BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036983
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 34.7 bits (78), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 18/42 (42%)

Query: 10 NPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICG 51
          N E G      C C  +L   H+ C   W  I  N  C+ICG
Sbjct: 13 NEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54


>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
          Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 29.6 bits (65), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 1  ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 50
          ICH   D  +P     +   C C   L   H+ C + W K    + CE+C
Sbjct: 20 ICHCEGDDESP-----LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC 64


>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
           Receptors
          Length = 725

 Score = 28.5 bits (62), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 11  PESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVA 58
           PE+ +P +L    KD+   A     + W  + G K   +CG  AS +A
Sbjct: 566 PETSLPTQL----KDNFNRAPSN--QNWLTVSGGKLSTVCGAVASGLA 607


>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
          Length = 725

 Score = 28.5 bits (62), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 11  PESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVA 58
           PE+ +P +L    KD+   A     + W  + G K   +CG  AS +A
Sbjct: 566 PETSLPTQL----KDNFNRAPSN--QNWLTVSGGKLSTVCGAVASGLA 607


>pdb|3SAO|A Chain A, The Siderocalin Ex-Fabp Functions Through Dual Ligand
           Specificities
 pdb|3SAO|B Chain B, The Siderocalin Ex-Fabp Functions Through Dual Ligand
           Specificities
          Length = 160

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 36  EAWFKIKGNKTCEICGTT--------ASNVAGANEADPMEQWTESNDATPTASAVPIHQA 87
           E ++  +  KT E+  T         A+ V        M  ++ S + +PTA A+    A
Sbjct: 73  EVYYSEEAEKTVEVLDTDYKSYAVIFATRVKDGRTLHMMRLYSRSREVSPTAMAIFRKLA 132

Query: 88  ETRNF 92
             RN+
Sbjct: 133 RERNY 137


>pdb|3SYJ|A Chain A, Crystal Structure Of The Haemophilus Influenzae Hap
           Adhesin
          Length = 1011

 Score = 27.3 bits (59), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 39  FKIKGNKTCEICGTTASNVAGANEADPMEQWTESNDATPTASAVPIHQAE--TRNFWQG 95
           F+IKG           S V   N +     WT SN+A  T   VP  Q    TR+ W G
Sbjct: 632 FQIKG----------GSAVVSRNVSSIEGNWTVSNNANATFGVVPNQQNTICTRSDWTG 680


>pdb|3K7L|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
           Distinct Activities Highlight The Disulfide Patterns In
           The D Domain Of Adamalysin Family Proteins
          Length = 422

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 1   ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAE 36
           IC+ S    +P  G+ +E G  C D +  +++QC +
Sbjct: 383 ICNCSISPRDPNYGM-VEPGTKCGDGMVCSNRQCVD 417


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.132    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,909,166
Number of Sequences: 62578
Number of extensions: 138000
Number of successful extensions: 263
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 12
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)