Query 036983
Match_columns 122
No_of_seqs 181 out of 344
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 12:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036983.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036983hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vyxa_ g.44.1.3 (A:) IE1B pro 99.3 8.3E-13 6E-17 82.0 3.6 41 15-55 18-58 (60)
2 d1v87a_ g.44.1.1 (A:) Deltex p 97.1 0.00027 2E-08 46.8 4.5 38 17-59 57-97 (114)
3 d1ur6b_ g.44.1.1 (B:) Not-4 N- 97.0 9.3E-05 6.8E-09 43.7 1.5 47 1-56 5-51 (52)
4 d1iyma_ g.44.1.1 (A:) EL5 RING 96.8 0.00019 1.4E-08 42.9 1.8 44 1-54 10-53 (55)
5 d3dplr1 g.44.1.1 (R:19-106) RI 96.5 0.0014 9.9E-08 42.0 4.1 33 17-56 53-85 (88)
6 d1g25a_ g.44.1.1 (A:) TFIIH Ma 95.9 0.0012 8.9E-08 40.1 1.6 33 16-54 21-53 (65)
7 d1fbva4 g.44.1.1 (A:356-434) C 95.5 0.0081 5.9E-07 37.6 4.3 40 14-59 34-73 (79)
8 d1chca_ g.44.1.1 (A:) Immediat 95.3 0.0043 3.1E-07 37.7 2.3 35 16-57 19-53 (68)
9 d1rmda2 g.44.1.1 (A:1-86) V(D) 93.1 0.043 3.2E-06 35.1 3.7 36 15-56 35-70 (86)
10 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 92.4 0.052 3.8E-06 33.2 3.2 53 15-73 20-75 (78)
11 d1jm7a_ g.44.1.1 (A:) brca1 RI 92.0 0.046 3.3E-06 35.1 2.7 36 15-55 33-69 (103)
12 d2baya1 g.44.1.2 (A:1-56) Pre- 90.1 0.066 4.8E-06 31.1 1.9 27 28-56 21-47 (56)
13 d1bora_ g.44.1.1 (A:) Acute pr 80.2 0.11 7.7E-06 30.5 -0.8 35 15-59 18-52 (56)
14 d2epra1 g.37.1.1 (A:350-384) P 75.3 0.24 1.7E-05 26.9 -0.3 20 41-60 2-21 (35)
15 d2c2la2 g.44.1.2 (A:225-304) S 74.0 0.92 6.7E-05 27.3 2.3 35 15-55 19-53 (80)
16 d2axtt1 f.23.34.1 (T:1-30) Pho 70.3 1.9 0.00014 22.3 2.6 19 99-117 6-24 (30)
17 d1jm7b_ g.44.1.1 (B:) bard1 RI 64.3 0.6 4.4E-05 29.1 -0.2 24 28-55 43-66 (97)
18 d1wgma_ g.44.1.2 (A:) Ubiquiti 54.0 1.5 0.00011 27.6 0.4 53 15-73 34-89 (98)
19 d1a1ia3 g.37.1.1 (A:160-187) Z 42.1 3.2 0.00023 21.3 0.4 11 46-56 5-15 (28)
20 d1xrda1 f.3.1.1 (A:1-52) Light 35.3 19 0.0014 20.6 3.3 31 90-120 2-32 (52)
21 d1srka_ g.37.1.1 (A:) Zinc fin 33.4 5.7 0.00042 20.9 0.6 14 46-59 9-22 (35)
22 d2adra1 g.37.1.1 (A:102-130) A 31.8 6 0.00044 19.8 0.5 13 46-58 4-16 (29)
23 d2ct1a2 g.37.1.1 (A:8-43) Tran 31.3 6 0.00044 20.7 0.4 13 46-58 10-22 (36)
24 d2epsa1 g.37.1.1 (A:408-446) P 29.2 7.3 0.00053 20.9 0.6 14 45-58 6-19 (39)
25 d1a1ia2 g.37.1.1 (A:132-159) Z 28.6 7.2 0.00052 19.5 0.4 12 46-57 5-16 (28)
26 d2cota2 g.37.1.1 (A:7-44) Zinc 28.4 8 0.00058 20.3 0.6 15 45-59 13-27 (38)
27 d1xjha_ g.81.1.1 (A:) HSP33, C 28.2 16 0.0012 20.9 2.1 43 17-59 3-52 (62)
28 d1x6ha2 g.37.1.1 (A:8-43) Tran 27.9 8.1 0.00059 20.1 0.6 13 46-58 10-22 (36)
29 d1joca1 g.50.1.1 (A:1348-1411) 25.2 4.1 0.0003 23.7 -1.1 20 37-56 1-20 (64)
30 d1vzya2 g.81.1.1 (A:234-290) H 24.7 19 0.0014 20.3 1.9 33 26-58 12-46 (57)
31 d2dlqa3 g.37.1.1 (A:63-92) GLI 22.8 12 0.00084 19.2 0.6 12 45-56 5-16 (30)
32 d1x6ea2 g.37.1.1 (A:41-66) Zin 20.8 13 0.00098 18.3 0.6 13 46-58 4-16 (26)
33 d1sp1a_ g.37.1.1 (A:) Transcri 20.5 12 0.0009 18.6 0.4 13 46-58 4-16 (29)
No 1
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=99.28 E-value=8.3e-13 Score=81.97 Aligned_cols=41 Identities=29% Similarity=0.791 Sum_probs=38.7
Q ss_pred CceecCCCccchhhhhhHHHHHHHHhhcCCCeeecCCcccc
Q 036983 15 VPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTAS 55 (122)
Q Consensus 15 ~~l~~pC~CkGsL~~vH~~Cl~~W~~~kg~~~CEIC~~~~~ 55 (122)
++++.||.|+|..+++|+.||++|++.+++.+|++|+++|+
T Consensus 18 ~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~ 58 (60)
T d1vyxa_ 18 NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence 45789999999999999999999999999999999999986
No 2
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.10 E-value=0.00027 Score=46.81 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=29.4
Q ss_pred eecCCCccchhhhhhHHHHHHHHhhc---CCCeeecCCcccccccC
Q 036983 17 IELGCSCKDDLAAAHKQCAEAWFKIK---GNKTCEICGTTASNVAG 59 (122)
Q Consensus 17 l~~pC~CkGsL~~vH~~Cl~~W~~~k---g~~~CEIC~~~~~n~~~ 59 (122)
..+||. ...|.+|+.+|++.+ +..+|-+|+..|....+
T Consensus 57 ~~~~Cg-----H~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~ 97 (114)
T d1v87a_ 57 RLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp EESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred EECCCC-----ChhhHHHHHHHHHhcCcCCCCccccccchhccCcC
Confidence 356664 789999999999975 45699999988854433
No 3
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.03 E-value=9.3e-05 Score=43.69 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCCCCCceecCCCccchhhhhhHHHHHHHHhhcCCCeeecCCccccc
Q 036983 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASN 56 (122)
Q Consensus 1 ICh~~~~~~~~e~~~~l~~pC~CkGsL~~vH~~Cl~~W~~~kg~~~CEIC~~~~~n 56 (122)
||....+ .++....++.|. ...|++|+.+|++.+ +.+|-+|++.|..
T Consensus 5 ICl~~~~-----~~~~~~~~~~Cg---H~~c~~C~~~w~~~~-~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 5 LCMEPLE-----IDDINFFPCTCG---YQICRFCWHRIRTDE-NGLCPACRKPYPE 51 (52)
T ss_dssp TTTEECC-----GGGTTCCSSSSS---CCCCHHHHHHHTTTS-CCBCTTTCCBCSC
T ss_pred CCChhhh-----CCCceEEecCCC---CccchHHHHHHHhhc-CCCCCccCCcCCC
Confidence 6765543 222233444554 689999999999854 4579999998853
No 4
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=96.85 E-value=0.00019 Score=42.90 Aligned_cols=44 Identities=23% Similarity=0.602 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCCCCCceecCCCccchhhhhhHHHHHHHHhhcCCCeeecCCccc
Q 036983 1 ICHLSFDAANPESGVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTA 54 (122)
Q Consensus 1 ICh~~~~~~~~e~~~~l~~pC~CkGsL~~vH~~Cl~~W~~~kg~~~CEIC~~~~ 54 (122)
||....+. ++.....|+ |+ ...|++|+.+|++. +.+|.+|++..
T Consensus 10 ICl~~~~~----~~~~~~l~~-C~---H~Fh~~Ci~~Wl~~--~~~CP~CR~~i 53 (55)
T d1iyma_ 10 VCLAELED----GEEARFLPR-CG---HGFHAECVDMWLGS--HSTCPLCRLTV 53 (55)
T ss_dssp TTCCCCCT----TSCCEECSS-SC---CEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred EECccccC----CCEEEEeCC-CC---CcccHHHHHHHHHh--CCcCCCCCCEe
Confidence 55555432 233445553 43 67899999999986 55799999864
No 5
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.50 E-value=0.0014 Score=42.00 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=26.4
Q ss_pred eecCCCccchhhhhhHHHHHHHHhhcCCCeeecCCccccc
Q 036983 17 IELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASN 56 (122)
Q Consensus 17 l~~pC~CkGsL~~vH~~Cl~~W~~~kg~~~CEIC~~~~~n 56 (122)
..+||. ...|.+|+.+|++. +.+|-+|+.+|..
T Consensus 53 ~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR~~~~~ 85 (88)
T d3dplr1 53 AWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 85 (88)
T ss_dssp EEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred EEcccc-----CcccHHHHHHHHHH--CCcCCCCCCcccc
Confidence 445654 67999999999987 4679999999853
No 6
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.94 E-value=0.0012 Score=40.12 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=25.9
Q ss_pred ceecCCCccchhhhhhHHHHHHHHhhcCCCeeecCCccc
Q 036983 16 PIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTA 54 (122)
Q Consensus 16 ~l~~pC~CkGsL~~vH~~Cl~~W~~~kg~~~CEIC~~~~ 54 (122)
.+++||. ...|++|+++|++. +++.|-+|++.+
T Consensus 21 ~~~~~C~-----H~fc~~Ci~~~~~~-~~~~CP~CR~~i 53 (65)
T d1g25a_ 21 LMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPL 53 (65)
T ss_dssp EEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCC
T ss_pred EEeCccC-----hHhhHHHHHHHhCc-CcCCCCCCCcCc
Confidence 3566664 57999999999974 456799999876
No 7
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.53 E-value=0.0081 Score=37.64 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=31.0
Q ss_pred CCceecCCCccchhhhhhHHHHHHHHhhcCCCeeecCCcccccccC
Q 036983 14 GVPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAG 59 (122)
Q Consensus 14 ~~~l~~pC~CkGsL~~vH~~Cl~~W~~~kg~~~CEIC~~~~~n~~~ 59 (122)
.++..+||. ...|++|+++|++. +.++|-+|++.......
T Consensus 34 ~~~~~~~Cg-----H~fC~~Ci~~wl~~-~~~~CP~Cr~~i~~~~~ 73 (79)
T d1fbva4 34 KDVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGTEP 73 (79)
T ss_dssp CCEECSSSC-----CEECHHHHHHHHHT-TCCSCTTTCCCCCCCCC
T ss_pred CCeEEeCCC-----CeeeHHHHHHHHHH-CcCcCCCCCcCccCCce
Confidence 457888873 45799999999976 45579999999875543
No 8
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=95.31 E-value=0.0043 Score=37.74 Aligned_cols=35 Identities=26% Similarity=0.636 Sum_probs=27.4
Q ss_pred ceecCCCccchhhhhhHHHHHHHHhhcCCCeeecCCcccccc
Q 036983 16 PIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNV 57 (122)
Q Consensus 16 ~l~~pC~CkGsL~~vH~~Cl~~W~~~kg~~~CEIC~~~~~n~ 57 (122)
...+||. ...|.+|+.+|++.+ ++|-+|++.+..+
T Consensus 19 ~~~~~C~-----H~Fc~~Ci~~w~~~~--~~CP~CR~~i~~~ 53 (68)
T d1chca_ 19 SMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVESV 53 (68)
T ss_dssp EEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCCE
T ss_pred cEEeCCC-----CcCcHHHHHHHHHhC--CcCCCCCcchHhh
Confidence 3567875 468999999999874 5799999987543
No 9
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=93.07 E-value=0.043 Score=35.09 Aligned_cols=36 Identities=19% Similarity=0.407 Sum_probs=28.3
Q ss_pred CceecCCCccchhhhhhHHHHHHHHhhcCCCeeecCCccccc
Q 036983 15 VPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASN 56 (122)
Q Consensus 15 ~~l~~pC~CkGsL~~vH~~Cl~~W~~~kg~~~CEIC~~~~~n 56 (122)
++..+||. ....+.|+++|++.+ +++|-+|+..+..
T Consensus 35 ~pv~~~Cg-----H~FC~~Ci~~~~~~~-~~~CP~Cr~p~~~ 70 (86)
T d1rmda2 35 DPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (86)
T ss_dssp SEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred cceecCCC-----ChhhHHHHHHHHhhC-CCcCcccCCCCCh
Confidence 57788875 568899999999864 5679999987643
No 10
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=92.42 E-value=0.052 Score=33.16 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=35.9
Q ss_pred CceecCCCccchhhhhhHHHHHHHHhhcCCCeeecCCccccc---ccCCCCCCchhhhcccC
Q 036983 15 VPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASN---VAGANEADPMEQWTESN 73 (122)
Q Consensus 15 ~~l~~pC~CkGsL~~vH~~Cl~~W~~~kg~~~CEIC~~~~~n---~~~~~~~~~~e~w~~~~ 73 (122)
+|..++|. ...-++|+++|++. +..+|-+|+..... +|.....+.++.|-+.+
T Consensus 20 dPV~~~cg-----h~fc~~ci~~~~~~-~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~ 75 (78)
T d1t1ha_ 20 DPVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLHAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp SEEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred CceEccCC-----CcchHHHHHHHHHH-CCCCCCcccccCCcccccchHHHHHHHHHHHHHh
Confidence 47777764 34778899999986 45689999988743 22334455677775543
No 11
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.96 E-value=0.046 Score=35.12 Aligned_cols=36 Identities=19% Similarity=0.450 Sum_probs=28.7
Q ss_pred CceecCCCccchhhhhhHHHHHHHHhhcC-CCeeecCCcccc
Q 036983 15 VPIELGCSCKDDLAAAHKQCAEAWFKIKG-NKTCEICGTTAS 55 (122)
Q Consensus 15 ~~l~~pC~CkGsL~~vH~~Cl~~W~~~kg-~~~CEIC~~~~~ 55 (122)
+|..+||. ...++.|+.+|++.++ ...|-+|+..+.
T Consensus 33 ~pv~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (103)
T d1jm7a_ 33 EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (103)
T ss_dssp SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CeEEcCCC-----CchhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence 46777863 5799999999998754 568999998874
No 12
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=90.11 E-value=0.066 Score=31.09 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHhhcCCCeeecCCccccc
Q 036983 28 AAAHKQCAEAWFKIKGNKTCEICGTTASN 56 (122)
Q Consensus 28 ~~vH~~Cl~~W~~~kg~~~CEIC~~~~~n 56 (122)
...+++|+++|++.++ +|-+|++....
T Consensus 21 h~fc~~cI~~~l~~~~--~CP~c~~~l~~ 47 (56)
T d2baya1 21 TIFEKSLLEQYVKDTG--NDPITNEPLSI 47 (56)
T ss_dssp EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred CcccHHHHHHHHhhcc--CCCccCCcCCH
Confidence 5689999999999865 79999988754
No 13
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=80.20 E-value=0.11 Score=30.52 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=25.8
Q ss_pred CceecCCCccchhhhhhHHHHHHHHhhcCCCeeecCCcccccccC
Q 036983 15 VPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNVAG 59 (122)
Q Consensus 15 ~~l~~pC~CkGsL~~vH~~Cl~~W~~~kg~~~CEIC~~~~~n~~~ 59 (122)
++..+||. ...|+.|+++| +.+|-+|++.+..-++
T Consensus 18 ~p~~lpCg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~~~~ 52 (56)
T d1bora_ 18 CPKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSCCSS
T ss_pred CCEEecCC-----CHHhHHHHHcC-----CCcCcCCCCcccCCCC
Confidence 46778865 46799998754 6789999988865443
No 14
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.31 E-value=0.24 Score=26.95 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=16.1
Q ss_pred hcCCCeeecCCcccccccCC
Q 036983 41 IKGNKTCEICGTTASNVAGA 60 (122)
Q Consensus 41 ~kg~~~CEIC~~~~~n~~~~ 60 (122)
.+.+-.||+||..|+.+.-+
T Consensus 2 ~rk~~~ce~cgk~frdvyhl 21 (35)
T d2epra1 2 TRKQVACEICGKIFRDVYHL 21 (35)
T ss_dssp CCCSEEETTTTEEESSHHHH
T ss_pred cchhhhHHHHHHHHHHHHHH
Confidence 35567899999999988764
No 15
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=73.96 E-value=0.92 Score=27.30 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=26.6
Q ss_pred CceecCCCccchhhhhhHHHHHHHHhhcCCCeeecCCcccc
Q 036983 15 VPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTAS 55 (122)
Q Consensus 15 ~~l~~pC~CkGsL~~vH~~Cl~~W~~~kg~~~CEIC~~~~~ 55 (122)
+|..+||+- ..-+.|+++|++. ++.+|-+|+....
T Consensus 19 dPv~~~cGh-----tfc~~ci~~~l~~-~~~~cP~c~~~l~ 53 (80)
T d2c2la2 19 EPCITPSGI-----TYDRKDIEEHLQR-VGHFNPVTRSPLT 53 (80)
T ss_dssp SEEECSSCC-----EEETTHHHHHHHH-TCSSCTTTCCCCC
T ss_pred hhcccCCcC-----eecHHHHHHHHhc-CCccCCCcccccc
Confidence 477888763 4667999999976 4568999998763
No 16
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=70.28 E-value=1.9 Score=22.29 Aligned_cols=19 Identities=26% Similarity=0.747 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 036983 99 LNFLLACMVFAFVISWLFH 117 (122)
Q Consensus 99 lnfllacmv~afvi~W~f~ 117 (122)
-+|+.||++-.|+..-||+
T Consensus 6 yv~ifac~i~lfffaiffr 24 (30)
T d2axtt1 6 YVFIFACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 4688899999999988886
No 17
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.25 E-value=0.6 Score=29.15 Aligned_cols=24 Identities=21% Similarity=0.384 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHhhcCCCeeecCCcccc
Q 036983 28 AAAHKQCAEAWFKIKGNKTCEICGTTAS 55 (122)
Q Consensus 28 ~~vH~~Cl~~W~~~kg~~~CEIC~~~~~ 55 (122)
...++.|+.+|++. .|-+|+..+.
T Consensus 43 H~fC~~Ci~~~~~~----~CP~Cr~~~~ 66 (97)
T d1jm7b_ 43 HIFCSNCVSDCIGT----GCPVCYTPAW 66 (97)
T ss_dssp CCBCTTTGGGGTTT----BCSSSCCBCS
T ss_pred CchhHHHHHHHHhc----cccccCCcCc
Confidence 46899999999854 5999998764
No 18
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.97 E-value=1.5 Score=27.62 Aligned_cols=53 Identities=9% Similarity=0.175 Sum_probs=31.5
Q ss_pred CceecCCCccchhhhhhHHHHHHHHhhcCCCeeecCCcccccc---cCCCCCCchhhhcccC
Q 036983 15 VPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGTTASNV---AGANEADPMEQWTESN 73 (122)
Q Consensus 15 ~~l~~pC~CkGsL~~vH~~Cl~~W~~~kg~~~CEIC~~~~~n~---~~~~~~~~~e~w~~~~ 73 (122)
+|.++||. | ...=+.|+++|++. +.+|-+|+.....- |.......++.|-+..
T Consensus 34 dPV~~~~~--~--~ty~r~~I~~~l~~--~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~ 89 (98)
T d1wgma_ 34 DPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp SEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred HHHhcccc--c--chhhHHHHHHHHHh--cCCcccccccccchhhcchHHHHHHHHHHHHHH
Confidence 35566642 1 02348999999975 45799999886422 2222334566666543
No 19
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.11 E-value=3.2 Score=21.33 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=9.1
Q ss_pred eeecCCccccc
Q 036983 46 TCEICGTTASN 56 (122)
Q Consensus 46 ~CEIC~~~~~n 56 (122)
.|++|+..|.-
T Consensus 5 ~C~~CgrkFAr 15 (28)
T d1a1ia3 5 ACDICGRKFAR 15 (28)
T ss_dssp ECTTTCCEESS
T ss_pred ccchhhhhhhc
Confidence 69999998853
No 20
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=35.34 E-value=19 Score=20.64 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=24.3
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhhccC
Q 036983 90 RNFWQGHRFLNFLLACMVFAFVISWLFHFNI 120 (122)
Q Consensus 90 r~~W~~~~flnfllacmv~afvi~W~f~~~~ 120 (122)
.|+|.-.--...+.|--||.|++.-+.||.+
T Consensus 2 ~kiW~~fDPRr~lva~~~fL~~LAl~IHfiL 32 (52)
T d1xrda1 2 WRIWQLFDPRQALVGLATFLFVLALLIHFIL 32 (52)
T ss_dssp GGGGGTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeEecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777778888899999998888854
No 21
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.45 E-value=5.7 Score=20.85 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=11.2
Q ss_pred eeecCCcccccccC
Q 036983 46 TCEICGTTASNVAG 59 (122)
Q Consensus 46 ~CEIC~~~~~n~~~ 59 (122)
.|++|++.|..-..
T Consensus 9 ~C~~C~k~F~~~~~ 22 (35)
T d1srka_ 9 VCRICLSAFTTKAN 22 (35)
T ss_dssp ECSSSCCEESSHHH
T ss_pred cCCCCCCcccChHH
Confidence 79999999976543
No 22
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=31.79 E-value=6 Score=19.84 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=10.2
Q ss_pred eeecCCccccccc
Q 036983 46 TCEICGTTASNVA 58 (122)
Q Consensus 46 ~CEIC~~~~~n~~ 58 (122)
.|++|+..|....
T Consensus 4 ~C~~C~k~F~~~~ 16 (29)
T d2adra1 4 VCEVCTRAFARQE 16 (29)
T ss_dssp CCTTTCCCBSCHH
T ss_pred CCCCCCCCCCCch
Confidence 6999999996543
No 23
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.31 E-value=6 Score=20.71 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=10.5
Q ss_pred eeecCCccccccc
Q 036983 46 TCEICGTTASNVA 58 (122)
Q Consensus 46 ~CEIC~~~~~n~~ 58 (122)
.|++|++.|..-.
T Consensus 10 ~C~~C~k~F~~~~ 22 (36)
T d2ct1a2 10 ECYICHARFTQSG 22 (36)
T ss_dssp ECTTTCCEESCHH
T ss_pred eCCCCcccccchH
Confidence 7999999996543
No 24
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.25 E-value=7.3 Score=20.86 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=11.3
Q ss_pred CeeecCCccccccc
Q 036983 45 KTCEICGTTASNVA 58 (122)
Q Consensus 45 ~~CEIC~~~~~n~~ 58 (122)
-.||+|+..|....
T Consensus 6 y~C~~Cgk~F~~~~ 19 (39)
T d2epsa1 6 YICQSCGKGFSRPD 19 (39)
T ss_dssp EECSSSCCEESSHH
T ss_pred ccCCCCCCCcCChH
Confidence 37999999997654
No 25
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.61 E-value=7.2 Score=19.50 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=9.8
Q ss_pred eeecCCcccccc
Q 036983 46 TCEICGTTASNV 57 (122)
Q Consensus 46 ~CEIC~~~~~n~ 57 (122)
.|++|+..|..-
T Consensus 5 ~C~~C~k~F~~~ 16 (28)
T d1a1ia2 5 QCRICMRNFSRS 16 (28)
T ss_dssp ECTTTCCEESCH
T ss_pred cCCCCcCEeccc
Confidence 699999999644
No 26
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.39 E-value=8 Score=20.25 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=11.7
Q ss_pred CeeecCCcccccccC
Q 036983 45 KTCEICGTTASNVAG 59 (122)
Q Consensus 45 ~~CEIC~~~~~n~~~ 59 (122)
-.|+.|+..|.....
T Consensus 13 y~C~~CgK~F~~~s~ 27 (38)
T d2cota2 13 YKCDECGKSFSHSSD 27 (38)
T ss_dssp SBCSSSCCBCSCHHH
T ss_pred EecCCCCceeeCHHH
Confidence 479999999976543
No 27
>d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=28.19 E-value=16 Score=20.90 Aligned_cols=43 Identities=21% Similarity=0.508 Sum_probs=32.7
Q ss_pred eecCCCccch-----hhhhhHHHHHHHHhhcC--CCeeecCCcccccccC
Q 036983 17 IELGCSCKDD-----LAAAHKQCAEAWFKIKG--NKTCEICGTTASNVAG 59 (122)
Q Consensus 17 l~~pC~CkGs-----L~~vH~~Cl~~W~~~kg--~~~CEIC~~~~~n~~~ 59 (122)
+.-.|.|+-+ |+...++=++.-+...| .-+||.|+..|..-+.
T Consensus 3 v~f~C~CS~er~~~~L~~l~~~El~~~~~e~g~iev~C~fC~~~Y~f~~~ 52 (62)
T d1xjha_ 3 VEFKCTCSRERCADALKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAM 52 (62)
T ss_dssp CSCCCSSCHHHHHHHHHTSCHHHHHHHHHHHSEEEEECTTTCCEEEEEHH
T ss_pred ccEECCCCHHHHHHHHHhcCHHHHHHHHhcCCCEEEEeeCCCCEEEECHH
Confidence 3456777654 67778888888888766 5799999999987653
No 28
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.89 E-value=8.1 Score=20.07 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=10.7
Q ss_pred eeecCCccccccc
Q 036983 46 TCEICGTTASNVA 58 (122)
Q Consensus 46 ~CEIC~~~~~n~~ 58 (122)
.|++|++.|....
T Consensus 10 ~C~~C~k~F~~~~ 22 (36)
T d1x6ha2 10 ACSHCDKTFRQKQ 22 (36)
T ss_dssp ECSSSSCEESSHH
T ss_pred ECCCCCCCcCCHh
Confidence 7999999996554
No 29
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.19 E-value=4.1 Score=23.74 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=13.1
Q ss_pred HHHhhcCCCeeecCCccccc
Q 036983 37 AWFKIKGNKTCEICGTTASN 56 (122)
Q Consensus 37 ~W~~~kg~~~CEIC~~~~~n 56 (122)
+|..-+....|.+|+..|..
T Consensus 1 rW~~d~~~~~C~~C~~~F~~ 20 (64)
T d1joca1 1 KWAEDNEVQNCMACGKGFSV 20 (64)
T ss_dssp CCCCGGGCCBCTTTCCBCCS
T ss_pred CCCCcccCCcCcCcCCcccC
Confidence 35555666777777777743
No 30
>d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=24.73 E-value=19 Score=20.27 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=25.4
Q ss_pred hhhhhhHHHHHHHHhhcCC--CeeecCCccccccc
Q 036983 26 DLAAAHKQCAEAWFKIKGN--KTCEICGTTASNVA 58 (122)
Q Consensus 26 sL~~vH~~Cl~~W~~~kg~--~~CEIC~~~~~n~~ 58 (122)
.|....++=++.-++..|. -+||.|+..|..-+
T Consensus 12 ~L~~l~~~el~~~~~e~g~iev~C~fC~~~Y~f~~ 46 (57)
T d1vzya2 12 AILGLGKKEIQDMIEEDGQAEAVCHFCNEKYLFTK 46 (57)
T ss_dssp HHHTTCHHHHHHHHHHHSEEEEECTTTCCEEEEEH
T ss_pred HHHhcCHHHHHHHHHcCCCEEEEeeCCCCEEEECH
Confidence 3666777888888877654 69999999997655
No 31
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.83 E-value=12 Score=19.16 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=9.7
Q ss_pred CeeecCCccccc
Q 036983 45 KTCEICGTTASN 56 (122)
Q Consensus 45 ~~CEIC~~~~~n 56 (122)
-+|.+|+..|+.
T Consensus 5 ftcs~cqe~f~r 16 (30)
T d2dlqa3 5 FTCSVCQETFRR 16 (30)
T ss_dssp EECSSSCCEESS
T ss_pred EEeHHHHHHHHH
Confidence 479999999863
No 32
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.81 E-value=13 Score=18.29 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=10.0
Q ss_pred eeecCCccccccc
Q 036983 46 TCEICGTTASNVA 58 (122)
Q Consensus 46 ~CEIC~~~~~n~~ 58 (122)
.|+.||..|..-.
T Consensus 4 ~C~eCgK~F~~~s 16 (26)
T d1x6ea2 4 KCLECGKAFSQNS 16 (26)
T ss_dssp ECSSSCCEESSHH
T ss_pred cCCCCcCeeccCc
Confidence 5999999996543
No 33
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.50 E-value=12 Score=18.62 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=10.2
Q ss_pred eeecCCccccccc
Q 036983 46 TCEICGTTASNVA 58 (122)
Q Consensus 46 ~CEIC~~~~~n~~ 58 (122)
.|++|+..|..-.
T Consensus 4 ~C~~C~k~F~~~s 16 (29)
T d1sp1a_ 4 ACPECPKRFMRSD 16 (29)
T ss_dssp CCTTTTCCCSCSH
T ss_pred ECCcCCCeecchH
Confidence 6999999996543
Done!