BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036979
(212 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7ZE19|RF2_CAMC1 Peptide chain release factor 2 OS=Campylobacter concisus (strain
13826) GN=prfB PE=3 SV=1
Length = 366
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 14/94 (14%)
Query: 57 RECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLA 116
++ ++ TY++SG GGQH NK E+A+R+ H+PTG++ Q DRSQHKNRA A+ L + L
Sbjct: 236 KDLKIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRLY 295
Query: 117 LKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVG 150
L+L++ +++ SE+G
Sbjct: 296 --------------ELELMKQQEASNSVEKSEIG 315
>sp|Q30TP0|RF2_SULDN Peptide chain release factor 2 OS=Sulfurimonas denitrificans
(strain ATCC 33889 / DSM 1251) GN=prfB PE=3 SV=1
Length = 365
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 57 RECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
R+ + TY+SSG GGQH NK E+A+R+ H+ TGV+ Q DRSQHKNRA A+ L + L
Sbjct: 236 RDIRVDTYRSSGAGGQHVNKTESAIRITHIATGVVVQCQNDRSQHKNRATAMKMLKSRL 294
>sp|A0RQM7|RF2_CAMFF Peptide chain release factor 2 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=prfB PE=3 SV=1
Length = 369
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 9/83 (10%)
Query: 51 TDDELLRECE-----MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRA 105
DD++ E E + Y++SG GGQH NK E+AVR+ H+PTG++ Q DRSQHKN+A
Sbjct: 225 VDDDIAIEIEEKDLRLDYYRASGAGGQHVNKTESAVRITHIPTGIVVQCQNDRSQHKNKA 284
Query: 106 LAL----SRLPTFLALKVRSSVN 124
A+ SRL F +K + + N
Sbjct: 285 TAMKMLKSRLYEFELMKQQEANN 307
>sp|A5IED7|RF1_LEGPC Peptide chain release factor 1 OS=Legionella pneumophila (strain
Corby) GN=prfA PE=3 SV=1
Length = 362
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 9/87 (10%)
Query: 34 FHHCSC-----PASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPT 88
H +C P + N +++ D+L + TY+SSG GGQH NK ++A+R+ H+PT
Sbjct: 198 VHTSACTVAIMPEVDEINDIQINPDDL----RIDTYRSSGAGGQHVNKTDSAIRITHIPT 253
Query: 89 GVIAQAAEDRSQHKNRALALSRLPTFL 115
GV+ + ++RSQHKNRA A+S L T L
Sbjct: 254 GVVVECQDERSQHKNRAKAMSLLKTRL 280
>sp|Q5WUB1|RF1_LEGPL Peptide chain release factor 1 OS=Legionella pneumophila (strain
Lens) GN=prfA PE=3 SV=1
Length = 362
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 9/87 (10%)
Query: 34 FHHCSC-----PASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPT 88
H +C P + N +++ D+L + TY+SSG GGQH NK ++A+R+ H+PT
Sbjct: 198 VHTSACTVAIMPEVDEINDIQINPDDL----RIDTYRSSGAGGQHVNKTDSAIRITHIPT 253
Query: 89 GVIAQAAEDRSQHKNRALALSRLPTFL 115
GV+ + ++RSQHKNRA A+S L T L
Sbjct: 254 GVVVECQDERSQHKNRAKAMSLLKTRL 280
>sp|Q5ZT29|RF1_LEGPH Peptide chain release factor 1 OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=prfA PE=3 SV=1
Length = 362
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 9/87 (10%)
Query: 34 FHHCSC-----PASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPT 88
H +C P + N +++ D+L + TY+SSG GGQH NK ++A+R+ H+PT
Sbjct: 198 VHTSACTVAIMPEVDEINDIQINPDDL----RIDTYRSSGAGGQHVNKTDSAIRITHIPT 253
Query: 89 GVIAQAAEDRSQHKNRALALSRLPTFL 115
GV+ + ++RSQHKNRA A+S L T L
Sbjct: 254 GVVVECQDERSQHKNRAKAMSLLKTRL 280
>sp|Q5X2V3|RF1_LEGPA Peptide chain release factor 1 OS=Legionella pneumophila (strain
Paris) GN=prfA PE=3 SV=1
Length = 362
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 9/87 (10%)
Query: 34 FHHCSC-----PASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPT 88
H +C P + N +++ D+L + TY+SSG GGQH NK ++A+R+ H+PT
Sbjct: 198 VHTSACTVAIMPEVDEINDIQINPDDL----RIDTYRSSGAGGQHVNKTDSAIRITHIPT 253
Query: 89 GVIAQAAEDRSQHKNRALALSRLPTFL 115
GV+ + ++RSQHKNRA A+S L T L
Sbjct: 254 GVVVECQDERSQHKNRAKAMSLLKTRL 280
>sp|A6Q582|RF2_NITSB Peptide chain release factor 2 OS=Nitratiruptor sp. (strain
SB155-2) GN=prfB PE=3 SV=1
Length = 368
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 57 RECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
++ + TY++SG GGQH NK ++A+R+ H+PTG++ Q DRSQHKNRA A+ L + L
Sbjct: 236 KDIRVDTYRASGAGGQHVNKTDSAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRL 294
>sp|Q12F86|RF1_POLSJ Peptide chain release factor 1 OS=Polaromonas sp. (strain JS666 /
ATCC BAA-500) GN=prfA PE=3 SV=1
Length = 373
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 46/64 (71%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLAL 117
+ + TY++SG GGQH NK ++AVR+ H+PTG++A+ +DRSQH+N+A AL L +
Sbjct: 231 DLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVAECQDDRSQHRNKAKALQVLSARIVE 290
Query: 118 KVRS 121
K RS
Sbjct: 291 KDRS 294
>sp|A1W163|RF2_CAMJJ Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:23/36 (strain 81-176) GN=prfB PE=3
SV=1
Length = 365
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 64 YKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALAL----SRLPTFLALKV 119
Y++SG GGQH NK E+AVR+ H PTG++ Q DRSQHKN+A A SRL +K
Sbjct: 243 YRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQ 302
Query: 120 RSSVNLGAYSP 130
+ S N G S
Sbjct: 303 QDSANTGEKSE 313
>sp|Q89AC4|RF2_BUCBP Peptide chain release factor 2 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=prfB PE=3 SV=2
Length = 366
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 57 RECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
R+ ++ Y++SG GGQH NK E+AVR++H+PTG++ Q DRSQHKN+ A+ +L L
Sbjct: 238 RDLKIDVYRASGAGGQHVNKTESAVRIRHLPTGIVVQCQNDRSQHKNKDQAMKQLKAKL 296
>sp|Q5HSX6|RF2_CAMJR Peptide chain release factor 2 OS=Campylobacter jejuni (strain
RM1221) GN=prfB PE=3 SV=1
Length = 365
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 64 YKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALAL----SRLPTFLALKV 119
Y++SG GGQH NK E+AVR+ H PTG++ Q DRSQHKN+A A SRL +K
Sbjct: 243 YRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQ 302
Query: 120 RSSVNLGAYSP 130
+ S N G S
Sbjct: 303 QDSANTGEKSE 313
>sp|Q9PMK5|RF2_CAMJE Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=prfB PE=3
SV=1
Length = 365
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 64 YKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALAL----SRLPTFLALKV 119
Y++SG GGQH NK E+AVR+ H PTG++ Q DRSQHKN+A A SRL +K
Sbjct: 243 YRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQ 302
Query: 120 RSSVNLGAYSP 130
+ S N G S
Sbjct: 303 QDSANTGEKSE 313
>sp|A8FNC2|RF2_CAMJ8 Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=prfB
PE=3 SV=1
Length = 365
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 64 YKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALAL----SRLPTFLALKV 119
Y++SG GGQH NK E+AVR+ H PTG++ Q DRSQHKN+A A SRL +K
Sbjct: 243 YRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQ 302
Query: 120 RSSVNLGAYSP 130
+ S N G S
Sbjct: 303 QDSANAGEKSE 313
>sp|C5CXW3|RF1_VARPS Peptide chain release factor 1 OS=Variovorax paradoxus (strain
S110) GN=prfA PE=3 SV=1
Length = 362
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 45/62 (72%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVR 120
+ TY++SG GGQH NK ++AVR+ H+PTG++A+ +DRSQH+N+A AL L + K R
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGIVAECQDDRSQHRNKAKALQVLSARIQEKDR 283
Query: 121 SS 122
S
Sbjct: 284 SE 285
>sp|A6W1C2|RF1_MARMS Peptide chain release factor 1 OS=Marinomonas sp. (strain MWYL1)
GN=prfA PE=3 SV=1
Length = 362
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 48 LELTDDELLRECEMH--TYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRA 105
++ DD ++ + ++ T+++SG GGQH NK ++A+RL H+PTGV+ + E+RSQHKNRA
Sbjct: 211 MDEVDDIIINKSDLRIDTFRASGAGGQHVNKTDSAIRLTHIPTGVVVECQEERSQHKNRA 270
Query: 106 LALSRLPTFL 115
A+S L + L
Sbjct: 271 KAMSLLASRL 280
>sp|Q7MAP4|RF2_WOLSU Peptide chain release factor 2 OS=Wolinella succinogenes (strain
ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC
602W) GN=prfB PE=3 SV=1
Length = 368
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 57 RECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
++ + TY++SG GGQH NK E+A+R+ H+PTG++ Q DRSQHKN+A A L + L
Sbjct: 236 KDLRLDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNKATAFKMLKSRL 294
>sp|Q7VIE6|RF2_HELHP Peptide chain release factor 2 OS=Helicobacter hepaticus (strain
ATCC 51449 / 3B1) GN=prfB PE=3 SV=1
Length = 366
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 5/69 (7%)
Query: 52 DDELLRECE-----MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRAL 106
DD++ E E + TY++SG GGQH NK E+A+R+ H PTG++ Q DRSQHKN+A
Sbjct: 226 DDDINIEIEDKDIRIDTYRASGAGGQHVNKTESAIRITHFPTGIVVQCQNDRSQHKNKAT 285
Query: 107 ALSRLPTFL 115
A+ L + L
Sbjct: 286 AMKMLKSKL 294
>sp|A8EWG5|RF2_ARCB4 Peptide chain release factor 2 OS=Arcobacter butzleri (strain
RM4018) GN=prfB PE=3 SV=1
Length = 365
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 57 RECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALAL----SRLP 112
++ + TY++SG GGQH NK E+A+R+ H+PTG++ Q DRSQHKN+ A SRL
Sbjct: 236 KDIRIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNKDSAFKMLKSRLY 295
Query: 113 TFLALKVRSS 122
+ K R+S
Sbjct: 296 EYELEKQRAS 305
>sp|B3PJP4|RF1_CELJU Peptide chain release factor 1 OS=Cellvibrio japonicus (strain
Ueda107) GN=prfA PE=3 SV=1
Length = 360
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 43/55 (78%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ TY++SG GGQH NK ++A+R+ H+PTG++ + ++RSQHKNRA A+S L T L
Sbjct: 226 IDTYRASGAGGQHVNKTDSAIRITHIPTGIVVECQDERSQHKNRARAMSLLATKL 280
>sp|B2U8V1|RF2_RALPJ Peptide chain release factor 2 OS=Ralstonia pickettii (strain 12J)
GN=prfB PE=3 SV=1
Length = 367
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ TY++SG GGQH NK ++AVR+ H+PTG++ Q DRSQH+NRA A++ L + L
Sbjct: 243 VDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNRAEAMTMLKSRL 297
>sp|A5WFG1|RF1_PSYWF Peptide chain release factor 1 OS=Psychrobacter sp. (strain PRwf-1)
GN=prfA PE=3 SV=1
Length = 364
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRL-PTFLA 116
+ M T++SSG GGQH N ++AVRL H+PTGV+A+ ++RSQHKNRA A+ L
Sbjct: 224 DIRMDTFRSSGAGGQHVNTTDSAVRLTHIPTGVVAECQQERSQHKNRAKAMQMLIARIQQ 283
Query: 117 LKVRSSVN 124
KV+ V+
Sbjct: 284 AKVQEQVD 291
>sp|Q21FM3|RF1_SACD2 Peptide chain release factor 1 OS=Saccharophagus degradans (strain
2-40 / ATCC 43961 / DSM 17024) GN=prfA PE=3 SV=1
Length = 360
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 45/57 (78%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLAL 117
+ T+++SG GGQH NK ++A+RL H+PTGV+ + ++RSQHKNRA A+S L + L++
Sbjct: 226 IDTFRASGAGGQHVNKTDSAIRLTHIPTGVVVECQDERSQHKNRAKAMSLLASRLSM 282
>sp|A4VPB9|RF1_PSEU5 Peptide chain release factor 1 OS=Pseudomonas stutzeri (strain
A1501) GN=prfA PE=3 SV=1
Length = 360
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 4/71 (5%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLAL 117
E + TY+SSG GGQH NK ++A+R+ H+PTG++ + E+RSQHKNRA A++ +LA
Sbjct: 223 ELRIDTYRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAMA----WLAA 278
Query: 118 KVRSSVNLGAY 128
K++ + A+
Sbjct: 279 KLQDRQDAAAH 289
>sp|A1U367|RF1_MARAV Peptide chain release factor 1 OS=Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8) GN=prfA PE=3 SV=1
Length = 363
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 9/87 (10%)
Query: 34 FHHCSC-----PASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPT 88
H +C P + + +E+ +L + T++SSG GGQH NK ++A+R+ H+PT
Sbjct: 198 IHTSACTVAVMPEADEAEAVEINKADL----RVDTFRSSGAGGQHVNKTDSAIRITHLPT 253
Query: 89 GVIAQAAEDRSQHKNRALALSRLPTFL 115
G++ + E+RSQHKNRA ALS L + L
Sbjct: 254 GIVVECQEERSQHKNRAKALSLLASRL 280
>sp|C1DEV0|RF1_AZOVD Peptide chain release factor 1 OS=Azotobacter vinelandii (strain DJ
/ ATCC BAA-1303) GN=prfA PE=3 SV=1
Length = 360
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 4/71 (5%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLAL 117
E + TY+SSG GGQH NK ++A+R+ H+PTG++ + E+RSQHKNRA A++ +LA
Sbjct: 223 ELRVDTYRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAMA----WLAA 278
Query: 118 KVRSSVNLGAY 128
K++ + A+
Sbjct: 279 KLQDRQDAAAH 289
>sp|B4EDB1|RF2_BURCJ Peptide chain release factor 2 OS=Burkholderia cepacia (strain
J2315 / LMG 16656) GN=prfB PE=3 SV=1
Length = 367
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ TY++SG GGQH NK ++AVR+ H+PTG++ Q DRSQH+NRA A++ L + L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|Q63SP0|RF2_BURPS Peptide chain release factor 2 OS=Burkholderia pseudomallei (strain
K96243) GN=prfB PE=3 SV=1
Length = 367
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ TY++SG GGQH NK ++AVR+ H+PTG++ Q DRSQH+NRA A++ L + L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|A3NX26|RF2_BURP0 Peptide chain release factor 2 OS=Burkholderia pseudomallei (strain
1106a) GN=prfB PE=3 SV=3
Length = 367
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ TY++SG GGQH NK ++AVR+ H+PTG++ Q DRSQH+NRA A++ L + L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|Q62J00|RF2_BURMA Peptide chain release factor 2 OS=Burkholderia mallei (strain ATCC
23344) GN=prfB PE=3 SV=1
Length = 367
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ TY++SG GGQH NK ++AVR+ H+PTG++ Q DRSQH+NRA A++ L + L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|P55999|RF2_HELPY Peptide chain release factor 2 OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=prfB PE=3 SV=1
Length = 363
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%)
Query: 64 YKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
Y+SSG GGQH NK E+AVR+ H PTG++ Q DRSQHKN+A AL L + L
Sbjct: 243 YRSSGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|Q4K695|RF1_PSEF5 Peptide chain release factor 1 OS=Pseudomonas fluorescens (strain
Pf-5 / ATCC BAA-477) GN=prfA PE=3 SV=1
Length = 360
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ TY+SSG GGQH NK ++A+R+ H+P+G++ + E+RSQHKNRA A+S L L
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPSGIVVECQEERSQHKNRARAMSWLSAKL 280
>sp|Q5NZU2|RF2_AROAE Peptide chain release factor 2 OS=Aromatoleum aromaticum (strain
EbN1) GN=prfB PE=3 SV=1
Length = 367
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 40/55 (72%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ TY++SG GGQH NK ++AVR+ H PTGV+ Q DRSQHKN+A A+S L L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHEPTGVVVQCQNDRSQHKNKAEAMSMLKARL 297
>sp|A7H5G4|RF2_CAMJD Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=prfB
PE=3 SV=1
Length = 365
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 64 YKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALAL----SRLPTFLALKV 119
Y++SG GGQH NK E+AVR+ H PTG++ Q DRSQHKN+A A SRL +K
Sbjct: 243 YRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQ 302
Query: 120 RSSVN 124
+ S N
Sbjct: 303 QDSAN 307
>sp|B2SFF6|RF1_FRATM Peptide chain release factor 1 OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=prfA PE=3 SV=1
Length = 361
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ ++ T+++SG GGQH NK ++A+R+ H+PTGV+ + + RSQHKNRA A+S L + L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q5QUZ8|RF1_IDILO Peptide chain release factor 1 OS=Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR) GN=prfA PE=3 SV=1
Length = 364
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 41/51 (80%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRL 111
+ TY++SG GGQH N+ ++A+RL H+PTGV+ + E+RSQHKNRA A+S L
Sbjct: 227 VDTYRASGAGGQHVNRTDSAIRLTHIPTGVVVECQEERSQHKNRAKAMSVL 277
>sp|B0TX37|RF1_FRAP2 Peptide chain release factor 1 OS=Francisella philomiragia subsp.
philomiragia (strain ATCC 25017) GN=prfA PE=3 SV=1
Length = 361
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ ++ T+++SG GGQH NK ++A+R+ H+PTGV+ + + RSQHKNRA A+S L + L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q6F9S2|RF1_ACIAD Peptide chain release factor 1 OS=Acinetobacter sp. (strain ADP1)
GN=prfA PE=3 SV=2
Length = 362
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 46/62 (74%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVR 120
+ TY++SG GGQH NK ++AVR+ HVPTGV+ + E+RSQHKN+A A++ L + L R
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHVPTGVVVECQEERSQHKNKAKAMALLVSRLENAKR 283
Query: 121 SS 122
++
Sbjct: 284 AA 285
>sp|A4IWC1|RF1_FRATW Peptide chain release factor 1 OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=prfA PE=3 SV=1
Length = 361
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ ++ T+++SG GGQH NK ++A+R+ H+PTGV+ + + RSQHKNRA A+S L + L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q0BKE8|RF1_FRATO Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=prfA PE=3 SV=1
Length = 361
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ ++ T+++SG GGQH NK ++A+R+ H+PTGV+ + + RSQHKNRA A+S L + L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q2A1Q0|RF1_FRATH Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=prfA PE=3 SV=1
Length = 361
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ ++ T+++SG GGQH NK ++A+R+ H+PTGV+ + + RSQHKNRA A+S L + L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|A7NE96|RF1_FRATF Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=prfA PE=3 SV=1
Length = 361
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ ++ T+++SG GGQH NK ++A+R+ H+PTGV+ + + RSQHKNRA A+S L + L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q5NIA8|RF1_FRATT Peptide chain release factor 1 OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=prfA PE=3 SV=1
Length = 361
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ ++ T+++SG GGQH NK ++A+R+ H+PTGV+ + + RSQHKNRA A+S L + L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q14JR1|RF1_FRAT1 Peptide chain release factor 1 OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=prfA PE=3 SV=1
Length = 361
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ ++ T+++SG GGQH NK ++A+R+ H+PTGV+ + + RSQHKNRA A+S L + L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|B0UUE6|RF1_HAES2 Peptide chain release factor 1 OS=Haemophilus somnus (strain 2336)
GN=prfA PE=3 SV=1
Length = 360
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLA 116
+ TY+SSG GGQH N ++AVR+ H+PTG++ + ++RSQHKN+A ALS L + +A
Sbjct: 224 IDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALSVLASRIA 279
>sp|Q47Y94|RF1_COLP3 Peptide chain release factor 1 OS=Colwellia psychrerythraea (strain
34H / ATCC BAA-681) GN=prfA PE=3 SV=1
Length = 362
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 43/58 (74%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFL 115
+ ++ T+++SG GGQH NK ++A+R+ H+PTGV+ + E RSQHKNRA A+S L L
Sbjct: 223 DLKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQEQRSQHKNRAQAMSVLQARL 280
>sp|Q0I3B5|RF1_HAES1 Peptide chain release factor 1 OS=Haemophilus somnus (strain 129Pt)
GN=prfA PE=3 SV=1
Length = 360
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLA 116
+ TY+SSG GGQH N ++AVR+ H+PTG++ + ++RSQHKN+A ALS L + +A
Sbjct: 224 IDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALSVLASRIA 279
>sp|A6Q718|RF2_SULNB Peptide chain release factor 2 OS=Sulfurovum sp. (strain NBC37-1)
GN=prfB PE=3 SV=1
Length = 364
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 57 RECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALAL----SRLP 112
++ + TY++SG GGQH NK E+A+R+ H PTG++ Q DRSQHKN++ A+ SRL
Sbjct: 236 KDLRIDTYRASGAGGQHVNKTESAIRITHEPTGIVVQCQNDRSQHKNKSAAMKMLKSRLY 295
Query: 113 TFLALKVRSSVN 124
+ K ++ ++
Sbjct: 296 EYEMAKKQAEID 307
>sp|C5BSZ6|RF1_TERTT Peptide chain release factor 1 OS=Teredinibacter turnerae (strain
ATCC 39867 / T7901) GN=prfA PE=3 SV=1
Length = 360
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 23/122 (18%)
Query: 34 FHHCSC-----PASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPT 88
H +C P + + +EL +L + T+++SG GGQH NK ++A+R+ H+PT
Sbjct: 198 IHTSACTVAIMPEADESEEVELNKGDL----RIDTFRASGAGGQHVNKTDSAIRITHIPT 253
Query: 89 GVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSE 148
G++ + ++RSQHKNRA A+S LA ++ S+ Q Q +++ R S
Sbjct: 254 GIVVECQDERSQHKNRAKAMS----LLAARINSA----------QAEQFAAEQASERKSL 299
Query: 149 VG 150
VG
Sbjct: 300 VG 301
>sp|A6SUF6|RF1_JANMA Peptide chain release factor 1 OS=Janthinobacterium sp. (strain
Marseille) GN=prfA PE=3 SV=1
Length = 360
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 41/54 (75%)
Query: 58 ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRL 111
+ + TY++SG GGQH NK ++AVR+ H+PTG++ + +DRSQHKN+A AL L
Sbjct: 221 DLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVECQDDRSQHKNKASALKVL 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,154,667
Number of Sequences: 539616
Number of extensions: 2753237
Number of successful extensions: 6406
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5378
Number of HSP's gapped (non-prelim): 993
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)