Query 036979
Match_columns 212
No_of_seqs 234 out of 1088
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 12:07:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zbt_A RF-1, peptide chain rel 100.0 9.1E-48 3.1E-52 353.1 8.8 165 3-186 178-349 (371)
2 1rq0_A RF-1, peptide chain rel 100.0 1.2E-47 4E-52 349.4 9.2 165 3-186 141-312 (342)
3 2b3t_B RF-1, peptide chain rel 100.0 1.7E-47 5.8E-52 350.3 6.5 165 3-186 164-336 (360)
4 3d5a_X RF1, peptide chain rele 100.0 8.8E-48 3E-52 351.5 3.9 165 3-186 160-331 (354)
5 1gqe_A Release factor 2, RF2; 100.0 3.1E-45 1.1E-49 335.9 11.2 172 3-196 181-360 (365)
6 2ihr_1 Peptide chain release f 100.0 7.3E-45 2.5E-49 333.4 10.7 171 3-197 169-349 (365)
7 2rsm_A Probable peptide chain 100.0 4.1E-36 1.4E-40 237.3 10.3 99 20-122 10-111 (115)
8 2jva_A Peptidyl-tRNA hydrolase 99.9 6.5E-27 2.2E-31 183.0 9.4 72 46-121 6-101 (108)
9 1j26_A Immature colon carcinom 99.9 1.9E-26 6.3E-31 181.4 9.0 71 46-120 13-108 (112)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 4.8E-25 1.6E-29 179.2 6.1 73 46-122 6-102 (140)
11 3oou_A LIN2118 protein; protei 68.6 2.9 9.8E-05 30.1 2.4 45 167-211 26-72 (108)
12 2k9s_A Arabinose operon regula 65.4 4.9 0.00017 28.8 3.1 45 167-211 25-71 (107)
13 3oio_A Transcriptional regulat 61.9 6.1 0.00021 28.5 3.1 45 167-211 28-74 (113)
14 1bl0_A Protein (multiple antib 56.1 8.3 0.00028 28.6 3.1 45 167-211 32-78 (129)
15 3plv_C 66 kDa U4/U6.U5 small n 55.4 4.9 0.00017 22.7 1.2 15 191-205 5-19 (21)
16 3lsg_A Two-component response 54.1 10 0.00034 26.8 3.1 45 167-211 24-70 (103)
17 4h0a_A Uncharacterized protein 53.7 5.7 0.0002 35.2 2.1 20 187-206 207-226 (323)
18 1uxc_A FRUR (1-57), fructose r 52.9 22 0.00075 24.1 4.6 22 166-187 4-25 (65)
19 1r8u_A CBP/P300-interacting tr 52.8 5.7 0.0002 26.7 1.5 22 7-28 5-26 (50)
20 3mn2_A Probable ARAC family tr 52.2 11 0.00039 26.7 3.2 43 167-209 23-67 (108)
21 3mkl_A HTH-type transcriptiona 46.1 18 0.00061 26.3 3.5 45 167-211 28-73 (120)
22 4ifa_A Extracellular protein c 43.8 10 0.00036 34.0 2.2 22 186-207 221-242 (339)
23 1p4q_A CBP/P300-interacting tr 43.4 8.7 0.0003 26.0 1.2 25 4-28 14-38 (52)
24 2l8n_A Transcriptional repress 31.1 60 0.0021 22.0 4.0 22 166-187 13-34 (67)
25 3kjx_A Transcriptional regulat 30.8 51 0.0018 27.3 4.3 39 166-204 14-56 (344)
26 2rrf_A Zinc finger FYVE domain 27.0 1.6E+02 0.0055 23.6 6.3 85 27-115 29-129 (141)
27 3gbg_A TCP pilus virulence reg 25.5 50 0.0017 26.7 3.3 42 170-211 193-235 (276)
28 1vig_A Vigilin; RNA-binding pr 24.7 27 0.00093 23.7 1.3 43 67-114 20-69 (71)
29 2ctl_A Vigilin; K homology typ 24.6 64 0.0022 23.3 3.4 49 67-118 32-88 (97)
30 4fe7_A Xylose operon regulator 24.5 38 0.0013 29.3 2.4 42 170-211 329-372 (412)
31 1d5y_A ROB transcription facto 24.0 30 0.001 28.3 1.6 43 168-210 25-69 (292)
32 2cte_A Vigilin; K homology typ 23.3 29 0.001 24.9 1.3 46 68-118 33-85 (94)
33 2ctm_A Vigilin; K homology typ 22.1 62 0.0021 23.3 2.9 50 68-120 33-88 (95)
34 2ctf_A Vigilin; K homology typ 22.0 84 0.0029 23.0 3.6 47 68-118 43-93 (102)
35 2ftc_B Mitochondrial ribosomal 21.6 53 0.0018 26.0 2.5 28 61-89 79-106 (136)
36 2ctk_A Vigilin; K homology typ 21.3 68 0.0023 23.5 3.0 63 47-122 20-89 (104)
37 1zoq_C CREB-binding protein, i 21.1 60 0.0021 21.5 2.3 24 177-200 20-43 (47)
38 2glo_A Brinker CG9653-PA; prot 20.5 79 0.0027 20.1 2.9 27 167-193 30-56 (59)
No 1
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=9.1e-48 Score=353.15 Aligned_cols=165 Identities=24% Similarity=0.283 Sum_probs=131.8
Q ss_pred ceeechhhhHhhhhhccccceeecCCccccceeEee-----eCCCCCCCccccChhhhhccceEEEEeeCCCCCCCCCcc
Q 036979 3 REFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCS-----CPASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKC 77 (212)
Q Consensus 3 ~~~~g~~~~~~l~~e~Gvhrvqrvp~~~~~~~~~~s-----~~~~~~~~~i~i~~~~L~~~~~i~~~RsSGPGGQ~VNKt 77 (212)
+.|+|.++|++|++|+|||||||||+++..|+.|+| |+|..+...+.|+++|| +|+|+|||||||||||||
T Consensus 178 ~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~ev~i~I~~~dl----~i~~~RssGpGGQ~VNkt 253 (371)
T 1zbt_A 178 AMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDL----RVDIYHASGAGGQNVNKV 253 (371)
T ss_dssp EEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEECCCGGGSCCCGGGE----EEEEECC---------CC
T ss_pred EEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEEEeccccccccccCcCcE----EEEEecCCCCCCCccccc
Confidence 579999999999999999999999999976666554 56655556678888877 999999999999999999
Q ss_pred CceEEEEEecCCcEEEEcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhcCCCCCcccCCCCCCCcCCCC
Q 036979 78 ETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVGPQIGPNN 157 (212)
Q Consensus 78 ~saVrl~HlPtGIvv~~~e~RSq~~Nk~~Al~~L~~~l~~~~~e~~~~~~~s~~~e~~q~~~rKsqir~~drs~qIRtYN 157 (212)
+|||+|+|+||||+|+||++|||++||+.||++|+++|.....++.+.+ ....+++++++|+||++|||||
T Consensus 254 ~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~---------~~~~r~~~ig~g~Rse~IRtYn 324 (371)
T 1zbt_A 254 ATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDE---------QDAERKSTVGTGDRSERIRTYN 324 (371)
T ss_dssp CCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TCC----CCSCSCTTSEEEEEE
T ss_pred ceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhhccccccCCCeeeEE
Confidence 9999999999999999999999999999999999998887766554321 1345789999999999999999
Q ss_pred cchHHHHHHHHHH--HhcCChhHHHHHhhcC
Q 036979 158 PKFALVLLYSLLL--RLLLSTGALSRLILSD 186 (212)
Q Consensus 158 ~~fp~~~~ldl~~--~lg~sts~l~k~l~~~ 186 (212)
|. | +.|+ |+|+++++|..||.+|
T Consensus 325 f~-q-----~rVtDhRtg~~~~~l~~VldGd 349 (371)
T 1zbt_A 325 FP-Q-----NRVTDHRIGLTLQKLDSILSGK 349 (371)
T ss_dssp TT-T-----TEEEETTTTEEESCHHHHHTTC
T ss_pred CC-C-----CEeeecccCCeECChHHHhCCc
Confidence 84 3 5675 9999999999999997
No 2
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=1.2e-47 Score=349.40 Aligned_cols=165 Identities=25% Similarity=0.308 Sum_probs=131.3
Q ss_pred ceeechhhhHhhhhhccccceeecCCccccceeEee-----eCCCCCCCccccChhhhhccceEEEEeeCCCCCCCCCcc
Q 036979 3 REFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCS-----CPASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKC 77 (212)
Q Consensus 3 ~~~~g~~~~~~l~~e~Gvhrvqrvp~~~~~~~~~~s-----~~~~~~~~~i~i~~~~L~~~~~i~~~RsSGPGGQ~VNKt 77 (212)
+.|+|.++|++|++|+|||||||||+++..|+.|+| |+|..+...+.|+++|| +|+|+|||||||||||||
T Consensus 141 ~~I~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~~i~i~~~dl----~i~~~RssGpGGQ~VNKt 216 (342)
T 1rq0_A 141 FFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDL----KIETFRASGHGGQYVNKT 216 (342)
T ss_dssp EEEESTTHHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCGGGSCCCGGGE----EEEEECCCC----CCSSS
T ss_pred EEEECcCHHHHHhhccCeEEEEecCCcccCCCCcccceEEEEeccccccccccChhHe----EEEeecCCCCCCcccccc
Confidence 679999999999999999999999999976666554 56655555678888877 999999999999999999
Q ss_pred CceEEEEEecCCcEEEEcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhcCCCCCcccCCCCCCCcCCCC
Q 036979 78 ETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVGPQIGPNN 157 (212)
Q Consensus 78 ~saVrl~HlPtGIvv~~~e~RSq~~Nk~~Al~~L~~~l~~~~~e~~~~~~~s~~~e~~q~~~rKsqir~~drs~qIRtYN 157 (212)
+|||+|+|+||||+|+||++|||++||+.||++|+++|.....++...+. ...+++++++|+||++|||||
T Consensus 217 ~SaVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~---------~~~r~~~i~~g~Rse~IRtYn 287 (342)
T 1rq0_A 217 ESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREI---------SQKRKSQIGTGERSEKIRTYN 287 (342)
T ss_dssp SEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT---------CC----------CCCEEEEEE
T ss_pred cceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhcccccccCCeEEEE
Confidence 99999999999999999999999999999999999988887666644321 245789999999999999999
Q ss_pred cchHHHHHHHHHH--HhcCChhHHHHHhhcC
Q 036979 158 PKFALVLLYSLLL--RLLLSTGALSRLILSD 186 (212)
Q Consensus 158 ~~fp~~~~ldl~~--~lg~sts~l~k~l~~~ 186 (212)
|. | +.|+ |+|+++++|..||.+|
T Consensus 288 f~-~-----~rVtDhRt~~~~~~l~~vldGd 312 (342)
T 1rq0_A 288 FP-Q-----NRVTDHRINYTSYRLQEILDGD 312 (342)
T ss_dssp TT-T-----TEEEETTTTEEESCHHHHHTTC
T ss_pred CC-C-----CeeeecccCceeCCHHHHhCCc
Confidence 74 3 5575 9999999999999997
No 3
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=1.7e-47 Score=350.30 Aligned_cols=165 Identities=22% Similarity=0.308 Sum_probs=134.3
Q ss_pred ceeechhhhHhhhhhccccceeecCCccccceeEee-----eCCCCCCCc-cccChhhhhccceEEEEeeCCCCCCCCCc
Q 036979 3 REFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCS-----CPASKKKNY-LELTDDELLRECEMHTYKSSGPGGQHRNK 76 (212)
Q Consensus 3 ~~~~g~~~~~~l~~e~Gvhrvqrvp~~~~~~~~~~s-----~~~~~~~~~-i~i~~~~L~~~~~i~~~RsSGPGGQ~VNK 76 (212)
+.|+|.++|++|++|+|||||||||+++..|+.|+| |+|..+... +.|+++|| +|+|+||||||||||||
T Consensus 164 ~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~e~i~i~~~dl----~i~~~RssG~GGQ~VNk 239 (360)
T 2b3t_B 164 AKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADL----RIDTFRSSGAGGQHVNT 239 (360)
T ss_dssp EEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSE----EEEECCSSCCCTTTCCC
T ss_pred EEEEcccHHHHHHhccCeEEEEecCCCcccCcCCccceEEEEecCcccccccccChhhe----EEeeecCCCCCCCcccc
Confidence 579999999999999999999999999976666664 455555444 67887777 99999999999999999
Q ss_pred cCceEEEEEecCCcEEEEcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhcCCCCCcccCCCCCCCcCCC
Q 036979 77 CETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVGPQIGPN 156 (212)
Q Consensus 77 t~saVrl~HlPtGIvv~~~e~RSq~~Nk~~Al~~L~~~l~~~~~e~~~~~~~s~~~e~~q~~~rKsqir~~drs~qIRtY 156 (212)
|+|||+|+|+||||+|+||++|||++||+.|+++|+++|.....++.+.+ ....+++++++|+||++||||
T Consensus 240 t~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~---------~~~~r~~~i~~g~rse~IRtY 310 (360)
T 2b3t_B 240 TDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQA---------EASTRRNLLGSGDRSDRNRTY 310 (360)
T ss_dssp SSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC---------------CCC-------CCEEEEE
T ss_pred ccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhcccccccCCeeeE
Confidence 99999999999999999999999999999999999999988766654331 134578999999999999999
Q ss_pred CcchHHHHHHHHHH--HhcCChhHHHHHhhcC
Q 036979 157 NPKFALVLLYSLLL--RLLLSTGALSRLILSD 186 (212)
Q Consensus 157 N~~fp~~~~ldl~~--~lg~sts~l~k~l~~~ 186 (212)
||. | +.|+ |+|+++++|..||.+|
T Consensus 311 nf~-~-----~rVtDhRt~~~~~~l~~vldG~ 336 (360)
T 2b3t_B 311 NFP-Q-----GRVTDHRINLTLYRLDEVMEGK 336 (360)
T ss_dssp ETT-T-----TEEEEGGGTEEESCHHHHHHTC
T ss_pred ECC-C-----CeeeecccCcEECCHHHHhCCC
Confidence 974 3 5675 9999999999999997
No 4
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=8.8e-48 Score=351.54 Aligned_cols=165 Identities=25% Similarity=0.296 Sum_probs=143.3
Q ss_pred ceeechhhhHhhhhhccccceeecCCccccceeEee-----eCCCCCCCccccChhhhhccceEEEEeeCCCCCCCCCcc
Q 036979 3 REFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCS-----CPASKKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKC 77 (212)
Q Consensus 3 ~~~~g~~~~~~l~~e~Gvhrvqrvp~~~~~~~~~~s-----~~~~~~~~~i~i~~~~L~~~~~i~~~RsSGPGGQ~VNKt 77 (212)
+.|+|.++|++|++|+|||||||||+++..|+.|+| |+|..+...+.|+++|| +|+|+|||||||||||||
T Consensus 160 ~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~~~i~i~~~dl----~i~~~RssG~GGQ~VNkt 235 (354)
T 3d5a_X 160 FEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEI----RIDVMRASGPGGQGVNTT 235 (354)
T ss_dssp EEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGE----EEEEECCCSCCHHHHHHC
T ss_pred EEEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcccccccCccce----EEEeecCCCCCCcccccc
Confidence 579999999999999999999999999976665554 56655556678888887 999999999999999999
Q ss_pred CceEEEEEecCCcEEEEcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhcCCCCCcccCCCCCCCcCCCC
Q 036979 78 ETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVGPQIGPNN 157 (212)
Q Consensus 78 ~saVrl~HlPtGIvv~~~e~RSq~~Nk~~Al~~L~~~l~~~~~e~~~~~~~s~~~e~~q~~~rKsqir~~drs~qIRtYN 157 (212)
+|||||+|+||||+|+||++|||++||+.||++|+++|.....++.+.+ . ...+++++++|+||++|||||
T Consensus 236 ~SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~-------~--~~~r~~~i~~g~rse~IRtYn 306 (354)
T 3d5a_X 236 DSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAER-------L--RKTRLAQIGTGERSEKIRTYN 306 (354)
T ss_dssp CCEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--HHHHHHHSCGGGGSCSSEEEE
T ss_pred cceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--HHHHHhhcccccccCCeeeEE
Confidence 9999999999999999999999999999999999998887766554321 1 234689999999999999999
Q ss_pred cchHHHHHHHHHH--HhcCChhHHHHHhhcC
Q 036979 158 PKFALVLLYSLLL--RLLLSTGALSRLILSD 186 (212)
Q Consensus 158 ~~fp~~~~ldl~~--~lg~sts~l~k~l~~~ 186 (212)
|. | +.|+ |+|+++++|..||.+|
T Consensus 307 f~-q-----~rVtDhR~~~~~~~l~~vldG~ 331 (354)
T 3d5a_X 307 FP-Q-----SRVTDHRIGFTTHDLEGVLSGH 331 (354)
T ss_dssp TT-T-----TEEEETTTTEEECCHHHHTTTC
T ss_pred CC-C-----CeeeecccCceeCChHHhhCCc
Confidence 74 3 5675 9999999999999997
No 5
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=3.1e-45 Score=335.89 Aligned_cols=172 Identities=24% Similarity=0.291 Sum_probs=139.5
Q ss_pred ceeechhhhHhhhhhccccceeecCCccccceeEee-----eCCCCC-CCccccChhhhhccceEEEEeeCCCCCCCCCc
Q 036979 3 REFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCS-----CPASKK-KNYLELTDDELLRECEMHTYKSSGPGGQHRNK 76 (212)
Q Consensus 3 ~~~~g~~~~~~l~~e~Gvhrvqrvp~~~~~~~~~~s-----~~~~~~-~~~i~i~~~~L~~~~~i~~~RsSGPGGQ~VNK 76 (212)
+.|+|.++|++|++|+|||||||||+++..|+.|+| |+|..+ ...+.|+++|| +|+|+||||||||||||
T Consensus 181 ~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~~v~i~i~~~dl----~~~~~RssG~GGQ~VNk 256 (365)
T 1gqe_A 181 IKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADL----RIDVYRASGAGGQHVNR 256 (365)
T ss_dssp EEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGE----EEEEECCCCSSCCSTTS
T ss_pred EEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCcccccccCHHHc----eEeeecCCCCCCCcccC
Confidence 579999999999999999999999999876666554 455543 45788888887 99999999999999999
Q ss_pred cCceEEEEEecCCcEEEEcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhcCCCCCcccCCCCCCCcCCC
Q 036979 77 CETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPPKSTIRSSEVGPQIGPN 156 (212)
Q Consensus 77 t~saVrl~HlPtGIvv~~~e~RSq~~Nk~~Al~~L~~~l~~~~~e~~~~~~~s~~~e~~q~~~rKsqir~~drs~qIRtY 156 (212)
|+|||||+|+||||+|+||++|||++||+.|+++|+++|.....++.+.+ ....++.+. ...||+|||||
T Consensus 257 t~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~---------~~~~r~~~~-~i~~G~~IRtY 326 (365)
T 1gqe_A 257 TESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAE---------KQAMEDNKS-DIGWGSQIRSY 326 (365)
T ss_dssp SCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TTCCSTTCC-CCCSCSEEEEE
T ss_pred ccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhhc-ccCccCCeEeE
Confidence 99999999999999999999999999999999999998877655554321 123344222 23578899999
Q ss_pred CcchHHHHHHHHHH--HhcCChhHHHHHhhcChhHHHHHHHH
Q 036979 157 NPKFALVLLYSLLL--RLLLSTGALSRLILSDDSLRMAVNEF 196 (212)
Q Consensus 157 N~~fp~~~~ldl~~--~lg~sts~l~k~l~~~~~~~~~vn~~ 196 (212)
||. | +- |+ |+|+++++|..||.+| +=.+++.+
T Consensus 327 ~f~-~----~r-VkDhRt~~~~~~l~~vldGd--ld~~I~a~ 360 (365)
T 1gqe_A 327 VLD-D----SR-IKDLRTGVETRNTQAVLDGS--LDQFIEAS 360 (365)
T ss_dssp EGG-G----TE-EEETTTCCEESCHHHHHTTC--CHHHHHHH
T ss_pred ECC-C----Ce-eeccccCceECCHHHHhCCC--HHHHHHHH
Confidence 975 4 55 65 9999999999999997 43444433
No 6
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=7.3e-45 Score=333.42 Aligned_cols=171 Identities=27% Similarity=0.245 Sum_probs=139.8
Q ss_pred ceeechhhhHhhhhhccccceeecCCccccceeEee-----eCCCCC-CCccccChhhhhccceEEEEeeCCCCCCCCCc
Q 036979 3 REFKNNKIITLLTCWTGLDWADWAGPSIRMGFHHCS-----CPASKK-KNYLELTDDELLRECEMHTYKSSGPGGQHRNK 76 (212)
Q Consensus 3 ~~~~g~~~~~~l~~e~Gvhrvqrvp~~~~~~~~~~s-----~~~~~~-~~~i~i~~~~L~~~~~i~~~RsSGPGGQ~VNK 76 (212)
+.|+|.++|++|++|+|||||||||+++..|+.|+| ++|..+ ...+.|+++|| +|+|+||||||||||||
T Consensus 169 ~~I~G~~ayg~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~V~P~~~~~~~i~i~~~dl----~i~~~RssG~GGQ~VNk 244 (365)
T 2ihr_1 169 ILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEEL----RIDVMRASGPGGQGVNT 244 (365)
T ss_dssp EEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEEECCSSSSCCCCGGGE----EEEEECCCCSSCCSGGG
T ss_pred EEEEccCHHHhhhhCcCEEEEEEeCCCCccCCccceeEEEEEecCCCcccccccCccce----EEEEeecCCCCCceecc
Confidence 579999999999999999999999999876655554 555543 45778888887 99999999999999999
Q ss_pred cCceEEEEEecCCcEEEEcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhcCCC--CCcccCCCCCCCcC
Q 036979 77 CETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRLPTFLALKVRSSVNLGAYSPPLQLLQILPP--KSTIRSSEVGPQIG 154 (212)
Q Consensus 77 t~saVrl~HlPtGIvv~~~e~RSq~~Nk~~Al~~L~~~l~~~~~e~~~~~~~s~~~e~~q~~~r--Ksqir~~drs~qIR 154 (212)
|+|||+|+|+||||+|+||++|||++||+.||++|+++|.....++.+.+ . ...| |+++ .||+|||
T Consensus 245 t~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~-------~--~~~r~~~~~i---~~G~~IR 312 (365)
T 2ihr_1 245 TDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEE-------L--KALRGEVRPI---EWGSQIR 312 (365)
T ss_dssp SCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------T--TTTTCCSCCS---CCCSCSE
T ss_pred cceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--HHHHhhhhcc---CccCCee
Confidence 99999999999999999999999999999999999998877655554321 1 1234 5555 5677999
Q ss_pred CCCcchHHHHHHHHHH--HhcCChhHHHHHhhcChhHHHHHHHHH
Q 036979 155 PNNPKFALVLLYSLLL--RLLLSTGALSRLILSDDSLRMAVNEFR 197 (212)
Q Consensus 155 tYN~~fp~~~~ldl~~--~lg~sts~l~k~l~~~~~~~~~vn~~r 197 (212)
||||. | ++|+ |+|+++++|..||.+| +=.+++.+.
T Consensus 313 tYnf~-~-----~rVtDhRtg~~~~~l~~VldGd--ld~~I~a~l 349 (365)
T 2ihr_1 313 SYVLD-K-----NYVKDHRTGLMRHDPENVLDGD--LMDLIWAGL 349 (365)
T ss_dssp EEEGG-G-----TEEEETTTCCEESCHHHHTTTC--CHHHHHHHH
T ss_pred eEECC-C-----ccchhcccCceeCChHHHhCCc--HHHHHHHHH
Confidence 99976 3 6665 9999999999999997 334444443
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=100.00 E-value=4.1e-36 Score=237.32 Aligned_cols=99 Identities=28% Similarity=0.356 Sum_probs=88.7
Q ss_pred ccceeecCCccccceeEee--eCCC-CCCCccccChhhhhccceEEEEeeCCCCCCCCCccCceEEEEEecCCcEEEEcc
Q 036979 20 LDWADWAGPSIRMGFHHCS--CPAS-KKKNYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAE 96 (212)
Q Consensus 20 vhrvqrvp~~~~~~~~~~s--~~~~-~~~~~i~i~~~~L~~~~~i~~~RsSGPGGQ~VNKt~saVrl~HlPtGIvv~~~e 96 (212)
.|||||||.++.+|++.|+ ++|. .++..+.|+++|| +|+|+|||||||||||||+|||+|+|+||||+|+||+
T Consensus 10 g~rvqrvp~tes~gts~~~v~v~p~~d~~~~l~I~~~dl----~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~ 85 (115)
T 2rsm_A 10 GLRLQEKPALLFPGMAASTVQVAGRKDYPALLPLNESEL----EEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQ 85 (115)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCSCCCCCCSCCCCGGGC----EEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECC
T ss_pred ceeEEecCcccCCccceEEEEeccccCCCccCCcCHHHe----EEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcC
Confidence 5899999999998877765 4443 3455788999888 9999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhh
Q 036979 97 DRSQHKNRALALSRLPTFLALKVRSS 122 (212)
Q Consensus 97 ~RSq~~Nk~~Al~~L~~~l~~~~~e~ 122 (212)
+|||++||+.||++|+++|.+.+..+
T Consensus 86 ~RSQ~~Nr~~A~~~L~~kL~e~~~~~ 111 (115)
T 2rsm_A 86 TRSVDQNRKIARKVLQEKVDVFYNSG 111 (115)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999998876654
No 8
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.94 E-value=6.5e-27 Score=183.01 Aligned_cols=72 Identities=35% Similarity=0.594 Sum_probs=66.8
Q ss_pred CccccChhhhhccceEEEEeeCCCCCCCCCccCceEEEEE------ec-----------------CC-cEEEEcccccHH
Q 036979 46 NYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKH------VP-----------------TG-VIAQAAEDRSQH 101 (212)
Q Consensus 46 ~~i~i~~~~L~~~~~i~~~RsSGPGGQ~VNKt~saVrl~H------lP-----------------tG-Ivv~~~e~RSq~ 101 (212)
+.+.|+++|| +|+|+|||||||||||||+|||+|+| +| || |+|+|+++|||+
T Consensus 6 ~~i~I~~~dl----~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~ 81 (108)
T 2jva_A 6 NNVHLPDAEI----ELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQE 81 (108)
T ss_dssp SSCEECGGGE----EEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHH
T ss_pred cccccChHHE----EEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHH
Confidence 3677888877 99999999999999999999999999 99 89 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 036979 102 KNRALALSRLPTFLALKVRS 121 (212)
Q Consensus 102 ~Nk~~Al~~L~~~l~~~~~e 121 (212)
+||++|+++|+++|..+..-
T Consensus 82 ~Nr~~Al~rL~~~l~~a~~~ 101 (108)
T 2jva_A 82 QNRADALLRLSELIVNAAKL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHccC
Confidence 99999999999999887653
No 9
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.93 E-value=1.9e-26 Score=181.43 Aligned_cols=71 Identities=25% Similarity=0.411 Sum_probs=65.5
Q ss_pred CccccChhhhhccceEEEEeeCCCCCCCCCccCceEEEE-EecCC------------------------cEEEEcccccH
Q 036979 46 NYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLK-HVPTG------------------------VIAQAAEDRSQ 100 (212)
Q Consensus 46 ~~i~i~~~~L~~~~~i~~~RsSGPGGQ~VNKt~saVrl~-HlPtG------------------------Ivv~~~e~RSq 100 (212)
-.+.|+++|| +|+|+|||||||||||||+|||+|+ |+|+| |+|+|+++|||
T Consensus 13 ~~i~I~~~dl----~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ 88 (112)
T 1j26_A 13 ASSYIPLDRL----SISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQ 88 (112)
T ss_dssp SCCCCCTTTS----EEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSH
T ss_pred eEEecChHHe----EEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCH
Confidence 3566887777 9999999999999999999999998 99997 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036979 101 HKNRALALSRLPTFLALKVR 120 (212)
Q Consensus 101 ~~Nk~~Al~~L~~~l~~~~~ 120 (212)
++||++||++|+++|..+..
T Consensus 89 ~~Nr~~Al~rL~~~l~~a~~ 108 (112)
T 1j26_A 89 FRNLAECLQKIRDMIAEASG 108 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999987754
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.91 E-value=4.8e-25 Score=179.18 Aligned_cols=73 Identities=37% Similarity=0.588 Sum_probs=67.0
Q ss_pred CccccChhhhhccceEEEEeeCCCCCCCCCccCceEEEE------EecC-----------------C-cEEEEcccccHH
Q 036979 46 NYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLK------HVPT-----------------G-VIAQAAEDRSQH 101 (212)
Q Consensus 46 ~~i~i~~~~L~~~~~i~~~RsSGPGGQ~VNKt~saVrl~------HlPt-----------------G-Ivv~~~e~RSq~ 101 (212)
+.+.|+++|| +|+|+|||||||||||||+|+|+|+ |+|+ | |+|+|+++|||+
T Consensus 6 ~~i~I~~~el----~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~ 81 (140)
T 4dh9_Y 6 RHVAIPDGEL----EITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQE 81 (140)
T ss_dssp SSSCCCTTCS----EEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHH
T ss_pred CCCccChHHe----EEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHH
Confidence 3678888777 9999999999999999999999999 6997 5 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 036979 102 KNRALALSRLPTFLALKVRSS 122 (212)
Q Consensus 102 ~Nk~~Al~~L~~~l~~~~~e~ 122 (212)
+||++|+++|.++|..+...+
T Consensus 82 ~Nr~~A~~rL~~~l~~a~~~p 102 (140)
T 4dh9_Y 82 LNREAALARLVAMIKELTTEK 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999887654
No 11
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=68.57 E-value=2.9 Score=30.06 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=36.9
Q ss_pred HHHHHhcCChhHHHHHhhcC--hhHHHHHHHHHHhcccccccccCCC
Q 036979 167 SLLLRLLLSTGALSRLILSD--DSLRMAVNEFRTSKCLMAYFNSNLP 211 (212)
Q Consensus 167 dl~~~lg~sts~l~k~l~~~--~~~~~~vn~~r~~~gl~~~~~~~~~ 211 (212)
|+.+.+|+|++.|.++++.. -+....+++.|-++-...|-++++|
T Consensus 26 ~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~s 72 (108)
T 3oou_A 26 TLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVNYAKEELLQTKDN 72 (108)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44479999999999999886 6788889999988888777776654
No 12
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=65.38 E-value=4.9 Score=28.76 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=36.7
Q ss_pred HHHHHhcCChhHHHHHhhc--ChhHHHHHHHHHHhcccccccccCCC
Q 036979 167 SLLLRLLLSTGALSRLILS--DDSLRMAVNEFRTSKCLMAYFNSNLP 211 (212)
Q Consensus 167 dl~~~lg~sts~l~k~l~~--~~~~~~~vn~~r~~~gl~~~~~~~~~ 211 (212)
++.+.+|+|++.|.++++. .-+....+++.|-++-...|-+++++
T Consensus 25 ~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~s 71 (107)
T 2k9s_A 25 SVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMP 71 (107)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3447999999999999987 57888899999988887777766654
No 13
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=61.86 E-value=6.1 Score=28.51 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=36.9
Q ss_pred HHHHHhcCChhHHHHHhhc--ChhHHHHHHHHHHhcccccccccCCC
Q 036979 167 SLLLRLLLSTGALSRLILS--DDSLRMAVNEFRTSKCLMAYFNSNLP 211 (212)
Q Consensus 167 dl~~~lg~sts~l~k~l~~--~~~~~~~vn~~r~~~gl~~~~~~~~~ 211 (212)
++.+.+|+|++.|.++++. .-+....+++.|-++-...|-++++|
T Consensus 28 ~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~~ 74 (113)
T 3oio_A 28 DIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQTSKS 74 (113)
T ss_dssp HHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3447999999999999998 46788899999998888877776654
No 14
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=56.06 E-value=8.3 Score=28.57 Aligned_cols=45 Identities=20% Similarity=0.119 Sum_probs=36.3
Q ss_pred HHHHHhcCChhHHHHHhhc--ChhHHHHHHHHHHhcccccccccCCC
Q 036979 167 SLLLRLLLSTGALSRLILS--DDSLRMAVNEFRTSKCLMAYFNSNLP 211 (212)
Q Consensus 167 dl~~~lg~sts~l~k~l~~--~~~~~~~vn~~r~~~gl~~~~~~~~~ 211 (212)
|+.+.+|+|++.|.++++. .-+....+++.|-++....|-+++++
T Consensus 32 ~lA~~~~~S~~~l~r~fk~~~G~s~~~~l~~~Rl~~A~~lL~~~~~s 78 (129)
T 1bl0_A 32 KVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEP 78 (129)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4557999999999999987 46788889999988887777666553
No 15
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=55.43 E-value=4.9 Score=22.67 Aligned_cols=15 Identities=33% Similarity=0.257 Sum_probs=12.9
Q ss_pred HHHHHHHHhcccccc
Q 036979 191 MAVNEFRTSKCLMAY 205 (212)
Q Consensus 191 ~~vn~~r~~~gl~~~ 205 (212)
..-|.+|.+-||||+
T Consensus 5 EEtnk~r~~lGLkpl 19 (21)
T 3plv_C 5 EETNELRASLGLKLI 19 (26)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHcCCCCC
Confidence 356999999999997
No 16
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=54.06 E-value=10 Score=26.77 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=34.7
Q ss_pred HHHHHhcCChhHHHHHhhcC--hhHHHHHHHHHHhcccccccccCCC
Q 036979 167 SLLLRLLLSTGALSRLILSD--DSLRMAVNEFRTSKCLMAYFNSNLP 211 (212)
Q Consensus 167 dl~~~lg~sts~l~k~l~~~--~~~~~~vn~~r~~~gl~~~~~~~~~ 211 (212)
++.+.+|+|++.|.++++.. -+....+++.|-++-...|-+++++
T Consensus 24 ~lA~~~~~S~~~l~r~fk~~~g~s~~~~~~~~Rl~~A~~lL~~~~~s 70 (103)
T 3lsg_A 24 VLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLTTELK 70 (103)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 44479999999999999874 6778888888888777776665543
No 17
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=53.71 E-value=5.7 Score=35.18 Aligned_cols=20 Identities=35% Similarity=0.189 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHhccccccc
Q 036979 187 DSLRMAVNEFRTSKCLMAYF 206 (212)
Q Consensus 187 ~~~~~~vn~~r~~~gl~~~~ 206 (212)
..++.++|+.|+++||.||-
T Consensus 207 ~~il~liN~~R~~~GL~pL~ 226 (323)
T 4h0a_A 207 ISLYEVTNEMRKLKGLKPLK 226 (323)
T ss_dssp HHHHHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHHHHHcCCcccC
Confidence 35788999999999999985
No 18
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=52.86 E-value=22 Score=24.14 Aligned_cols=22 Identities=14% Similarity=-0.075 Sum_probs=19.5
Q ss_pred HHHHHHhcCChhHHHHHhhcCh
Q 036979 166 YSLLLRLLLSTGALSRLILSDD 187 (212)
Q Consensus 166 ldl~~~lg~sts~l~k~l~~~~ 187 (212)
-|+-+++|+|++.|+++|...+
T Consensus 4 ~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 4 DEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4677899999999999999876
No 19
>1r8u_A CBP/P300-interacting transactivator 2; zinc-binding motifs, protein-protein complex, TAZ zinc finger, transcription/transcription activator complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=52.81 E-value=5.7 Score=26.74 Aligned_cols=22 Identities=18% Similarity=0.174 Sum_probs=19.4
Q ss_pred chhhhHhhhhhccccceeecCC
Q 036979 7 NNKIITLLTCWTGLDWADWAGP 28 (212)
Q Consensus 7 g~~~~~~l~~e~Gvhrvqrvp~ 28 (212)
.+.+..+|.-|.|.||||-.|.
T Consensus 5 DEevLtsLv~ELgLdRv~ELPE 26 (50)
T 1r8u_A 5 DEEVLMSLVIEMGLDRIKELPE 26 (50)
T ss_dssp CHHHHHHHHHHHTGGGCCSCCC
T ss_pred cHHHHHHHHHHHhhHHHHHhHH
Confidence 4678899999999999998884
No 20
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=52.21 E-value=11 Score=26.69 Aligned_cols=43 Identities=9% Similarity=-0.050 Sum_probs=34.8
Q ss_pred HHHHHhcCChhHHHHHhhc--ChhHHHHHHHHHHhcccccccccC
Q 036979 167 SLLLRLLLSTGALSRLILS--DDSLRMAVNEFRTSKCLMAYFNSN 209 (212)
Q Consensus 167 dl~~~lg~sts~l~k~l~~--~~~~~~~vn~~r~~~gl~~~~~~~ 209 (212)
|+.+.+|+|++.|.++++. .-+....+++.|-++-...|-+++
T Consensus 23 ~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~ 67 (108)
T 3mn2_A 23 KLTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGA 67 (108)
T ss_dssp HHHHHHTCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcCC
Confidence 3447999999999999997 567888899999888777776655
No 21
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=46.12 E-value=18 Score=26.28 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=35.4
Q ss_pred HHHHHhcCChhHHHHHhhcC-hhHHHHHHHHHHhcccccccccCCC
Q 036979 167 SLLLRLLLSTGALSRLILSD-DSLRMAVNEFRTSKCLMAYFNSNLP 211 (212)
Q Consensus 167 dl~~~lg~sts~l~k~l~~~-~~~~~~vn~~r~~~gl~~~~~~~~~ 211 (212)
|+.+.+|+|.+.|.++++.. -+....++..|-++-...|-+++++
T Consensus 28 ~lA~~~~~S~~~l~r~fk~~G~s~~~~~~~~Rl~~A~~lL~~~~~s 73 (120)
T 3mkl_A 28 RIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLIVIHGFS 73 (120)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34479999999999999875 3567789999988888777666654
No 22
>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}
Probab=43.82 E-value=10 Score=33.95 Aligned_cols=22 Identities=14% Similarity=-0.075 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHHHhcccccccc
Q 036979 186 DDSLRMAVNEFRTSKCLMAYFN 207 (212)
Q Consensus 186 ~~~~~~~vn~~r~~~gl~~~~~ 207 (212)
...++.++|+.|+++||.||--
T Consensus 221 e~~vl~lvN~~Ra~~Gl~pL~~ 242 (339)
T 4ifa_A 221 MQQIFDLTNIIRSRHNLPLLAW 242 (339)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEE
T ss_pred HHHHHHHHHHHHHHcCCCCCcc
Confidence 4578899999999999999863
No 23
>1p4q_A CBP/P300-interacting transactivator 2; helix, protein-protein complex, transcription/transferase complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=43.43 E-value=8.7 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.8
Q ss_pred eeechhhhHhhhhhccccceeecCC
Q 036979 4 EFKNNKIITLLTCWTGLDWADWAGP 28 (212)
Q Consensus 4 ~~~g~~~~~~l~~e~Gvhrvqrvp~ 28 (212)
++--+.+..+|.-|.|.||||-.|.
T Consensus 14 dliDEevLtsLv~ELGLdRv~ELPE 38 (52)
T 1p4q_A 14 DFIDEEVLMSLVIEMGLDRIKELPE 38 (52)
T ss_dssp SSSCTTHHHHHHHHHTSSSCSSCCC
T ss_pred ccccHHHHHHHHHHHhhHHHHHhHH
Confidence 3345678999999999999998884
No 24
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=31.13 E-value=60 Score=21.99 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.5
Q ss_pred HHHHHHhcCChhHHHHHhhcCh
Q 036979 166 YSLLLRLLLSTGALSRLILSDD 187 (212)
Q Consensus 166 ldl~~~lg~sts~l~k~l~~~~ 187 (212)
-|+-+.+|+|.+.|+++|...+
T Consensus 13 ~diA~~aGVS~sTVSr~ln~~~ 34 (67)
T 2l8n_A 13 KDVALKAKVSTATVSRALMNPD 34 (67)
T ss_dssp HHHHHHTTCCHHHHHHTTTCCC
T ss_pred HHHHHHHCCCHHHHHHHHcCCC
Confidence 6777899999999999998764
No 25
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=30.80 E-value=51 Score=27.34 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=30.3
Q ss_pred HHHHHHhcCChhHHHHHhhcC----hhHHHHHHHHHHhccccc
Q 036979 166 YSLLLRLLLSTGALSRLILSD----DSLRMAVNEFRTSKCLMA 204 (212)
Q Consensus 166 ldl~~~lg~sts~l~k~l~~~----~~~~~~vn~~r~~~gl~~ 204 (212)
-|+.+..|+|++.++|+|... +..+..|-+.-.+-|-.|
T Consensus 14 ~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~p 56 (344)
T 3kjx_A 14 RDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVP 56 (344)
T ss_dssp HHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 588899999999999999875 455666766666666554
No 26
>2rrf_A Zinc finger FYVE domain-containing protein 21; zfyve21, PH, unknown function; NMR {Homo sapiens}
Probab=27.01 E-value=1.6e+02 Score=23.62 Aligned_cols=85 Identities=26% Similarity=0.358 Sum_probs=45.3
Q ss_pred CCccccceeEeeeCCCCCCCccccChh-----hhhccceEEEEe-eCCCCCCCCCccCceEEEEEecCC------cEEEE
Q 036979 27 GPSIRMGFHHCSCPASKKKNYLELTDD-----ELLRECEMHTYK-SSGPGGQHRNKCETAVRLKHVPTG------VIAQA 94 (212)
Q Consensus 27 p~~~~~~~~~~s~~~~~~~~~i~i~~~-----~L~~~~~i~~~R-sSGPGGQ~VNKt~saVrl~HlPtG------Ivv~~ 94 (212)
..+++..+..| ...++.++|.++-+ +|.+-..+++.. ++.|||- |++.+.+.|++.+.| +.+..
T Consensus 29 ~~sek~e~~vC--rLS~nhR~L~ldgdsh~eIels~I~~vqiL~eg~~~ggg--~~rasGm~l~Yk~~g~~~~~ql~lt~ 104 (141)
T 2rrf_A 29 GNSEKPETMTC--RLSNNQRYLFLDGDSHYEIEIVHISTVQILTEGFPPGGG--NARATGMFLQYTVPGTEGVTQLKLTV 104 (141)
T ss_dssp SSCCSCEEEEE--EECTTSSEEEEESSSEEEEETTTCCCEECCCCSSCSSSS--SCCCSCCEEEECCTTSSSCEEEEEEC
T ss_pred cCCCCCceEEE--EecCCeeEEEEcCCCCCcEEeeeeeEEEEeccCCCCCCC--cceeeEEEEEeeCCCccceeEEEEee
Confidence 34444434444 33333445554221 233334566665 7888643 778899999999887 45555
Q ss_pred ccc----ccHHHHHHHHHHHHHHHH
Q 036979 95 AED----RSQHKNRALALSRLPTFL 115 (212)
Q Consensus 95 ~e~----RSq~~Nk~~Al~~L~~~l 115 (212)
.++ |-|..-=-.||.+-..+|
T Consensus 105 ~~d~~~~kk~s~aWlaAm~KA~Kll 129 (141)
T 2rrf_A 105 VEDVTVGRRQAVAWLVAMHKAAKLL 129 (141)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcchhhhHHHHHHHHHHHHHH
Confidence 554 334333344444444433
No 27
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=25.54 E-value=50 Score=26.72 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=35.3
Q ss_pred HHhcCChhHHHHHhhcC-hhHHHHHHHHHHhcccccccccCCC
Q 036979 170 LRLLLSTGALSRLILSD-DSLRMAVNEFRTSKCLMAYFNSNLP 211 (212)
Q Consensus 170 ~~lg~sts~l~k~l~~~-~~~~~~vn~~r~~~gl~~~~~~~~~ 211 (212)
+.+|+|++.|.++++.- -+....+++.|-++-...|-++++|
T Consensus 193 ~~~~~S~~~l~r~fk~~G~t~~~~l~~~Rl~~A~~lL~~~~~s 235 (276)
T 3gbg_A 193 GELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFK 235 (276)
T ss_dssp HHHTCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHCcCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 69999999999999752 4788899999999888888777764
No 28
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=24.66 E-value=27 Score=23.74 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCCCCCCCCc--cCceEEEEEecCC----c-EEEEcccccHHHHHHHHHHHHHHH
Q 036979 67 SGPGGQHRNK--CETAVRLKHVPTG----V-IAQAAEDRSQHKNRALALSRLPTF 114 (212)
Q Consensus 67 SGPGGQ~VNK--t~saVrl~HlPtG----I-vv~~~e~RSq~~Nk~~Al~~L~~~ 114 (212)
=||||.++|+ -+|.|+|..-+.| . .|... . .+-+.|.+.+..+
T Consensus 20 IG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~--~---~~v~~A~~~I~~i 69 (71)
T 1vig_A 20 IGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD--P---QGVQQAKRELLEL 69 (71)
T ss_dssp TCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES--S---HHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC--H---HHHHHHHHHHHHH
Confidence 3899999995 5778888776666 3 33332 2 3567777766553
No 29
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=24.60 E-value=64 Score=23.32 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=31.6
Q ss_pred CCCCCCCCCc--cCceEEEEEecCC------cEEEEcccccHHHHHHHHHHHHHHHHHHH
Q 036979 67 SGPGGQHRNK--CETAVRLKHVPTG------VIAQAAEDRSQHKNRALALSRLPTFLALK 118 (212)
Q Consensus 67 SGPGGQ~VNK--t~saVrl~HlPtG------Ivv~~~e~RSq~~Nk~~Al~~L~~~l~~~ 118 (212)
=|+||-++|+ .+|.|+|..-+.| -.|..... ..+-+.|.+.+..++...
T Consensus 32 IGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~---~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 32 IGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY---EKNTEAARDAILRIVGEL 88 (97)
T ss_dssp SCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHHH
Confidence 3889999885 4677887765555 13333332 346778888888776543
No 30
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=24.51 E-value=38 Score=29.34 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=35.2
Q ss_pred HHhcCChhHHHHHhhcC--hhHHHHHHHHHHhcccccccccCCC
Q 036979 170 LRLLLSTGALSRLILSD--DSLRMAVNEFRTSKCLMAYFNSNLP 211 (212)
Q Consensus 170 ~~lg~sts~l~k~l~~~--~~~~~~vn~~r~~~gl~~~~~~~~~ 211 (212)
+.+|+|...|.++++.. -+....+++.|-.+-.+.|-+++++
T Consensus 329 ~~~~~s~~~l~r~f~~~~g~s~~~~~~~~r~~~a~~~L~~~~~~ 372 (412)
T 4fe7_A 329 DAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLLISTTLS 372 (412)
T ss_dssp HHTTCCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 69999999999999986 6788889999988887777666653
No 31
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=23.99 E-value=30 Score=28.28 Aligned_cols=43 Identities=16% Similarity=0.059 Sum_probs=29.7
Q ss_pred HHHHhcCChhHHHHHhhcC--hhHHHHHHHHHHhcccccccccCC
Q 036979 168 LLLRLLLSTGALSRLILSD--DSLRMAVNEFRTSKCLMAYFNSNL 210 (212)
Q Consensus 168 l~~~lg~sts~l~k~l~~~--~~~~~~vn~~r~~~gl~~~~~~~~ 210 (212)
+.+.+|+|++.|.++++.. -+....+++.|.++-...|-++++
T Consensus 25 la~~~~~s~~~l~r~f~~~~g~s~~~~~~~~Rl~~a~~~L~~~~~ 69 (292)
T 1d5y_A 25 VAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTAR 69 (292)
T ss_dssp HHTTTSSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3467888888888888763 566777777777766666655544
No 32
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=23.30 E-value=29 Score=24.87 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=29.3
Q ss_pred CCCCCCCCc--cCceEEEEEec----CC-cEEEEcccccHHHHHHHHHHHHHHHHHHH
Q 036979 68 GPGGQHRNK--CETAVRLKHVP----TG-VIAQAAEDRSQHKNRALALSRLPTFLALK 118 (212)
Q Consensus 68 GPGGQ~VNK--t~saVrl~HlP----tG-Ivv~~~e~RSq~~Nk~~Al~~L~~~l~~~ 118 (212)
||||.++++ -+|.|+|..-+ +| +.|... ..+-+.|.+.+.+++...
T Consensus 33 G~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-----~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 33 GKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-----KEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-----HHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-----HHHHHHHHHHHHHHhhcc
Confidence 899999995 35566655433 46 444432 456677888877776543
No 33
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.14 E-value=62 Score=23.34 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=31.5
Q ss_pred CCCCCCCCc--cCceEEEEEecCCc----EEEEcccccHHHHHHHHHHHHHHHHHHHHH
Q 036979 68 GPGGQHRNK--CETAVRLKHVPTGV----IAQAAEDRSQHKNRALALSRLPTFLALKVR 120 (212)
Q Consensus 68 GPGGQ~VNK--t~saVrl~HlPtGI----vv~~~e~RSq~~Nk~~Al~~L~~~l~~~~~ 120 (212)
||||..+++ -+|.|+|..-+.|- .|+.... ..|-+.|.+.+..++....+
T Consensus 33 G~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~---~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 33 GARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL---PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC---HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC---HHHHHHHHHHHHHHHHHHHH
Confidence 788888884 46677776544551 2333322 26788888888887765443
No 34
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.98 E-value=84 Score=23.02 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=30.2
Q ss_pred CCCCCCCCccC---ceEEEEEecCC-cEEEEcccccHHHHHHHHHHHHHHHHHHH
Q 036979 68 GPGGQHRNKCE---TAVRLKHVPTG-VIAQAAEDRSQHKNRALALSRLPTFLALK 118 (212)
Q Consensus 68 GPGGQ~VNKt~---saVrl~HlPtG-Ivv~~~e~RSq~~Nk~~Al~~L~~~l~~~ 118 (212)
|+||+++++.. ++|+| ++|.+ =.|+.... ...-+.|...|..++...
T Consensus 43 G~~G~~Ik~i~~~~~~v~I-~fp~~~~~ItI~G~---~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 43 GKKGQNLAKITQQMPKVHI-EFTEGEDKITLEGP---TEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp TTTTCHHHHHHHHCSSSEE-EECSSSCEEEEEEC---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCcEE-EeCCCCCEEEEECC---HHHHHHHHHHHHHHHHHH
Confidence 88999999643 36777 46733 34444443 455677888887777543
No 35
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=21.61 E-value=53 Score=25.96 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=22.3
Q ss_pred EEEEeeCCCCCCCCCccCceEEEEEecCC
Q 036979 61 MHTYKSSGPGGQHRNKCETAVRLKHVPTG 89 (212)
Q Consensus 61 i~~~RsSGPGGQ~VNKt~saVrl~HlPtG 89 (212)
=++.||+|--.|-+.|....+.|+ +|+|
T Consensus 79 g~laRsAGt~a~ii~ke~~~~~vr-LPSG 106 (136)
T 2ftc_B 79 AQYIRAAGTCGVLLRKVNGTAIIQ-LPSK 106 (136)
T ss_pred cEEEEeCCCeEEEEEecCCEEEEE-CCCC
Confidence 357999999999999966666555 8988
No 36
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.25 E-value=68 Score=23.50 Aligned_cols=63 Identities=16% Similarity=-0.004 Sum_probs=40.3
Q ss_pred ccccChhhhhccceEEEEeeCCCCCCCCCc--cCceEEEEEecCC-----cEEEEcccccHHHHHHHHHHHHHHHHHHHH
Q 036979 47 YLELTDDELLRECEMHTYKSSGPGGQHRNK--CETAVRLKHVPTG-----VIAQAAEDRSQHKNRALALSRLPTFLALKV 119 (212)
Q Consensus 47 ~i~i~~~~L~~~~~i~~~RsSGPGGQ~VNK--t~saVrl~HlPtG-----Ivv~~~e~RSq~~Nk~~Al~~L~~~l~~~~ 119 (212)
.+.++++.+- +==|+||-++++ -+|.|.|.--+.| +.|... . .+-+.|.+.+..++....
T Consensus 20 ~i~Ip~~~ig--------~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~----~-e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 20 EVEVPFDLHR--------YVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL----A-ANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp EEECCHHHHH--------HHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC----H-HHHHHHHHHHHHHHHHHH
T ss_pred EEEEChHHcc--------ceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC----H-HHHHHHHHHHHHHHhhHH
Confidence 5556666541 122899999995 5677887655554 334432 2 577889888888877655
Q ss_pred Hhh
Q 036979 120 RSS 122 (212)
Q Consensus 120 ~e~ 122 (212)
.+.
T Consensus 87 ~~~ 89 (104)
T 2ctk_A 87 AEQ 89 (104)
T ss_dssp HHH
T ss_pred HhH
Confidence 444
No 37
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=21.10 E-value=60 Score=21.52 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.9
Q ss_pred hHHHHHhhcChhHHHHHHHHHHhc
Q 036979 177 GALSRLILSDDSLRMAVNEFRTSK 200 (212)
Q Consensus 177 s~l~k~l~~~~~~~~~vn~~r~~~ 200 (212)
-++..+|+++|.+.+++=.+|+.+
T Consensus 20 qqvl~ILksnPqLMAAfIkQR~~~ 43 (47)
T 1zoq_C 20 QQVLNILKSNPQLMAAFIKQRTAK 43 (47)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHH
Confidence 468899999999999999888765
No 38
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=20.45 E-value=79 Score=20.14 Aligned_cols=27 Identities=11% Similarity=0.242 Sum_probs=21.8
Q ss_pred HHHHHhcCChhHHHHHhhcChhHHHHH
Q 036979 167 SLLLRLLLSTGALSRLILSDDSLRMAV 193 (212)
Q Consensus 167 dl~~~lg~sts~l~k~l~~~~~~~~~v 193 (212)
++.+.+|++++.|.+-++....++..|
T Consensus 30 ~vA~~~gIs~~tl~~W~~~~~~~~~~~ 56 (59)
T 2glo_A 30 ATARKYNIHRRQIQKWLQCESNLRSSV 56 (59)
T ss_dssp HHHHHTTSCHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 344789999999999998887777766
Done!