RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 036979
         (212 letters)



>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 112

 Score = 60.0 bits (145), Expect = 1e-12
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 25/79 (31%)

Query: 58  ECEMHTYKSSGPGGQHRNKCETAVRLKH-------------------------VPTGVIA 92
              +   +SSGPGGQ+ NK  +   ++                              ++ 
Sbjct: 21  RLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVL 80

Query: 93  QAAEDRSQHKNRALALSRL 111
            +   R Q +N A  L ++
Sbjct: 81  TSESSRYQFRNLAECLQKI 99


>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
           {Escherichia coli [TaxId: 562]}
          Length = 344

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 4   EFKNNKIITLLTCWTGLDWADWAGPSIRMGFHH-----CSCPASKKKNYLELTDDELLRE 58
           +   + +   L   +G         +   G  H      +         L   +     +
Sbjct: 155 KISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPA---D 211

Query: 59  CEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRL 111
             + T++SSG GGQH N  ++A+R+ H+PTG++ +  ++RSQHKN+A ALS L
Sbjct: 212 LRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 264


>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
           {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 23/55 (41%), Positives = 39/55 (70%)

Query: 57  RECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRL 111
            + ++ T+++SG GGQ+ NK E+AVR+ H+PTG++     +RSQ++N+  AL  L
Sbjct: 196 EDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRIL 250


>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 25/54 (46%), Positives = 39/54 (72%)

Query: 58  ECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAEDRSQHKNRALALSRL 111
           +  +  Y++SG GGQH N+ E+AVR+ H+PTG++ Q   DRSQHKN+  A+ ++
Sbjct: 235 DLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQM 288


>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein
           1 (Tip47), C-terminal domain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 226

 Score = 27.1 bits (60), Expect = 1.4
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 46  NYLELTDDELLRECEMHTYKSSGPGGQHRNKCETAVRLKHVPTGVIAQAAE------DRS 99
           N L LT+ EL                Q R +    VRL  +   +   A E        +
Sbjct: 1   NRLPLTEAELALIATPPEDSDMASLQQQRQEQNYFVRLGSLSERLRNHAYEHSLGKLQNA 60

Query: 100 QHKNRALALSRLPTFLAL--KVRSSVNLGAYSPPLQLLQI 137
           + K +   L +L + L L   V+  V+        +L Q+
Sbjct: 61  RQKAQE-TLQQLTSVLGLMESVKQGVDQRLGEGQEKLHQM 99


>d1xwea_ b.40.3.3 (A:) Complement C5 domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 151

 Score = 25.2 bits (55), Expect = 4.9
 Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 33 GFHHCSCPASKKKNYLELTDDELLRE-CEMH 62
          G H   C   +++  L ++ +   +  C+  
Sbjct: 1  GSHMADCGQMQEELDLTISAETRKQTACKPE 31


>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 100

 Score = 24.5 bits (53), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 33 GFHHCSCPASKKKNYLEL 50
          G++ C  PAS K  YL L
Sbjct: 58 GYYVCYTPASNKNTYLYL 75


>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease,
           catalytic domain {Klebsiella aerogenes [TaxId: 28451]}
          Length = 385

 Score = 25.0 bits (55), Expect = 8.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 61  MHTYKSSGPGGQHRNKCETAVRLKHV 86
           +HT+ + G GG H     TA    ++
Sbjct: 139 IHTFHTEGAGGGHAPDIITACAHPNI 164


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 750,731
Number of extensions: 31286
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 9
Length of query: 212
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,295,466
Effective search space: 169706046
Effective search space used: 169706046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)