~~~~~~~~I 298 (693)
+. ......+.....+.+.+...++.+|++||++... . .+.+...+ ...+..+
T Consensus 256 -----~~--~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l----------~~~~~~~ 318 (758)
T 1r6b_X 256 -----GT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL----------SSGKIRV 318 (758)
T ss_dssp -----CC--CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS----------SSCCCEE
T ss_pred -----cc--cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH----------hCCCeEE
Confidence 00 1112334444445555544457999999998651 1 11122111 2234456
Q ss_pred EEecCChhhhhh------hcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 299 ILTSRSRDLLCI------DMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 299 ivTtR~~~v~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
|.+|........ .......+.+.+.+.++..+++.....
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHH
Confidence 666654332100 011223789999999999999876653
No 191
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.66 E-value=0.00022 Score=82.30 Aligned_cols=152 Identities=17% Similarity=0.224 Sum_probs=85.0
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCC----CCE-EEEEEecCCCChHHHHHH
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKL----IDK-VVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~-~~wv~vs~~~~~~~~~~~ 229 (693)
.....++||+++++.++..+......-+.++|++|+|||++|+.+++....... .+. .+.++.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------ 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------ 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc------------
Confidence 345679999999999999997766667889999999999999999998633210 111 122222
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhh--
Q 036977 230 LASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL-- 307 (693)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v-- 307 (693)
+..... ..+.....+.......++.+|++| ...+..+.+...+ .....++|.||.....
T Consensus 245 -----g~~~~G--~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l----------~~~~v~~I~at~~~~~~~ 305 (758)
T 3pxi_A 245 -----GTKYRG--EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL----------ARGELQCIGATTLDEYRK 305 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCT----------TSSSCEEEEECCTTTTHH
T ss_pred -----cccccc--hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHH----------hcCCEEEEeCCChHHHHH
Confidence 000000 011112222222332367899999 2222222222222 1224556666654441
Q ss_pred ----hhhhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 308 ----LCIDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 308 ----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
..........+.+...+.++..+++.....
T Consensus 306 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 306 YIEKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 000111235799999999999999987654
No 192
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.65 E-value=0.00054 Score=67.67 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=84.9
Q ss_pred CCCccccchHHHHHHHHHHH---hc---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 155 KDNEAFDSRMKVFQDVMEAL---KD---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
.....++|.+..++.+.+.+ .. ...+-+.|+|++|+||||+|+.+++..... .+.++.+.-.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHHHHH
Confidence 34567888887777665543 21 123468899999999999999999876421 23343322111
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcc--ccCCCCCC----ccccccc----cc
Q 036977 223 PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELD--AVGIPSGD----VDEKDRE----DD 292 (693)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~--~l~~~~~~----~~~~~~~----~~ 292 (693)
. .. ....... ..+.+......+.++++|+++....-. .+...... +..++.. ..
T Consensus 84 ~--------------~~-~~~~~~~-~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 84 M--------------FV-GVGASRV-RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp S--------------CC-CCCHHHH-HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred H--------------hh-hhhHHHH-HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 0 00 0122222 222333333357899999985431100 00000000 0000000 02
Q ss_pred CCCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 293 QRRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 293 ~~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
..+..||.||.......... .....+.+...+.++..+++.....
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~ 196 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 196 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 34566777776654321111 1234788888888888888876653
No 193
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.64 E-value=1.5e-05 Score=71.33 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=35.7
Q ss_pred cccchHHHHHHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 159 AFDSRMKVFQDVMEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.++|+...+.++.+.+.. ....-|.|+|.+|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 468999999988887742 3334577999999999999999998754
No 194
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.61 E-value=2.1e-06 Score=81.61 Aligned_cols=73 Identities=21% Similarity=0.155 Sum_probs=42.0
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC-----CccccccceeccCCCCcccc-----cCCCCCcCEe
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS-----LEEVLHLEELNAKEEHIGPL-----FPRLSWLRLI 619 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~-----l~~l~~L~~L~l~~~~l~~~-----~~~L~~L~~L 619 (693)
+++|+.|.+.+|.- . ..|..+..+++|++|++++|.- +..+++|++|++++|.+..+ +..+++|++|
T Consensus 69 l~~L~~L~l~~n~l-~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 69 MENLRILSLGRNLI-K--KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HTTCCEEEEEEEEE-C--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred CCCCCEEECCCCCc-c--cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 45666666666532 2 2344555566677777766531 12445667777766555432 5666777777
Q ss_pred ecCCCc
Q 036977 620 DLPKLK 625 (693)
Q Consensus 620 ~L~~c~ 625 (693)
++++++
T Consensus 146 ~l~~N~ 151 (198)
T 1ds9_A 146 LLAGNP 151 (198)
T ss_dssp EECSCH
T ss_pred EecCCc
Confidence 776643
No 195
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.61 E-value=4.2e-05 Score=80.02 Aligned_cols=119 Identities=9% Similarity=0.068 Sum_probs=81.6
Q ss_pred cCcceeeecCCCCCCcCCCch----hhcCC-CCCCEEEecCCCCCc-----------c-ccccceeccCCCCcccc----
Q 036977 551 NNLRELVVDDCTNMSSAIPAN----LLRCL-NNLRYLEVRNCDSLE-----------E-VLHLEELNAKEEHIGPL---- 609 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~----~l~~L-~~L~~L~l~~c~~l~-----------~-l~~L~~L~l~~~~l~~~---- 609 (693)
++|+.|.+.+|.-.. ..+. .+..+ ++|++|++++|.--. . ..+|++|++++|.+...
T Consensus 80 ~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGNFLSY--KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSSCGGG--SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCccEEECcCCcCCh--HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 689999999886322 2233 24455 899999999886211 2 24899999999887743
Q ss_pred ----cCCCC-CcCEeecCCCcCccccc-c----cccCC-CCcCEEeccccccccc-----ccccc----cccceeecccc
Q 036977 610 ----FPRLS-WLRLIDLPKLKRFYNFT-G----NIIEL-PELRYLTIENCPDMET-----FISNS----TSVLHMTADNK 669 (693)
Q Consensus 610 ----~~~L~-~L~~L~L~~c~~l~~LP-~----~i~~L-~~L~~L~i~~C~~L~~-----lp~~~----~~l~~l~~~~~ 669 (693)
+..++ +|++|+|++| .+...+ . .+..+ ++|++|++++|. +.. +|..+ .+|+.|.++++
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 34554 8999999995 465433 2 33345 599999999984 666 55533 47889998887
Q ss_pred cccc
Q 036977 670 EAQK 673 (693)
Q Consensus 670 ~~~~ 673 (693)
.-..
T Consensus 236 ~l~~ 239 (362)
T 3goz_A 236 CLHG 239 (362)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 5433
No 196
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.55 E-value=0.00032 Score=75.82 Aligned_cols=157 Identities=12% Similarity=0.120 Sum_probs=88.7
Q ss_pred CccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 157 NEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
...++|.+..++.+.+.+.. ....-+.|+|++|+|||++|+.+++.... ..+.++++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEchH----
Confidence 45688999999998887742 34567899999999999999999887531 233444321
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcc---------ccCCCCCCccccccc-ccC
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELD---------AVGIPSGDVDEKDRE-DDQ 293 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~---------~l~~~~~~~~~~~~~-~~~ 293 (693)
+...+ .. .........+... ...++.+|+||+++....-. .+... +...+.. ...
T Consensus 274 ------l~~~~----~g-~~~~~~~~~f~~A-~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~---LL~~ld~~~~~ 338 (489)
T 3hu3_A 274 ------IMSKL----AG-ESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQ---LLTLMDGLKQR 338 (489)
T ss_dssp ------HHTSC----TT-HHHHHHHHHHHHH-HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHH---HHHHHHHSCTT
T ss_pred ------hhhhh----cc-hhHHHHHHHHHHH-HhcCCcEEEecchhhhccccccccchHHHHHHHH---HHHHhhccccC
Confidence 11000 00 1111122222222 33367899999985331100 00000 0000000 023
Q ss_pred CCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 294 RRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 294 ~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.+..||.||.......... .....+.+...+.++..+++..++.
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 4566777777654321111 2234789999999999999988764
No 197
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.55 E-value=0.00014 Score=74.25 Aligned_cols=105 Identities=17% Similarity=0.279 Sum_probs=63.0
Q ss_pred cccchHHHHHHHHHHHhcC---------CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHH
Q 036977 159 AFDSRMKVFQDVMEALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 229 (693)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++++....... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-VSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-HHH
Confidence 4679999988888877532 13589999999999999999999987543 22355666654433221 111
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 230 LASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
.++..... .... ....+...+......+++||+++..
T Consensus 95 ---l~g~~~~~-~~~~-~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 95 ---LIGAPPGY-VGYE-EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp ---HHCCCTTS-TTTT-TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred ---hcCCCCcc-cccc-ccchHHHHHHhCCCeEEEEeChhhc
Confidence 12322111 0000 0012334444434579999999765
No 198
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.54 E-value=0.00026 Score=65.08 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=49.6
Q ss_pred ccCCCCCcCEeecCCCcCcccccccc-cCCCCcCEEeccccccccccccc-c---cccceeeccccc
Q 036977 609 LFPRLSWLRLIDLPKLKRFYNFTGNI-IELPELRYLTIENCPDMETFISN-S---TSVLHMTADNKE 670 (693)
Q Consensus 609 ~~~~L~~L~~L~L~~c~~l~~LP~~i-~~L~~L~~L~i~~C~~L~~lp~~-~---~~l~~l~~~~~~ 670 (693)
.+..+++|++|+|++ +++..+|... ..+++|++|+++++ ++..+|.. + .+|+.|.+.+.+
T Consensus 49 ~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 49 VFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 388899999999999 6799999875 79999999999998 68899874 3 567777776643
No 199
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.51 E-value=0.0011 Score=71.20 Aligned_cols=161 Identities=14% Similarity=0.092 Sum_probs=87.0
Q ss_pred CCccccchHHHHHHHHHHH---hcC---------CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 156 DNEAFDSRMKVFQDVMEAL---KDD---------KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
....++|.++.++++.+.+ ... ..+-+.|+|++|+|||+||+.+++..... .+.++.+.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH
Confidence 3456788888776666554 221 23458899999999999999999876432 234444432211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccc--cCCCCCC----cccccccc----cC
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDA--VGIPSGD----VDEKDRED----DQ 293 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~--l~~~~~~----~~~~~~~~----~~ 293 (693)
. .. . .......+........+.+|++|+++....-.. +...-.. +.+++... ..
T Consensus 89 ~--------------~g-~-~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 F--------------VG-V-GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp C--------------TT-H-HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred H--------------hc-c-cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 00 0 111222222222223689999999875421000 0000000 00111100 23
Q ss_pred CCeEEEEecCChhhhhhh-cC---CCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 294 RRCTIILTSRSRDLLCID-MN---SQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 294 ~~~~IivTtR~~~v~~~~-~~---~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.+..||.||.....+... .. ....+.+...+.++..+++..++.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~ 200 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTR 200 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHH
Confidence 466788888776543211 11 234888999998888888876654
No 200
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.48 E-value=4.4e-05 Score=68.55 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=30.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecC
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQ 219 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 219 (693)
....++|+|.+|+|||||++.++...... .+ .++++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 55789999999999999999999987643 12 256666543
No 201
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.47 E-value=2.1e-05 Score=88.10 Aligned_cols=99 Identities=24% Similarity=0.324 Sum_probs=45.6
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCC----C---Cc----cccccceeccCCCC--c-----ccccC
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCD----S---LE----EVLHLEELNAKEEH--I-----GPLFP 611 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~----~---l~----~l~~L~~L~l~~~~--l-----~~~~~ 611 (693)
+++|+.|.+.+|.......++..+.++++|++|++++|. . +. .+++|++|+++.+. + ..++.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 345555555555433211122233345555555555553 0 11 23355555555433 1 11123
Q ss_pred CCCCcCEeecCCCcCcccccccccCCCCcCEEecccc
Q 036977 612 RLSWLRLIDLPKLKRFYNFTGNIIELPELRYLTIENC 648 (693)
Q Consensus 612 ~L~~L~~L~L~~c~~l~~LP~~i~~L~~L~~L~i~~C 648 (693)
++++|++|++++|..+..+|..+..+++|++|++.+|
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 3455555555555445555555555555555555444
No 202
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.34 E-value=7.3e-05 Score=74.51 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=35.1
Q ss_pred CccccchHHHHHHHHHHHh---c---------CCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 157 NEAFDSRMKVFQDVMEALK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
...++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++....
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4567777766666665443 1 12344779999999999999999998653
No 203
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.29 E-value=0.002 Score=66.32 Aligned_cols=52 Identities=27% Similarity=0.335 Sum_probs=40.7
Q ss_pred CCCCccccchHHHHHHHHHHHhc-----CCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 154 GKDNEAFDSRMKVFQDVMEALKD-----DKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+.....++|++..++.+-..+.. .....+.++|++|+||||||+.+++....
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34566788988888777666642 24577999999999999999999998743
No 204
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.00034 Score=71.91 Aligned_cols=93 Identities=12% Similarity=0.141 Sum_probs=59.6
Q ss_pred ccccceeccCCCCcccc----cCCCCCcCEeecCCCcCcccccccc-cCCCCcC-EEecccccccccccc-ccc---ccc
Q 036977 593 VLHLEELNAKEEHIGPL----FPRLSWLRLIDLPKLKRFYNFTGNI-IELPELR-YLTIENCPDMETFIS-NST---SVL 662 (693)
Q Consensus 593 l~~L~~L~l~~~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~i-~~L~~L~-~L~i~~C~~L~~lp~-~~~---~l~ 662 (693)
+++|++|++.++++..+ |.++++|+.++|.+ + ++.+|.+. ..+++|+ .+++.+ +++.++. .+. +|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~-n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH-N-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc-c-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 56788888887766555 78888888888886 3 77787654 5788888 888876 6777754 333 344
Q ss_pred eeeccccccccccchhhhhhhcchhhhc
Q 036977 663 HMTADNKEAQKLKSEENILVANQIQHLF 690 (693)
Q Consensus 663 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 690 (693)
.|.+.+. .......-.+..|..|+.+|
T Consensus 301 ~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 4443221 12222334556667777665
No 205
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.23 E-value=0.00011 Score=76.67 Aligned_cols=116 Identities=10% Similarity=0.025 Sum_probs=83.7
Q ss_pred cCcceeeecCCCCCCcCCCchh----hcCC-CCCCEEEecCCCCC-----------cccc-ccceeccCCCCcccc----
Q 036977 551 NNLRELVVDDCTNMSSAIPANL----LRCL-NNLRYLEVRNCDSL-----------EEVL-HLEELNAKEEHIGPL---- 609 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~~~~~~~----l~~L-~~L~~L~l~~c~~l-----------~~l~-~L~~L~l~~~~l~~~---- 609 (693)
++|+.|.+.+|.-.. ..+.. +..+ ++|++|++++|.-- ..++ +|++|++++|.+...
T Consensus 109 ~~L~~L~Ls~N~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 186 (362)
T 3goz_A 109 FTITVLDLGWNDFSS--KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE 186 (362)
T ss_dssp TTCCEEECCSSCGGG--SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCccEEECcCCcCCc--HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHH
Confidence 689999999886322 22333 4443 69999999998532 1344 899999999988654
Q ss_pred ----cCCC-CCcCEeecCCCcCccc-----ccccccCC-CCcCEEecccccccccccc--------cccccceeeccccc
Q 036977 610 ----FPRL-SWLRLIDLPKLKRFYN-----FTGNIIEL-PELRYLTIENCPDMETFIS--------NSTSVLHMTADNKE 670 (693)
Q Consensus 610 ----~~~L-~~L~~L~L~~c~~l~~-----LP~~i~~L-~~L~~L~i~~C~~L~~lp~--------~~~~l~~l~~~~~~ 670 (693)
+..+ ++|+.|+|++| .+.. +|..+..+ ++|++|++++| .+...+. ...+|+.|.+++|.
T Consensus 187 l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 187 LAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 3445 59999999995 4776 77777664 59999999998 4655432 33668888888876
No 206
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.15 E-value=0.0063 Score=60.47 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=85.3
Q ss_pred CccccchHHHHHHHHHHHh----c---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 157 NEAFDSRMKVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
...+.|-++.++.+.+.+. . .-.+-+.++|++|+||||||+.++..... ..+++....-.+.
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM 83 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh
Confidence 3456777777777766442 1 11233999999999999999999987643 2444443322110
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccC--CCCCC-ccccccc----ccCCCe
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVG--IPSGD-VDEKDRE----DDQRRC 296 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~--~~~~~-~~~~~~~----~~~~~~ 296 (693)
. . .........+.+......++++++|+++......... ..... ..+++.. ......
T Consensus 84 ~---------------~-~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 Y---------------V-GESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp T---------------T-HHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred h---------------h-hHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0 0 0011122233333222357899999997542110000 00000 0011111 122345
Q ss_pred EEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 297 TIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 297 ~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
-++.+|....+..... .....+.+...+.++..+++.....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 5677777776643222 2356888999999999999987653
No 207
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.13 E-value=0.0021 Score=66.14 Aligned_cols=87 Identities=20% Similarity=0.270 Sum_probs=62.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLRE 253 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 253 (693)
-.++.|+|++|+|||||+.+++...... -..++|++....++.. .+++++...+. +.+.++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 4799999999999999999999887643 2357888877766654 55666654322 3556666666666
Q ss_pred HHhcCCcEEEEEeCCCCcc
Q 036977 254 RLKQEKRVLIILDNIWTKL 272 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~~~~ 272 (693)
.++..+.-++|+|.+....
T Consensus 134 l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp HHHTSCCSEEEEECTTTCC
T ss_pred HhhhcCCCeEEehHhhhhc
Confidence 6655466799999986543
No 208
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.13 E-value=0.00077 Score=69.76 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=62.8
Q ss_pred CccccccceeccCC-CCcccc----cCCCCCcCEeecCCCcCccccccc-ccCCCCcCEEecccccccccccccc---cc
Q 036977 590 LEEVLHLEELNAKE-EHIGPL----FPRLSWLRLIDLPKLKRFYNFTGN-IIELPELRYLTIENCPDMETFISNS---TS 660 (693)
Q Consensus 590 l~~l~~L~~L~l~~-~~l~~~----~~~L~~L~~L~L~~c~~l~~LP~~-i~~L~~L~~L~i~~C~~L~~lp~~~---~~ 660 (693)
+..+++|++|+|++ |.+..+ |+.|++|+.|+|++ +.|..+|.. +.+|++|++|+++++ +|..+|... .+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~ 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCC
Confidence 55667899999996 887655 88999999999999 679988765 589999999999998 689998743 33
Q ss_pred cceeeccc
Q 036977 661 VLHMTADN 668 (693)
Q Consensus 661 l~~l~~~~ 668 (693)
|..|.+.+
T Consensus 105 L~~l~l~~ 112 (347)
T 2ifg_A 105 LQELVLSG 112 (347)
T ss_dssp CCEEECCS
T ss_pred ceEEEeeC
Confidence 77777755
No 209
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.12 E-value=0.0004 Score=72.18 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=31.6
Q ss_pred ccccceeccCCCCcccc-------cCCCCCcCEeecCCCcCccc-----ccccccCCCCcCEEeccccc
Q 036977 593 VLHLEELNAKEEHIGPL-------FPRLSWLRLIDLPKLKRFYN-----FTGNIIELPELRYLTIENCP 649 (693)
Q Consensus 593 l~~L~~L~l~~~~l~~~-------~~~L~~L~~L~L~~c~~l~~-----LP~~i~~L~~L~~L~i~~C~ 649 (693)
+|+|++|++.++.+... .+.+++|++|+|+. +.+.. ++.++.++++|+.|++++|.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 56666666666554321 23456666666654 33443 45555566666666666663
No 210
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.11 E-value=4.7e-05 Score=85.32 Aligned_cols=114 Identities=11% Similarity=0.178 Sum_probs=80.5
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcC-C-CCCCEEEecCCCCCc---------cccccceeccCCCCc--------cccc
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRC-L-NNLRYLEVRNCDSLE---------EVLHLEELNAKEEHI--------GPLF 610 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~-L-~~L~~L~l~~c~~l~---------~l~~L~~L~l~~~~l--------~~~~ 610 (693)
+++|+.|++.+|. +.. ..+..+.. + .+|++|++.+|..+. .+++|++|+++++.+ ..++
T Consensus 111 ~~~L~~L~L~~~~-i~~-~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 111 LRQLKSVHFRRMI-VSD-LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp CTTCCEEEEESCB-CCH-HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred CCCCCeEEeeccE-ecH-HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 6799999999884 221 12334544 3 449999999997442 579999999999764 3346
Q ss_pred CCCCCcCEeecCCCcCcc-----cccccccCCCCcCEEecccccccccccccc---cccceeecc
Q 036977 611 PRLSWLRLIDLPKLKRFY-----NFTGNIIELPELRYLTIENCPDMETFISNS---TSVLHMTAD 667 (693)
Q Consensus 611 ~~L~~L~~L~L~~c~~l~-----~LP~~i~~L~~L~~L~i~~C~~L~~lp~~~---~~l~~l~~~ 667 (693)
..+++|+.|+++++. +. .+|..+.++++|++|++.+|. +..+|..+ .+|+.|.+.
T Consensus 189 ~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEEC
T ss_pred hcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhccc
Confidence 678999999998743 43 556666789999999999985 55565433 345555543
No 211
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.10 E-value=0.00017 Score=66.10 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=60.2
Q ss_pred CCCCEEEecCCCCCccccccceeccCCCCcccccCCCCCcCEeecCCCcCccccc-ccccCC----CCcCEEeccccccc
Q 036977 577 NNLRYLEVRNCDSLEEVLHLEELNAKEEHIGPLFPRLSWLRLIDLPKLKRFYNFT-GNIIEL----PELRYLTIENCPDM 651 (693)
Q Consensus 577 ~~L~~L~l~~c~~l~~l~~L~~L~l~~~~l~~~~~~L~~L~~L~L~~c~~l~~LP-~~i~~L----~~L~~L~i~~C~~L 651 (693)
..|+.|++++|. +. +..+.. +..+++|+.|+|++|..++.-- ..+..+ ++|++|++++|+++
T Consensus 61 ~~L~~LDLs~~~-It-----------d~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 61 YKIQAIDATDSC-IM-----------SIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCEEEEEEESCC-CC-----------GGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred ceEeEEeCcCCC-cc-----------HHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 468999999996 32 111111 5679999999999999877421 112233 47999999999976
Q ss_pred cc-----ccccccccceeecccccccccc
Q 036977 652 ET-----FISNSTSVLHMTADNKEAQKLK 675 (693)
Q Consensus 652 ~~-----lp~~~~~l~~l~~~~~~~~~~~ 675 (693)
.. +. ...+|++|.+.+|+...-.
T Consensus 128 TD~Gl~~L~-~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 128 TDKGIIALH-HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CHHHHHHGG-GCTTCCEEEEESCTTCCCH
T ss_pred CHHHHHHHh-cCCCCCEEECCCCCCCCch
Confidence 55 33 3478999999999876544
No 212
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.09 E-value=0.0025 Score=70.00 Aligned_cols=165 Identities=22% Similarity=0.199 Sum_probs=80.6
Q ss_pred ccccchHHHHHHHHHHHh------cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLA 231 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 231 (693)
..++|-+...+.+.+.+. ......+.++|++|+||||||+.++...... | .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK--F---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE--E---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--e---EEEEecccchhhhhhhHHH
Confidence 346777777776655442 1245689999999999999999999987432 2 2233333222111111111
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhc--CCcEEEEEeCCCCccC------ccccCCCCCC-----cccccc--cccCCCe
Q 036977 232 SDLGMKFDLNDSIHHRASRLRERLKQ--EKRVLIILDNIWTKLE------LDAVGIPSGD-----VDEKDR--EDDQRRC 296 (693)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~~--~k~~LlVlDdv~~~~~------~~~l~~~~~~-----~~~~~~--~~~~~~~ 296 (693)
..++. ....+...+.. ...-+++||+++.... ...+...+.. +..... .......
T Consensus 156 ~~ig~----------~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 156 TYVGA----------MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp ------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred HHhcc----------CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 11111 11112222221 1334889999986521 1111111100 000000 0011456
Q ss_pred EEEEecCChhhhh-hhcCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 297 TIILTSRSRDLLC-IDMNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 297 ~IivTtR~~~v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.||.||....... ........+.+.+++.++-.+++..+..
T Consensus 226 ~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~ 267 (543)
T 3m6a_A 226 LFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLL 267 (543)
T ss_dssp EEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHH
T ss_pred EEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHH
Confidence 6777776654321 1111224789999999999999887653
No 213
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.07 E-value=0.0019 Score=73.47 Aligned_cols=159 Identities=11% Similarity=0.105 Sum_probs=85.8
Q ss_pred ccccchHHHHHHHHHHH----hc---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChH
Q 036977 158 EAFDSRMKVFQDVMEAL----KD---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQ 224 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L----~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 224 (693)
..+.|-++.+++|.+.+ .. ..++-|.++|++|+|||+||++++++.... .+.++.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH-----
Confidence 44556666665555544 21 245789999999999999999999876532 34444321
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcccc-CCCCCC--ccccc---ccc-cCCCeE
Q 036977 225 KIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAV-GIPSGD--VDEKD---RED-DQRRCT 297 (693)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l-~~~~~~--~~~~~---~~~-~~~~~~ 297 (693)
+. +. .. ...+.....+.+.-+...+++|++|+++....-..- ...... +.+++ ... ...+..
T Consensus 274 -----l~---sk-~~--gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 -----IM---SK-LA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----HH---SS-CT--THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -----hh---cc-cc--hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 10 00 00 112222333333333347899999999865211000 000000 00000 000 223455
Q ss_pred EEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 298 IILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 298 IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
||.||.........+ .....+++...+.++..++|..+..
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~ 386 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCS
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhc
Confidence 666776654432222 2345899999999999999987764
No 214
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.05 E-value=0.00022 Score=77.01 Aligned_cols=144 Identities=15% Similarity=0.207 Sum_probs=97.0
Q ss_pred cccccccccccCccccccccCCCcccccCCCCCCcccccCcceeeecCCCCCCc--CCCchhhcCCCCCCEEEecCCCCC
Q 036977 513 QKCYEEMIGFRDIKDLQLSHFPRLQEIWHGQALPVSFFNNLRELVVDDCTNMSS--AIPANLLRCLNNLRYLEVRNCDSL 590 (693)
Q Consensus 513 ~~l~~l~~~~~~l~~l~~~~~~~L~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~--~~~~~~l~~L~~L~~L~l~~c~~l 590 (693)
.+++.|.+.++.+...+.... -..+++|+.|.+.+|.-... ...+..+..+++|++|+++++.--
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~-------------~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 69 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAEL-------------LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 69 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHH-------------HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred ccceehhhhhcccCchhHHHH-------------HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC
Confidence 456677777666654332110 12267999999999873211 023567888999999999998621
Q ss_pred c--------ccc----ccceeccCCCCccc--------ccCCCCCcCEeecCCCcCccc-----ccccc-cCCCCcCEEe
Q 036977 591 E--------EVL----HLEELNAKEEHIGP--------LFPRLSWLRLIDLPKLKRFYN-----FTGNI-IELPELRYLT 644 (693)
Q Consensus 591 ~--------~l~----~L~~L~l~~~~l~~--------~~~~L~~L~~L~L~~c~~l~~-----LP~~i-~~L~~L~~L~ 644 (693)
. .++ +|++|++++|.+.. .+..+++|++|++++|. +.. +...+ ...++|++|+
T Consensus 70 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~ 148 (461)
T 1z7x_W 70 DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQ 148 (461)
T ss_dssp HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEE
Confidence 1 344 69999999988763 27899999999999965 542 22222 2367899999
Q ss_pred ccccccccc-----cccc---ccccceeecccccc
Q 036977 645 IENCPDMET-----FISN---STSVLHMTADNKEA 671 (693)
Q Consensus 645 i~~C~~L~~-----lp~~---~~~l~~l~~~~~~~ 671 (693)
+++| ++.. +|.. ..+|+.|.+.++.-
T Consensus 149 L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 149 LEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp CTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred CCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 9999 4554 3332 36788888887763
No 215
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.01 E-value=0.0044 Score=60.87 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=79.6
Q ss_pred CccccchHHHHHHHHHHH---hc---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChH
Q 036977 157 NEAFDSRMKVFQDVMEAL---KD---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQ 224 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 224 (693)
...++|.+..+..+.+.. .. .-.+-+.|+|++|+|||||++.++..... ..+.++..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~------ 83 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS------ 83 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH------
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHH------
Confidence 456777776655554432 21 01223899999999999999999987642 22333221
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcccc--CCCCCC----ccccccc----ccCC
Q 036977 225 KIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAV--GIPSGD----VDEKDRE----DDQR 294 (693)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l--~~~~~~----~~~~~~~----~~~~ 294 (693)
+ +.... . .........+.+......+.++++||++........ ...-.. +.+++.. ....
T Consensus 84 ~----~~~~~----~--~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 84 D----FVEMF----V--GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp H----HHHSC----T--THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred H----HHHHH----h--hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC
Confidence 1 11100 0 001112223333333225689999998533110000 000000 0000000 0122
Q ss_pred CeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhh
Q 036977 295 RCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 295 ~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
...++.||.......... .....+.+...+.++..+++...+
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 345666776665542221 234578999999998888887654
No 216
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.00 E-value=0.00068 Score=68.79 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHhcC---CceEEEEEecCCCcHHHHHHHHHHHhh-ccCCCCEEEEEEec
Q 036977 162 SRMKVFQDVMEALKDD---KLNIIGVYGMGGVGKTTLVKQVAKKVM-EDKLIDKVVMAEVT 218 (693)
Q Consensus 162 gR~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs 218 (693)
++...+..+.+++... ....+.|+|++|+|||+||+.+++... .. ...+++++++
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~~ 190 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEHH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEHH
Confidence 3555566666666542 247888999999999999999999876 43 2345555543
No 217
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.99 E-value=0.0037 Score=62.45 Aligned_cols=87 Identities=10% Similarity=0.145 Sum_probs=60.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHHH
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLRER 254 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~ 254 (693)
.++-|.|.+|+|||||+.+++.....+..-..++|++..+.++.. .+++++.+.+. +.+.++....+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 478999999999999999988876543112468999988877753 37778876543 34555551233333
Q ss_pred H---hcCCcEEEEEeCCCCc
Q 036977 255 L---KQEKRVLIILDNIWTK 271 (693)
Q Consensus 255 L---~~~k~~LlVlDdv~~~ 271 (693)
+ ...+.-++|+|-+...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 3 4557889999998755
No 218
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.99 E-value=0.0018 Score=62.50 Aligned_cols=119 Identities=15% Similarity=0.152 Sum_probs=64.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCC-------------------
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFD------------------- 239 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------- 239 (693)
-.+++|+|.+|+|||||++.++...... -..++|+.... ....+...+ ..++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 4689999999999999999999776543 23566766543 344443333 24432211
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCcE--EEEEeCCCCcc--CccccCCCCCCcccccccc-cCCCeEEEEecCChh
Q 036977 240 ----LNDSIHHRASRLRERLKQEKRV--LIILDNIWTKL--ELDAVGIPSGDVDEKDRED-DQRRCTIILTSRSRD 306 (693)
Q Consensus 240 ----~~~~~~~~~~~l~~~L~~~k~~--LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~-~~~~~~IivTtR~~~ 306 (693)
...+..+....+.+.+...++- ++|+|.+.... +.... ..+...+... ...|..||++|+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~----~~~~~~l~~~~~~~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMA----RKISYYLKRVLNKWNFTIYATSQYAI 169 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGH----HHHHHHHHHHHHHTTEEEEEEEC---
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHH----HHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 0114455555555555432344 99999987442 11000 0011111111 235788999998763
No 219
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.95 E-value=0.00018 Score=77.76 Aligned_cols=118 Identities=18% Similarity=0.122 Sum_probs=75.3
Q ss_pred ccCcceeeecCCCCCCcCCCchhhc-----CCCCCCEEEecCCCCCc-----------cccccceeccCCCCcccc----
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLR-----CLNNLRYLEVRNCDSLE-----------EVLHLEELNAKEEHIGPL---- 609 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~-----~L~~L~~L~l~~c~~l~-----------~l~~L~~L~l~~~~l~~~---- 609 (693)
+++|+.|.+.++.- .. ..+..+. ..++|++|++++|.--. .+++|++|++++|.+...
T Consensus 283 ~~~L~~L~Ls~n~i-~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 283 KESLKELSLAGNEL-GD-EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp CTTCCEEECTTCCC-HH-HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred CCCcceEECCCCCC-ch-HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 45777787777632 11 0111121 23678888888875221 347888888888776543
Q ss_pred ----cC-CCCCcCEeecCCCcCcc-----cccccccCCCCcCEEeccccccccc---------ccccccccceeeccccc
Q 036977 610 ----FP-RLSWLRLIDLPKLKRFY-----NFTGNIIELPELRYLTIENCPDMET---------FISNSTSVLHMTADNKE 670 (693)
Q Consensus 610 ----~~-~L~~L~~L~L~~c~~l~-----~LP~~i~~L~~L~~L~i~~C~~L~~---------lp~~~~~l~~l~~~~~~ 670 (693)
+. ..++|++|+|++| .+. .+|..+..+++|++|++++|+ +.. +|....++..|++.++.
T Consensus 361 l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 22 2678899999886 466 678888888899999999884 432 34444567777775544
Q ss_pred c
Q 036977 671 A 671 (693)
Q Consensus 671 ~ 671 (693)
-
T Consensus 439 ~ 439 (461)
T 1z7x_W 439 W 439 (461)
T ss_dssp C
T ss_pred c
Confidence 3
No 220
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.91 E-value=0.0035 Score=59.87 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=54.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCC-----------C-CCCCCHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMK-----------F-DLNDSIH 245 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----------~-~~~~~~~ 245 (693)
.-.++.|+|.+|+|||||+..++. .. -..++|++....++...+.. +.+..+.. . .......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~~---~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--LS---GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HH---CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--Hc---CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346999999999999999999998 21 35788888877556555443 33333321 1 1111122
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 246 HRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 246 ~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
.....+...+.. +.-++|+|.+...
T Consensus 93 ~~~~~~~~l~~~-~~~lliiD~~~~~ 117 (220)
T 2cvh_A 93 RVIGSLKKTVDS-NFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHCCT-TEEEEEEECCCCC
T ss_pred HHHHHHHHHhhc-CCCEEEEcCcHHH
Confidence 334444444433 4789999998654
No 221
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.90 E-value=0.0037 Score=64.40 Aligned_cols=87 Identities=18% Similarity=0.259 Sum_probs=60.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLR 252 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 252 (693)
.-.++.|+|.+|+||||||.+++...... -..++|++....++.. .++.++...+. +.+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34799999999999999999998776543 2468899988766543 35566654321 234555555555
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 036977 253 ERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 253 ~~L~~~k~~LlVlDdv~~~ 271 (693)
......+.-+||+|.+...
T Consensus 133 ~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHTTTCCSEEEEECGGGC
T ss_pred HHHhcCCCCEEEEcChHhh
Confidence 5554445679999998654
No 222
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.89 E-value=0.0054 Score=59.59 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=59.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccC----CCCEEEEEEecCCCChHHHHHHHHHHhCCCCC---------CCCCH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDK----LIDKVVMAEVTQNPDPQKIQDKLASDLGMKFD---------LNDSI 244 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 244 (693)
.-.++.|+|++|+|||||+..++....... .-..++|++....+....+ ..+++.++.... ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 347999999999999999999998633211 1357899988776555543 344555554321 11223
Q ss_pred HH---HHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 245 HH---RASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 245 ~~---~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
.+ ....+.+.+...+.-++|+|++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 32 2334555565446789999998754
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.88 E-value=0.0029 Score=72.84 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=86.3
Q ss_pred ccccchHHHHHHHHHHHhcC---------CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQD 228 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 228 (693)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++++.-.....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhcccccc---
Confidence 45789999998888877521 12379999999999999999999987432 23455666654321110
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccC--ccccC-----CCCCCcccccccccCCCeEEEEe
Q 036977 229 KLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLE--LDAVG-----IPSGDVDEKDREDDQRRCTIILT 301 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~--~~~l~-----~~~~~~~~~~~~~~~~~~~IivT 301 (693)
.. ...+...+......+|+||+++.... .+.+. ..+.+ ..-+.....+.+||+|
T Consensus 566 -------------~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~--~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 566 -------------TS----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTD--SKGRTVDFRNTILIMT 626 (758)
T ss_dssp -------------CC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-------CCBCTTCEEEEE
T ss_pred -------------cc----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEc--CCCCEeccCCeEEEEe
Confidence 00 11122223332446999999975521 11110 00000 0000012346788999
Q ss_pred cCChh-----h-------h-hhh-cCCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 302 SRSRD-----L-------L-CID-MNSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 302 tR~~~-----v-------~-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
|.... + . ... ......+.+.+++.++-.+++...+.
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHH
Confidence 87311 0 0 000 11235899999999998888877653
No 224
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.86 E-value=0.00048 Score=61.23 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=33.3
Q ss_pred ccccchHHHHHHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 158 EAFDSRMKVFQDVMEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..++|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3567888888888877642 333457799999999999999998654
No 225
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.84 E-value=0.0068 Score=60.43 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=80.9
Q ss_pred CCccccchHHHHHHHHHHHh---c---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 156 DNEAFDSRMKVFQDVMEALK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
....++|.+..+..+.+... . .-.+-+.|+|++|+|||||++.++..... ..+.++..
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH-----
Confidence 45567887776665554332 1 01123899999999999999999987642 23333321
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccc--cCCCCCC----ccccccc----ccC
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDA--VGIPSGD----VDEKDRE----DDQ 293 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~--l~~~~~~----~~~~~~~----~~~ 293 (693)
+ +.... . .........+.+......+.++++||++....... ....-.. +.+++.. ...
T Consensus 108 -~----~~~~~----~--~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 -D----FVEMF----V--GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp -H----HHHST----T--THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred -H----HHHHH----h--hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 1 11100 0 00111222333333322568999999853210000 0000000 0000000 012
Q ss_pred CCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhh
Q 036977 294 RRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 294 ~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
....++.+|....+..... .....+.+...+.++..+++...+
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 2345566666665432111 234588999999998888887665
No 226
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.83 E-value=0.0001 Score=77.21 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=66.9
Q ss_pred ccCcceeeecCCCCCCc--CCCchhh-cCCCCCCEEEecCCCCC-----------ccccccceeccCCCCcccc------
Q 036977 550 FNNLRELVVDDCTNMSS--AIPANLL-RCLNNLRYLEVRNCDSL-----------EEVLHLEELNAKEEHIGPL------ 609 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~--~~~~~~l-~~L~~L~~L~l~~c~~l-----------~~l~~L~~L~l~~~~l~~~------ 609 (693)
+++|+.|.+.+|.-... ..+...+ ...++|++|++++|.-- ...++|++|++++|.+...
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 46788888888742210 0011122 24678999999888521 2467899999998887542
Q ss_pred --cCCCCCcCEeecCCCcCcc-----cccccccCCCCcCEEeccccc
Q 036977 610 --FPRLSWLRLIDLPKLKRFY-----NFTGNIIELPELRYLTIENCP 649 (693)
Q Consensus 610 --~~~L~~L~~L~L~~c~~l~-----~LP~~i~~L~~L~~L~i~~C~ 649 (693)
+...++|+.|+|++|. +. .++..+...++|++|++++|+
T Consensus 205 ~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 5677889999999854 54 344555567889999999885
No 227
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.82 E-value=0.0011 Score=66.63 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=47.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEe--cCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEV--TQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLK 256 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (693)
.+++.|+|++|+|||+||.+++... -..++|+++ .+..+. .. .+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-----G~~VlyIs~~~eE~v~~---------------~~-~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-----GGKDKYATVRFGEPLSG---------------YN-TDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-----HTTSCCEEEEBSCSSTT---------------CB-CCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-----CCCEEEEEecchhhhhh---------------hh-cCHHHHHHHHHHHHh
Confidence 3577899999999999999998871 123456666 322111 00 345566666777777
Q ss_pred cCCcEEEEEeCCCCc
Q 036977 257 QEKRVLIILDNIWTK 271 (693)
Q Consensus 257 ~~k~~LlVlDdv~~~ 271 (693)
. .+ ++|+|++...
T Consensus 182 ~-~~-LLVIDsI~aL 194 (331)
T 2vhj_A 182 Q-HR-VIVIDSLKNV 194 (331)
T ss_dssp H-CS-EEEEECCTTT
T ss_pred h-CC-EEEEeccccc
Confidence 6 45 9999998754
No 228
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.76 E-value=0.0019 Score=66.96 Aligned_cols=115 Identities=18% Similarity=0.225 Sum_probs=77.0
Q ss_pred ccCcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCCC---------ccccccceeccCC--C------Ccc---cc
Q 036977 550 FNNLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDSL---------EEVLHLEELNAKE--E------HIG---PL 609 (693)
Q Consensus 550 ~~~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~l---------~~l~~L~~L~l~~--~------~l~---~~ 609 (693)
+++|+.|.+.+|.+.. ++. + .+++|+.|++..|..- ..+|+|++|++.. + .+. ..
T Consensus 171 ~P~L~~L~L~g~~~l~---l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLS---IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp CTTCCEEEEECCBTCB---CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred CCCCcEEEEeCCCCce---ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 5799999999885443 222 3 3899999999877521 1689999998742 1 121 22
Q ss_pred c--CCCCCcCEeecCCCcCcccccccc---cCCCCcCEEeccccccccc-----cccc---ccccceeeccccc
Q 036977 610 F--PRLSWLRLIDLPKLKRFYNFTGNI---IELPELRYLTIENCPDMET-----FISN---STSVLHMTADNKE 670 (693)
Q Consensus 610 ~--~~L~~L~~L~L~~c~~l~~LP~~i---~~L~~L~~L~i~~C~~L~~-----lp~~---~~~l~~l~~~~~~ 670 (693)
+ ..+++|++|+|.+|.--...+..+ ..+++|++|+++.+ .+.. ++.. ..+|+.|.+++|.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 3 358999999999876322222222 25899999999876 4554 4433 4678888887664
No 229
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.73 E-value=0.0066 Score=62.82 Aligned_cols=87 Identities=18% Similarity=0.253 Sum_probs=61.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFD-----LNDSIHHRASRLR 252 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 252 (693)
...++.|.|.+|+||||||..++...... -..++|++....++.. .++.++...+ .+.+.++....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 34689999999999999999998876543 2478999988766543 2455665432 1245566666666
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 036977 253 ERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 253 ~~L~~~k~~LlVlDdv~~~ 271 (693)
...+....-+||+|.+...
T Consensus 146 ~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHTTTCCSEEEEECTTTC
T ss_pred HHHhcCCCCEEEEeChHHh
Confidence 6665545679999998654
No 230
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.68 E-value=0.00048 Score=72.06 Aligned_cols=51 Identities=22% Similarity=0.163 Sum_probs=25.0
Q ss_pred hcCCCCCCEEEecCCCC-----------CccccccceeccCCCCcccc--------cCCCCCcCEeecCC
Q 036977 573 LRCLNNLRYLEVRNCDS-----------LEEVLHLEELNAKEEHIGPL--------FPRLSWLRLIDLPK 623 (693)
Q Consensus 573 l~~L~~L~~L~l~~c~~-----------l~~l~~L~~L~l~~~~l~~~--------~~~L~~L~~L~L~~ 623 (693)
+..+++|++|++++|.- +...++|++|++++|.+... +...++|++|+|++
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 34455555555555531 11334555555555554432 22345555555555
No 231
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.68 E-value=0.0097 Score=61.25 Aligned_cols=93 Identities=15% Similarity=0.250 Sum_probs=60.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccC----CCCEEEEEEecCCCChHHHHHHHHHHhCCCCC------------CC
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDK----LIDKVVMAEVTQNPDPQKIQDKLASDLGMKFD------------LN 241 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------~~ 241 (693)
...++.|+|.+|+||||||..++....... .-..++|++....++...+. .++..++.... ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 347999999999999999999998743311 13478999998877776654 44555554321 11
Q ss_pred CCHHHHHHHHHHHHhc--CCcEEEEEeCCCCc
Q 036977 242 DSIHHRASRLRERLKQ--EKRVLIILDNIWTK 271 (693)
Q Consensus 242 ~~~~~~~~~l~~~L~~--~k~~LlVlDdv~~~ 271 (693)
....+....+.+.+.. .+.-+||+|.+...
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 1122334445555654 46679999987543
No 232
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.66 E-value=0.0066 Score=62.60 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=58.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLR 252 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 252 (693)
...++.|.|.+|+||||||.+++...... -..++|++....++.. .+..++...+. +.+.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 34799999999999999999998876543 2468999988776643 24556554321 234455555555
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 036977 253 ERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 253 ~~L~~~k~~LlVlDdv~~~ 271 (693)
...+..+.-+||+|.+...
T Consensus 135 ~l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHHTCCSEEEEECGGGC
T ss_pred HHHhccCCCEEEEcCHHHh
Confidence 4444435669999997543
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.62 E-value=0.0017 Score=65.38 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.+..+.++|++|+|||+||+.+++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567889999999999999999998743
No 234
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.61 E-value=0.028 Score=60.53 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=83.3
Q ss_pred CCccccchHHHHHHHHHHH---hcC---------CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 156 DNEAFDSRMKVFQDVMEAL---KDD---------KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
....++|.++.+..+.+.. ... -.+-+.|+|++|+||||||+.++..... ..+.++.+.-...
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVEM 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTSS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHHh
Confidence 3456788887766665543 221 1234899999999999999999988642 2344444321110
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEEEeCCCCccCccc--cCCCCCC----ccccccc----
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQ---EKRVLIILDNIWTKLELDA--VGIPSGD----VDEKDRE---- 290 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~---~k~~LlVlDdv~~~~~~~~--l~~~~~~----~~~~~~~---- 290 (693)
. . ......+...++. ..+.++++|+++....-.. ....-.. +.+++..
T Consensus 104 --------------~---~--g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 104 --------------F---V--GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp --------------C---T--THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred --------------h---h--hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0 0 0011122223322 1358999999964321000 0000000 0011110
Q ss_pred ccCCCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhh
Q 036977 291 DDQRRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 291 ~~~~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
....+..|+.+|.......... .....+.+...+.++..+++..++
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 0223455666777665532111 123588899999998888887665
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.60 E-value=0.0036 Score=72.13 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=60.7
Q ss_pred ccccchHHHHHHHHHHHhc---------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHH
Q 036977 158 EAFDSRMKVFQDVMEALKD---------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQD 228 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 228 (693)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ...+.+++++-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh---
Confidence 4578999888888777642 1234789999999999999999998873 2345566654322100
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 229 KLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
+.+.+|.+... ...+....+...+......+++||+++..
T Consensus 530 -~~~l~g~~~g~--~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 -VSRLIGAPPGY--VGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp -CSSSCCCCSCS--HHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred -HhhhcCCCCCC--cCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 00111211111 01111122344444435689999999854
No 236
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.60 E-value=0.0091 Score=60.94 Aligned_cols=93 Identities=23% Similarity=0.301 Sum_probs=62.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccC----CCCEEEEEEecCCCChHHHHHHHHHHhCCCCC---------CCCCH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDK----LIDKVVMAEVTQNPDPQKIQDKLASDLGMKFD---------LNDSI 244 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 244 (693)
...++.|+|.+|+||||||..++....... .-..++|++....++...+. .+++.++.... ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 347999999999999999999988753221 12478999998887777654 44566655321 12233
Q ss_pred H---HHHHHHHHHHhc-CCcEEEEEeCCCCc
Q 036977 245 H---HRASRLRERLKQ-EKRVLIILDNIWTK 271 (693)
Q Consensus 245 ~---~~~~~l~~~L~~-~k~~LlVlDdv~~~ 271 (693)
+ +....+...+.. .+.-+||+|.+...
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 3 234455666654 46789999997643
No 237
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.52 E-value=0.01 Score=60.61 Aligned_cols=92 Identities=16% Similarity=0.280 Sum_probs=60.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc------------CCC--CEEEEEEecCCCChHHHHHHHHHHhCCCCC----
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED------------KLI--DKVVMAEVTQNPDPQKIQDKLASDLGMKFD---- 239 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---- 239 (693)
.-.++.|+|.+|+||||||..++...... +.. ..++|++....++..++.+ +++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 34799999999999999999998764211 101 4789999988877776553 4566655421
Q ss_pred -----CCCCHHH---HHHHHHHHHhc-CCcEEEEEeCCCC
Q 036977 240 -----LNDSIHH---RASRLRERLKQ-EKRVLIILDNIWT 270 (693)
Q Consensus 240 -----~~~~~~~---~~~~l~~~L~~-~k~~LlVlDdv~~ 270 (693)
...+.++ ....+.+.+.. .+.-+||+|.+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 1123332 34455555554 4567899998764
No 238
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.52 E-value=0.071 Score=56.15 Aligned_cols=90 Identities=22% Similarity=0.170 Sum_probs=52.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMKFDL---NDSIHHRASRLRE 253 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 253 (693)
+..+|.++|.+|+||||++..++.....++ ..+..++.... ....+-+.......+.+... ..+..........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 468999999999999999999998876542 24555554422 12233344445555553322 2334433333333
Q ss_pred HHhcCCcEEEEEeCCC
Q 036977 254 RLKQEKRVLIILDNIW 269 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~ 269 (693)
.+.....-++++|-..
T Consensus 174 ~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HTTTTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 3332234577888764
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.49 E-value=0.0041 Score=71.71 Aligned_cols=159 Identities=11% Similarity=0.101 Sum_probs=86.2
Q ss_pred CCccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 156 DNEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
....++|.+..++.+.+++.. .....|.|+|++|+||||||+.++...... .+.++.+.-.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~-----~i~v~~~~l~- 275 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPEIM- 275 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE-----EEEEEHHHHS-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc-----EEEEEchHhh-
Confidence 345688988888888877642 234679999999999999999998875322 2334332110
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCC--------cccccccc-cC
Q 036977 223 PQKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGD--------VDEKDRED-DQ 293 (693)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~--------~~~~~~~~-~~ 293 (693)
.... .........+.+......+.++++|+++....-... .... +...+... ..
T Consensus 276 -------------~~~~--g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~--~~~~~~~~~~~~Ll~ll~g~~~~ 338 (806)
T 1ypw_A 276 -------------SKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK--THGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp -------------SSST--THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC--CCSHHHHHHHHHHHHHHHSSCTT
T ss_pred -------------hhhh--hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc--ccchHHHHHHHHHHHHhhhhccc
Confidence 0000 111222222333322236789999998644210000 0000 00000000 12
Q ss_pred CCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhhh
Q 036977 294 RRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQHL 337 (693)
Q Consensus 294 ~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 337 (693)
.+..+|.||.......... .....+.+...+.++..+++...+.
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 3455666666543321111 1234678888899999999887654
No 240
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.39 E-value=0.19 Score=53.00 Aligned_cols=90 Identities=21% Similarity=0.164 Sum_probs=52.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMKFDL---NDSIHHRASRLRE 253 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 253 (693)
++.+|.++|.+|+||||++..++.....++ ..++.++.... +...+-++......+.+... ..+.........+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G--~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG--YKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 468999999999999999999998877542 24555554322 22333344445555543221 2344444433334
Q ss_pred HHhcCCcEEEEEeCCC
Q 036977 254 RLKQEKRVLIILDNIW 269 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~ 269 (693)
.......=++|+|-.-
T Consensus 177 ~a~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAG 192 (443)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEECCC
Confidence 4433234577888763
No 241
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.37 E-value=0.013 Score=56.20 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=55.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc---C-CCCEEEEEEecCCCChHHHHHHHHHHhCCCCC---------CCCCH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED---K-LIDKVVMAEVTQNPDPQKIQDKLASDLGMKFD---------LNDSI 244 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 244 (693)
.-.+++|+|++|+|||||++.++...... . ....++|++-...+.... ...+.+..+.... .....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 34799999999999999999998854331 1 134578887665444333 3344444443211 01111
Q ss_pred ---HHHHHHHHHHHh-----cCCcEEEEEeCCCCc
Q 036977 245 ---HHRASRLRERLK-----QEKRVLIILDNIWTK 271 (693)
Q Consensus 245 ---~~~~~~l~~~L~-----~~k~~LlVlDdv~~~ 271 (693)
......+...+. ..++-++|+|+....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 112344445554 446789999997653
No 242
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.29 E-value=0.0049 Score=58.15 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHhc---CCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 162 SRMKVFQDVMEALKD---DKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 162 gR~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.|++.++.+.+.+.. ....+|+|+|.+|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467778888888764 34579999999999999999999887654
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.29 E-value=0.017 Score=57.88 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=50.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMKFDLNDSIHHRASRLRERLK 256 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (693)
+..+++++|.+|+||||++..++.....+.. ..+.+++.... ....+-+....+..+.+.....+.......+. .+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LFS 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hhc
Confidence 4579999999999999999999988764211 24555554332 22333344444445544322233344433333 232
Q ss_pred cCCcEEEEEeC
Q 036977 257 QEKRVLIILDN 267 (693)
Q Consensus 257 ~~k~~LlVlDd 267 (693)
+.-++++|-
T Consensus 182 --~~dlvIiDT 190 (296)
T 2px0_A 182 --EYDHVFVDT 190 (296)
T ss_dssp --GSSEEEEEC
T ss_pred --CCCEEEEeC
Confidence 346888994
No 244
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.20 E-value=0.014 Score=61.12 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=58.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc----CCCCEEEEEEecCCCChHHHHHHHHHHhCCCCC---------CCCCH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED----KLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFD---------LNDSI 244 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 244 (693)
.-.++.|+|.+|+|||||+..++-..... ..-..++|++....+....+ ..+++.++.... ...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 34799999999999999999876443221 12356899988776665553 446666665321 11222
Q ss_pred H---HHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 245 H---HRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 245 ~---~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
+ .....+.+.+...+.-++|+|.+...
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhh
Confidence 2 23334445555446789999987543
No 245
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.18 E-value=0.0087 Score=64.31 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHHH---hcC--CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 158 EAFDSRMKVFQDVMEAL---KDD--KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
..++|.++.++.+..++ ..+ ..+-+.++|++|+|||++|+.+++....
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 67889998877655443 333 2357889999999999999999999753
No 246
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.16 E-value=0.011 Score=60.43 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=57.9
Q ss_pred CCCCCEEEecCCC--C-----CccccccceeccCCCCcccc----cCCCCCcC-EeecCCCcCccccccc-ccCCCCcCE
Q 036977 576 LNNLRYLEVRNCD--S-----LEEVLHLEELNAKEEHIGPL----FPRLSWLR-LIDLPKLKRFYNFTGN-IIELPELRY 642 (693)
Q Consensus 576 L~~L~~L~l~~c~--~-----l~~l~~L~~L~l~~~~l~~~----~~~L~~L~-~L~L~~c~~l~~LP~~-i~~L~~L~~ 642 (693)
+++|+.|++.++. . ...+++|+.+++.++ +..+ |.++++|+ .+.+.+ .++.++.. +..+++|++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence 6677777776542 1 224566777777664 4333 88889999 999986 67778654 568899999
Q ss_pred Eecccccccccccc-cccccceee
Q 036977 643 LTIENCPDMETFIS-NSTSVLHMT 665 (693)
Q Consensus 643 L~i~~C~~L~~lp~-~~~~l~~l~ 665 (693)
|++.+. +++.++. .+.++.+|+
T Consensus 302 l~l~~n-~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 302 VLATGD-KITTLGDELFGNGVPSK 324 (329)
T ss_dssp EEECSS-CCCEECTTTTCTTCCCC
T ss_pred EEeCCC-ccCccchhhhcCCcchh
Confidence 998654 6778766 344444443
No 247
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.05 E-value=0.48 Score=47.29 Aligned_cols=89 Identities=22% Similarity=0.184 Sum_probs=53.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLASDLGMKFD---LNDSIHHRASRLRER 254 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 254 (693)
..+++++|.+|+||||++..++...... -..+.+++...... ....++...+..+.+.- ...+.........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999887654 23466666543322 22334445555554321 123455554445555
Q ss_pred HhcCCcEEEEEeCCC
Q 036977 255 LKQEKRVLIILDNIW 269 (693)
Q Consensus 255 L~~~k~~LlVlDdv~ 269 (693)
++....=++++|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 542133478888753
No 248
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.00 E-value=0.0029 Score=58.83 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=56.3
Q ss_pred cCcceeeecCCCCCCc---CCCchhhcCCCCCCEEEecCCCCC-----------ccccccceeccCCCCcccc-------
Q 036977 551 NNLRELVVDDCTNMSS---AIPANLLRCLNNLRYLEVRNCDSL-----------EEVLHLEELNAKEEHIGPL------- 609 (693)
Q Consensus 551 ~~L~~L~i~~c~~~~~---~~~~~~l~~L~~L~~L~l~~c~~l-----------~~l~~L~~L~l~~~~l~~~------- 609 (693)
++|+.|.+.+|..+.. ..+...+...++|++|++++|.-- ...++|++|++++|.+...
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 4677777777633321 112344566777888888777521 1235677777777665442
Q ss_pred -cCCCCCcCEeec--CCCcCccc-----ccccccCCCCcCEEecccc
Q 036977 610 -FPRLSWLRLIDL--PKLKRFYN-----FTGNIIELPELRYLTIENC 648 (693)
Q Consensus 610 -~~~L~~L~~L~L--~~c~~l~~-----LP~~i~~L~~L~~L~i~~C 648 (693)
+...++|++|+| ++ +.+.. +...+...++|++|++++|
T Consensus 116 ~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 555667777777 43 33432 3334445566777777766
No 249
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.00 E-value=0.0068 Score=57.47 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 164 MKVFQDVMEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 164 ~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
++.++.|.+.+.. .+..+++|+|++|+|||||++.+......
T Consensus 5 ~~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 5 AALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3455666666643 45679999999999999999999988764
No 250
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.99 E-value=0.036 Score=53.68 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=53.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCC--------------------
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKF-------------------- 238 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-------------------- 238 (693)
-.++.|.|.+|+||||||..++...... -..++|++.... ..++.+.+ ..++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~--~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 97 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH--PVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTAGIG 97 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC--HHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHHH-HHcCCCHHHHhhCCcEEEEecchhhcc
Confidence 4689999999999999999887765433 246788776543 33433332 2232211
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 036977 239 ----------DLNDSIHHRASRLRERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 239 ----------~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~ 271 (693)
....+..+....+.+.+...+.-++|+|.+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 98 KSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp C--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred cccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 011344455556666654334568899987644
No 251
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.99 E-value=0.0061 Score=71.03 Aligned_cols=60 Identities=20% Similarity=0.339 Sum_probs=43.6
Q ss_pred cccchHHHHHHHHHHHhcC---------CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 159 AFDSRMKVFQDVMEALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..... -...+.++++.-
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~~ 627 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEY 627 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTTC
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhc
Confidence 5789999888888777421 23588999999999999999999987432 123455665543
No 252
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.97 E-value=0.014 Score=56.88 Aligned_cols=39 Identities=26% Similarity=0.184 Sum_probs=27.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh-ccCCCCEEEEEEec
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM-EDKLIDKVVMAEVT 218 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs 218 (693)
.-.+++|+|++|+|||||++.++.... .. -..++|+...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 347999999999999999999984432 11 2345555543
No 253
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.95 E-value=0.0063 Score=61.53 Aligned_cols=47 Identities=26% Similarity=0.272 Sum_probs=38.5
Q ss_pred ccccchHHHHHHHHHHHhc--------------CCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 158 EAFDSRMKVFQDVMEALKD--------------DKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..++|++..++.+...+.. .....+.++|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3478999999988877753 2356788999999999999999998863
No 254
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.91 E-value=0.0023 Score=66.05 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=63.5
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh--HHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Q 036977 176 DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP--QKIQDKLASDLGMKFDLNDSIHHRASRLRE 253 (693)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (693)
.....+++|+|+.|+|||||.+.+....... ....++ .+.++... ... ..++.+.... .........+..
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~-t~ed~~e~~~~~~-~~~v~q~~~~----~~~~~~~~~La~ 191 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHIL-TIEDPIEFVHESK-KCLVNQREVH----RDTLGFSEALRS 191 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEE-EEESSCCSCCCCS-SSEEEEEEBT----TTBSCHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEE-EccCcHHhhhhcc-ccceeeeeec----cccCCHHHHHHH
Confidence 3445699999999999999999998876543 122221 22221110 000 0000000000 111123446777
Q ss_pred HHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhh
Q 036977 254 RLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLL 308 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~ 308 (693)
.|.. ++=+|++|++.+.+.++.+... ...|..|++||+....+
T Consensus 192 aL~~-~PdvillDEp~d~e~~~~~~~~-----------~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 192 ALRE-DPDIILVGEMRDLETIRLALTA-----------AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HTTS-CCSEEEESCCCSHHHHHHHHHH-----------HHTTCEEEEEESCSSHH
T ss_pred Hhhh-CcCEEecCCCCCHHHHHHHHHH-----------HhcCCEEEEEEccChHH
Confidence 7776 7889999999865444332111 33466799999988764
No 255
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.85 E-value=0.028 Score=57.81 Aligned_cols=93 Identities=22% Similarity=0.286 Sum_probs=56.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCC----CEEEEEEecCCCChHHHHHHHHHHhCCCCC---------CCCC-
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLI----DKVVMAEVTQNPDPQKIQDKLASDLGMKFD---------LNDS- 243 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~- 243 (693)
.-.++.|+|.+|+|||||+..++......... ..++|++....+....+ ..+++..+.... ...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999999876321111 24589887665543333 334444433210 0111
Q ss_pred --HHHHHHHHHHHHhc-----CCcEEEEEeCCCCc
Q 036977 244 --IHHRASRLRERLKQ-----EKRVLIILDNIWTK 271 (693)
Q Consensus 244 --~~~~~~~l~~~L~~-----~k~~LlVlDdv~~~ 271 (693)
..+....+...+.. .+.-+||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 22334445555543 36789999998755
No 256
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.68 E-value=0.029 Score=69.55 Aligned_cols=86 Identities=22% Similarity=0.269 Sum_probs=63.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLR 252 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 252 (693)
+.+.+.|+|++|+|||+||.++....... =..++|+++...++... ++.++.+.+. +.+.++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 46799999999999999999998876653 34688888888777665 4556643222 344556666666
Q ss_pred HHHhcCCcEEEEEeCCCC
Q 036977 253 ERLKQEKRVLIILDNIWT 270 (693)
Q Consensus 253 ~~L~~~k~~LlVlDdv~~ 270 (693)
+..+..+..+||+|.+.-
T Consensus 1499 ~lvr~~~~~lVVIDsi~a 1516 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVAA 1516 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHhcCCCCEEEEcChhH
Confidence 666666788999999853
No 257
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.62 E-value=0.077 Score=53.73 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=38.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASD 233 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 233 (693)
.-.++.|.|.+|+||||||..++.....++ ..++|++.. -+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 447899999999999999999998766543 578888765 4455666655543
No 258
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.57 E-value=0.011 Score=58.36 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 158 EAFDSRMKVFQDVMEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
..++|++..+..+.+.+.. .....+.|+|.+|+|||++|+.+++..... -...+.++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 4578988888888776642 234567799999999999999999875432 123455666543
No 259
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.47 E-value=0.045 Score=55.01 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=51.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChH--HHHHHHHHHhCCCCC---CCCCHHHH-HHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQ--KIQDKLASDLGMKFD---LNDSIHHR-ASRL 251 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~---~~~~~~~~-~~~l 251 (693)
...+++|+|.+|+||||++..++...... -..+.+++... +... +-+...++..+.+.- ...+.... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45799999999999999999999887654 23455555432 2221 223344555554321 11223222 2344
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 036977 252 RERLKQEKRVLIILDNIW 269 (693)
Q Consensus 252 ~~~L~~~k~~LlVlDdv~ 269 (693)
...+.. +.-++++|..-
T Consensus 180 ~~a~~~-~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALAR-NKDVVIIDTAG 196 (306)
T ss_dssp HHHHHT-TCSEEEEEECC
T ss_pred HHHHhc-CCCEEEEECCC
Confidence 544554 44588889753
No 260
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.35 E-value=0.16 Score=53.76 Aligned_cols=90 Identities=21% Similarity=0.259 Sum_probs=51.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMKFDL---NDSIHHRASRLRE 253 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 253 (693)
+.++|.++|.+|+||||++..++.....+. -..+..+++... ....+.+.......+.+.-. ..+..........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 467999999999999999999998876541 124566666532 23333333344444433211 1344444444444
Q ss_pred HHhcCCcEEEEEeCC
Q 036977 254 RLKQEKRVLIILDNI 268 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv 268 (693)
.++....=++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 444212236777874
No 261
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.35 E-value=0.0098 Score=54.62 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+|.|+|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998754
No 262
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.33 E-value=0.0095 Score=54.27 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+|+|.|++|+||||+|+.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988754
No 263
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.33 E-value=0.0092 Score=61.56 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=37.2
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.....++|.+..+..+..........-+.|+|.+|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34566889988766655444433334588999999999999999998764
No 264
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.30 E-value=0.011 Score=55.58 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
....+++|+|++|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998775
No 265
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.29 E-value=0.011 Score=55.05 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
+..+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999875
No 266
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.28 E-value=0.013 Score=55.10 Aligned_cols=29 Identities=34% Similarity=0.469 Sum_probs=25.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 176 DDKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.....+|+|+|++|+||||+++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999998876
No 267
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.28 E-value=0.02 Score=58.71 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=54.8
Q ss_pred HHHHHHhc-CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCC-EEEEEEecCCCChHHHHHHHHHHhCCC---CCCCCC
Q 036977 169 DVMEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLID-KVVMAEVTQNPDPQKIQDKLASDLGMK---FDLNDS 243 (693)
Q Consensus 169 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~---~~~~~~ 243 (693)
++++.+.. .+-+.++|+|.+|+|||||++.+.+....+ +-+ .++++-+.+..... .++.+.+... .....+
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~-~~~v~~I~~lIGER~~Ev---~~~~~~~~~~vV~atadep 238 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN-HPDCVLMVLLIDERPEEV---TEMQRLVKGEVVASTFDEP 238 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH-CTTSEEEEEEESSCHHHH---HHHHTTCSSEEEEECTTSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc-CCCeeEEEEEecCChHHH---HHHHHHhCeEEEEeCCCCC
Confidence 34454432 345789999999999999999998876543 122 34567777654321 1222222100 001122
Q ss_pred HHHH------HHHHHHHHh-cCCcEEEEEeCCCCc
Q 036977 244 IHHR------ASRLRERLK-QEKRVLIILDNIWTK 271 (693)
Q Consensus 244 ~~~~------~~~l~~~L~-~~k~~LlVlDdv~~~ 271 (693)
.... .-.+-+++. .+++.||++||+...
T Consensus 239 ~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 239 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 2111 112233333 358999999998654
No 268
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.28 E-value=0.011 Score=55.47 Aligned_cols=27 Identities=41% Similarity=0.404 Sum_probs=23.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+..+|.|+|++|+||||+++.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998763
No 269
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.28 E-value=0.01 Score=54.77 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988653
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.27 E-value=0.0099 Score=54.26 Aligned_cols=20 Identities=35% Similarity=0.606 Sum_probs=18.9
Q ss_pred eEEEEEecCCCcHHHHHHHH
Q 036977 180 NIIGVYGMGGVGKTTLVKQV 199 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v 199 (693)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 271
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.27 E-value=0.074 Score=53.25 Aligned_cols=88 Identities=19% Similarity=0.222 Sum_probs=51.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh-HHHHHHHHHHhCCCCC---CCCCHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP-QKIQDKLASDLGMKFD---LNDSIHHRASRLRE 253 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 253 (693)
...+++|+|.+|+||||++..++...... -..+.+++....... ..-+..+.+..+...- ...+..++......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999999887654 234566655432211 1113344455554322 11344444333333
Q ss_pred HH-hcCCcEEEEEeCC
Q 036977 254 RL-KQEKRVLIILDNI 268 (693)
Q Consensus 254 ~L-~~~k~~LlVlDdv 268 (693)
.+ .. +.=++|+|..
T Consensus 175 ~~~~~-~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLE-ARDLILVDTA 189 (295)
T ss_dssp HHHHH-TCCEEEEECC
T ss_pred HHHhC-CCCEEEEeCC
Confidence 33 23 4458889985
No 272
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.22 E-value=0.023 Score=54.39 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 164 MKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 164 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
++..+.+...+.......|+|+|.+|+|||||+..+......
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 334445555555567889999999999999999999987543
No 273
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.21 E-value=0.17 Score=51.27 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=38.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecC-CCChHHHHHHHHHHhCC
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQ-NPDPQKIQDKLASDLGM 236 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~ 236 (693)
.+..+++|+|++|+||||+++.++....... ..+.++...- .....+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 4568999999999999999999998876541 2344444332 12333444555666664
No 274
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.13 E-value=0.12 Score=54.60 Aligned_cols=101 Identities=23% Similarity=0.332 Sum_probs=64.8
Q ss_pred HHHHHhc-CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHHHhCCC------C---
Q 036977 170 VMEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLASDLGMK------F--- 238 (693)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~------~--- 238 (693)
.++.+.. .+-+-++|+|.+|+|||+|+..+.+..... +-+.++++-+.+... ..++.+++...=... .
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 4454431 245678999999999999999999886432 346678888887654 566777776542221 0
Q ss_pred ---CCCCCHH------HHHHHHHHHHhc--CCcEEEEEeCCCCc
Q 036977 239 ---DLNDSIH------HRASRLRERLKQ--EKRVLIILDNIWTK 271 (693)
Q Consensus 239 ---~~~~~~~------~~~~~l~~~L~~--~k~~LlVlDdv~~~ 271 (693)
...+... ...-.+-+++.. +++.|+++||+...
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 0012221 223345566654 68999999998644
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.12 E-value=0.01 Score=54.22 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+|+|+|++|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988754
No 276
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.11 E-value=0.1 Score=53.10 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=38.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASD 233 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 233 (693)
.-.++.|.|.+|+||||+|..++...... -..++|++.- -+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHHH
Confidence 34789999999999999999999887653 3467777664 4556666666543
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.10 E-value=0.013 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAK 201 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~ 201 (693)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 278
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.07 E-value=0.025 Score=56.51 Aligned_cols=55 Identities=22% Similarity=0.068 Sum_probs=35.0
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhccC-CCCEEEEEEecCCCChHHHHHHHH
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDK-LIDKVVMAEVTQNPDPQKIQDKLA 231 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~ 231 (693)
.+..+|+|+|.+|+||||||+.+........ ....+..|+...-.-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 3567999999999999999999988766421 122344445544333334444443
No 279
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.02 E-value=0.0099 Score=56.77 Aligned_cols=113 Identities=11% Similarity=-0.005 Sum_probs=62.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL--NDSIHHRASRLRERL 255 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~L 255 (693)
+..++.|+|..|+||||++..+....... -..++.+...... . ....++..++..... .....+....+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 45789999999999999999988887654 2234444322211 1 112344555543322 122233334444333
Q ss_pred hcCCcEEEEEeCCCCcc--CccccCCCCCCcccccccccCCCeEEEEecCChh
Q 036977 256 KQEKRVLIILDNIWTKL--ELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRD 306 (693)
Q Consensus 256 ~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~ 306 (693)
..++.-+||+|++.... +++.+ +.....|..||+|-+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-----------~~L~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-----------NILAENGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-----------HHHHHTTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-----------HHHHhCCCeEEEEecccc
Confidence 33344599999986431 11222 111223778999888654
No 280
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.02 E-value=0.015 Score=59.53 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=37.8
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 158 EAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..++|+++.++.+...+..+ .-+.++|++|+|||+||+.+++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35789999999988887654 3578999999999999999998764
No 281
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.99 E-value=0.014 Score=54.93 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..+++|+|++|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 282
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.96 E-value=0.023 Score=54.18 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 162 SRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 162 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+.++..+.+...+...+.++|+|+|.+|+|||||+..+.....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444555555555556788999999999999999999988754
No 283
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.96 E-value=0.031 Score=59.14 Aligned_cols=92 Identities=20% Similarity=0.326 Sum_probs=54.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHHHhCCC------CCCCCCHHH-----
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLASDLGMK------FDLNDSIHH----- 246 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~----- 246 (693)
-+.++|+|.+|+|||||++.+......+. .+.++++.+.+..+ ..++..++...-... ....++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 35689999999999999999998876542 24456677766543 445554443320000 000111111
Q ss_pred -HHHHHHHHHhc--CCcEEEEEeCCCCc
Q 036977 247 -RASRLRERLKQ--EKRVLIILDNIWTK 271 (693)
Q Consensus 247 -~~~~l~~~L~~--~k~~LlVlDdv~~~ 271 (693)
..-.+.+++.. +++.|+++||+...
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~itR~ 257 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIFRF 257 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 12244555543 58999999998643
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.94 E-value=0.015 Score=53.84 Aligned_cols=26 Identities=38% Similarity=0.442 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+.|.|+|++|+||||+|+.+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998753
No 285
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.91 E-value=0.035 Score=56.55 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=33.7
Q ss_pred cchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 161 DSRMKVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 161 ~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
++-+...+.+++.+. .+....|.|+|++|+||||+++.++.....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344555666666653 345567999999999999999999988654
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.87 E-value=0.017 Score=53.59 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=23.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.+|.|.|++|+||||+|+.+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998763
No 287
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.87 E-value=0.017 Score=54.74 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=24.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+..+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998754
No 288
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.86 E-value=0.018 Score=52.70 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..+++|+|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 289
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.86 E-value=0.012 Score=54.50 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
++++|+|++|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998765
No 290
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.85 E-value=0.017 Score=54.70 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=24.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
....+++|+|++|+|||||++.+.....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3457999999999999999999998754
No 291
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.85 E-value=0.02 Score=51.99 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=24.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
..++++|+|..|+|||||+..+......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 46799999999999999999999887643
No 292
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.85 E-value=0.013 Score=55.06 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..+|+|.|++|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 293
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.84 E-value=0.13 Score=51.90 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHHhc----CCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 161 DSRMKVFQDVMEALKD----DKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 161 ~gR~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+|..+.+..+...+.. ..+.+|+|.|.+|+||||+++.+.....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444444444432 2356999999999999999999988765
No 294
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.83 E-value=0.017 Score=62.31 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 159 AFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.++|++..++.+...+..+ .-|.++|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4689999999888877654 4678999999999999999998764
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.83 E-value=0.019 Score=53.31 Aligned_cols=25 Identities=36% Similarity=0.394 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..+|.|.|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998875
No 296
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.81 E-value=0.018 Score=52.92 Aligned_cols=25 Identities=44% Similarity=0.602 Sum_probs=22.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.++|+|++|+|||||++.++.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999988753
No 297
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.78 E-value=0.02 Score=57.72 Aligned_cols=46 Identities=11% Similarity=0.136 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 159 AFDSRMKVFQDVMEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.++|+...+..+.+.+.. .....|.|+|.+|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 578888888888887743 3445677999999999999999998653
No 298
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.77 E-value=0.015 Score=54.81 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
...+|+|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998875
No 299
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.72 E-value=0.018 Score=53.53 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAK 201 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~ 201 (693)
.+++|+|++|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 300
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.69 E-value=0.019 Score=53.21 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.+|.|.|++|+||||+++.+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987653
No 301
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.69 E-value=0.019 Score=54.11 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..+++|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 302
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.69 E-value=0.019 Score=56.26 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+|.|+|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
No 303
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.69 E-value=0.017 Score=53.19 Aligned_cols=26 Identities=50% Similarity=0.483 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.++|.|+|++|+||||+++.+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999997753
No 304
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.67 E-value=0.034 Score=55.54 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhc-----CCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 165 KVFQDVMEALKD-----DKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 165 ~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+.+++++..+.. ....+|.|.|++|+||||+|+.+....
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444444432 245789999999999999999998764
No 305
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.63 E-value=0.03 Score=51.84 Aligned_cols=100 Identities=9% Similarity=0.076 Sum_probs=72.1
Q ss_pred chhhcCCCCCCEEEecCCCCCc------------cccccceeccCCCCcccc--------cCCCCCcCEeecCCCcCccc
Q 036977 570 ANLLRCLNNLRYLEVRNCDSLE------------EVLHLEELNAKEEHIGPL--------FPRLSWLRLIDLPKLKRFYN 629 (693)
Q Consensus 570 ~~~l~~L~~L~~L~l~~c~~l~------------~l~~L~~L~l~~~~l~~~--------~~~L~~L~~L~L~~c~~l~~ 629 (693)
...+...+.|++|++++|..+. ..++|++|++++|.+... +...++|++|+|++| .+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 3456778999999999984342 457899999999887553 556688999999985 4553
Q ss_pred -----ccccccCCCCcCEEec--cccccccc-----cccc---ccccceeecccccc
Q 036977 630 -----FTGNIIELPELRYLTI--ENCPDMET-----FISN---STSVLHMTADNKEA 671 (693)
Q Consensus 630 -----LP~~i~~L~~L~~L~i--~~C~~L~~-----lp~~---~~~l~~l~~~~~~~ 671 (693)
+...+...++|++|++ ++|. +.. +... ..+|+.|.+.+|.-
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 5667778889999999 6553 332 2222 25688888876643
No 306
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.62 E-value=0.27 Score=50.22 Aligned_cols=160 Identities=8% Similarity=-0.073 Sum_probs=91.5
Q ss_pred HHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Q 036977 172 EALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDSIHHRASRL 251 (693)
Q Consensus 172 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 251 (693)
..+.+.-.++..++|..|.||++.+..+.+..... .|+....+.+....+..++... +
T Consensus 11 ~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~---------------------~ 68 (343)
T 1jr3_D 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSL---------------------C 68 (343)
T ss_dssp HHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHH---------------------H
T ss_pred HHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHH---------------------h
Confidence 33433456799999999999999999998876533 2443222233333334333222 2
Q ss_pred HHHHhcCCcEEEEEeCCCC-c--cCccccCCCCCCcccccccccCCCeEEEEecCC-------hhhhhhhcCCCcEEEcC
Q 036977 252 RERLKQEKRVLIILDNIWT-K--LELDAVGIPSGDVDEKDREDDQRRCTIILTSRS-------RDLLCIDMNSQKIFWID 321 (693)
Q Consensus 252 ~~~L~~~k~~LlVlDdv~~-~--~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~-------~~v~~~~~~~~~~~~l~ 321 (693)
...---+++-++|+|+++. . ..++.+...+.. ..+++.+|++|.. ..+..........+...
T Consensus 69 ~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~--------p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~ 140 (343)
T 1jr3_D 69 QAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGL--------LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (343)
T ss_dssp HHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTT--------CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEEC
T ss_pred cCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhc--------CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEee
Confidence 1111112568899999876 3 233333222221 3346766666543 12323223345689999
Q ss_pred CCCHHHHHHHHHHhhhhhhhccccccccccCCCCCCCchhhHHHHHhhhcCCCccc
Q 036977 322 ALSKEEALHLAKLQHLEISYCESMEGVVDTTGWSERDEGKLIELKVFPKLHSLKLE 377 (693)
Q Consensus 322 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 377 (693)
+++.++....+.+.+... ...-..+.+..+++.++|-..+
T Consensus 141 ~l~~~~l~~~l~~~~~~~----------------g~~i~~~a~~~l~~~~~gdl~~ 180 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQL----------------NLELDDAANQVLCYCYEGNLLA 180 (343)
T ss_dssp CCCTTHHHHHHHHHHHHT----------------TCEECHHHHHHHHHSSTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHHHhchHHHH
Confidence 999988888877776432 1112245667788888876553
No 307
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.61 E-value=0.021 Score=51.84 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..++|+|.|+.|+||||+++.+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998754
No 308
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.59 E-value=0.016 Score=54.45 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.++++|+|++|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36789999999999999999988653
No 309
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.57 E-value=0.022 Score=55.51 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+..+|+|+|++|+|||||++.+++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999997754
No 310
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.57 E-value=0.024 Score=52.87 Aligned_cols=27 Identities=41% Similarity=0.415 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+..+|+|.|++|+||||+|+.+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988653
No 311
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.55 E-value=0.031 Score=57.97 Aligned_cols=45 Identities=20% Similarity=0.111 Sum_probs=36.4
Q ss_pred ccchHHHHHHHHHHHh-------------c--CCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 160 FDSRMKVFQDVMEALK-------------D--DKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 160 ~~gR~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
++|.+..++.+...+. . .....+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788888888887772 1 1346789999999999999999998863
No 312
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.55 E-value=0.11 Score=55.02 Aligned_cols=93 Identities=22% Similarity=0.335 Sum_probs=63.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHHHhCCC-------C------CCCCC
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLASDLGMK-------F------DLNDS 243 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~------~~~~~ 243 (693)
+-+-++|+|.+|+|||+|+..+.+..... +-+.++++-+.+... ..++.+++...=... . ..++.
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 44678999999999999999999986432 356788888887764 566777766542221 0 00122
Q ss_pred H------HHHHHHHHHHHhc--CCcEEEEEeCCCCc
Q 036977 244 I------HHRASRLRERLKQ--EKRVLIILDNIWTK 271 (693)
Q Consensus 244 ~------~~~~~~l~~~L~~--~k~~LlVlDdv~~~ 271 (693)
. ....-.+-+++++ +++.|+++||+...
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 1 2234456677765 68999999998644
No 313
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.53 E-value=0.024 Score=53.14 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=23.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHH
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
++..+|+|+|+.|+||||+++.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999875
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.51 E-value=0.023 Score=52.52 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
+...|+|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 315
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.51 E-value=0.021 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 316
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.50 E-value=0.023 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..+|+|.|++|+||||+|+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 317
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.50 E-value=0.019 Score=52.54 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+.|.|+|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998754
No 318
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.50 E-value=0.021 Score=53.72 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAK 201 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~ 201 (693)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 319
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.48 E-value=0.025 Score=50.79 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.+..+++|+|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445799999999999999999999876
No 320
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.48 E-value=0.024 Score=52.84 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+.++++|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999997643
No 321
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.45 E-value=0.032 Score=54.84 Aligned_cols=9 Identities=22% Similarity=-0.074 Sum_probs=4.7
Q ss_pred CcCEeecCC
Q 036977 615 WLRLIDLPK 623 (693)
Q Consensus 615 ~L~~L~L~~ 623 (693)
+|+.|+|.+
T Consensus 221 ~L~~L~L~~ 229 (267)
T 3rw6_A 221 KLEELWLDG 229 (267)
T ss_dssp CCSEEECTT
T ss_pred CcceEEccC
Confidence 455555554
No 322
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.43 E-value=0.02 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=19.3
Q ss_pred CceEEEEEecCCCcHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQV 199 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v 199 (693)
+..+++|+|++|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3478999999999999999963
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.42 E-value=0.019 Score=52.32 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=28.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEE
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMA 215 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 215 (693)
++++|+|.+|+|||||++.+.........-.+.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 689999999999999999999887764322344544
No 324
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.41 E-value=0.025 Score=55.33 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.0
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+..+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567999999999999999999988654
No 325
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.41 E-value=0.1 Score=64.01 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=63.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLR 252 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 252 (693)
.-.++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++.+.+. +.+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 34799999999999999999998887654 3478999888877653 25666655322 345566666666
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 036977 253 ERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 253 ~~L~~~k~~LlVlDdv~~~ 271 (693)
......+.-++|+|-+...
T Consensus 455 ~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHhcCCCEEEECCHHHh
Confidence 5555546679999998755
No 326
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.41 E-value=0.023 Score=54.41 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.+|+|+|++|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 327
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.40 E-value=0.022 Score=53.80 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...+++|+|++|+|||||++.+..-..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 357999999999999999999988753
No 328
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.39 E-value=0.098 Score=64.09 Aligned_cols=86 Identities=22% Similarity=0.266 Sum_probs=69.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLRE 253 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 253 (693)
-++|-|+|+.|+||||||.++....+.. =...+|++..+..+..- ++.+|.+.+. +...++....+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 4799999999999999999999876654 46789999988877664 7888877654 5666777788888
Q ss_pred HHhcCCcEEEEEeCCCCc
Q 036977 254 RLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~~~ 271 (693)
.++.+..-++|+|-|.-.
T Consensus 1504 ~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHcCCCCEEEEccHHhC
Confidence 888877789999987543
No 329
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.38 E-value=0.37 Score=51.76 Aligned_cols=90 Identities=23% Similarity=0.155 Sum_probs=48.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC-CChHHHHHHHHHHhCCCC---CCCCCHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN-PDPQKIQDKLASDLGMKF---DLNDSIHHRASRLRE 253 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~ 253 (693)
+..+|+|+|.+|+||||++..++.....++ ..+..|+.... +...+.++......+.+. ....+..+.......
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G--~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~ 177 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG--WKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVE 177 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHH
Confidence 357999999999999999999998876531 23555555322 222233344444444431 112333333322233
Q ss_pred HHhcCCcEEEEEeCCC
Q 036977 254 RLKQEKRVLIILDNIW 269 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~ 269 (693)
.+.....-++++|-.-
T Consensus 178 ~~~~~~~DvvIIDTpG 193 (504)
T 2j37_W 178 KFKNENFEIIIVDTSG 193 (504)
T ss_dssp HHHHTTCCEEEEEECC
T ss_pred HHHHCCCcEEEEeCCC
Confidence 3331133577778753
No 330
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.38 E-value=0.039 Score=57.54 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=35.4
Q ss_pred cccchHHHHHHHHHHHh------------------------------cCCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 159 AFDSRMKVFQDVMEALK------------------------------DDKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 159 ~~~gR~~~~~~l~~~L~------------------------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.++|.+..++.+...+. ......+.++|++|+|||++|+.+++...
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788888887776661 01235688999999999999999998763
No 331
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.38 E-value=0.029 Score=51.94 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=25.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
...+|.|+|++|+||||+++.+.......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999987643
No 332
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.37 E-value=0.02 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+.|.|+|++|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998774
No 333
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.36 E-value=0.23 Score=52.10 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=51.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHH--HHHHHHHHhCCCCCC---CCCHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQK--IQDKLASDLGMKFDL---NDSIHHRASRLR 252 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~--~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 252 (693)
+..+++++|.+|+||||++..++.....+ -..+..++.. .+.... .+.......+.+.-. ..+.........
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecc-ccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 35789999999999999999999887754 2345556553 233322 234445555543211 134444444444
Q ss_pred HHHhcCCcEEEEEeCC
Q 036977 253 ERLKQEKRVLIILDNI 268 (693)
Q Consensus 253 ~~L~~~k~~LlVlDdv 268 (693)
+.++....=++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 4443212237777864
No 334
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.35 E-value=0.029 Score=52.72 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+..+|+|.|+.|+||||+++.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 335
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.34 E-value=0.024 Score=53.53 Aligned_cols=25 Identities=48% Similarity=0.658 Sum_probs=22.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
...+|+|+|++|+||||+++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999865
No 336
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.33 E-value=0.028 Score=52.52 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=23.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..+|+|.|++|+||||+|+.+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998754
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.32 E-value=0.029 Score=52.98 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=24.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
..+|+|.|++|+||||+|+.+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 368999999999999999999988764
No 338
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.30 E-value=0.031 Score=56.21 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=25.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
+..+++|+|++|+||||+++.++......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999999887754
No 339
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.30 E-value=0.026 Score=56.98 Aligned_cols=42 Identities=24% Similarity=0.198 Sum_probs=30.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEec
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVT 218 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 218 (693)
....+++|+|.+|+|||||++.+..-......-..+.++...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 345799999999999999999999877642111235555543
No 340
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.30 E-value=0.028 Score=51.88 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...|+|.|++|+||||+++.+.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987653
No 341
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.30 E-value=0.11 Score=64.35 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=63.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDL-----NDSIHHRASRLR 252 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 252 (693)
...++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++.+.+. +.+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 45799999999999999999999887654 2468999888777654 25667664322 355666666666
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 036977 253 ERLKQEKRVLIILDNIWTK 271 (693)
Q Consensus 253 ~~L~~~k~~LlVlDdv~~~ 271 (693)
...+..+.-+||+|.+...
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 6555546779999998654
No 342
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.27 E-value=0.021 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+|.|+|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998754
No 343
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.24 E-value=0.029 Score=54.64 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.+..+|+|+|+.|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998865
No 344
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.20 E-value=0.021 Score=52.59 Aligned_cols=26 Identities=31% Similarity=0.352 Sum_probs=18.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..+|.|.|++|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987754
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.19 E-value=0.029 Score=55.12 Aligned_cols=26 Identities=38% Similarity=0.578 Sum_probs=23.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 346
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.17 E-value=0.033 Score=52.90 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=24.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+.++|.|.|++|+||||.|+.+++...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999999998754
No 347
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.15 E-value=0.13 Score=55.00 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=36.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLA 231 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 231 (693)
...++.|.|.+|+||||||..++....... -..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 346999999999999999999998876531 13577776543 3455555543
No 348
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.14 E-value=0.024 Score=54.06 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
...+++|+|++|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 349
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.13 E-value=0.039 Score=53.95 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988753
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.10 E-value=0.033 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..+|+|.|+.|+||||+|+.+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988753
No 351
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.09 E-value=0.026 Score=51.39 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 352
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.07 E-value=0.066 Score=51.93 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 163 RMKVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 163 R~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
....+.++..... ......|+|.|++|+||||+|+.+.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 11 TIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344444443332 2356789999999999999999998775
No 353
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.07 E-value=0.035 Score=52.43 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=26.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCE
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDK 211 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 211 (693)
..+|+|.|+.|+||||+++.+.+..... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999876543 3444
No 354
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.06 E-value=0.17 Score=53.13 Aligned_cols=96 Identities=10% Similarity=0.131 Sum_probs=56.6
Q ss_pred CcceeeecCCCCCCcCCCchhhcCCCCCCEEEecCCCC------------CccccccceeccCCCCcccc----cCCCCC
Q 036977 552 NLRELVVDDCTNMSSAIPANLLRCLNNLRYLEVRNCDS------------LEEVLHLEELNAKEEHIGPL----FPRLSW 615 (693)
Q Consensus 552 ~L~~L~i~~c~~~~~~~~~~~l~~L~~L~~L~l~~c~~------------l~~l~~L~~L~l~~~~l~~~----~~~L~~ 615 (693)
+|+.+.+.+ ++.. .....+.++++|+.+.+.+... ...+++|+.+.+.+ ++..+ |.++++
T Consensus 249 ~L~~i~lp~--~i~~-I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~ 324 (401)
T 4fdw_A 249 GITTVKLPN--GVTN-IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRK 324 (401)
T ss_dssp CCSEEEEET--TCCE-ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCS
T ss_pred CccEEEeCC--CccE-EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCC
Confidence 455555532 1221 2345677778888887755321 22556777777764 23333 777778
Q ss_pred cCEeecCCCcCcccccccc-cCCCCcCEEeccccccccccc
Q 036977 616 LRLIDLPKLKRFYNFTGNI-IELPELRYLTIENCPDMETFI 655 (693)
Q Consensus 616 L~~L~L~~c~~l~~LP~~i-~~L~~L~~L~i~~C~~L~~lp 655 (693)
|+.+.|.+ +++.++... .++ +|+.+++.+. .+..++
T Consensus 325 L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~ 361 (401)
T 4fdw_A 325 VTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVF 361 (401)
T ss_dssp CCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCC
T ss_pred ccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccc
Confidence 88888753 466665543 455 7888888765 344444
No 355
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.05 E-value=0.027 Score=53.08 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAK 201 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~ 201 (693)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 356
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.02 E-value=0.036 Score=52.44 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=24.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+..+|+|.|+.|+||||+++.+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999988754
No 357
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.01 E-value=0.032 Score=53.17 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...+++|+|++|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 347999999999999999999998754
No 358
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.00 E-value=0.038 Score=51.82 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..+|.|+|++|+||||+|+.+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998753
No 359
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.00 E-value=0.032 Score=51.96 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
...+|+|+|+.|+||||+++.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998763
No 360
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.95 E-value=0.036 Score=54.19 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...+|+|+|++|+||||+++.+.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456999999999999999999997754
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.94 E-value=0.036 Score=52.88 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+...|.|.|++|+||||+|+.+.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999988753
No 362
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.93 E-value=0.035 Score=50.22 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998754
No 363
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.92 E-value=0.078 Score=53.55 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=32.0
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecC
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQ 219 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 219 (693)
++.+||+|.|-|||||||.+..+..-.... -..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~--GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 467999999999999999999888877654 23467777763
No 364
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.87 E-value=0.03 Score=51.98 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+++|+|++|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998765
No 365
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.86 E-value=0.036 Score=51.47 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 366
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.86 E-value=0.31 Score=51.84 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=38.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASD 233 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 233 (693)
...++.|.|.+|+||||+|..++....... -..++|++.. -+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 346899999999999999999998876431 2357777665 3455666665543
No 367
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.81 E-value=0.043 Score=55.13 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=25.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
+..+++|+|++|+||||+++.++......
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999887653
No 368
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.81 E-value=0.038 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
...|.|.|++|+||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998864
No 369
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.79 E-value=0.084 Score=51.76 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=59.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecC-CCChHHHHHHHH--HHhCCCCCCCCCHHHHHHHHHH
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQ-NPDPQKIQDKLA--SDLGMKFDLNDSIHHRASRLRE 253 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~--~~l~~~~~~~~~~~~~~~~l~~ 253 (693)
.+-.+++|+|+.|+|||||++.+....... +.+.+++.-.. .+-.... ..++ ..++... ......+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~~------~~l~~~la~ 93 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGEDT------KSFADALRA 93 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTTTB------SCHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCCCH------HHHHHHHHH
Confidence 456799999999999999999998876542 23333322110 0000000 0000 0111111 123456677
Q ss_pred HHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhh
Q 036977 254 RLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v 307 (693)
.|.. ++-++++|++.+....... ++. ...|..|++||+...+
T Consensus 94 aL~~-~p~illlDEp~D~~~~~~~----------l~~-~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 94 ALRE-DPDVIFVGEMRDLETVETA----------LRA-AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHH-CCSEEEESCCCSHHHHHHH----------HHH-HHTTCEEEEEECCSSH
T ss_pred HHhh-CCCEEEeCCCCCHHHHHHH----------HHH-HccCCEEEEEeCcchH
Confidence 7766 6778999998744322211 011 2246678999988764
No 370
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.78 E-value=0.035 Score=53.77 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.. .+++|+|++|+|||||.+.++.-..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35 8999999999999999999987644
No 371
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.76 E-value=0.022 Score=53.92 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=22.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+|+|.|+.|+||||+++.+......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988754
No 372
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.74 E-value=0.1 Score=48.49 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988643
No 373
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.67 E-value=0.018 Score=53.30 Aligned_cols=120 Identities=19% Similarity=0.195 Sum_probs=60.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC---CChHHHHHHHHHHhC-------CCC--CCCC----
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN---PDPQKIQDKLASDLG-------MKF--DLND---- 242 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~-------~~~--~~~~---- 242 (693)
-..|-|++..|.||||.|-.++-..-.. =..+.++..-.. ..... +++.++ ... ..+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQF~Kg~~~~gE~~----~l~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQFIKGTWPNGERN----LLEPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEESSCCSSCCHHHH----HHGGGTCEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCCCCCccHHH----HHHhCCcEEEEcccccccCCCCcHHH
Confidence 3567777777899999999988776643 234555543322 22233 333342 111 1100
Q ss_pred --CHHHHHHHHHHHHhcCCcEEEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhh
Q 036977 243 --SIHHRASRLRERLKQEKRVLIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 243 --~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v 307 (693)
.........++.+..++-=|||||++-....+..+ +...+.+.+.. .....-||+|+|...-
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l--~~~ev~~~l~~-Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYL--PLEEVISALNA-RPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSS--CHHHHHHHHHT-SCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCC--CHHHHHHHHHh-CcCCCEEEEECCCCcH
Confidence 01122334555555545569999997432111111 00011112221 3345669999999854
No 374
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.66 E-value=0.059 Score=52.92 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=32.5
Q ss_pred cCCCCCcCEeecCCCcCcccccccccCCC--CcCEEeccccccccccc
Q 036977 610 FPRLSWLRLIDLPKLKRFYNFTGNIIELP--ELRYLTIENCPDMETFI 655 (693)
Q Consensus 610 ~~~L~~L~~L~L~~c~~l~~LP~~i~~L~--~L~~L~i~~C~~L~~lp 655 (693)
+..+++|+.|+|++ +.+..+ ..+..+. +|++|++.++|--..+|
T Consensus 192 ~~~l~~L~~L~Ls~-N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 192 VQKAPNLKILNLSG-NELKSE-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHHSTTCCEEECTT-SCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred HhhCCCCCEEECCC-CccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence 45789999999998 778776 3455555 89999999987433344
No 375
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.66 E-value=0.078 Score=53.50 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+..+|+|+|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999998754
No 376
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.60 E-value=0.074 Score=48.54 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=24.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.++++|+|..|+|||||++.+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987654
No 377
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.59 E-value=0.12 Score=51.64 Aligned_cols=52 Identities=25% Similarity=0.236 Sum_probs=35.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLAS 232 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 232 (693)
.-.+++|+|.+|+|||||++.++....... -..++|+.... +..++...+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHH
Confidence 457999999999999999999998876541 11466665543 33444444433
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.58 E-value=0.042 Score=52.13 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.|+|.|++|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987753
No 379
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.57 E-value=0.29 Score=51.95 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=36.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLA 231 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 231 (693)
+..++.|.|.+|+||||+|..++.....+ -..++|++.... ..++...++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHH
Confidence 34689999999999999999999887654 246777766533 334444443
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.57 E-value=0.041 Score=52.54 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
....|.|.|++|+||||+++.+.+...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346789999999999999999998754
No 381
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.57 E-value=0.033 Score=53.37 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999986543
No 382
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.55 E-value=0.097 Score=52.73 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=33.2
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCC
Q 036977 176 DDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNP 221 (693)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 221 (693)
....++|+|+|-||+||||+|..++...... -..+.-|++....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence 4467899999999999999999999887654 2357777776443
No 383
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.52 E-value=0.037 Score=53.47 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.+..-..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 457899999999999999999986544
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.52 E-value=0.047 Score=50.05 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+..+|+|+|+.|+||||+++.+......
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3468999999999999999999987643
No 385
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.49 E-value=0.043 Score=51.45 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 386
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.47 E-value=0.097 Score=55.76 Aligned_cols=42 Identities=29% Similarity=0.376 Sum_probs=30.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD 222 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 222 (693)
...+++|+|.+|+|||||++.++...... .+.+++.-...+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 35799999999999999999999887653 3344444334443
No 387
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.45 E-value=0.28 Score=47.34 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=32.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDK 229 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 229 (693)
-.++.|.|.+|+|||++|.+++.+...+ .-..++|++... +..++.+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~ 77 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRRE 77 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHH
Confidence 4689999999999999999977653322 123566666543 34444443
No 388
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.44 E-value=0.14 Score=51.71 Aligned_cols=39 Identities=36% Similarity=0.429 Sum_probs=30.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEec
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVT 218 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 218 (693)
+..+++|+|.+|+||||++..++...... -..+.+++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 45799999999999999999999887654 2345666544
No 389
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.41 E-value=0.058 Score=56.93 Aligned_cols=48 Identities=25% Similarity=0.266 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHHHhc--------------CCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 158 EAFDSRMKVFQDVMEALKD--------------DKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
..++|.++.++.+...+.. ...+-+.++|++|+||||+|+.++.....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3467888888887766622 13456899999999999999999988653
No 390
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.40 E-value=0.056 Score=51.15 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567999999999999999999998765
No 391
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.39 E-value=0.034 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
-.+++|+|++|+|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999887
No 392
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.37 E-value=0.046 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 393
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.36 E-value=0.031 Score=53.80 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=16.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHH-HHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVA-KKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 203 (693)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 653
No 394
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.34 E-value=0.37 Score=52.18 Aligned_cols=52 Identities=21% Similarity=0.143 Sum_probs=37.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLAS 232 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 232 (693)
.-.++.|.|.+|+||||||..++.....+. -..++|++... +..++...++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHH
Confidence 346899999999999999999998876531 23577877654 45566665543
No 395
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.30 E-value=0.075 Score=54.59 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=25.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
...+++|+|++|+||||+++.++......
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 35799999999999999999999987653
No 396
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.29 E-value=0.042 Score=61.19 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCCccccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 155 KDNEAFDSRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 34567899999988888777654 57899999999999999999987654
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.23 E-value=0.054 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAK 201 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~ 201 (693)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 398
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.20 E-value=0.045 Score=53.29 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=23.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998764
No 399
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.15 E-value=0.045 Score=52.88 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=23.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||++.++.-..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 447899999999999999999987654
No 400
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.14 E-value=0.094 Score=48.83 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcC-CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 164 MKVFQDVMEALKDD-KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 164 ~~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..-+..+..++.+- +-..+.|+|++|+||||+|.++++...
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33455566655431 224799999999999999999998864
No 401
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.13 E-value=0.045 Score=53.79 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999987643
No 402
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.08 E-value=0.049 Score=53.12 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
.-.+++|+|++|+|||||.+.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999984
No 403
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.08 E-value=0.041 Score=54.43 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+-.+++|+|++|+|||||++.+..-..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 347899999999999999999987543
No 404
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.07 E-value=0.13 Score=53.06 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=30.2
Q ss_pred HHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 167 FQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 167 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
...++..+. ..+..+|+|+|.+|+|||||+..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444555554 356789999999999999999999887654
No 405
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.04 E-value=0.058 Score=53.64 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAK 201 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~ 201 (693)
...+|+|+|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 406
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.99 E-value=0.061 Score=51.60 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
..+|+|.|++|+||||+++.+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988754
No 407
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.99 E-value=0.061 Score=50.53 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+|+|.|+.|+||||+++.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988654
No 408
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.97 E-value=0.044 Score=53.07 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999987643
No 409
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.96 E-value=0.05 Score=53.45 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 457999999999999999999987643
No 410
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.96 E-value=0.038 Score=52.45 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999987643
No 411
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.95 E-value=0.044 Score=53.68 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999986543
No 412
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.93 E-value=0.059 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
.-.+++|+|++|+|||||.+.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999985
No 413
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.93 E-value=0.059 Score=54.65 Aligned_cols=25 Identities=40% Similarity=0.400 Sum_probs=22.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.+|+|.|+.|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 414
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.92 E-value=0.045 Score=53.89 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||++.+..-..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 447899999999999999999987543
No 415
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.89 E-value=0.046 Score=52.51 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+-.+++|+|++|+|||||.+.++.-..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346899999999999999999987654
No 416
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.79 E-value=0.056 Score=52.45 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999987643
No 417
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.78 E-value=0.054 Score=52.93 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999987643
No 418
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.78 E-value=0.22 Score=53.30 Aligned_cols=44 Identities=30% Similarity=0.504 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 162 SRMKVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 162 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
+..+.+..+...+.+++ +.+.|.|.+|+||||++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 45556666666665543 489999999999999999999887654
No 419
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.78 E-value=0.049 Score=53.00 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||++.++.-..
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999987644
No 420
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.70 E-value=0.071 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 421
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.70 E-value=0.071 Score=50.67 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...|.|.|++|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 422
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.60 E-value=0.059 Score=52.84 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.-.+++|+|++|+|||||.+.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45789999999999999999998654
No 423
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.60 E-value=0.072 Score=50.89 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 424
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.60 E-value=0.053 Score=52.76 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 346899999999999999999887543
No 425
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.57 E-value=0.075 Score=50.02 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+|.|.|++|+||||.|+.+++...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998754
No 426
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.57 E-value=0.081 Score=50.91 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...|.|.|+.|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998854
No 427
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.55 E-value=0.072 Score=53.66 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.+|.|+|+.|+||||||+.+++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999874
No 428
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.55 E-value=0.072 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.++|+|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 429
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.55 E-value=0.061 Score=53.13 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||++.++.-..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999987644
No 430
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.55 E-value=0.072 Score=49.40 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.++|+|.+|+|||||.+.+.....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 35789999999999999999987643
No 431
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.49 E-value=0.062 Score=52.91 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 446899999999999999999987543
No 432
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.46 E-value=0.056 Score=53.60 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 446899999999999999999987654
No 433
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.45 E-value=0.11 Score=54.65 Aligned_cols=93 Identities=18% Similarity=0.166 Sum_probs=57.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhcc-CCCC-EEEEEEecCCCC-hHHHHHHHHHH--hCCC----CCCCCCHH----
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMED-KLID-KVVMAEVTQNPD-PQKIQDKLASD--LGMK----FDLNDSIH---- 245 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~-~~~wv~vs~~~~-~~~~~~~i~~~--l~~~----~~~~~~~~---- 245 (693)
-+-++|.|.+|+|||+|+.+++++.... ++-+ .++++-+.+... ..++.+++... +... ...+.+..
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 3457899999999999999999886542 1112 567777876643 55666665442 1100 00012221
Q ss_pred --HHHHHHHHHHhc--CCcEEEEEeCCCCc
Q 036977 246 --HRASRLRERLKQ--EKRVLIILDNIWTK 271 (693)
Q Consensus 246 --~~~~~l~~~L~~--~k~~LlVlDdv~~~ 271 (693)
...-.+-+++.. +++.|+++||+...
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 123456677763 68999999998643
No 434
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.43 E-value=0.056 Score=52.75 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999987654
No 435
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.43 E-value=0.049 Score=54.42 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
+..+|+|.|..|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999988654
No 436
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.40 E-value=0.078 Score=53.10 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.+-.+++|+|++|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345799999999999999999999876
No 437
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.36 E-value=0.095 Score=59.60 Aligned_cols=159 Identities=14% Similarity=0.200 Sum_probs=77.7
Q ss_pred CccccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCCh
Q 036977 157 NEAFDSRMKVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (693)
...+.|-++.++.+.+.+.- ...+-+.++|++|.|||.+|+++++..... ++.++ .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~----~ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK----G 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECC----H
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEec----c
Confidence 34556777777776665421 123567899999999999999999986532 22222 1
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccCcccc-----CCCCCC-cccccccc----cC
Q 036977 224 QKIQDKLASDLGMKFDLNDSIHHRASRLRERLKQEKRVLIILDNIWTKLELDAV-----GIPSGD-VDEKDRED----DQ 293 (693)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k~~LlVlDdv~~~~~~~~l-----~~~~~~-~~~~~~~~----~~ 293 (693)
.+ ++. .+-. .+ +.....+.+.-+...+++|++|+++....-..- ...... +.+++... ..
T Consensus 545 ~~----l~s----~~vG-es-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 545 PE----LLT----MWFG-ES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp HH----HHT----TTCS-SC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred ch----hhc----cccc-hH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 11 111 1111 22 234444444444447899999998865211000 000000 01111111 22
Q ss_pred CCeEEEEecCChhhhhhhc----CCCcEEEcCCCCHHHHHHHHHHhh
Q 036977 294 RRCTIILTSRSRDLLCIDM----NSQKIFWIDALSKEEALHLAKLQH 336 (693)
Q Consensus 294 ~~~~IivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~ 336 (693)
.+.-||.||.........+ .....+.+..-+.++..++|..+.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 3344555665554332111 234577777777777777776554
No 438
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.24 E-value=0.069 Score=53.98 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..++|.|+|+.|+|||||+..+++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999764
No 439
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.24 E-value=0.078 Score=52.31 Aligned_cols=24 Identities=42% Similarity=0.546 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.++|+|.+|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998754
No 440
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.21 E-value=0.089 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..++|.|+|+.|+||||||..+++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999773
No 441
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.06 E-value=0.11 Score=50.77 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...++.+.|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998776
No 442
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.02 E-value=0.17 Score=48.55 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
....|+|.|+.|+||||+++.+.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3578999999999999999999998765
No 443
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.02 E-value=0.15 Score=55.59 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=32.5
Q ss_pred ccchHHHHHHHHHHH--hcCCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 160 FDSRMKVFQDVMEAL--KDDKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 160 ~~gR~~~~~~l~~~L--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.+.+.+....+.... .-.+..+++|+|++|+|||||++.+......
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 344444444444433 1234579999999999999999999998764
No 444
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.00 E-value=0.08 Score=49.35 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
-.|+|+|.+|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 445
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.97 E-value=0.16 Score=54.75 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHHHH--hcCCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 158 EAFDSRMKVFQDVMEAL--KDDKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+....|.+..+.+.+.. ...+..+|.+.|++|+||||+|+.+.+....
T Consensus 372 P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 33445666666666655 2335578999999999999999999999764
No 446
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.85 E-value=0.073 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
-.+++|+|++|+|||||.+.++.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998664
No 447
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.83 E-value=0.1 Score=47.86 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=21.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.+.+|+|..|+|||||+.+++.-.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999998754
No 448
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.79 E-value=0.096 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 449
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.67 E-value=0.12 Score=49.71 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...+|+|+|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999987643
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.67 E-value=0.32 Score=46.72 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=27.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEE
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVM 214 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 214 (693)
...|.|.|+.|+||||+++.+.+..... ++..+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~ 61 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITR 61 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeee
Confidence 4689999999999999999999988754 3553333
No 451
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.67 E-value=0.099 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 452
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.63 E-value=0.092 Score=52.30 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 457999999999999999999987654
No 453
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.60 E-value=0.096 Score=51.96 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=31.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhccCC--------CCEEEEEEecCC
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVMEDKL--------IDKVVMAEVTQN 220 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~vs~~ 220 (693)
.-.++.|+|.+|+|||||+..++........ -..++|++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 3479999999999999999999876543210 134677776654
No 454
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.58 E-value=0.33 Score=59.06 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+-..++|||+.|+|||||++.+......
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 4578999999999999999999876543
No 455
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.55 E-value=0.12 Score=45.90 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+-|+++|.+|+|||||++.+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998653
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.54 E-value=0.13 Score=49.81 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=23.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
...|+|.|..|+||||+++.+.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998863
No 457
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.53 E-value=0.25 Score=50.58 Aligned_cols=46 Identities=30% Similarity=0.382 Sum_probs=34.4
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHhh--ccCCCCEEEEEEecCCCCh
Q 036977 176 DDKLNIIGVYGMGGVGKTTLVKQVAKKVM--EDKLIDKVVMAEVTQNPDP 223 (693)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~~ 223 (693)
+...+++.+.|.||+||||+|..++.... .. -..+.-|+.....+.
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~~l 62 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAHNL 62 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCCh
Confidence 45568999999999999999999988876 33 235667776644433
No 458
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.51 E-value=0.38 Score=44.81 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
.|+|-|.-|+||||.++.+++....+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47888999999999999999988765
No 459
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.51 E-value=0.15 Score=53.30 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
...+++|+|.+|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 5579999999999999999999984
No 460
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.50 E-value=0.24 Score=48.61 Aligned_cols=39 Identities=18% Similarity=0.431 Sum_probs=30.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
++|+|.|-||+||||+|..++...... -..+..|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCCC
Confidence 578889999999999999999887754 235677777543
No 461
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.46 E-value=0.25 Score=49.14 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=31.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
.++|+|.|-||+||||+|..++...... -..+..|+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 4688889999999999999999887654 235677777543
No 462
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.42 E-value=0.1 Score=53.48 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 346899999999999999999997654
No 463
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.41 E-value=0.071 Score=51.20 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
+..+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998765
No 464
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.40 E-value=0.29 Score=55.15 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=34.4
Q ss_pred HHHHHHhcCCcE--EEEEeCCCCccCccccCCCCCCcccccccccCCCeEEEEecCChhhhhhhcCCCcEEEc
Q 036977 250 RLRERLKQEKRV--LIILDNIWTKLELDAVGIPSGDVDEKDREDDQRRCTIILTSRSRDLLCIDMNSQKIFWI 320 (693)
Q Consensus 250 ~l~~~L~~~k~~--LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v~~~~~~~~~~~~l 320 (693)
.+-+.|.. ++- +++||+..+..+...... +.+.++.....|..||++|++...+. . .+.++.+
T Consensus 212 ~iArAL~~-~p~~~lLlLDEPtsgLD~~~~~~----l~~~l~~l~~~g~tvi~vtHd~~~~~--~-~d~ii~l 276 (670)
T 3ux8_A 212 RLATQIGS-RLTGVLYVLDEPSIGLHQRDNDR----LIATLKSMRDLGNTLIVVEHDEDTML--A-ADYLIDI 276 (670)
T ss_dssp HHHHHHHT-CCCSCEEEEECTTTTCCGGGHHH----HHHHHHHHHHTTCEEEEECCCHHHHH--H-CSEEEEE
T ss_pred HHHHHHhh-CCCCCEEEEECCccCCCHHHHHH----HHHHHHHHHHcCCEEEEEeCCHHHHh--h-CCEEEEe
Confidence 44445544 344 999999775533221100 11122222334677999999988653 2 5556655
No 465
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.38 E-value=0.36 Score=45.52 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=24.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
..|.+.|+.|+||||+++.+.+.....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999988765
No 466
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.35 E-value=0.084 Score=48.51 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 467
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.33 E-value=0.1 Score=52.90 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
+.++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999998764
No 468
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.32 E-value=0.24 Score=54.05 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred eEEEEEecCCCcHHHHHHH--HHHHhhccCCCCEEEEEEecCCCChHHHHHHHHHHhCCCCCCCCC--------------
Q 036977 180 NIIGVYGMGGVGKTTLVKQ--VAKKVMEDKLIDKVVMAEVTQNPDPQKIQDKLASDLGMKFDLNDS-------------- 243 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~--v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-------------- 243 (693)
.+++|+|.+|+|||||++. +..-.... .+.++++..+ ...-.....+.++...+....
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~---~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~ 113 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEE---TPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPE 113 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSS---CHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeC---CHHHHHHHHHHcCCChHHhhccCcEEEEecCcccc
Q ss_pred ---------HHHHHHHHHHHHhcCCcEEEEEeCC
Q 036977 244 ---------IHHRASRLRERLKQEKRVLIILDNI 268 (693)
Q Consensus 244 ---------~~~~~~~l~~~L~~~k~~LlVlDdv 268 (693)
..+....+...|..+++-+++||.+
T Consensus 114 ~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~ 147 (525)
T 1tf7_A 114 GQEVVGGFDLSALIERINYAIQKYRARRVSIDSV 147 (525)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECS
T ss_pred hhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCH
No 469
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.27 E-value=0.12 Score=53.42 Aligned_cols=27 Identities=26% Similarity=0.108 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
....+++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355799999999999999999999754
No 470
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.26 E-value=0.12 Score=53.06 Aligned_cols=27 Identities=37% Similarity=0.470 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.+..-..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 457899999999999999999987644
No 471
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.24 E-value=0.28 Score=46.41 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=28.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQN 220 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 220 (693)
.|.+.|.||+||||+|..++.....++ + .+..+.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~-~V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-V-RVMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-C-CEEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-C-CEEEEEeCCC
Confidence 478899999999999999998876542 3 3455555543
No 472
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.21 E-value=0.26 Score=51.72 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=25.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 176 DDKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.....+++|+|+.|+||||+.+.+......
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 455679999999999999999999987654
No 473
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.18 E-value=0.098 Score=55.29 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=29.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEec
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVT 218 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 218 (693)
..+|+|+|.+|+||||++..++.....+ -..+..++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecc
Confidence 4689999999999999999999887644 1345556553
No 474
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.14 E-value=0.3 Score=49.68 Aligned_cols=48 Identities=27% Similarity=0.276 Sum_probs=35.5
Q ss_pred hcCCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCChH
Q 036977 175 KDDKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPDPQ 224 (693)
Q Consensus 175 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 224 (693)
.+...+++.+.|-||+||||+|..++...... -..++-|+.....+..
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHH
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChh
Confidence 34457888999999999999999999887654 3456777776544433
No 475
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.11 E-value=0.079 Score=53.16 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||++.+..-..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 457999999999999999999987543
No 476
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.09 E-value=0.12 Score=45.87 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 036977 181 IIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
-|+++|.+|+|||||++.+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998763
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.09 E-value=0.15 Score=52.91 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.++|+|.|+.|+||||||..++....
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 36899999999999999999998743
No 478
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.08 E-value=0.099 Score=55.20 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
....+|.|+|++|+||||+|+.+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999999999998754
No 479
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.08 E-value=0.18 Score=52.86 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=57.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhcc--------CCCC-EEEEEEecCCCC-hHHHHHHHHHH--hCC------CCCC
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMED--------KLID-KVVMAEVTQNPD-PQKIQDKLASD--LGM------KFDL 240 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~~-~~~~~~~i~~~--l~~------~~~~ 240 (693)
-+-++|.|.+|+|||+|+.+++++.... ++-+ .++++-+.+... ..++.+++... +.. ..+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3567899999999999999999886541 1222 567777876643 55565655432 100 0111
Q ss_pred CCCHH-----HHHHHHHHHHhc--CCcEEEEEeCCCCc
Q 036977 241 NDSIH-----HRASRLRERLKQ--EKRVLIILDNIWTK 271 (693)
Q Consensus 241 ~~~~~-----~~~~~l~~~L~~--~k~~LlVlDdv~~~ 271 (693)
.... ...-.+-+++.. +++.|+++||+...
T Consensus 227 -p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~ 263 (464)
T 3gqb_B 227 -PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNY 263 (464)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 1111 223456677763 68999999998643
No 480
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.05 E-value=0.18 Score=54.03 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=58.8
Q ss_pred HHHHHhc-CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCEEEEEEecCCCC-hHHHHHHHHH----HhCCC------
Q 036977 170 VMEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVTQNPD-PQKIQDKLAS----DLGMK------ 237 (693)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~----~l~~~------ 237 (693)
+++.+.. .+-+-++|.|..|+|||+|+..+.+.. +-+.++++-+.+..+ ..++.+++-+ ..+..
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtv 292 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTV 292 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEE
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceE
Confidence 4455531 245778999999999999999987763 246788898988765 4555555422 01100
Q ss_pred ---CCCCCCHHH------HHHHHHHHHhc-CCcEEEEEeCCCCc
Q 036977 238 ---FDLNDSIHH------RASRLRERLKQ-EKRVLIILDNIWTK 271 (693)
Q Consensus 238 ---~~~~~~~~~------~~~~l~~~L~~-~k~~LlVlDdv~~~ 271 (693)
...++.... ..-.+-+++++ +++.|+++|++...
T Consensus 293 vV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~ 336 (588)
T 3mfy_A 293 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRW 336 (588)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTC
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHH
Confidence 000122221 12234444443 58899999998644
No 481
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.98 E-value=0.12 Score=53.02 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 347899999999999999999987644
No 482
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.97 E-value=0.32 Score=46.18 Aligned_cols=29 Identities=31% Similarity=0.329 Sum_probs=25.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.....|.|.|+.|+||||+++.+.+....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45678999999999999999999998765
No 483
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.97 E-value=0.5 Score=48.90 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=43.1
Q ss_pred ccccchHHHHHHHHHHHh------------cCCceEEEEEe-cCCCcHHHHHHHHHHHhhccCCCCEEEEEEec
Q 036977 158 EAFDSRMKVFQDVMEALK------------DDKLNIIGVYG-MGGVGKTTLVKQVAKKVMEDKLIDKVVMAEVT 218 (693)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G-~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 218 (693)
..+..-+..+.++++... +.+.++|+|+| -||+||||+|..++...... -..++.+++.
T Consensus 110 ~kyq~~~~i~~ei~~~~~e~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD~D 181 (373)
T 3fkq_A 110 CKYQRVDVIFKQILGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLNIE 181 (373)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHTCCCCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred eccCCHHHHHHHHHHHHhhcccccccccccCCCceEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 345566777777776651 13568999986 99999999999998887654 2457788876
No 484
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.93 E-value=0.33 Score=51.23 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=58.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhccCC--CCEEEEEEecCCCC-hHHHHHHHHHHhCCCC------CCCCCHH----
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMEDKL--IDKVVMAEVTQNPD-PQKIQDKLASDLGMKF------DLNDSIH---- 245 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~------~~~~~~~---- 245 (693)
-+-++|.|.+|+|||+|+..++++....+. =+.++++-+.+... ..++.+++...=.... ..++...
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 456788999999999999999998765321 13577887877643 5666666654311100 0012221
Q ss_pred --HHHHHHHHHHh--cCCcEEEEEeCCCCc
Q 036977 246 --HRASRLRERLK--QEKRVLIILDNIWTK 271 (693)
Q Consensus 246 --~~~~~l~~~L~--~~k~~LlVlDdv~~~ 271 (693)
...-.+-+++. .+++.|+++||+...
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~DsltR~ 261 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDITNY 261 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 22334556665 368999999997543
No 485
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.92 E-value=0.42 Score=45.07 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhhcc
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKVMED 206 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 206 (693)
...|+|.|+.|+||||+++.+.+.....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987654
No 486
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.85 E-value=0.13 Score=45.98 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
--|+|+|.+|+|||||++.+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998753
No 487
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.84 E-value=0.27 Score=50.47 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
+..+|+|+|.+|+|||||.+.+......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 3689999999999999999999986544
No 488
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.80 E-value=0.26 Score=50.30 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=25.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhc
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVME 205 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 205 (693)
.+..+++|+|.+|+|||||.+.+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 46689999999999999999999987654
No 489
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.79 E-value=0.11 Score=48.06 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 179 LNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
.+.|.|.|++|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998763
No 490
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.73 E-value=0.14 Score=52.50 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 447899999999999999999987644
No 491
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.71 E-value=0.14 Score=47.03 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
..|+|+|.+|+|||||.+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 492
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.69 E-value=0.13 Score=53.19 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 346899999999999999999987654
No 493
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.66 E-value=0.15 Score=52.51 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 447899999999999999999987644
No 494
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.63 E-value=0.16 Score=47.46 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=21.7
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 176 DDKLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..+.--|+|+|.+|+|||||...+....
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3445678899999999999999988654
No 495
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.62 E-value=0.18 Score=52.26 Aligned_cols=109 Identities=15% Similarity=0.188 Sum_probs=59.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhhccCCCCE-EEEEEecCCCChHHHHHHHHH--HhCCCCCCCCCHHHHHHHHHH
Q 036977 177 DKLNIIGVYGMGGVGKTTLVKQVAKKVMEDKLIDK-VVMAEVTQNPDPQKIQDKLAS--DLGMKFDLNDSIHHRASRLRE 253 (693)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~ 253 (693)
....+++|+|+.|+||||+++.+....... ..+ ++++.-.-......- ..++. .++... ......+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~~~------~~~~~~l~~ 204 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGEDT------KSFADALRA 204 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCS-SSEEEEEEBTTTB------SCSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccC-ceEEEeeecCCCH------HHHHHHHHH
Confidence 455799999999999999999999876542 122 323321111000000 00000 011111 112346667
Q ss_pred HHhcCCcEEEEEeCCCCccCccc-cCCCCCCcccccccccCCCeEEEEecCChhh
Q 036977 254 RLKQEKRVLIILDNIWTKLELDA-VGIPSGDVDEKDREDDQRRCTIILTSRSRDL 307 (693)
Q Consensus 254 ~L~~~k~~LlVlDdv~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~IivTtR~~~v 307 (693)
.+.. .+-+|++|++.+.+.... +.. ...|..|+.|++...+
T Consensus 205 ~L~~-~pd~illdE~~d~e~~~~~l~~------------~~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 205 ALRE-DPDVIFVGEMRDLETVETALRA------------AETGHLVFGTLHTNTA 246 (372)
T ss_dssp HTTS-CCSEEEESCCCSHHHHHHHHHH------------HTTTCEEEECCCCCSH
T ss_pred Hhhh-CcCEEEECCCCCHHHHHHHHHH------------HhcCCEEEEEECcchH
Confidence 7766 677899999875543322 211 2346668888887654
No 496
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.59 E-value=0.29 Score=44.78 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHH
Q 036977 168 QDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKK 202 (693)
Q Consensus 168 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (693)
..+.+ +...+..-|+|+|.+|+|||||.+.+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34445 33455677899999999999999999854
No 497
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.52 E-value=0.14 Score=47.04 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
--|+++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998763
No 498
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.49 E-value=0.14 Score=46.38 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 036977 180 NIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
..|+|+|.+|+|||||.+.+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998653
No 499
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.48 E-value=0.18 Score=46.48 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKV 203 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (693)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998753
No 500
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.46 E-value=0.14 Score=52.96 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhh
Q 036977 178 KLNIIGVYGMGGVGKTTLVKQVAKKVM 204 (693)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 204 (693)
.-.+++|+|++|+|||||.+.++.-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 346899999999999999999987644
Done!