BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036983
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O41933|MIR1_MHV68 E3 ubiquitin-protein ligase MIR1 OS=Murid herpesvirus 4 GN=K3
PE=1 SV=1
Length = 201
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGA 60
ICH PE P++ C CK A +H+ C W + +TC +CGT S
Sbjct: 10 ICH------QPEG--PLKRFCGCKGSCAVSHQDCLRGWLETSRRQTCALCGTPYSM---K 58
Query: 61 NEADPMEQWT 70
+ P+ +WT
Sbjct: 59 WKTKPLREWT 68
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGA 60
ICH D N E + C C L HK C E W CE+C T
Sbjct: 66 ICHEGQDVCNSEGLLS---PCDCTGTLGTVHKSCLEKWLSSSNTSYCELCHT---EFTIE 119
Query: 61 NEADPMEQW 69
P+ +W
Sbjct: 120 RRPRPLTEW 128
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 2 CHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGAN 61
C + + AN E+ + C C L A HK C E W CE+C T A
Sbjct: 64 CRICHEGANGEN---LLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHT---EFAVEK 117
Query: 62 EADPMEQWTE 71
P+ +W +
Sbjct: 118 RPRPLTEWLK 127
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 2 CHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGAN 61
C + + AN E+ + C C L A HK C E W CE+C T A
Sbjct: 64 CRICHEGANGENLLS---PCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHT---EFAVEK 117
Query: 62 EADPMEQWTE 71
P+ +W +
Sbjct: 118 RPRPLTEWLK 127
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 21 CSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTT 53
C C +L H+ C W I N C+ICG
Sbjct: 24 CGCTGELENVHRSCLSTWLTISRNTACQICGVV 56
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 2 CHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGT 52
C + + AN ES + C C L A HK C E W CE+C T
Sbjct: 64 CRICHEGANGESLLS---PCGCSGTLGAVHKSCLERWLSSSNTSYCELCHT 111
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 2 CHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGAN 61
C + + AN E + C C L A HK C E W CE+C T A
Sbjct: 64 CRICHEGANGEC---LLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHT---EFAVEK 117
Query: 62 EADPMEQWTE 71
P+ +W +
Sbjct: 118 RPRPLTEWLK 127
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGA 60
IC + + N E + C C L HK C E W CE+C T A
Sbjct: 63 ICRICHEGGNGERLLS---PCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHT---EFAVE 116
Query: 61 NEADPMEQW 69
P+ +W
Sbjct: 117 RRPRPVTEW 125
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGA 60
IC + + N E + C C L HK C E W CE+C T A
Sbjct: 63 ICRICHEGGNGERLLS---PCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHT---EFAVE 116
Query: 61 NEADPMEQW 69
P+ +W
Sbjct: 117 RRPRPVTEW 125
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 15 VPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGT 52
+P C+C DL H++C + W + G K C+ C T
Sbjct: 141 LPEARYCNCYGDLQYCHEECLKTWISMSGEKKCKFCQT 178
>sp|P32225|LAP_SWPVK E3 ubiquitin-protein ligase LAP OS=Swinepox virus (strain Kasza)
GN=LAP PE=3 SV=1
Length = 155
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 21 CSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGANEADPMEQWTES 72
C+CK++ H +C + W + ++C++C N+ + P QW S
Sbjct: 19 CNCKNEYKVVHDECMKKWIQYSRERSCKLCN-KEYNIISVRK--PFSQWVFS 67
>sp|Q91T40|LAP_LSDV E3 ubiquitin-protein ligase LAP OS=Lumpy skin disease virus
GN=LW010 PE=3 SV=1
Length = 162
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 21 CSCKDDLAAAHKQCAEAWFKIKGNKTCEICG 51
C+CK++ HK C E W N C+IC
Sbjct: 25 CNCKNEFKIVHKNCLEEWINFSHNTKCKICN 55
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 18/112 (16%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGA 60
ICH D +P + C C L H+ C W K + CE+C +
Sbjct: 82 ICHCEGDEESP-----LITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELC---KYDFIME 133
Query: 61 NEADPMEQWTESNDATPTASAVPIHQAETRNFWQGHRFLNFLLACMVFAFVI 112
+ P+ +W + T +E R + F + C+V++ +
Sbjct: 134 TKLKPLRKWEKLQMTT----------SERRKIFCSVTFHVIAITCVVWSLYV 175
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 18/112 (16%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGA 60
ICH D +P + C C L H+ C W K + CE+C +
Sbjct: 82 ICHCEGDEESP-----LITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELC---KYDFIME 133
Query: 61 NEADPMEQWTESNDATPTASAVPIHQAETRNFWQGHRFLNFLLACMVFAFVI 112
+ P+ +W + T +E R + F + C+V++ +
Sbjct: 134 TKLKPLRKWEKLQMTT----------SERRKIFCSVTFHVIAVTCVVWSLYV 175
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 21 CSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 50
C+C +L H QC W + N C++C
Sbjct: 30 CACTGELDVVHPQCLSTWLTVSRNTACQMC 59
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 50
IC + PE P+ C C + H++C W K + CE+C
Sbjct: 8 ICRVCRSEGTPEK--PLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELC 55
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 50
IC + PE P+ C C + H++C W K + CE+C
Sbjct: 8 ICRVCRSEGTPEK--PLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELC 55
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 50
IC + PE P+ C C + H++C W K + CE+C
Sbjct: 8 ICRVCRSEGTPEK--PLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELC 55
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 18/112 (16%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGA 60
ICH D +P + C C L H+ C + W K + CE+C
Sbjct: 80 ICHCEGDDESP-----LITPCRCTGSLHFVHQTCLQQWIKSSDTRCCELC---KYEFIME 131
Query: 61 NEADPMEQWTESNDATPTASAVPIHQAETRNFWQGHRFLNFLLACMVFAFVI 112
+ P+ +W + + + +E R F + C+V++ +
Sbjct: 132 TKLKPLRKWEK----------LQMTSSERRKIMCSVTFHVIAITCVVWSLYV 173
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNK--------TCEIC 50
+C + AA S + IE C C L H++C + W + K N TCE+C
Sbjct: 552 LCRICQMAAASSSNLLIE-PCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELC 608
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 16 PIELGCSCKDDLAAAHKQCAEAWFKIKGN--------KTCEIC 50
P+ C C L H++C + W K+K KTCE+C
Sbjct: 654 PLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMC 696
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 16 PIELGCSCKDDLAAAHKQCAEAWFKIK--------GNKTCEIC 50
P+ C C L H++C + W K+K KTCE+C
Sbjct: 672 PLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMC 714
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 18/112 (16%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGA 60
ICH D +P + C C L H+ C + W K + CE+C
Sbjct: 82 ICHCEGDDESP-----LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC---KYEFIME 133
Query: 61 NEADPMEQWTESNDATPTASAVPIHQAETRNFWQGHRFLNFLLACMVFAFVI 112
+ P+ +W + + + +E R F + C+V++ +
Sbjct: 134 TKLKPLRKWEK----------LQMTSSERRKIMCSVTFHVIAITCVVWSLYV 175
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 2 CHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNK--------TCEIC 50
C + AA S + IE C C L H++C + W + K N TCE+C
Sbjct: 554 CRICQMAAASSSNLLIE-PCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELC 609
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 31 HKQCAEAWFKIKGNKTCEICGTTASNV 57
H +C + W +KGN+TC IC AS V
Sbjct: 489 HAKCVDKW--LKGNRTCPICRADASEV 513
>sp|Q9Q8T2|LAP_RFVKA E3 ubiquitin-protein ligase LAP OS=Rabbit fibroma virus (strain
Kasza) GN=s153R PE=3 SV=1
Length = 201
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 21 CSCKDDLAAAHKQCAEAWFKIK--GNKTCEICGT 52
C C+ D HK+C E W NK+C IC T
Sbjct: 31 CKCRGDNKIVHKECLEEWINTDTVKNKSCAICET 64
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGA 60
ICH D +P + C C L H+ C + W K + CE+C
Sbjct: 78 ICHCEGDDESP-----LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC---KYEFIME 129
Query: 61 NEADPMEQW 69
+ P+ +W
Sbjct: 130 TKLKPLRKW 138
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 50
IC + F A E G + C C + H+ C W +G+ TCE+C
Sbjct: 167 ICKICFQGA--EQGELLN-PCRCDGSVRYTHQLCLLKWISERGSWTCELC 213
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 2 CHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNK--------TCEIC 50
C + AA S + IE C C L H+ C + W + K N TCE+C
Sbjct: 552 CRICQMAAASSSNLLIE-PCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELC 607
>sp|Q997C2|LAP_MYXVL E3 ubiquitin-protein ligase LAP OS=Myxoma virus (strain Lausanne)
GN=LAP PE=3 SV=1
Length = 206
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 21 CSCKDDLAAAHKQCAEAWFK--IKGNKTCEIC 50
C C+ D HK+C E W + NK+C IC
Sbjct: 37 CKCRGDNKIVHKECLEEWINTDVVKNKSCAIC 68
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 50
IC + F A E G + C C + H+ C W +G+ TCE+C
Sbjct: 165 ICKICFQGA--EQGELLN-PCRCDGSVRYTHQLCLLKWISERGSWTCELC 211
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGA 60
IC + + ES P+ C C L H+ C + W K + CE+C
Sbjct: 52 ICRICHCEGDDES--PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC---KFEFIME 106
Query: 61 NEADPMEQW 69
+ P+ +W
Sbjct: 107 TKLKPLRKW 115
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 2 CHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNK--------TCEIC 50
C + AA S + IE C C L H+ C + W + K N TCE+C
Sbjct: 552 CRICQMAAASSSNLLIE-PCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELC 607
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGA 60
ICH D +P + C C L H+ C + W K + CE+C
Sbjct: 55 ICHCEGDDESP-----LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC---KFEFIME 106
Query: 61 NEADPMEQW 69
+ P+ +W
Sbjct: 107 TKLKPLRKW 115
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 50
IC + F A E G + C C + H+ C W +G+ TCE+C
Sbjct: 169 ICKICFQGA--EQGELLN-PCRCDGSVRYTHQLCLLKWISERGSWTCELC 215
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 21 CSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGANEADPMEQW 69
C C L H+ C E W CE+C A + P+ +W
Sbjct: 87 CECTGTLGTIHRSCLEHWLSSSNTSYCELCHF---RFAVERKPRPLVEW 132
>sp|Q04781|LTN1_YEAST E3 ubiquitin-protein ligase listerin OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RKR1 PE=1 SV=1
Length = 1562
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 50
IC+ A + + +P + +CK+ H C WF+ GN TC +C
Sbjct: 1510 ICYSILHAVDRK--LPSKTCPTCKNKF---HGACLYKWFRSSGNNTCPLC 1554
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 31 HKQCAEAWFKIKGNKTCEICGTTASNVAGANE 62
H +C + W +K N+TC IC AS V E
Sbjct: 321 HAKCVDKW--LKANRTCPICRADASEVPREAE 350
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 21 CSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGANEADPMEQW 69
C C L H+ C E W CE+C A + P+ +W
Sbjct: 87 CECTGTLGTIHRSCLEHWLSSSNTSYCELCHF---RFAVERKPRPLVEW 132
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 21 CSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGANEADPMEQW 69
C C L H+ C E W CE+C A + P+ +W
Sbjct: 87 CECTGTLGTIHRSCLEHWLSSSNTSYCELCHF---RFAVERKPRPLVEW 132
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 21 CSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAGANEADPMEQW 69
C C L H+ C E W CE+C A + P+ +W
Sbjct: 87 CECTGTLGTIHRSCLEHWLSSSNTSYCELC---HFRFAVERKPRPLVEW 132
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 50
+C + F PE G + C C + H+ C W +G+ +CE+C
Sbjct: 142 LCRICFQG--PEQGELLS-PCRCSGSVRCTHEPCLIKWISERGSWSCELC 188
>sp|A8F7Q8|GCH4_THELT GTP cyclohydrolase folE2 OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=folE2 PE=3 SV=1
Length = 258
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 14 GVPIELGCSCKDDLA--AAHKQCAEAWFKIKGNK 45
GVPI C C +++ AH Q A AW IK K
Sbjct: 138 GVPIMTLCPCSKEISERGAHNQRAMAWIHIKSKK 171
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 21 CSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 50
C C L H+ C E W CE+C
Sbjct: 86 CECTGTLGTIHRSCLEHWLSSSNTSYCELC 115
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 21 CSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 50
C C L H+ C E W CE+C
Sbjct: 85 CECTGTLGTIHRSCLEHWLSSSNTSYCELC 114
>sp|Q09415|SET14_CAEEL SET domain-containing protein 14 OS=Caenorhabditis elegans
GN=set-14 PE=4 SV=2
Length = 429
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 34 CAEAWFKIKGNKTCEICGTTASN-----VAGANEADPMEQWTESNDATP 77
C + W + K N CE+CG T S A EA + +NDA P
Sbjct: 257 CVKGWMRNKENGQCELCGWTMSKDHFELCRTAEEAGIAARSRLANDAIP 305
>sp|O05496|YDHE_BACSU Uncharacterized UDP-glucosyltransferase YdhE OS=Bacillus subtilis
(strain 168) GN=ydhE PE=3 SV=2
Length = 395
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 3 HLSFDAANPESGVPIELGCSCKDDLA 28
HL +PESG P+EL C+D LA
Sbjct: 133 HLKILPLHPESGAPLELDQECEDLLA 158
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 31 HKQCAEAWFKIKGNKTCEICGTTASNV 57
H +C + W +K N+TC IC AS V
Sbjct: 403 HTKCVDKW--LKANRTCPICRADASEV 427
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 31 HKQCAEAWFKIKGNKTCEICGTTASNV 57
H +C + W +K N+TC IC AS V
Sbjct: 378 HAKCVDKW--LKANRTCPICRADASEV 402
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 50
+C + F PE G + C C + H+ C W +G +CE+C
Sbjct: 162 LCRICFQG--PEQGELLS-PCRCDGSVKCTHQPCLIKWISERGCWSCELC 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.132 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,137,427
Number of Sequences: 539616
Number of extensions: 1683141
Number of successful extensions: 4342
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 4297
Number of HSP's gapped (non-prelim): 69
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)