BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036984
(603 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 155/503 (30%), Positives = 227/503 (45%), Gaps = 62/503 (12%)
Query: 57 LVHLQELYIRDN----DLRDSLLGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXXXXYI 112
L LQ L + +N ++ D L GA T L L+++ N P +
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDT--LTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 113 DNNDLSGSLPL-CLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPIS 171
+N+ SG LP+ L + L+VLD+S+N+ + + S L S+ L LS+N+F PI
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI- 381
Query: 172 LEPLSNLSK-LKAFNGEIYLETESHYNSLTPKF----QLTSISLSGYRDDGTFPKFLYHQ 226
L NL + K E+YL+ + P +L S+ LS GT P L
Sbjct: 382 ---LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNL 286
L++ L L GE P LM + L+ TL + N G IP + L +LN
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLE---TLILDFNDLTGEIP----SGLSNCTNLN- 490
Query: 287 SRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNN 346
+ LS NRL G IP WI RL ++ L L+NN G IPA+L + + +DL+ N
Sbjct: 491 ----WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 347 LSGHIPFCL--------VNTALSEGYY----DAVAPTWDHASAPALSYFSPNGSPMGKEE 394
+G IP + N + Y D + H + L + + +
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLS 605
Query: 395 TVQILT------------------SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNL 436
T SM +D+S N L+G IP +IG + + LNL HN++
Sbjct: 606 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 437 TGTIPITFSNLKQIESLDLSYNLLHGKIPQLI-VLTTLAVFRVAYNNLSGKIPDRVAQFS 495
+G+IP +L+ + LDLS N L G+IPQ + LT L ++ NNLSG IP+ + QF
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFE 724
Query: 496 TFEEDSYEGNPFLYGQPLSKSCD 518
TF + NP L G PL + CD
Sbjct: 725 TFPPAKFLNNPGLCGYPLPR-CD 746
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 128/462 (27%), Positives = 188/462 (40%), Gaps = 84/462 (18%)
Query: 49 ILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXX 108
+L G +L HL I N + + + +L+ L+V+SN + P
Sbjct: 169 VLSDGCGELKHLA---ISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQH 224
Query: 109 XXYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF-- 166
I N LSG ++ T L++L++S NQ I P + L S++ L L+ N F
Sbjct: 225 LD-ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSLAENKFTG 280
Query: 167 QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFP-----K 221
+IP L G + L Y ++ P F S+ S F
Sbjct: 281 EIPDFLS-----GACDTLTG-LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 222 FLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHI-PVEIGTYLPG 280
L LK DLS SGE P L + L TLD+S+N F G I P
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSA--SLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 281 LMHLNLSRNAFND----------------LSYNRLQGSIPNWIDRLPQISYLLLANNYIE 324
L L L N F LS+N L G+IP+ + L ++ L L N +E
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 325 GEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFS 384
GEIP +L +K + + L N+L+G IP L N
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-------------------------- 486
Query: 385 PNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITF 444
T+++ I LS N+LTGEIP IG L + L LS+N+ +G IP
Sbjct: 487 ---------------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 445 SNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGK 486
+ + + LDL+ NL +G IP + + ++A N ++GK
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQS---GKIAANFIAGK 570
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 127/298 (42%), Gaps = 67/298 (22%)
Query: 222 FLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGL 281
FL L++ D+S LSG+F I +L L++S+N F G IP L L
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSR---AISTCTELKLLNISSNQFVGPIPP---LPLKSL 268
Query: 282 MHLNLSRNAFN-----------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIE 324
+L+L+ N F DLS N G++P + + L L++N
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 325 GEIPAQ-LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYF 383
GE+P L +++ ++++DLS N SG +P L N + S
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS---------------------- 366
Query: 384 SPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTR--IRALNLSHNNLTGTIP 441
+LT +DLS N +G I + + ++ L L +N TG IP
Sbjct: 367 --------------LLT----LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 442 ITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFE 498
T SN ++ SL LS+N L G IP L L+ L ++ N L G+IP + T E
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 103/263 (39%), Gaps = 73/263 (27%)
Query: 251 HCLQKLATLDVSNNFFQGHIPVEIGTYL---PGLMHLNLSRNAFN--------------- 292
C L +LD+S N G PV T L GL LN+S N +
Sbjct: 94 KCSASLTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 151
Query: 293 --DLSYNRLQGS-IPNWI--DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNL 347
DLS N + G+ + W+ D ++ +L ++ N I G++ C + +D+S NN
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNF 209
Query: 348 SGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDL 407
S IPF +G +Q L D+
Sbjct: 210 STGIPF------------------------------------LGDCSALQHL------DI 227
Query: 408 SCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQL 467
S NKL+G+ I T ++ LN+S N G IP LK ++ L L+ N G+IP
Sbjct: 228 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF 285
Query: 468 I--VLTTLAVFRVAYNNLSGKIP 488
+ TL ++ N+ G +P
Sbjct: 286 LSGACDTLTGLDLSGNHFYGAVP 308
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 24/197 (12%)
Query: 317 LLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHAS 376
L+N++I G + C L DLS N+LSG V T S G + + + S
Sbjct: 80 FLSNSHINGSVSGFKCSASLTSL-DLSRNSLSGP-----VTTLTSLGSCSGLK--FLNVS 131
Query: 377 APALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYL-----TRIRALNL 431
+ L + GK L S+ +DLS N ++G +G++ ++ L +
Sbjct: 132 SNTLDF-------PGKVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAI 182
Query: 432 SHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRV 491
S N ++G + + S +E LD+S N IP L + L ++ N LSG +
Sbjct: 183 SGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI 240
Query: 492 AQFSTFEEDSYEGNPFL 508
+ + + + N F+
Sbjct: 241 STCTELKLLNISSNQFV 257
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 391 GKEETVQILTSMSGIDLSCNKLTGEIP--TQIGYLTRIRALNLSHNNLTGTIPITFS-NL 447
G + S++ +DLS N L+G + T +G + ++ LN+S N L ++ L
Sbjct: 88 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 147
Query: 448 KQIESLDLSYNLLHGKIPQLIVLT----TLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYE 503
+E LDLS N + G VL+ L ++ N +SG + V++ E
Sbjct: 148 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVS 205
Query: 504 GNPFLYGQPLSKSC 517
N F G P C
Sbjct: 206 SNNFSTGIPFLGDC 219
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 155/503 (30%), Positives = 227/503 (45%), Gaps = 62/503 (12%)
Query: 57 LVHLQELYIRDN----DLRDSLLGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXXXXYI 112
L LQ L + +N ++ D L GA T L L+++ N P +
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDT--LTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 113 DNNDLSGSLPL-CLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPIS 171
+N+ SG LP+ L + L+VLD+S+N+ + + S L S+ L LS+N+F PI
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI- 384
Query: 172 LEPLSNLSK-LKAFNGEIYLETESHYNSLTPKF----QLTSISLSGYRDDGTFPKFLYHQ 226
L NL + K E+YL+ + P +L S+ LS GT P L
Sbjct: 385 ---LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNL 286
L++ L L GE P LM + L+ TL + N G IP + L +LN
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLE---TLILDFNDLTGEIP----SGLSNCTNLN- 493
Query: 287 SRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNN 346
+ LS NRL G IP WI RL ++ L L+NN G IPA+L + + +DL+ N
Sbjct: 494 ----WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 347 LSGHIPFCL--------VNTALSEGYY----DAVAPTWDHASAPALSYFSPNGSPMGKEE 394
+G IP + N + Y D + H + L + + +
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLS 608
Query: 395 TVQILT------------------SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNL 436
T SM +D+S N L+G IP +IG + + LNL HN++
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 437 TGTIPITFSNLKQIESLDLSYNLLHGKIPQLI-VLTTLAVFRVAYNNLSGKIPDRVAQFS 495
+G+IP +L+ + LDLS N L G+IPQ + LT L ++ NNLSG IP+ + QF
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFE 727
Query: 496 TFEEDSYEGNPFLYGQPLSKSCD 518
TF + NP L G PL + CD
Sbjct: 728 TFPPAKFLNNPGLCGYPLPR-CD 749
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 128/462 (27%), Positives = 188/462 (40%), Gaps = 84/462 (18%)
Query: 49 ILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXX 108
+L G +L HL I N + + + +L+ L+V+SN + P
Sbjct: 172 VLSDGCGELKHLA---ISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQH 227
Query: 109 XXYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF-- 166
I N LSG ++ T L++L++S NQ I P + L S++ L L+ N F
Sbjct: 228 LD-ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSLAENKFTG 283
Query: 167 QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFP-----K 221
+IP L G + L Y ++ P F S+ S F
Sbjct: 284 EIPDFLS-----GACDTLTG-LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 222 FLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHI-PVEIGTYLPG 280
L LK DLS SGE P L + L TLD+S+N F G I P
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLS--ASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 281 LMHLNLSRNAFND----------------LSYNRLQGSIPNWIDRLPQISYLLLANNYIE 324
L L L N F LS+N L G+IP+ + L ++ L L N +E
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 325 GEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFS 384
GEIP +L +K + + L N+L+G IP L N
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-------------------------- 489
Query: 385 PNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITF 444
T+++ I LS N+LTGEIP IG L + L LS+N+ +G IP
Sbjct: 490 ---------------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 445 SNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGK 486
+ + + LDL+ NL +G IP + + ++A N ++GK
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQS---GKIAANFIAGK 573
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 127/298 (42%), Gaps = 67/298 (22%)
Query: 222 FLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGL 281
FL L++ D+S LSG+F I +L L++S+N F G IP L L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSR---AISTCTELKLLNISSNQFVGPIPP---LPLKSL 271
Query: 282 MHLNLSRNAFN-----------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIE 324
+L+L+ N F DLS N G++P + + L L++N
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 325 GEIPAQ-LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYF 383
GE+P L +++ ++++DLS N SG +P L N + S
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS---------------------- 369
Query: 384 SPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTR--IRALNLSHNNLTGTIP 441
+LT +DLS N +G I + + ++ L L +N TG IP
Sbjct: 370 --------------LLT----LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 442 ITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFE 498
T SN ++ SL LS+N L G IP L L+ L ++ N L G+IP + T E
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 103/263 (39%), Gaps = 73/263 (27%)
Query: 251 HCLQKLATLDVSNNFFQGHIPVEIGTYL---PGLMHLNLSRNAFN--------------- 292
C L +LD+S N G PV T L GL LN+S N +
Sbjct: 97 KCSASLTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 293 --DLSYNRLQGS-IPNWI--DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNL 347
DLS N + G+ + W+ D ++ +L ++ N I G++ C + +D+S NN
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNF 212
Query: 348 SGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDL 407
S IPF +G +Q L D+
Sbjct: 213 STGIPF------------------------------------LGDCSALQHL------DI 230
Query: 408 SCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQL 467
S NKL+G+ I T ++ LN+S N G IP LK ++ L L+ N G+IP
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF 288
Query: 468 I--VLTTLAVFRVAYNNLSGKIP 488
+ TL ++ N+ G +P
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVP 311
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 24/201 (11%)
Query: 317 LLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHAS 376
L+N++I G + C L DLS N+LSG V T S G + + + S
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSL-DLSRNSLSGP-----VTTLTSLGSCSGLK--FLNVS 134
Query: 377 APALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYL-----TRIRALNL 431
+ L + GK L S+ +DLS N ++G +G++ ++ L +
Sbjct: 135 SNTLDF-------PGKVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAI 185
Query: 432 SHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRV 491
S N ++G + + S +E LD+S N IP L + L ++ N LSG +
Sbjct: 186 SGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI 243
Query: 492 AQFSTFEEDSYEGNPFLYGQP 512
+ + + + N F+ P
Sbjct: 244 STCTELKLLNISSNQFVGPIP 264
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 391 GKEETVQILTSMSGIDLSCNKLTGEIP--TQIGYLTRIRALNLSHNNLTGTIPITFS-NL 447
G + S++ +DLS N L+G + T +G + ++ LN+S N L ++ L
Sbjct: 91 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150
Query: 448 KQIESLDLSYNLLHGKIPQLIVLT----TLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYE 503
+E LDLS N + G VL+ L ++ N +SG + V++ E
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVS 208
Query: 504 GNPFLYGQPLSKSC 517
N F G P C
Sbjct: 209 SNNFSTGIPFLGDC 222
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 101/265 (38%), Gaps = 90/265 (33%)
Query: 297 NRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLV 356
N L G IP I +L Q+ YL + + + G IP L Q+K + +D S+N LSG +P
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP---- 142
Query: 357 NTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEI 416
++ L ++ GI N+++G I
Sbjct: 143 -------------------------------------PSISSLPNLVGITFDGNRISGAI 165
Query: 417 PTQIGYLTRI-RALNLSHNNLTGTIPITFSNL---------------------------- 447
P G +++ ++ +S N LTG IP TF+NL
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 448 ------------------KQIESLDLSYNLLHGKIPQ-LIVLTTLAVFRVAYNNLSGKIP 488
K + LDL N ++G +PQ L L L V++NNL G+IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 489 DRVAQFSTFEEDSYEGNPFLYGQPL 513
+ F+ +Y N L G PL
Sbjct: 286 -QGGNLQRFDVSAYANNKCLCGSPL 309
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 109/265 (41%), Gaps = 49/265 (18%)
Query: 225 HQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLM-- 282
+ + N DLS LNL +P +P LA L N + G I +G P +
Sbjct: 48 QTYRVNNLDLSGLNLPKPYP---IP----SSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100
Query: 283 ---------HLNLSRNAFN-----------DLSYNRLQGSIPNWIDRLPQISYLLLANNY 322
H N+S + D SYN L G++P I LP + + N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 323 IEGEIPAQLCQLKEV-RLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALS 381
I G IP ++ + +S N L+G IP N L+ + ++ A L
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA---FVDLSRNMLEGDASVL- 216
Query: 382 YFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP 441
G ++ Q I L+ N L ++ ++G + L+L +N + GT+P
Sbjct: 217 --------FGSDKNTQ------KIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 442 ITFSNLKQIESLDLSYNLLHGKIPQ 466
+ LK + SL++S+N L G+IPQ
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 98/243 (40%), Gaps = 65/243 (26%)
Query: 111 YIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPI 170
YI + ++SG++P L+ + +L LD SYN L+ + +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-----------------------LPP 143
Query: 171 SLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLK 230
S+ L NL + I Y S + F TS+++S R
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLF--TSMTISRNR---------------- 185
Query: 231 NADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290
L+G+ P P LA +D+S N +G V G+ ++L++N+
Sbjct: 186 --------LTGKIP----PTFANLNLAFVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNS 232
Query: 291 FN-DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG 349
DL L ++ N +D L NN I G +P L QLK + +++S NNL G
Sbjct: 233 LAFDLGKVGLSKNL-NGLD---------LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 350 HIP 352
IP
Sbjct: 283 EIP 285
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 100/247 (40%), Gaps = 40/247 (16%)
Query: 124 CLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKA 183
L+ LTSLQ L+ S NQ+T+ PL LT++E L +S+N L L+NL L A
Sbjct: 146 ALSGLTSLQQLNFSSNQVTD---LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 184 FNGEIYLETESHYNSLTPKFQLTSISLSG--YRDDGTFPKFLYHQHDLKNADLSHLNLSG 241
N +I S L L +SL+G +D GT +L+ L+L+
Sbjct: 203 TNNQI-----SDITPLGILTNLDELSLNGNQLKDIGTLASL---------TNLTDLDLAN 248
Query: 242 EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS------ 295
+ L P+ L KL L + N P+ L L +L L+ N D+S
Sbjct: 249 NQISNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLEDISPISNLK 305
Query: 296 --------YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNL 347
+N + P + L ++ L NN + + L L + + HN +
Sbjct: 306 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 361
Query: 348 SGHIPFC 354
S P
Sbjct: 362 SDLTPLA 368
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 148/343 (43%), Gaps = 41/343 (11%)
Query: 128 LTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGE 187
L +L ++ S NQLT+ +PL LT + +++++NN L L+NL+ L FN +
Sbjct: 62 LNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 188 IY----LETESHYNSLT-PKFQLTSIS-LSGYRDDGTFPKFLYHQHDLKN-ADLSHLNLS 240
I L+ ++ N L ++ IS LSG DLK A+L+ L
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERL 178
Query: 241 GEFPNWLMPIHCLQKLATLD---VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYN 297
N + I L KL L+ +NN P+ I L L L+L+ N D+
Sbjct: 179 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDIGT- 234
Query: 298 RLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPF--- 353
+ L ++ L LANN I P + L +L E++ L N +S P
Sbjct: 235 ---------LASLTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISPLAGL 282
Query: 354 -CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL 412
L N L+E + ++P + + L+ + N S + V LT + + NK+
Sbjct: 283 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKV 339
Query: 413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDL 455
+ + + LT I L+ HN ++ P+ +NL +I L L
Sbjct: 340 SDV--SSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGL 378
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 150/350 (42%), Gaps = 56/350 (16%)
Query: 128 LTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGE 187
L +L ++ S NQLT+ +PL LT + +++++NN L L+NL+ L FN +
Sbjct: 62 LNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 188 I-------------YLETESH-YNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNAD 233
I LE S+ + ++ LTS+ + + T K L + L+ D
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLD 178
Query: 234 LSHLNLSGEFPNWLMPIHCLQKLATLD---VSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290
+S N + I L KL L+ +NN P+ I L L L+L+ N
Sbjct: 179 ISS--------NKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQ 227
Query: 291 FNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSG 349
D+ + L ++ L LANN I P + L +L E++ L N +S
Sbjct: 228 LKDIGT----------LASLTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISN 274
Query: 350 HIPF----CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
P L N L+E + ++P + + L+ + N S + V LT + +
Sbjct: 275 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL 331
Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDL 455
S NK++ + + LT I L+ HN ++ P+ +NL +I L L
Sbjct: 332 FFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGL 377
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 58/244 (23%)
Query: 125 LTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAF 184
L NLT+L+ LD+S N++++ S L LT++E LI +NN L L+NL +L +
Sbjct: 168 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTNLDEL-SL 223
Query: 185 NGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFP 244
NG QL +D GT +L+ L+L+
Sbjct: 224 NGN----------------QL--------KDIGTLASL---------TNLTDLDLANNQI 250
Query: 245 NWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS--------- 295
+ L P+ L KL L + N P+ L L +L L+ N D+S
Sbjct: 251 SNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLEDISPISNLKNLT 307
Query: 296 -----YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGH 350
+N + P + L ++ L +NN + + L L + + HN +S
Sbjct: 308 YLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDL 363
Query: 351 IPFC 354
P
Sbjct: 364 TPLA 367
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 56/350 (16%)
Query: 128 LTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGE 187
L +L ++ S NQLT+ +PL LT + +++++NN L L+NL+ L FN +
Sbjct: 66 LNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 122
Query: 188 I-------------YLETESH-YNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNAD 233
I LE S+ + ++ LTS+ + + T K L + L+ D
Sbjct: 123 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 182
Query: 234 LSHLNLSGEFPNWLMPIHCLQKLATLD---VSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290
+S N + I L KL L+ +NN P+ I L L L+L+ N
Sbjct: 183 ISS--------NKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQ 231
Query: 291 FNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSG 349
D+ + L ++ L LANN I P + L +L E++ L N +S
Sbjct: 232 LKDIGT----------LASLTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISN 278
Query: 350 HIPF----CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
P L N L+E + ++P + + L+ + N S + V LT + +
Sbjct: 279 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL 335
Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDL 455
+ NK++ + + LT I L+ HN ++ P+ +NL +I L L
Sbjct: 336 FFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGL 381
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 102/265 (38%), Gaps = 61/265 (23%)
Query: 125 LTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAF 184
L NLT+L+ LD+S N++++ S L LT++E LI +NN L L+NL +L +
Sbjct: 172 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTNLDEL-SL 227
Query: 185 NGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFP 244
NG QL +D GT +L+ L+L+
Sbjct: 228 NGN----------------QL--------KDIGTLASL---------TNLTDLDLANNQI 254
Query: 245 NWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS--------- 295
+ L P+ L KL L + N P+ L L +L L+ N D+S
Sbjct: 255 SNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLEDISPISNLKNLT 311
Query: 296 -----YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGH 350
+N + P + L ++ L ANN + + L L + + HN +S
Sbjct: 312 YLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDL 367
Query: 351 IPFCLVNTALSEGYYDAVAPTWDHA 375
P + G D W +A
Sbjct: 368 TPLANLTRITQLGLNDQA---WTNA 389
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 149/343 (43%), Gaps = 41/343 (11%)
Query: 128 LTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGE 187
L +L ++ S NQLT+ +PL LT + +++++NN L L+NL+ L FN +
Sbjct: 62 LNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 188 IY----LETESHYNSLT-PKFQLTSIS-LSGYRDDGTFPKFLYHQHDLKN-ADLSHLNLS 240
I L+ ++ N L ++ IS LSG DLK A+L+ L
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERL 178
Query: 241 GEFPNWLMPIHCLQKLATLD---VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYN 297
N + I L KL L+ +NN P+ I L L L+L+ N D+
Sbjct: 179 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDIGT- 234
Query: 298 RLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPF--- 353
+ L ++ L LANN I P + L +L E++ L N +S P
Sbjct: 235 ---------LASLTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISPLAGL 282
Query: 354 -CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL 412
L N L+E + ++P + + L+ + N S + V LT + + S NK+
Sbjct: 283 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKV 339
Query: 413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDL 455
+ + + LT I L+ HN ++ P+ +NL +I L L
Sbjct: 340 SDV--SSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGL 378
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 120/313 (38%), Gaps = 87/313 (27%)
Query: 57 LVHLQELYIRDNDLRD-SLLGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXXXXYIDNN 115
L +L L + N + D S L TSLQ+L+ +SN++T P
Sbjct: 128 LTNLNRLELSSNTISDISALSGL--TSLQQLSFSSNQVTDLKP----------------- 168
Query: 116 DLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPL 175
L NLT+L+ LD+S N++++ S L LT++E LI +NN L L
Sbjct: 169 ---------LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGIL 216
Query: 176 SNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLS 235
+NL +L + NG QL +D GT +L+
Sbjct: 217 TNLDEL-SLNGN----------------QL--------KDIGTLASL---------TNLT 242
Query: 236 HLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS 295
L+L+ + L P+ L KL L + N P+ L L +L L+ N D+S
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLEDIS 299
Query: 296 --------------YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLID 341
+N + P + L ++ L +NN + + L L + +
Sbjct: 300 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLS 355
Query: 342 LSHNNLSGHIPFC 354
HN +S P
Sbjct: 356 AGHNQISDLTPLA 368
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Query: 52 QGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLTRNFPXXXXXXXXXXXX 110
+ F +L L+ LY+ DN L+ G ++ +L+ L V NKL
Sbjct: 55 KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114
Query: 111 YIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-IP 169
+D N L P +LT L L + YN+L +S+ LTS++EL L NN + +P
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVP 173
Query: 170 I-SLEPLSNLSKLKAFNGEIYLETESHYNSL 199
+ + L+ L LK N ++ E ++SL
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 29/133 (21%)
Query: 253 LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDL----------------SY 296
L+ L TL V++N Q +P+ + L L L L RN L Y
Sbjct: 84 LKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 297 NRLQGSIPNWI-DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCL 355
N LQ S+P + D+L + L L NN ++ +L E++ + L +N L +P
Sbjct: 143 NELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP--- 197
Query: 356 VNTALSEGYYDAV 368
EG +D++
Sbjct: 198 ------EGAFDSL 204
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
I +DL NKL+ LT++R L L+ N L F LK +E+L ++
Sbjct: 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94
Query: 458 NLLHG-KIPQLIVLTTLAVFRVAYNNLSGKIPDRV 491
N L I L LA R+ N L +P RV
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRV 128
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 149/350 (42%), Gaps = 56/350 (16%)
Query: 128 LTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGE 187
L +L ++ S NQLT+ +PL LT + +++++NN L L+NL+ L FN +
Sbjct: 67 LNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 123
Query: 188 I-------------YLETESH-YNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNAD 233
I LE S+ + ++ LTS+ + + T K L + L+ D
Sbjct: 124 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183
Query: 234 LSHLNLSGEFPNWLMPIHCLQKLATLD---VSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290
+S N + I L KL L+ +NN P+ I L L L+L+ N
Sbjct: 184 ISS--------NKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQ 232
Query: 291 FNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSG 349
D+ + L ++ L LANN I P + L +L E++ L N +S
Sbjct: 233 LKDIGT----------LASLTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISN 279
Query: 350 HIPF----CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
P L N L+E + ++P + + L+ + N S + V LT + +
Sbjct: 280 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL 336
Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDL 455
NK++ + + LT I L+ HN ++ P+ +NL +I L L
Sbjct: 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGL 382
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 58/244 (23%)
Query: 125 LTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAF 184
L NLT+L+ LD+S N++++ S L LT++E LI +NN L L+NL +L +
Sbjct: 173 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTNLDEL-SL 228
Query: 185 NGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFP 244
NG QL +D GT +L+ L+L+
Sbjct: 229 NGN----------------QL--------KDIGTLASL---------TNLTDLDLANNQI 255
Query: 245 NWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS--------- 295
+ L P+ L KL L + N P+ L L +L L+ N D+S
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLEDISPISNLKNLT 312
Query: 296 -----YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGH 350
+N + P + L ++ L NN + + L L + + HN +S
Sbjct: 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 368
Query: 351 IPFC 354
P
Sbjct: 369 TPLA 372
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 150/351 (42%), Gaps = 56/351 (15%)
Query: 128 LTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGE 187
L +L ++ S NQLT+ +PL LT + +++++NN L L+NL+ L FN +
Sbjct: 62 LNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 188 I-------------YLETESH-YNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNAD 233
I LE S+ + ++ LTS+ + + T K L + L+ D
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLD 178
Query: 234 LSHLNLSGEFPNWLMPIHCLQKLATLD---VSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290
+S N + I L KL L+ +NN P+ I L L L+L+ N
Sbjct: 179 ISS--------NKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQ 227
Query: 291 FNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSG 349
D+ + L ++ L LANN I P + L +L E++ L N +S
Sbjct: 228 LKDIGT----------LASLTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISN 274
Query: 350 HIPF----CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405
P L N L+E + ++P + + L+ + N S + V LT + +
Sbjct: 275 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL 331
Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLS 456
NK++ + + LT I L+ HN ++ P+ +NL +I L L+
Sbjct: 332 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLN 378
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 58/244 (23%)
Query: 125 LTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAF 184
L NLT+L+ LD+S N++++ S L LT++E LI +NN L L+NL +L +
Sbjct: 168 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTNLDEL-SL 223
Query: 185 NGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFP 244
NG QL +D GT +L+ L+L+
Sbjct: 224 NGN----------------QL--------KDIGTLASL---------TNLTDLDLANNQI 250
Query: 245 NWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS--------- 295
+ L P+ L KL L + N P+ L L +L L+ N D+S
Sbjct: 251 SNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLEDISPISNLKNLT 307
Query: 296 -----YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGH 350
+N + P + L ++ L NN + + L L + + HN +S
Sbjct: 308 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 363
Query: 351 IPFC 354
P
Sbjct: 364 TPLA 367
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 148/343 (43%), Gaps = 41/343 (11%)
Query: 128 LTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGE 187
L +L ++ S NQLT+ +PL LT + +++++NN L L+NL+ L FN +
Sbjct: 62 LNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 188 IY----LETESHYNSLT-PKFQLTSIS-LSGYRDDGTFPKFLYHQHDLKN-ADLSHLNLS 240
I L+ ++ N L ++ IS LSG DLK A+L+ L
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERL 178
Query: 241 GEFPNWLMPIHCLQKLATLD---VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYN 297
N + I L KL L+ +NN P+ I L L L+L+ N D+
Sbjct: 179 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDIGT- 234
Query: 298 RLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPF--- 353
+ L ++ L LANN I P + L +L E++ L N +S P
Sbjct: 235 ---------LASLTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISPLAGL 282
Query: 354 -CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL 412
L N L+E + ++P + + L+ + N S + V LT + + NK+
Sbjct: 283 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKV 339
Query: 413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDL 455
+ + + LT I L+ HN ++ P+ +NL +I L L
Sbjct: 340 SDV--SSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGL 378
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 119/313 (38%), Gaps = 87/313 (27%)
Query: 57 LVHLQELYIRDNDLRD-SLLGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXXXXYIDNN 115
L +L L + N + D S L TSLQ+L+ +SN++T P
Sbjct: 128 LTNLNRLELSSNTISDISALSGL--TSLQQLSFSSNQVTDLKP----------------- 168
Query: 116 DLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPL 175
L NLT+L+ LD+S N++++ S L LT++E LI +NN L L
Sbjct: 169 ---------LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGIL 216
Query: 176 SNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLS 235
+NL +L + NG QL +D GT +L+
Sbjct: 217 TNLDEL-SLNGN----------------QL--------KDIGTLASL---------TNLT 242
Query: 236 HLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS 295
L+L+ + L P+ L KL L + N P+ L L +L L+ N D+S
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLEDIS 299
Query: 296 --------------YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLID 341
+N + P + L ++ L NN + + L L + +
Sbjct: 300 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 355
Query: 342 LSHNNLSGHIPFC 354
HN +S P
Sbjct: 356 AGHNQISDLTPLA 368
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 150/346 (43%), Gaps = 62/346 (17%)
Query: 145 ISSSPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKF 203
+SSS T ++EL L+ H +P +E +++L KL N NS
Sbjct: 268 LSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKL-VLNA----------NSFDQLC 316
Query: 204 QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLA---TLD 260
Q+ + S RD LY + +++ DL CL+KL LD
Sbjct: 317 QINAASFPSLRD-------LYIKGNMRKLDLG--------------TRCLEKLENLQKLD 355
Query: 261 VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLAN 320
+S++ + + L L HL + +LSYN G PQ+ L +A
Sbjct: 356 LSHSDIEASDCCNL--QLKNLRHL-----QYLNLSYNEPLGLEDQAFKECPQLELLDVAF 408
Query: 321 NYIEGEIPAQLCQ-LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPA 379
++ + P Q L +R+++LSH CL++T S + A H +
Sbjct: 409 THLHVKAPHSPFQNLHLLRVLNLSH---------CLLDT--SNQHLLAGLQDLRHLNLQG 457
Query: 380 LSYFSPNGSPMGKEETVQILTSMSGIDLS-CNKLTGEIPTQIGYLTRIRALNLSHNNLTG 438
S+ +GS + K +Q++ S+ + LS CN L+ + G L + L+LSHN+LTG
Sbjct: 458 NSF--QDGS-ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG-LRNVNHLDLSHNSLTG 513
Query: 439 TIPITFSNLKQIESLDLSYNLLHGKIPQLI-VLTTLAVFRVAYNNL 483
S+LK + L+++ N + P L+ L+ ++ +++N L
Sbjct: 514 DSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
Query: 359 ALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETV---QILTSMSGIDLSCNKLTGE 415
LS ++D + A+ P+L++ G+ V + L ++ +DLS N +
Sbjct: 304 VLSVNHFDQLCQI-SAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS 362
Query: 416 --IPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ--LIVLT 471
Q+ L+ ++ LNLSHN G F Q+E LDL++ LH PQ L
Sbjct: 363 DCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLH 422
Query: 472 TLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYG 510
L V + Y L +A + +GN F G
Sbjct: 423 FLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 163/380 (42%), Gaps = 66/380 (17%)
Query: 112 IDNNDLSGSL--PLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-I 168
ID+ D+S ++ LC ++ SL + + ++ ISS+ T ++EL L+ H + +
Sbjct: 235 IDDEDISSAMLKGLCEMSVESLNLQEHRFS----DISSTTFQCFTQLQELDLTATHLKGL 290
Query: 169 PISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHD 228
P ++ L+ L KL + + +H++ QL IS + FP
Sbjct: 291 PSGMKGLNLLKKL--------VLSVNHFD------QLCQISAAN------FPS------- 323
Query: 229 LKNADLSHLNLSGEFPNWLMPIHCLQKLA---TLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
L+HL + G + + CL+KL TLD+S+N + + L N
Sbjct: 324 -----LTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEA-------SDCCSLQLKN 371
Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ-LKEVRLIDLSH 344
LS +LS+N G PQ+ L LA + P Q L +++++L+
Sbjct: 372 LSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLT- 430
Query: 345 NNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSG 404
+C ++T S + A P H + + + K +Q + S+
Sbjct: 431 --------YCFLDT--SNQHLLAGLPVLRHLNLKGNHF---QDGTITKTNLLQTVGSLEV 477
Query: 405 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI 464
+ LS L L ++ ++LSHN+LT + S+LK I L+L+ N ++
Sbjct: 478 LILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIIS 536
Query: 465 PQLI-VLTTLAVFRVAYNNL 483
P+L+ +L+ + +++N L
Sbjct: 537 PRLLPILSQQSTINLSHNPL 556
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 395 TVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLD 454
T + S D S KLT ++P + T I LNL+HN L F+ Q+ SLD
Sbjct: 4 TTKCTVSHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLD 60
Query: 455 LSYNLLHGKIPQLI-VLTTLAVFRVAYNNLSGKIPDRVAQFST 496
+ +N + P+L L L V + +N LS ++ D+ F T
Sbjct: 61 VGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 102
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 49/208 (23%)
Query: 278 LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEV 337
+P L L L R A ++ S P+ L ++ L L+NN I L L+++
Sbjct: 458 VPSLQRLMLRRVALKNVD------SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 511
Query: 338 RLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQ 397
++DL HNNL A W HA+ YF ++
Sbjct: 512 EILDLQHNNL---------------------ARLWKHANPGGPIYF------------LK 538
Query: 398 ILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLS 456
L+ + ++L N EIP ++ L ++ ++L NNL F+N ++SL+L
Sbjct: 539 GLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 597
Query: 457 YNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
N LI VF A+ NL+
Sbjct: 598 KN--------LITSVEKKVFGPAFRNLT 617
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 395 TVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLD 454
T + S D S KLT ++P + T I LNL+HN L F+ Q+ SLD
Sbjct: 9 TTKCTVSHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLD 65
Query: 455 LSYNLLHGKIPQLI-VLTTLAVFRVAYNNLSGKIPDRVAQFST 496
+ +N + P+L L L V + +N LS ++ D+ F T
Sbjct: 66 VGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 107
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 49/208 (23%)
Query: 278 LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEV 337
+P L L L R A ++ S P+ L ++ L L+NN I L L+++
Sbjct: 463 VPSLQRLMLRRVALKNVD------SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 516
Query: 338 RLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQ 397
++DL HNNL A W HA+ YF ++
Sbjct: 517 EILDLQHNNL---------------------ARLWKHANPGGPIYF------------LK 543
Query: 398 ILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLS 456
L+ + ++L N EIP ++ L ++ ++L NNL F+N ++SL+L
Sbjct: 544 GLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 602
Query: 457 YNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
N LI VF A+ NL+
Sbjct: 603 KN--------LITSVEKKVFGPAFRNLT 622
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP 465
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + P
Sbjct: 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 466 QLI-VLTTLAVFRVAYNNLSGKIPDRVAQFST 496
+L L L V + +N LS ++ D+ F T
Sbjct: 67 ELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 97
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 49/208 (23%)
Query: 278 LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEV 337
+P L L L R A ++ S P+ L ++ L L+NN I L L+++
Sbjct: 453 VPSLQRLMLRRVALKNVD------SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506
Query: 338 RLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQ 397
++DL HNNL A W HA+ YF ++
Sbjct: 507 EILDLQHNNL---------------------ARLWKHANPGGPIYF------------LK 533
Query: 398 ILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLS 456
L+ + ++L N EIP ++ L ++ ++L NNL F+N ++SL+L
Sbjct: 534 GLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592
Query: 457 YNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
N LI VF A+ NL+
Sbjct: 593 KN--------LITSVEKKVFGPAFRNLT 612
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 120 SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI--PISLEPLSN 177
SLPL L +L VLDVS+N+LT S+ L L ++EL L N + P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 178 LSKLKAFNGEI 188
L KL N ++
Sbjct: 150 LEKLSLANNDL 160
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 21/132 (15%)
Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
Q +L +L+ L + G P L TLD+S+N Q +P+ +G LP L L
Sbjct: 59 QLNLDRCELTKLQVDGTLP----------VLGTLDLSHNQLQS-LPL-LGQTLPALTVL- 105
Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
D+S+NRL + L ++ L L N ++ P L ++ + L++N
Sbjct: 106 -------DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 346 NLSGHIPFCLVN 357
+L+ +P L+N
Sbjct: 159 DLT-ELPAGLLN 169
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 120 SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI--PISLEPLSN 177
SLPL L +L VLDVS+N+LT S+ L L ++EL L N + P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 178 LSKLKAFNGEI 188
L KL N ++
Sbjct: 150 LEKLSLANNQL 160
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
Q +L +L+ L + G P L TLD+S+N Q +P+ +G LP L L
Sbjct: 59 QLNLDRCELTKLQVDGTLP----------VLGTLDLSHNQLQS-LPL-LGQTLPALTVL- 105
Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
D+S+NRL + L ++ L L N ++ P L ++ + L++N
Sbjct: 106 -------DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 346 NLSGHIPFCLVN 357
L+ +P L+N
Sbjct: 159 QLT-ELPAGLLN 169
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 120 SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI--PISLEPLSN 177
SLPL L +L VLDVS+N+LT S+ L L ++EL L N + P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 178 LSKLKAFNGEI 188
L KL N ++
Sbjct: 150 LEKLSLANNQL 160
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
Q +L +L+ L + G P L TLD+S+N Q +P+ +G LP L L
Sbjct: 59 QLNLDRCELTKLQVDGTLP----------VLGTLDLSHNQLQS-LPL-LGQTLPALTVL- 105
Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
D+S+NRL + L ++ L L N ++ P L ++ + L++N
Sbjct: 106 -------DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 346 NLSGHIPFCLVN 357
L+ +P L+N
Sbjct: 159 QLT-ELPAGLLN 169
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 406 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP 465
D S KLT IP + + I LNL+HN L P F+ Q+ LD +N + P
Sbjct: 10 DCSHLKLT-HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
Query: 466 QLI-VLTTLAVFRVAYNNLSGKIPDRVAQFST 496
+L +L L V + +N LS +I D+ F T
Sbjct: 67 ELCQILPLLKVLNLQHNELS-QISDQTFVFCT 97
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 69/182 (37%), Gaps = 24/182 (13%)
Query: 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIP 352
DLSYN L LP + YL L N I+ P L +R + L
Sbjct: 254 DLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR-------A 306
Query: 353 FCLVNTALSEGYYDAVAPTWDHASAPALSYFS-----PNGSPMGKEETVQILTSMSGIDL 407
F + +L A P D S L Y N P K T L S+ + L
Sbjct: 307 FTKQSVSL------ASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSL 360
Query: 408 S-----CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG 462
S LT E + + + + LNL+ N+++ TFS L Q+ LDL N +
Sbjct: 361 SKTFTSLQTLTNETFVSLAH-SPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQ 419
Query: 463 KI 464
K+
Sbjct: 420 KL 421
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 120 SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI--PISLEPLSN 177
SLPL L +L VLDVS+N+LT S+ L L ++EL L N + P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 178 LSKLKAFNGEI 188
L KL N ++
Sbjct: 150 LEKLSLANNQL 160
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
Q +L +L+ L + G P L TLD+S+N Q +P+ +G LP L L
Sbjct: 59 QLNLDRCELTKLQVDGTLP----------VLGTLDLSHNQLQS-LPL-LGQTLPALTVL- 105
Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
D+S+NRL + L ++ L L N ++ P L ++ + L++N
Sbjct: 106 -------DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 346 NLSGHIPFCLVN 357
L+ +P L+N
Sbjct: 159 QLT-ELPAGLLN 169
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 120 SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI--PISLEPLSN 177
SLPL L +L VLDVS+N+LT S+ L L ++EL L N + P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 178 LSKLKAFNGEI 188
L KL N ++
Sbjct: 150 LEKLSLANNQL 160
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
Q +L +L+ L + G P L TLD+S+N Q +P+ +G LP L L
Sbjct: 59 QLNLDRCELTKLQVDGTLP----------VLGTLDLSHNQLQS-LPL-LGQTLPALTVL- 105
Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
D+S+NRL + L ++ L L N ++ P L ++ + L++N
Sbjct: 106 -------DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 346 NLSGHIPFCLVN 357
L+ +P L+N
Sbjct: 159 QLT-ELPAGLLN 169
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 21/132 (15%)
Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
Q +L A+L+ L + G P L TLD+S+N Q +P+ +G LP L L
Sbjct: 59 QLNLDRAELTKLQVDGTLP----------VLGTLDLSHNQLQS-LPL-LGQTLPALTVL- 105
Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
D+S+NRL + L ++ L L N ++ P L ++ + L++N
Sbjct: 106 -------DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 346 NLSGHIPFCLVN 357
NL+ +P L+N
Sbjct: 159 NLT-ELPAGLLN 169
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 120 SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI--PISLEPLSN 177
SLPL L +L VLDVS+N+LT S+ L L ++EL L N + P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 178 LSKLKAFNGEI 188
L KL N +
Sbjct: 150 LEKLSLANNNL 160
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 21/132 (15%)
Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
Q +L A+L+ L + G P L TLD+S+N Q +P+ +G LP L L
Sbjct: 59 QLNLDRAELTKLQVDGTLP----------VLGTLDLSHNQLQS-LPL-LGQTLPALTVL- 105
Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
D+S+NRL + L ++ L L N ++ P L ++ + L++N
Sbjct: 106 -------DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 346 NLSGHIPFCLVN 357
NL+ +P L+N
Sbjct: 159 NLT-ELPAGLLN 169
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 120 SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI--PISLEPLSN 177
SLPL L +L VLDVS+N+LT S+ L L ++EL L N + P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 178 LSKLKAFNGEI 188
L KL N +
Sbjct: 150 LEKLSLANNNL 160
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 21/132 (15%)
Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
Q +L A+L+ L + G P L TLD+S+N Q +P+ +G LP L L
Sbjct: 59 QLNLDRAELTKLQVDGTLP----------VLGTLDLSHNQLQS-LPL-LGQTLPALTVL- 105
Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
D+S+NRL + L ++ L L N ++ P L ++ + L++N
Sbjct: 106 -------DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 346 NLSGHIPFCLVN 357
NL+ +P L+N
Sbjct: 159 NLT-ELPAGLLN 169
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 120 SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI--PISLEPLSN 177
SLPL L +L VLDVS+N+LT S+ L L ++EL L N + P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 178 LSKLKAFNGEI 188
L KL N +
Sbjct: 150 LEKLSLANNNL 160
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
Query: 66 RDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXXXXYIDNNDLSGSLPLCL 125
+D+ D L A ++LQ N+++N +F Y++ N L+ LP +
Sbjct: 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEI 266
Query: 126 TNLTSLQVLDVSYNQLT 142
NL++L+VLD+S+N+LT
Sbjct: 267 KNLSNLRVLDLSHNRLT 283
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 313 ISYLLLANNYIEG----EIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYY--D 366
Y L Y+ G E+PA++ L +R++DLSHN L+ +P L + + +Y D
Sbjct: 244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFD 302
Query: 367 AVAPT--WDHASAPALSYFSPNGSPMGKEETVQILT--SMSGIDLSCNKLTGEIP 417
+ T W+ + L + G+P+ K + ++ILT S++G+ EIP
Sbjct: 303 NMVTTLPWEFGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEIP 356
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 25/91 (27%)
Query: 407 LSCNKLTGEIPTQIGYLTRIRALNLSHNNLTG----------------------TIPITF 444
L+ N LT E+P +I L+ +R L+LSHN LT T+P F
Sbjct: 254 LNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF 312
Query: 445 SNLKQIESLDLSYNLLHGKIPQLIVLTTLAV 475
NL ++ L + N L + L +LT +V
Sbjct: 313 GNLCNLQFLGVEGNPLEKQF--LKILTEKSV 341
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 120 SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI--PISLEPLSN 177
SLPL L +L VLDVS+N+LT S+ L L ++EL L N + P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 178 LSKLKAFNGEI 188
L KL N +
Sbjct: 150 LEKLSLANNNL 160
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 21/132 (15%)
Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
Q +L +L+ L + G P L TLD+S+N Q +P+ +G LP L L
Sbjct: 59 QLNLDRCELTKLQVDGTLP----------VLGTLDLSHNQLQS-LPL-LGQTLPALTVL- 105
Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
D+S+NRL + L ++ L L N ++ P L ++ + L++N
Sbjct: 106 -------DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 346 NLSGHIPFCLVN 357
NL+ +P L+N
Sbjct: 159 NLT-ELPAGLLN 169
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 120 SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI--PISLEPLSN 177
SLPL L +L VLDVS+N+LT S+ L L ++EL L N + P L P
Sbjct: 92 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 150
Query: 178 LSKLKAFNGEI 188
L KL N +
Sbjct: 151 LEKLSLANNNL 161
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 21/132 (15%)
Query: 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285
Q +L +L+ L + G P L TLD+S+N Q +P+ +G LP L L
Sbjct: 60 QLNLDRCELTKLQVDGTLP----------VLGTLDLSHNQLQS-LPL-LGQTLPALTVL- 106
Query: 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345
D+S+NRL + L ++ L L N ++ P L ++ + L++N
Sbjct: 107 -------DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Query: 346 NLSGHIPFCLVN 357
NL+ +P L+N
Sbjct: 160 NLT-ELPAGLLN 170
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 95/243 (39%), Gaps = 51/243 (20%)
Query: 113 DNNDLSGSLPLCLTNLTSLQVLDVSYNQ----LTESISSSPLMLLTSIEELILSNNHFQI 168
D+ + S L L NL+ LQ L++SYN+ TE+ P +E L L+ ++
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP-----QLELLDLAFTRLKV 414
Query: 169 PISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHD 228
+ P NL LK N S SL + F
Sbjct: 415 KDAQSPFQNLHLLKVLN--------------------LSHSLLDISSEQLFDGL------ 448
Query: 229 LKNADLSHLNLSG-EFPNW-LMPIHCLQKLATLDVSNNFFQ--GHIPVEIGTYLPGLMHL 284
L HLNL G FP + + LQ L L++ F I T L + H+
Sbjct: 449 ---PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505
Query: 285 NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSH 344
DLS+NRL S + L I YL LA+N+I +P+ L L + R I+L
Sbjct: 506 --------DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556
Query: 345 NNL 347
N L
Sbjct: 557 NPL 559
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 110/278 (39%), Gaps = 50/278 (17%)
Query: 81 TSLQELNVASNKLTRNFPXXXXXXXXXXXXYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140
+ LQEL++ + L+ P + N + +N SL L + N
Sbjct: 278 SGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336
Query: 141 LTESISSSPLMLLTSIEELILSNNHFQIP----ISLEPLSNLSKLK-AFNGEIYLETESH 195
+ + L L ++ EL LS++ + + L LS+L L ++N + L+TE+
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396
Query: 196 YNSLTPKFQLTSISLSGYR-DDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQ 254
P+ +L ++ + + D P + H LK +LSH
Sbjct: 397 KE--CPQLELLDLAFTRLKVKDAQSP--FQNLHLLKVLNLSH------------------ 434
Query: 255 KLATLDVSN-NFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSI--PNWIDRLP 311
+ LD+S+ F G LP L HLNL N F +G+I N + L
Sbjct: 435 --SLLDISSEQLFDG---------LPALQHLNLQGNHFP-------KGNIQKTNSLQTLG 476
Query: 312 QISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG 349
++ L+L+ + LK + +DLSHN L+
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 423 LTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIV--LTTLAVFRVAY 480
LT + LNL+HN L F L + LDLSYN L +P+ + LT L R+
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQ 190
Query: 481 NNLSGKIPDRV 491
N L +PD V
Sbjct: 191 NQLKS-VPDGV 200
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 72/190 (37%), Gaps = 57/190 (30%)
Query: 277 YLPGLMHLNLSRNAFNDLSY--------------NRLQGSIPNWI-DRLPQISYLLLANN 321
YLP + +L L N +D+S N+LQ S+PN + D+L + L+L N
Sbjct: 61 YLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVEN 119
Query: 322 YIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALS 381
++ +L + ++L+HN L +L +G +D
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQ----------SLPKGVFDK-------------- 155
Query: 382 YFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP 441
LT+++ +DLS N+L LT+++ L L N L
Sbjct: 156 -----------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 442 ITFSNLKQIE 451
F L ++
Sbjct: 199 GVFDRLTSLQ 208
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 425 RIRALNLSHNNLTGTIPI--TFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNN 482
+I+ + + +NNL T P+ + K++ L+ YN L GK+P LA +AYN
Sbjct: 306 KIQIIYIGYNNLK-TFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364
Query: 483 LSGKIPDRVAQFSTFEE 499
++ +IP A F F E
Sbjct: 365 IT-EIP---ANFCGFTE 377
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 71 RDSLLGAWQTTSLQELNVASNKLTRNFPXXXXXXXXXXXXYIDNNDLSGSLPL-CLTNLT 129
R + + A T+ Q L + N++T+ P Y+ +N L G+LP+ +LT
Sbjct: 30 RHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 130 SLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF-QIPISLEPLSNLSKL 181
L VLD+ NQLT + S+ L ++EL + N ++P +E L++L+ L
Sbjct: 89 QLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHL 140
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 384 SPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPIT 443
S N P G E V+ +DLS N++T + + ++AL L+ N + +
Sbjct: 42 SLNSIPSGLTEAVK------SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95
Query: 444 FSNLKQIESLDLSYNLL 460
FS+L +E LDLSYN L
Sbjct: 96 FSSLGSLEHLDLSYNYL 112
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 384 SPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPIT 443
S N P G E V+ +DLS N++T + + ++AL L+ N + +
Sbjct: 16 SLNSIPSGLTEAVK------SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 69
Query: 444 FSNLKQIESLDLSYNLL 460
FS+L +E LDLSYN L
Sbjct: 70 FSSLGSLEHLDLSYNYL 86
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 420 IGYLTRIRALNLSHNNLTG-TIPITFSNLKQIESLDLSYN 458
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
L +++ +DLS +L PT L+ ++ LN+SHNN + L ++ LD S N
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 48 TILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLT--RNFPXXXXXX 104
TI D + L HL L + N ++ LGA+ +SLQ+L L NFP
Sbjct: 90 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149
Query: 105 XXXXXXYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLL 153
N S LP +NLT+L+ LD+S N++ +SI + L +L
Sbjct: 150 LKELNV-AHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVL 196
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 81 TSLQELNVASNKLTRNF-PXXXXXXXXXXXXYIDNNDLSGSLPLCLTNLTSLQVLDVSYN 139
+SL+ L +A N NF P + L P +L+SLQVL++S+N
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Query: 140 QLTESISSSPLMLLTSIEELILSNNH 165
S+ + P L S++ L S NH
Sbjct: 529 NFF-SLDTFPYKCLNSLQVLDYSLNH 553
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 420 IGYLTRIRALNLSHNNLTG-TIPITFSNLKQIESLDLSYN 458
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 16/190 (8%)
Query: 278 LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEV 337
LP L L+LSRN + +G + YL L+ N + + + L+++
Sbjct: 346 LPSLEFLDLSRNGLS------FKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQL 398
Query: 338 RLIDLSHNNLSGHIPFCLVNTALSEGYYD------AVAPTWDHASAPALSYFSPNGSPMG 391
+D H+NL F + + + Y D VA +L G+
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458
Query: 392 KEETVQILTSMSGI---DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLK 448
+ I T + + DLS +L PT L+ ++ LN+SHNN + L
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518
Query: 449 QIESLDLSYN 458
++ LD S N
Sbjct: 519 SLQVLDYSLN 528
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 81 TSLQELNVASNKLTRNF-PXXXXXXXXXXXXYIDNNDLSGSLPLCLTNLTSLQVLDVSYN 139
+SL+ L +A N NF P + L P +L+SLQVL++S+N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 140 QLTESISSSPLMLLTSIEELILSNNH 165
S+ + P L S++ L S NH
Sbjct: 505 NFF-SLDTFPYKCLNSLQVLDYSLNH 529
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 420 IGYLTRIRALNLSHNNLTG-TIPITFSNLKQIESLDLSYN 458
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 48 TILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLT--RNFPXXXXXX 104
TI D + L HL L + N ++ LGA+ +SLQ+L L NFP
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 105 XXXXXXYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLL 153
N S LP +NLT+L+ LD+S N++ +SI + L +L
Sbjct: 126 LKELN-VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVL 172
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 125 LTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAF 184
L L++LQVL + NQ+T + SPL LT+++ L + NN L PL+NLSKL
Sbjct: 131 LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTL 184
Query: 185 NGE 187
+
Sbjct: 185 RAD 187
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 420 IGYLTRIRALNLSHNNLTG-TIPITFSNLKQIESLDLSYN 458
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 48 TILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLT--RNFPXXXXXX 104
TI D + L HL L + N ++ LGA+ +SLQ+L L NFP
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 127
Query: 105 XXXXXXYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLL 153
N S LP +NLT+L+ LD+S N++ +SI + L +L
Sbjct: 128 LKELN-VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVL 174
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 420 IGYLTRIRALNLSHNNLTG-TIPITFSNLKQIESLDLSYN 458
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 48 TILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLT--RNFPXXXXXX 104
TI D + L HL L + N ++ LGA+ +SLQ+L L NFP
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 126
Query: 105 XXXXXXYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLL 153
N S LP +NLT+L+ LD+S N++ +SI + L +L
Sbjct: 127 LKELN-VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVL 173
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 420 IGYLTRIRALNLSHNNLTG-TIPITFSNLKQIESLDLSYN 458
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 48 TILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLT--RNFPXXXXXX 104
TI D + L HL L + N ++ LGA+ +SLQ+L L NFP
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 126
Query: 105 XXXXXXYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLL 153
N S LP +NLT+L+ LD+S N++ +SI + L +L
Sbjct: 127 LKELN-VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVL 173
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 420 IGYLTRIRALNLSHNNLTG-TIPITFSNLKQIESLDLSYN 458
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 48 TILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLT--RNFPXXXXXX 104
TI D + L HL L + N ++ LGA+ +SLQ+L L NFP
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKT 127
Query: 105 XXXXXXYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLL 153
N S LP +NLT+L+ LD+S N++ +SI + L +L
Sbjct: 128 LKELN-VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVL 174
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 383 FSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNL-TGTIP 441
FSP GS G LTS+ + KL IG L ++ LN++HN + + +P
Sbjct: 90 FSP-GSFSG-------LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 141
Query: 442 ITFSNLKQIESLDLSYN 458
FSNL + +DLSYN
Sbjct: 142 AYFSNLTNLVHVDLSYN 158
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 420 IGYLTRIRALNLSHNNLTG-TIPITFSNLKQIESLDLSYN 458
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 48 TILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLT--RNFPXXXXXX 104
TI D + L HL L + N ++ LGA+ +SLQ+L L NFP
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 105 XXXXXXYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLL 153
N S LP +NLT+L+ LD+S N++ +SI + L +L
Sbjct: 126 LKELNV-AHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVL 172
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 383 FSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNL-TGTIP 441
FSP GS G LTS+ + KL IG L ++ LN++HN + + +P
Sbjct: 95 FSP-GSFSG-------LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146
Query: 442 ITFSNLKQIESLDLSYN 458
FSNL + +DLSYN
Sbjct: 147 AYFSNLTNLVHVDLSYN 163
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 81/208 (38%), Gaps = 31/208 (14%)
Query: 253 LQKLATLDVSNNFFQGHIPVEIGTY--LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL 310
L+ L L +S N + +E+G + LP L L +L NRL + L
Sbjct: 58 LRHLEILQLSKNLVRK---IEVGAFNGLPSLNTL--------ELFDNRLTTVPTQAFEYL 106
Query: 311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAP 370
++ L L NN IE ++ +R +DL +I SE ++ +
Sbjct: 107 SKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI---------SEAAFEGLV- 156
Query: 371 TWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALN 430
L Y + + + L + ++LS N+L P LT +R L
Sbjct: 157 --------NLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 431 LSHNNLTGTIPITFSNLKQIESLDLSYN 458
L H + F +LK +E L+LS+N
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHN 236
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 414 GEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH----GKIPQLIV 469
E+P I TR LNL N++ TF +L+ +E L LS NL+ G L
Sbjct: 27 AEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 470 LTTLAVFRVAYNNLSGKIPDRVAQF-STFEEDSYEGNPF 507
L TL +F +N +P + ++ S E NP
Sbjct: 85 LNTLELF----DNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|3EBL|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3ED1|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga3
Length = 365
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 364 YYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYL 423
Y+ A P PA + F PNG +G + L +SG+DL+C++ Q+ Y
Sbjct: 253 YWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDR-------QLAYA 305
Query: 424 TRIR 427
+R
Sbjct: 306 DALR 309
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 426 IRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSG 485
+R L+L+H +LT + L + LDLS+N L P L L L V + + N L
Sbjct: 443 VRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500
Query: 486 KIPDRVAQFSTFEE 499
D VA +E
Sbjct: 501 V--DGVANLPRLQE 512
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 120 SLPLCLTNLTSLQVLDVSYNQL--TESISSSPLMLLTSIEELILSNNHFQIPISLEPLSN 177
+LP L L L+VL S N L + +++ P ++EL+L NN Q +++PL +
Sbjct: 477 ALPPALAALRCLEVLQASDNALENVDGVANLP-----RLQELLLCNNRLQQSAAIQPLVS 531
Query: 178 LSKLKAFN 185
+L N
Sbjct: 532 CPRLVLLN 539
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 426 IRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSG 485
+R L+L+H +LT + L + LDLS+N L P L L L V + + N L
Sbjct: 443 VRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500
Query: 486 KIPDRVAQFSTFEE 499
D VA +E
Sbjct: 501 V--DGVANLPRLQE 512
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 120 SLPLCLTNLTSLQVLDVSYNQL--TESISSSPLMLLTSIEELILSNNHFQIPISLEPLSN 177
+LP L L L+VL S N L + +++ P ++EL+L NN Q +++PL +
Sbjct: 477 ALPPALAALRCLEVLQASDNALENVDGVANLP-----RLQELLLCNNRLQQSAAIQPLVS 531
Query: 178 LSKLKAFN 185
+L N
Sbjct: 532 CPRLVLLN 539
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 229 LKNADLSHLNLS--GEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNL 286
L++ D H NL EF +L L+ L LD+S+ H V GL L +
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLS----LRNLIYLDISHT----HTRVAFNGIFNGLSSLEV 154
Query: 287 SRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNN 346
+ A N N L P+ L +++L L+ +E P L ++++++SHNN
Sbjct: 155 LKMAGNSFQENFL----PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 347 L 347
Sbjct: 211 F 211
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
L +++ +DLS +L PT L+ ++ LN+SHNN + L ++ LD S N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 263 NNFFQGHIPVEIGTYLPGLMHL-NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANN 321
NF GH+P+ LP HL N+ F L++ R W+DRL + YL+ N
Sbjct: 385 KNFDVGHVPIR----LPRTKHLLNVINENFGTLAFCR------RWLDRLGESKYLMALKN 434
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 263 NNFFQGHIPVEIGTYLPGLMHL-NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANN 321
NF GH+P+ LP HL N+ F L++ R W+DRL + YL+ N
Sbjct: 385 KNFDVGHVPIR----LPRTKHLLNVINENFGTLAFCR------RWLDRLGESKYLMALKN 434
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 263 NNFFQGHIPVEIGTYLPGLMHL-NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANN 321
NF GH+P+ LP HL N+ F L++ R W+DRL + YL+ N
Sbjct: 276 KNFDVGHVPIR----LPRTKHLLNVINENFGTLAFCR------RWLDRLGESKYLMALKN 325
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 263 NNFFQGHIPVEIGTYLPGLMHL-NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANN 321
NF GH+P+ LP HL N+ F L++ R W+DRL + YL+ N
Sbjct: 277 KNFDVGHVPIR----LPRTKHLLNVINENFGTLAFCR------RWLDRLGESKYLMALKN 326
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 81/208 (38%), Gaps = 31/208 (14%)
Query: 253 LQKLATLDVSNNFFQGHIPVEIGTY--LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL 310
L+ L L +S N + +E+G + LP L L +L NRL + L
Sbjct: 58 LRHLEILQLSKNLVRK---IEVGAFNGLPSLNTL--------ELFDNRLTTVPTQAFEYL 106
Query: 311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAP 370
++ L L NN IE ++ +R +DL +I SE ++ +
Sbjct: 107 SKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI---------SEAAFEGLV- 156
Query: 371 TWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALN 430
L Y + + + L + ++LS N+L P LT +R L
Sbjct: 157 --------NLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 431 LSHNNLTGTIPITFSNLKQIESLDLSYN 458
L H + F +LK +E L+LS+N
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHN 236
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 414 GEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH----GKIPQLIV 469
E+P I TR LNL N++ TF +L+ +E L LS NL+ G L
Sbjct: 27 AEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 470 LTTLAVFRVAYNNLSGKIPDRVAQF-STFEEDSYEGNPF 507
L TL +F +N +P + ++ S E NP
Sbjct: 85 LNTLELF----DNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Query: 253 LQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQ 312
+ L TLDVS N H + ++ LNLS N L GS+ + P+
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM--------LTGSVFRCLP--PK 451
Query: 313 ISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTW 372
+ L L NN I IP + L+ ++ ++++ N L +P + + S Y W
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPW 509
Query: 373 DHASAPALSYFS 384
D + P + Y S
Sbjct: 510 D-CTCPGIRYLS 520
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 423 LTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ-LIVLTTLAVFRVAYN 481
LT + LNLS N L F NL ++E LDLSYN + Q + L L + N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 482 NLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSC 517
L +PD + F+ + +L+ P SC
Sbjct: 382 QLKS-VPDGI-----FDRLTSLQKIWLHTNPWDCSC 411
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 67/186 (36%), Gaps = 25/186 (13%)
Query: 45 NKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQT-TSLQELNVASNKLTRNFPXXXXX 103
N I F L HL+ L + N +R +GA+ SL L + N LT
Sbjct: 86 NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145
Query: 104 XXXXXXXYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSP-------------- 149
++ NN + + SL LD+ + E IS
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205
Query: 150 --------LMLLTSIEELILSNNHFQ--IPISLEPLSNLSKLKAFNGEIYLETESHYNSL 199
L L +EEL +S NHF P S LS+L KL N ++ L + ++ L
Sbjct: 206 CNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265
Query: 200 TPKFQL 205
+L
Sbjct: 266 ASLVEL 271
>pdb|1UAZ|A Chain A, Crystal Structure Of Archaerhodopsin-1
pdb|1UAZ|B Chain B, Crystal Structure Of Archaerhodopsin-1
Length = 254
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 537 GSLIDMDSFLITFTVSYGIAIIGIIGVLYVNPYWRRRWFYLVEVCMTSCYYFVGDNLILK 596
G+L+ +D+ +I + G++G L P R W+ +CM YF+ +L
Sbjct: 115 GTLVGVDALMI---------VTGLVGALSHTPLARYTWWLFSTICMIVVLYFLATSLRAA 165
Query: 597 RFYRG 601
RG
Sbjct: 166 AKERG 170
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 125 LTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSK---L 181
L L++LQVL + NQ+T + SPL LT+++ L + N L PL+NLSK L
Sbjct: 125 LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTL 178
Query: 182 KAFNGEI 188
KA + +I
Sbjct: 179 KADDNKI 185
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 44/121 (36%), Gaps = 16/121 (13%)
Query: 248 MPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFND-------------- 293
+P H Q A L ++NN F I LP L +N S N D
Sbjct: 26 IPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85
Query: 294 --LSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHI 351
L+ NRL+ L + L+L +N I L VRL+ L N ++
Sbjct: 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145
Query: 352 P 352
P
Sbjct: 146 P 146
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 376 SAPALSYFSPNGSPMGK--EETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 433
+ P L+ S + + + + ++T Q TS+ + LS N+LT + + + N+S+
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSY 195
Query: 434 NNL-TGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSG 485
N L T IPI +E LD S+N + + + V L + ++ +NNL+
Sbjct: 196 NLLSTLAIPIA------VEELDASHNSI--NVVRGPVNVELTILKLQHNNLTD 240
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 376 SAPALSYFSPNGSPMGK--EETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 433
+ P L+ S + + + + ++T Q TS+ + LS N+LT + + + N+S+
Sbjct: 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSY 201
Query: 434 NNL-TGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484
N L T IPI +E LD S+N ++ + + V L + ++ +NNL+
Sbjct: 202 NLLSTLAIPIA------VEELDASHNSIN--VVRGPVNVELTILKLQHNNLT 245
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458
LTS++ + L NKL LT + LNLS N L F L Q++ L L+ N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 459 LLHGKIPQLIV--LTTLAVFRVAYNNLSGKIPDRV 491
L +P + LT L R+ N L +PD V
Sbjct: 111 QLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGV 143
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 111 YIDNNDLSGSLPLCLTN-LTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-I 168
Y+ N L SLP + N LTSL L++S NQL +S+ + LT ++EL L+ N Q +
Sbjct: 58 YLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQSL 115
Query: 169 PISL-EPLSNLSKLKAFNGEIYLETESHYNSLT 200
P + + L+ L L+ + ++ + ++ LT
Sbjct: 116 PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 399 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
LT + + L N+L +P+ + LT+++ L L+ N L F L +++L LS
Sbjct: 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164
Query: 458 NLL----HGKIPQLIVLTTLAVF 476
N L HG +L L T+ +F
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLF 187
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 399 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457
LT + + L N+L +P+ + LT+++ L L+ N L F L +++L LS
Sbjct: 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164
Query: 458 NLL----HGKIPQLIVLTTLAVF 476
N L HG +L L T+ +F
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLF 187
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 405 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI 464
+DLS N L+ + T++ LNLS N L T+ + +L + +LDL+ N +
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL--ESLSTLRTLDLNNNY----V 92
Query: 465 PQLIVLTTLAVFRVAYNNLS 484
+L+V ++ A NN+S
Sbjct: 93 QELLVGPSIETLHAANNNIS 112
>pdb|1LF6|A Chain A, Crystal Structure Of Bacterial Glucoamylase
pdb|1LF6|B Chain B, Crystal Structure Of Bacterial Glucoamylase
pdb|1LF9|A Chain A, Crystal Structure Of Bacterial Glucoamylase Complexed With
Acarbose
pdb|1LF9|B Chain B, Crystal Structure Of Bacterial Glucoamylase Complexed With
Acarbose
Length = 684
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 343 SHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSM 402
+ NN + F L N A+SE YY PT D A + + +G +ET ++ +
Sbjct: 42 TANNYVSKVWFTLANGAISEVYY----PTIDTADVKEIKFIVTDGKSFVPDETKDAISKV 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,384,453
Number of Sequences: 62578
Number of extensions: 725212
Number of successful extensions: 2157
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1514
Number of HSP's gapped (non-prelim): 405
length of query: 603
length of database: 14,973,337
effective HSP length: 104
effective length of query: 499
effective length of database: 8,465,225
effective search space: 4224147275
effective search space used: 4224147275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)