Query 036984
Match_columns 603
No_of_seqs 393 out of 4229
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:25:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.3E-51 7.1E-56 468.3 38.3 498 1-511 89-610 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.7E-47 3.7E-52 437.7 37.0 499 4-513 68-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.9E-42 1.5E-46 333.1 7.5 397 33-513 53-457 (873)
4 KOG4194 Membrane glycoprotein 100.0 8.9E-39 1.9E-43 311.5 6.3 404 60-543 54-492 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.9E-36 8.5E-41 280.8 -15.1 413 31-508 67-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.1E-35 2.4E-40 277.8 -16.0 433 32-519 45-529 (565)
7 KOG0444 Cytoskeletal regulator 100.0 9.2E-33 2E-37 271.5 -4.3 370 31-512 6-379 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 5.2E-32 1.1E-36 266.2 -3.7 336 31-479 54-394 (1255)
9 KOG0618 Serine/threonine phosp 100.0 5.4E-32 1.2E-36 278.0 -4.9 458 7-509 23-490 (1081)
10 KOG0618 Serine/threonine phosp 100.0 3.4E-30 7.3E-35 264.9 -3.2 423 6-501 46-506 (1081)
11 KOG4237 Extracellular matrix p 99.9 2.8E-29 6.2E-34 234.7 -9.4 304 19-349 54-360 (498)
12 PLN03210 Resistant to P. syrin 99.9 4.4E-23 9.6E-28 236.7 26.9 361 34-482 534-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 1.7E-22 3.8E-27 231.8 26.6 339 29-459 555-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 7E-24 1.5E-28 198.8 -0.5 312 62-513 50-364 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 6.6E-21 1.4E-25 203.1 16.3 74 82-167 202-275 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.6E-20 3.6E-25 200.1 16.9 95 58-167 201-295 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.7E-18 5.8E-23 184.6 13.2 75 60-142 180-254 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 4.1E-18 8.8E-23 183.2 12.9 246 106-461 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 8.5E-19 1.8E-23 175.4 -3.2 60 400-459 250-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-18 3.6E-23 173.3 -4.4 287 9-347 2-319 (319)
21 KOG0617 Ras suppressor protein 99.6 2.1E-18 4.5E-23 143.8 -5.5 185 250-488 29-216 (264)
22 KOG0617 Ras suppressor protein 99.6 6.8E-17 1.5E-21 134.8 -4.2 111 54-166 29-139 (264)
23 PLN03150 hypothetical protein; 99.6 1.1E-14 2.3E-19 156.5 11.2 118 401-518 419-538 (623)
24 KOG3207 Beta-tubulin folding c 99.2 1.9E-12 4.1E-17 124.3 2.0 213 224-486 118-341 (505)
25 KOG0532 Leucine-rich repeat (L 99.2 4.8E-13 1.1E-17 132.3 -3.7 171 255-484 76-247 (722)
26 KOG1259 Nischarin, modulator o 99.2 2.6E-12 5.5E-17 117.3 0.5 106 399-508 306-412 (490)
27 PF14580 LRR_9: Leucine-rich r 99.2 1.8E-11 3.9E-16 107.6 4.3 122 310-477 18-146 (175)
28 COG4886 Leucine-rich repeat (L 99.2 3.6E-11 7.9E-16 123.7 7.2 178 254-488 116-294 (394)
29 KOG1259 Nischarin, modulator o 99.2 1E-11 2.2E-16 113.4 2.1 131 310-487 283-415 (490)
30 KOG3207 Beta-tubulin folding c 99.1 7.3E-12 1.6E-16 120.4 -0.7 219 3-242 119-341 (505)
31 PF14580 LRR_9: Leucine-rich r 99.1 3.9E-11 8.4E-16 105.5 3.6 111 54-167 15-126 (175)
32 KOG4658 Apoptotic ATPase [Sign 99.1 4.1E-11 8.8E-16 131.6 4.3 151 31-187 522-676 (889)
33 PLN03150 hypothetical protein; 99.1 2.4E-10 5.2E-15 123.1 9.4 112 336-488 419-532 (623)
34 COG4886 Leucine-rich repeat (L 99.1 2.5E-10 5.4E-15 117.6 7.7 197 207-465 97-294 (394)
35 KOG0532 Leucine-rich repeat (L 99.1 3.1E-12 6.7E-17 126.7 -6.3 171 289-508 77-247 (722)
36 KOG1909 Ran GTPase-activating 99.0 1.9E-11 4.1E-16 114.4 -3.3 138 310-484 156-311 (382)
37 KOG1909 Ran GTPase-activating 99.0 3.2E-11 7E-16 112.9 -2.1 164 307-507 116-310 (382)
38 PF13855 LRR_8: Leucine rich r 98.9 7.7E-10 1.7E-14 79.9 3.4 60 401-460 2-61 (61)
39 KOG0531 Protein phosphatase 1, 98.9 2.5E-10 5.4E-15 117.7 0.4 108 223-348 91-199 (414)
40 PF13855 LRR_8: Leucine rich r 98.9 9.7E-10 2.1E-14 79.4 3.2 59 82-140 2-60 (61)
41 KOG1859 Leucine-rich repeat pr 98.7 4E-10 8.7E-15 114.9 -4.5 113 393-510 180-294 (1096)
42 KOG1859 Leucine-rich repeat pr 98.7 3.5E-10 7.6E-15 115.3 -5.2 181 250-485 105-293 (1096)
43 KOG4658 Apoptotic ATPase [Sign 98.7 6.9E-09 1.5E-13 114.3 3.3 107 31-140 544-653 (889)
44 KOG0531 Protein phosphatase 1, 98.7 2.2E-09 4.7E-14 110.7 -0.8 106 56-167 70-175 (414)
45 KOG2982 Uncharacterized conser 98.4 4E-08 8.6E-13 90.3 0.4 230 7-262 47-287 (418)
46 KOG4579 Leucine-rich repeat (L 98.3 3.3E-08 7.2E-13 80.2 -2.3 59 401-461 78-136 (177)
47 KOG2120 SCF ubiquitin ligase, 98.2 1.4E-08 3.1E-13 93.2 -8.3 182 81-289 185-373 (419)
48 KOG2982 Uncharacterized conser 98.2 1.1E-06 2.4E-11 81.1 3.6 110 56-166 43-158 (418)
49 KOG4579 Leucine-rich repeat (L 98.1 1.2E-07 2.5E-12 77.2 -3.3 108 398-509 51-160 (177)
50 PF12799 LRR_4: Leucine Rich r 98.1 2.1E-06 4.6E-11 56.5 2.4 36 425-461 2-37 (44)
51 KOG3665 ZYG-1-like serine/thre 98.1 1.5E-06 3.3E-11 93.6 1.9 106 6-115 123-230 (699)
52 COG5238 RNA1 Ran GTPase-activa 98.0 1.1E-06 2.3E-11 80.1 -0.4 109 400-508 185-316 (388)
53 KOG2120 SCF ubiquitin ligase, 98.0 7.4E-08 1.6E-12 88.6 -8.5 132 32-165 185-324 (419)
54 KOG1644 U2-associated snRNP A' 98.0 8.9E-06 1.9E-10 71.1 4.4 105 398-504 40-149 (233)
55 KOG1644 U2-associated snRNP A' 97.9 1.5E-05 3.2E-10 69.8 5.1 126 34-165 21-151 (233)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.2E-10 52.5 3.4 35 83-118 3-37 (44)
57 COG5238 RNA1 Ran GTPase-activa 97.8 1.2E-06 2.5E-11 79.9 -3.1 226 80-349 29-286 (388)
58 KOG4341 F-box protein containi 97.8 4.9E-07 1.1E-11 87.3 -6.8 83 33-115 139-226 (483)
59 PRK15386 type III secretion pr 97.7 0.00015 3.2E-09 72.2 9.4 34 399-435 155-188 (426)
60 PRK15386 type III secretion pr 97.7 0.00016 3.5E-09 72.0 9.3 11 400-410 177-187 (426)
61 KOG4341 F-box protein containi 97.7 1.2E-06 2.5E-11 84.7 -6.3 87 204-290 347-437 (483)
62 PF13306 LRR_5: Leucine rich r 97.5 0.00029 6.2E-09 59.7 6.9 105 53-163 7-112 (129)
63 PF13306 LRR_5: Leucine rich r 97.5 0.0003 6.6E-09 59.5 6.9 118 31-157 11-129 (129)
64 KOG3665 ZYG-1-like serine/thre 97.5 7.6E-05 1.7E-09 80.7 3.8 110 3-118 146-263 (699)
65 KOG2739 Leucine-rich acidic nu 97.0 0.00027 5.9E-09 64.8 1.7 79 399-479 64-151 (260)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00043 9.3E-09 63.5 2.5 104 31-138 42-152 (260)
67 KOG2123 Uncharacterized conser 96.8 4.1E-05 9E-10 70.3 -5.5 84 57-144 18-103 (388)
68 KOG2123 Uncharacterized conser 96.8 5E-05 1.1E-09 69.7 -5.0 83 4-95 18-102 (388)
69 KOG1947 Leucine rich repeat pr 96.0 0.00077 1.7E-08 71.5 -2.8 18 221-238 356-373 (482)
70 KOG1947 Leucine rich repeat pr 95.5 0.0023 5.1E-08 67.8 -1.3 134 3-137 186-329 (482)
71 PF00560 LRR_1: Leucine Rich R 95.2 0.0092 2E-07 32.5 1.0 20 426-446 2-21 (22)
72 KOG4308 LRR-containing protein 94.4 0.00029 6.3E-09 72.9 -11.5 85 400-484 204-303 (478)
73 PF00560 LRR_1: Leucine Rich R 94.4 0.015 3.4E-07 31.6 0.6 11 108-118 3-13 (22)
74 KOG4308 LRR-containing protein 93.4 0.0003 6.4E-09 72.9 -13.6 88 204-292 88-185 (478)
75 smart00369 LRR_TYP Leucine-ric 93.4 0.062 1.4E-06 30.5 1.8 21 58-78 2-22 (26)
76 smart00370 LRR Leucine-rich re 93.4 0.062 1.4E-06 30.5 1.8 21 58-78 2-22 (26)
77 PF13504 LRR_7: Leucine rich r 93.2 0.066 1.4E-06 26.9 1.5 13 59-71 2-14 (17)
78 KOG0473 Leucine-rich repeat pr 91.8 0.0055 1.2E-07 55.2 -5.9 84 398-484 40-124 (326)
79 smart00369 LRR_TYP Leucine-ric 90.3 0.25 5.4E-06 28.0 2.0 22 254-276 2-23 (26)
80 smart00370 LRR Leucine-rich re 90.3 0.25 5.4E-06 28.0 2.0 22 254-276 2-23 (26)
81 KOG3864 Uncharacterized conser 89.7 0.047 1E-06 48.4 -2.0 85 311-434 101-186 (221)
82 KOG0473 Leucine-rich repeat pr 88.5 0.023 5.1E-07 51.3 -4.7 67 394-462 59-125 (326)
83 PF08693 SKG6: Transmembrane a 86.3 0.35 7.6E-06 30.4 0.9 27 546-572 12-38 (40)
84 PF13516 LRR_6: Leucine Rich r 81.6 0.41 8.8E-06 26.5 -0.2 14 335-348 2-15 (24)
85 smart00365 LRR_SD22 Leucine-ri 80.2 1.5 3.2E-05 24.9 1.7 15 58-72 2-16 (26)
86 TIGR00864 PCC polycystin catio 78.2 1.3 2.7E-05 54.8 2.2 32 478-509 2-33 (2740)
87 KOG3864 Uncharacterized conser 76.0 0.28 6.2E-06 43.6 -2.9 35 82-116 102-136 (221)
88 KOG3763 mRNA export factor TAP 75.8 1.4 3.1E-05 45.4 1.5 11 107-117 272-282 (585)
89 smart00364 LRR_BAC Leucine-ric 73.6 2.3 4.9E-05 24.1 1.3 13 425-437 3-15 (26)
90 PF12273 RCR: Chitin synthesis 71.1 2.5 5.4E-05 35.5 1.7 10 549-558 5-14 (130)
91 smart00368 LRR_RI Leucine rich 69.1 4.1 8.9E-05 23.5 1.8 14 448-461 2-15 (28)
92 PF04478 Mid2: Mid2 like cell 65.5 3.2 6.9E-05 35.1 1.1 22 545-566 50-71 (154)
93 PF12191 stn_TNFRSF12A: Tumour 60.4 5.5 0.00012 32.3 1.6 16 561-576 96-111 (129)
94 PTZ00382 Variant-specific surf 60.2 5.3 0.00011 31.3 1.5 12 546-557 68-79 (96)
95 PF15102 TMEM154: TMEM154 prot 59.4 5.2 0.00011 33.7 1.3 13 559-571 74-86 (146)
96 KOG4242 Predicted myosin-I-bin 54.6 55 0.0012 33.7 7.7 36 426-461 415-453 (553)
97 PF01102 Glycophorin_A: Glycop 49.7 5.2 0.00011 32.8 -0.1 25 547-571 67-91 (122)
98 KOG3763 mRNA export factor TAP 46.0 14 0.00029 38.6 2.1 71 25-95 211-284 (585)
99 TIGR00864 PCC polycystin catio 45.4 15 0.00032 46.1 2.6 36 430-465 1-36 (2740)
100 smart00367 LRR_CC Leucine-rich 44.0 15 0.00033 20.5 1.3 11 32-42 2-12 (26)
101 PF08374 Protocadherin: Protoc 42.7 27 0.00058 31.6 3.2 22 545-566 39-60 (221)
102 PTZ00370 STEVOR; Provisional 41.0 9.6 0.00021 36.0 0.2 11 560-570 270-280 (296)
103 TIGR01478 STEVOR variant surfa 38.3 9.5 0.00021 36.0 -0.3 13 559-571 273-285 (295)
104 PHA03099 epidermal growth fact 35.5 17 0.00036 29.7 0.7 29 551-579 107-135 (139)
105 PRK01844 hypothetical protein; 29.2 25 0.00055 25.6 0.7 27 550-576 8-34 (72)
106 PRK00523 hypothetical protein; 28.2 24 0.00052 25.7 0.5 27 550-576 9-35 (72)
107 PF02439 Adeno_E3_CR2: Adenovi 28.0 31 0.00068 21.5 0.9 11 548-558 7-17 (38)
108 PF14991 MLANA: Protein melan- 27.7 19 0.00042 28.7 -0.1 22 549-570 27-48 (118)
109 PF11770 GAPT: GRB2-binding ad 27.5 12 0.00026 31.4 -1.3 15 550-564 13-27 (158)
110 PF15050 SCIMP: SCIMP protein 25.6 27 0.00058 28.1 0.4 21 545-565 8-28 (133)
111 PF07204 Orthoreo_P10: Orthore 23.1 36 0.00079 26.1 0.6 27 544-570 42-68 (98)
112 KOG4242 Predicted myosin-I-bin 22.6 1.2E+02 0.0027 31.3 4.3 284 31-324 164-481 (553)
113 PTZ00087 thrombosponding-relat 22.5 2E+02 0.0042 27.1 5.2 16 555-570 306-321 (340)
114 PF02480 Herpes_gE: Alphaherpe 20.8 33 0.00071 35.6 0.0 25 552-576 362-386 (439)
115 KOG2087 Glycoprotein hormone r 20.3 6.1 0.00013 38.8 -5.0 31 572-602 59-90 (363)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.3e-51 Score=468.29 Aligned_cols=498 Identities=27% Similarity=0.365 Sum_probs=356.2
Q ss_pred CCCCCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-
Q 036984 1 FHEFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ- 79 (603)
Q Consensus 1 f~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~- 79 (603)
|..+++|++|++++|.+.. .+.......+++|++|+|++|.+++... ...+++|++|++++|.+....+..+.
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~--~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSG--PIPDDIFTTSSSLRYLNLSNNNFTGSIP----RGSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred HhCCCCCCEEECCCCccCC--cCChHHhccCCCCCEEECcCCccccccC----ccccCCCCEEECcCCcccccCChHHhc
Confidence 4567888888888876642 1112222246788888888888765321 24578888888888888766666666
Q ss_pred CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEE
Q 036984 80 TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEEL 159 (603)
Q Consensus 80 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L 159 (603)
+++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..++++++|++|++++|.+.+.+|. .+..+++|++|
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L 241 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHL 241 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhcCCCCCEE
Confidence 88888888888888877888888888888888888888877888888888888888888888776776 67888888888
Q ss_pred EccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcc
Q 036984 160 ILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNL 239 (603)
Q Consensus 160 ~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i 239 (603)
++++|.+.+..+ ..+.++++|+.+++..+.........+..+.+|+.|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 242 ~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 242 DLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred ECcCceeccccC-hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 888888764333 3566777777777764433333333445566888888888888888888888888888888888888
Q ss_pred cCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcc----------------cccCCcCcccC
Q 036984 240 SGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN----------------DLSYNRLQGSI 303 (603)
Q Consensus 240 ~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~----------------~l~~~~~~~~~ 303 (603)
.+..|.+ +..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+. +++.|.+.+.+
T Consensus 321 ~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~ 396 (968)
T PLN00113 321 TGKIPVA---LTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396 (968)
T ss_pred CCcCChh---HhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC
Confidence 8777776 567788888888888887777766554 778888888887652 45566677778
Q ss_pred CccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhccccccccc---CCC-CCCCcCCCCCC
Q 036984 304 PNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYY---DAV-APTWDHASAPA 379 (603)
Q Consensus 304 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~ 379 (603)
|..++.+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..++...... ... ...........
T Consensus 397 p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 476 (968)
T PLN00113 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR 476 (968)
T ss_pred CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccccc
Confidence 88888888888888888888888888888888888888888888877776554433221110 000 00111111223
Q ss_pred eeEEecCCCC--CCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCC
Q 036984 380 LSYFSPNGSP--MGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457 (603)
Q Consensus 380 ~~~~~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 457 (603)
+..+...++. ......+..+++|+.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..|.++++|+.||+++
T Consensus 477 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 556 (968)
T PLN00113 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556 (968)
T ss_pred ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCC
Confidence 3333333322 22233455677777888888888777777777778888888888888877777777778888888888
Q ss_pred CcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCC
Q 036984 458 NLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQ 511 (603)
Q Consensus 458 N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~ 511 (603)
|++++.+| .+..+++|+.|++++|++.+.+|.. +.+.++....+.|||.+|+.
T Consensus 557 N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~ 610 (968)
T PLN00113 557 NQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGG 610 (968)
T ss_pred CcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCC
Confidence 88877777 6777777888888888888777764 56666667777788877753
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-47 Score=437.68 Aligned_cols=499 Identities=27% Similarity=0.365 Sum_probs=402.6
Q ss_pred CCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCC
Q 036984 4 FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSL 83 (603)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L 83 (603)
..+++.|+++++.+.... ...+ ..+++|+.|+|++|++.+. +....+..+++|++|++++|.+++..+. ..+++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~--~~~~-~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L 142 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKI--SSAI-FRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNL 142 (968)
T ss_pred CCcEEEEEecCCCccccC--ChHH-hCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc-cccCCC
Confidence 346889999987764322 2222 3489999999999998753 2223456999999999999998765443 228999
Q ss_pred CEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccC
Q 036984 84 QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSN 163 (603)
Q Consensus 84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~ 163 (603)
++|++++|.+.+..|..++++++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|. .+..+++|++|++++
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGY 221 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcC
Confidence 9999999999988999999999999999999999989999999999999999999999887777 889999999999999
Q ss_pred ceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCC
Q 036984 164 NHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEF 243 (603)
Q Consensus 164 n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 243 (603)
|.+.+..+ ..+.++++|+.+++..+.........+..+.+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+
T Consensus 222 n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 222 NNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred CccCCcCC-hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 99875443 45778888888888755444444445667789999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCc----------------ccccCCcCcccCCccc
Q 036984 244 PNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF----------------NDLSYNRLQGSIPNWI 307 (603)
Q Consensus 244 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l----------------~~l~~~~~~~~~~~~l 307 (603)
|.+ +..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+ ++++.|.+.+.+|.++
T Consensus 301 p~~---~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 301 PEL---VIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred Chh---HcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 887 677899999999999998777766554 89999999999876 3566677777777777
Q ss_pred cCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhccccccccc---CCCCCCC--cCCCCCCeeE
Q 036984 308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYY---DAVAPTW--DHASAPALSY 382 (603)
Q Consensus 308 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~ 382 (603)
..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.+|..+..++...... ....... .......+..
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 456 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence 7778888888888888878888888888888888888888888887776654322110 0000000 0112333444
Q ss_pred EecCCCCCC-cchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCc
Q 036984 383 FSPNGSPMG-KEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461 (603)
Q Consensus 383 ~~~~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 461 (603)
+...++... ........++|+.|++++|++++..|..+..+++|+.|+|++|++++.+|..+.++++|+.|++++|.++
T Consensus 457 L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 457 LSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536 (968)
T ss_pred EECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence 443332211 1111223578999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCC
Q 036984 462 GKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPL 513 (603)
Q Consensus 462 ~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~ 513 (603)
+.+| .+..+++|+.|++++|++++.+|..+..+..++.+++++|++.+..|.
T Consensus 537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9999 889999999999999999999999999999999999999999875553
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-42 Score=333.05 Aligned_cols=397 Identities=23% Similarity=0.258 Sum_probs=307.1
Q ss_pred CCcEEEccCCcCCCCCCCccccCCC--CCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984 33 SLRLLSLSYSRLNKNTILDQGFCQL--VHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE 109 (603)
Q Consensus 33 ~L~~L~Ls~n~i~~~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (603)
.-+.||.+++.+... ....+.+. +.-++|++++|.++++....|. +++|+.+.+..|.++. +|...+...+|+.
T Consensus 53 ~~~lldcs~~~lea~--~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAI--DKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEK 129 (873)
T ss_pred CceeeecCccccccc--cccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-cccccccccceeE
Confidence 445667777666542 11222222 2234577777777777777666 7777777777777766 5655555566777
Q ss_pred EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984 110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY 189 (603)
Q Consensus 110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~ 189 (603)
|+|.+|.|+.+-.+.++-++.|+.|||+.|.|+ .++...|..-.++++|++++|+|+.. ....|.
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l-~~~~F~------------- 194 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTL-ETGHFD------------- 194 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeecccccccc-cccccc-------------
Confidence 777777777666666777777777777777776 46655666667777777777777621 111122
Q ss_pred eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccccc
Q 036984 190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGH 269 (603)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 269 (603)
.+.+|..|.|+.|+++...+..|.++++|+.|+|..|.|.- -+++ .|.++++|+.|.+..|++. .
T Consensus 195 -----------~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri--ve~l-tFqgL~Sl~nlklqrN~I~-k 259 (873)
T KOG4194|consen 195 -----------SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI--VEGL-TFQGLPSLQNLKLQRNDIS-K 259 (873)
T ss_pred -----------ccchheeeecccCcccccCHHHhhhcchhhhhhccccceee--ehhh-hhcCchhhhhhhhhhcCcc-c
Confidence 22266677777777777777888889999999999998742 2221 2788999999999999998 7
Q ss_pred CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984 270 IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG 349 (603)
Q Consensus 270 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 349 (603)
+..+.|-++.++++|+|+.|++..+. ..|+-++.+|++|++++|.|..+-++.+...++|+.|+|+.|+++
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn--------~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~- 330 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVN--------EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT- 330 (873)
T ss_pred ccCcceeeecccceeecccchhhhhh--------cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-
Confidence 88888888999999999999887665 345566999999999999999999999999999999999999998
Q ss_pred CCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEE
Q 036984 350 HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL 429 (603)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 429 (603)
......+..+..|++|+|++|.+...-..+|..+++|+.|
T Consensus 331 ----------------------------------------~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 331 ----------------------------------------RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred ----------------------------------------cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 3345566678899999999999997777889999999999
Q ss_pred ecccccccccCC---cCCcCCCCCCEEeCCCCcCcccCC--CccCCCCCCceecccCcccccCCCcccccCCCCcccccC
Q 036984 430 NLSHNNLTGTIP---ITFSNLKQIESLDLSYNLLHGKIP--QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEG 504 (603)
Q Consensus 430 ~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~g 504 (603)
||++|.|...+. ..|.++++|+.|++.+|++. .+| .|..+++|++|||.+|.+...-|+.|.++ .++.+-+..
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 999999987654 34888999999999999999 666 89999999999999999999999999888 899999988
Q ss_pred CcCCCCCCC
Q 036984 505 NPFLYGQPL 513 (603)
Q Consensus 505 n~~~c~~~~ 513 (603)
-.++|+|.+
T Consensus 449 ssflCDCql 457 (873)
T KOG4194|consen 449 SSFLCDCQL 457 (873)
T ss_pred cceEEeccH
Confidence 899996554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-39 Score=311.46 Aligned_cols=404 Identities=23% Similarity=0.239 Sum_probs=335.2
Q ss_pred CCEEEccCCcCCCCccCccc---CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEc
Q 036984 60 LQELYIRDNDLRDSLLGAWQ---TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDV 136 (603)
Q Consensus 60 L~~L~Ls~n~i~~~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 136 (603)
-+.||.+.+.+..+....+. ...-+.|++++|++..+.+..|.++++|+.+++.+|.++ .+|..-....+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 35689999988887665554 455678999999999988999999999999999999998 67776666677999999
Q ss_pred ccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCC
Q 036984 137 SYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDD 216 (603)
Q Consensus 137 ~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (603)
.+|.|+ .+..+.+..++.|+.||++.|.++.... +.+....++++|+|++|+++
T Consensus 133 ~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~-------------------------~sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 133 RHNLIS-SVTSEELSALPALRSLDLSRNLISEIPK-------------------------PSFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred eccccc-cccHHHHHhHhhhhhhhhhhchhhcccC-------------------------CCCCCCCCceEEeecccccc
Confidence 999998 4666689999999999999998862211 23444558999999999999
Q ss_pred CCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccC
Q 036984 217 GTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSY 296 (603)
Q Consensus 217 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 296 (603)
......|..+.+|..|.|+.|+++..-+.. |..+++|+.|+|..|++. .+....|+++++|+.|.+..|.+..+..
T Consensus 187 ~l~~~~F~~lnsL~tlkLsrNrittLp~r~---Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~D 262 (873)
T KOG4194|consen 187 TLETGHFDSLNSLLTLKLSRNRITTLPQRS---FKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDD 262 (873)
T ss_pred ccccccccccchheeeecccCcccccCHHH---hhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccC
Confidence 999999999999999999999998444443 677999999999999997 6667788889999999999999987775
Q ss_pred CcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCC
Q 036984 297 NRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHAS 376 (603)
Q Consensus 297 ~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (603)
..|.| +.++++|+|+.|+++..-..++.++++|+.|++|+|.|...-+
T Consensus 263 G~Fy~--------l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~------------------------ 310 (873)
T KOG4194|consen 263 GAFYG--------LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI------------------------ 310 (873)
T ss_pred cceee--------ecccceeecccchhhhhhcccccccchhhhhccchhhhheeec------------------------
Confidence 55554 8999999999999998888899999999999999999973322
Q ss_pred CCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCC
Q 036984 377 APALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLS 456 (603)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 456 (603)
......++|++|+|++|+|+...+..|..+..|++|+|++|.++.+....|..+++|++|||+
T Consensus 311 -----------------d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 311 -----------------DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred -----------------chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 233447899999999999998888999999999999999999998888889999999999999
Q ss_pred CCcCcccCC----CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCC---------------CC--CC
Q 036984 457 YNLLHGKIP----QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQ---------------PL--SK 515 (603)
Q Consensus 457 ~N~l~~~~~----~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~---------------~~--~~ 515 (603)
+|.++..+. .+..+++|+.|++.+|++...-...+.++..++++++.+|+..--. .. -|
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLC 453 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEE
Confidence 999987665 5778999999999999999766688899999999999999864421 11 24
Q ss_pred CCCCC-----------CCCcccccccccccCCCCccccc
Q 036984 516 SCDDN-----------GLTTVTTEAYTENEEGGSLIDMD 543 (603)
Q Consensus 516 ~C~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 543 (603)
+|... .......|++|+...+.....++
T Consensus 454 DCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd 492 (873)
T KOG4194|consen 454 DCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVD 492 (873)
T ss_pred eccHHHHHHHHHhcccccceeeeccCCcccccceeEeec
Confidence 56522 22334568888876666655544
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.9e-36 Score=280.79 Aligned_cols=413 Identities=27% Similarity=0.375 Sum_probs=244.0
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEE
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLREL 110 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (603)
+..+.+|++++|++.. .+.+++.+..++.++.++|+++.+++......+++++++++|.+.. .|+.++.+-.|+.+
T Consensus 67 L~~l~vl~~~~n~l~~---lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQ---LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDL 142 (565)
T ss_pred ccceeEEEeccchhhh---CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhh
Confidence 5556666666666543 3445556666666666666666666555556666666666666655 44556666666666
Q ss_pred eccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeecccee
Q 036984 111 YIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYL 190 (603)
Q Consensus 111 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~ 190 (603)
+..+|+++ ..|.++.++.+|..+++.+|++. ..|+ ..-.++.|++|+...|.+.... ..+..+++|..+.+..+.
T Consensus 143 ~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~-~~i~m~~L~~ld~~~N~L~tlP--~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 143 DATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPE-NHIAMKRLKHLDCNSNLLETLP--PELGGLESLELLYLRRNK 217 (565)
T ss_pred hccccccc-cCchHHHHHHHHHHhhccccchh-hCCH-HHHHHHHHHhcccchhhhhcCC--hhhcchhhhHHHHhhhcc
Confidence 66666665 45556666666666666666665 3444 2333666666666666554211 245555555555554222
Q ss_pred eeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccC
Q 036984 191 ETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHI 270 (603)
Q Consensus 191 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 270 (603)
. ...+.|..+..|.++.++.|.+.-...+...+++++..||+..|++. ..|+. +..+.+|+.||+|+|.++ .+
T Consensus 218 i--~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde---~clLrsL~rLDlSNN~is-~L 290 (565)
T KOG0472|consen 218 I--RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE---ICLLRSLERLDLSNNDIS-SL 290 (565)
T ss_pred c--ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH---HHHhhhhhhhcccCCccc-cC
Confidence 2 12335666667777888777776544555567888888888888886 55654 455677888888888887 67
Q ss_pred ChhhhhcCCCCcEEecCCCCcc---------------------------------------------------------c
Q 036984 271 PVEIGTYLPGLMHLNLSRNAFN---------------------------------------------------------D 293 (603)
Q Consensus 271 ~~~~~~~l~~L~~L~L~~n~l~---------------------------------------------------------~ 293 (603)
|..++. + .|+.|-+.+|.+. +
T Consensus 291 p~sLgn-l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~ 368 (565)
T KOG0472|consen 291 PYSLGN-L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD 368 (565)
T ss_pred Cccccc-c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence 877766 5 7888888888761 0
Q ss_pred ccCCcCcccCCccccCCC---CCCEEeccCCcCcccCCccccCCCCCC-EEecCCCcCccCCChhhhcccccccccCCCC
Q 036984 294 LSYNRLQGSIPNWIDRLP---QISYLLLANNYIEGEIPAQLCQLKEVR-LIDLSHNNLSGHIPFCLVNTALSEGYYDAVA 369 (603)
Q Consensus 294 l~~~~~~~~~~~~l~~l~---~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~ 369 (603)
++.-.++ .+|.....-. -.+..+++.|++. ++|..+..+..+. .+.+++|.+. .+|
T Consensus 369 ~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~----------------- 428 (565)
T KOG0472|consen 369 VSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVP----------------- 428 (565)
T ss_pred ccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cch-----------------
Confidence 1111111 1111111111 1455566666655 4444444443333 3344444442 222
Q ss_pred CCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCC
Q 036984 370 PTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQ 449 (603)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 449 (603)
..+..+++|..|+|++|-+. .+|..++.+..|+.|+|+.|++. ..|.+.-.+..
T Consensus 429 ------------------------~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~ 482 (565)
T KOG0472|consen 429 ------------------------LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT 482 (565)
T ss_pred ------------------------HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence 22333556666777666666 55666666666777777777666 56666655566
Q ss_pred CCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCC
Q 036984 450 IESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFL 508 (603)
Q Consensus 450 L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~ 508 (603)
++.+-.++|++....| .+..+..|..||+.+|.+. .+|..++.+..++++.+.|||+-
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 6666666666664444 4666666677777777666 45555666666777777777664
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1.1e-35 Score=277.77 Aligned_cols=433 Identities=24% Similarity=0.323 Sum_probs=320.7
Q ss_pred CCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEe
Q 036984 32 ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELY 111 (603)
Q Consensus 32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (603)
..++.+.+++|.+.. ....+.++..|.+|++++|++...++.+..+..++.++.++|++.. +|..+..+.+|+.++
T Consensus 45 v~l~~lils~N~l~~---l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV---LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchhh---ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhh
Confidence 457788888888764 3356778888888888888888888877778888888888888876 777788888888888
Q ss_pred ccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceee
Q 036984 112 IDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLE 191 (603)
Q Consensus 112 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~ 191 (603)
.++|.+. ..|+.++.+..|+.++..+|+++ ..|. .+..+.++..+++.+|.++...+
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l~~l~~-------------------- 177 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKLKALPE-------------------- 177 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccc-cCch-HHHHHHHHHHhhccccchhhCCH--------------------
Confidence 8888887 67777888888888888888887 5666 67788888888888887752211
Q ss_pred eccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCC
Q 036984 192 TESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIP 271 (603)
Q Consensus 192 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~ 271 (603)
.......|++++...|.+ +.+|..++.+.+|..|++..|++. ..|+ |.++..|.+++++.|.+. .+|
T Consensus 178 ------~~i~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lPe----f~gcs~L~Elh~g~N~i~-~lp 244 (565)
T KOG0472|consen 178 ------NHIAMKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLPE----FPGCSLLKELHVGENQIE-MLP 244 (565)
T ss_pred ------HHHHHHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCCC----CCccHHHHHHHhcccHHH-hhH
Confidence 011123566666666655 467888999999999999999997 6675 788999999999999998 999
Q ss_pred hhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCC
Q 036984 272 VEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHI 351 (603)
Q Consensus 272 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 351 (603)
.+....++++..||+++|++. ..|..+.-+.+|.+||+++|.++ ..|..++++ .|+.|-+.+|++. .+
T Consensus 245 ae~~~~L~~l~vLDLRdNklk---------e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-Ti 312 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNKLK---------EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TI 312 (565)
T ss_pred HHHhcccccceeeeccccccc---------cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HH
Confidence 999988999999999999887 55777777889999999999999 577789999 8999999999985 22
Q ss_pred Chhhhccc------------ccccccC-------CCC-CCCcC---CCCCCeeEEecCC--CCCCcchhhh---------
Q 036984 352 PFCLVNTA------------LSEGYYD-------AVA-PTWDH---ASAPALSYFSPNG--SPMGKEETVQ--------- 397 (603)
Q Consensus 352 ~~~~~~~~------------~~~~~~~-------~~~-~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~--------- 397 (603)
...+.+.. ..++... ... +.+.+ ....+...++.++ ......+.|.
T Consensus 313 Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~ 392 (565)
T KOG0472|consen 313 RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTS 392 (565)
T ss_pred HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEE
Confidence 22221111 0000000 000 00000 0011111111111 0011111111
Q ss_pred ----------------hccc-ceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcC
Q 036984 398 ----------------ILTS-MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL 460 (603)
Q Consensus 398 ----------------~l~~-L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 460 (603)
.+.. ++.+.+++|.+. .+|..+..+++|..|+|++|.+. .+|..++.+..|+.||+|+|++
T Consensus 393 VnfskNqL~elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 393 VNFSKNQLCELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF 470 (565)
T ss_pred EecccchHhhhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc
Confidence 1111 234677777777 88889999999999999999998 7899999999999999999999
Q ss_pred cccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCCCCCCCC
Q 036984 461 HGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDD 519 (603)
Q Consensus 461 ~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~~~~C~~ 519 (603)
. .+| .+-.+..++.+-.++|++....|++++.+..+..++++.|...--+|.-..|..
T Consensus 471 r-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnmtn 529 (565)
T KOG0472|consen 471 R-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTN 529 (565)
T ss_pred c-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccc
Confidence 8 677 555566777777788999988888899999999999999998887776667753
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=9.2e-33 Score=271.46 Aligned_cols=370 Identities=24% Similarity=0.320 Sum_probs=203.6
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEE
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLREL 110 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (603)
++-.+-.|+++|.+++.. .|.....++.++-|.|...++..+|.+.-.+.+|++|.+++|++.. +-+.+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~-FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDR-FPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCc-CchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHH
Confidence 456677777888777643 4556667777777777777777766655557778888888887776 44567777777777
Q ss_pred eccCCCCcc-CcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984 111 YIDNNDLSG-SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY 189 (603)
Q Consensus 111 ~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~ 189 (603)
.+.+|+++. -+|..+.++..|.+||||+|++. ..|. .+.+..++-+|++++|.|. .++-.-+.+|+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~-~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLt---------- 150 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPT-NLEYAKNSIVLNLSYNNIE-TIPNSLFINLT---------- 150 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcch-hhhhhcCcEEEEcccCccc-cCCchHHHhhH----------
Confidence 777777642 35555667777888888888776 4666 6777777777777777765 22211111111
Q ss_pred eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccc-c
Q 036984 190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQ-G 268 (603)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~-~ 268 (603)
.|-.|+++.|++. ..|.....+..|++|+|++|.+...--.. +..+++|+.|.+++.+-+ .
T Consensus 151 --------------DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ---LPsmtsL~vLhms~TqRTl~ 212 (1255)
T KOG0444|consen 151 --------------DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQ---LPSMTSLSVLHMSNTQRTLD 212 (1255)
T ss_pred --------------hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhc---Cccchhhhhhhcccccchhh
Confidence 3334444444432 34445555555666666665543110000 222344444444443211 1
Q ss_pred cCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCc
Q 036984 269 HIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS 348 (603)
Q Consensus 269 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 348 (603)
.+ |..+..+.+|+.+|++.|.+. .+|+.+..+++|+.|+||+|+++
T Consensus 213 N~---------------------------------Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 213 NI---------------------------------PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred cC---------------------------------CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 33 444444555555555555554 45555555555555555555554
Q ss_pred cCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCE
Q 036984 349 GHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA 428 (603)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 428 (603)
. +.. ....-.+|++|++|.|+++ ..|.++..+++|+.
T Consensus 259 e-L~~-----------------------------------------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 259 E-LNM-----------------------------------------TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK 295 (1255)
T ss_pred e-eec-----------------------------------------cHHHHhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence 1 000 0011134555555555555 45555555555555
Q ss_pred Eecccccccc-cCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCc
Q 036984 429 LNLSHNNLTG-TIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNP 506 (603)
Q Consensus 429 L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~ 506 (603)
|++.+|+++- -+|+.++++.+|+.+..++|++. ..| ++..+..|+.|.|++|++. ..|+.+.-++.++.+++..||
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 5555555442 24555555555555555555555 344 5555555555555555555 345555555555555555555
Q ss_pred CCCCCC
Q 036984 507 FLYGQP 512 (603)
Q Consensus 507 ~~c~~~ 512 (603)
-+-.+|
T Consensus 374 nLVMPP 379 (1255)
T KOG0444|consen 374 NLVMPP 379 (1255)
T ss_pred CccCCC
Confidence 555444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=5.2e-32 Score=266.20 Aligned_cols=336 Identities=24% Similarity=0.317 Sum_probs=224.1
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcC--CCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCc
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDL--RDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLR 108 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (603)
+.+|++|.+++|++... ...+..++.||.+++++|++ +++|+++|.+..|+.||||+|++.. .|..+..-+++-
T Consensus 54 lqkLEHLs~~HN~L~~v---hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~i 129 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISV---HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSI 129 (1255)
T ss_pred HhhhhhhhhhhhhhHhh---hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcE
Confidence 55666666666665432 23456666666666666665 3566666666666666666666665 556666666666
Q ss_pred EEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccc
Q 036984 109 ELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI 188 (603)
Q Consensus 109 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~ 188 (603)
.|+||+|+|.++....|.+++.|-+||||+|.+. .+|+ ....+..|++|++++|++. .....++
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~-hfQLrQL------------- 193 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLN-HFQLRQL------------- 193 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhh-HHHHhcC-------------
Confidence 6666666666444445666666666666666664 4555 4566666666666666553 1111122
Q ss_pred eeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCccc-CCCCCCCccccccCCccEEEccCcccc
Q 036984 189 YLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLS-GEFPNWLMPIHCLQKLATLDVSNNFFQ 267 (603)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~ 267 (603)
..+++|+.|.+++.+-+ ..+|.+ +..+.+|..+|+|.|.+.
T Consensus 194 -----------------------------------PsmtsL~vLhms~TqRTl~N~Pts---ld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 194 -----------------------------------PSMTSLSVLHMSNTQRTLDNIPTS---LDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred -----------------------------------ccchhhhhhhcccccchhhcCCCc---hhhhhhhhhccccccCCC
Confidence 23334444444443321 234544 455677788888888877
Q ss_pred ccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcC
Q 036984 268 GHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNL 347 (603)
Q Consensus 268 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 347 (603)
.+|..++. +++|+.|+||+|.++.+.. ..+...+|++|+++.|+++ ..|.+++.+++|+.|.+.+|++
T Consensus 236 -~vPecly~-l~~LrrLNLS~N~iteL~~---------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 236 -IVPECLYK-LRNLRRLNLSGNKITELNM---------TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred -cchHHHhh-hhhhheeccCcCceeeeec---------cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcc
Confidence 77777766 7888888888888876542 2233467888899999988 7888889999999999988888
Q ss_pred cc-CCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcC
Q 036984 348 SG-HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRI 426 (603)
Q Consensus 348 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 426 (603)
+- -+|. .++.+..|+.+..++|.+. .+|+.+..|..|
T Consensus 304 ~FeGiPS-----------------------------------------GIGKL~~Levf~aanN~LE-lVPEglcRC~kL 341 (1255)
T KOG0444|consen 304 TFEGIPS-----------------------------------------GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL 341 (1255)
T ss_pred cccCCcc-----------------------------------------chhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence 62 2332 3344667888888888887 888999999999
Q ss_pred CEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecc
Q 036984 427 RALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVA 479 (603)
Q Consensus 427 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~ 479 (603)
+.|.|++|++. .+|+.+.-++.|+.||+..|+-.-.+| .-..-++|..-++.
T Consensus 342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred HHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 99999999988 788998888999999999998664555 22223556555554
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=5.4e-32 Score=278.01 Aligned_cols=458 Identities=25% Similarity=0.297 Sum_probs=275.7
Q ss_pred CceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCEE
Q 036984 7 LEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQEL 86 (603)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L 86 (603)
+..|+++.|.....+ ..+... .-+|+.||+++|.+.. .+..+..+++|+.|.++.|.|...+.....+.+|+++
T Consensus 23 ~~~ln~~~N~~l~~p--l~~~~~-~v~L~~l~lsnn~~~~---fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~l 96 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRP--LEFVEK-RVKLKSLDLSNNQISS---FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYL 96 (1081)
T ss_pred HHhhhccccccccCc--hHHhhh-eeeeEEeecccccccc---CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhh
Confidence 455666665554433 233333 3348888888887765 3455677788888888888887777555557888888
Q ss_pred EccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCcee
Q 036984 87 NVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166 (603)
Q Consensus 87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~ 166 (603)
.|.+|.+.. .|..+..+++|++|+++.|.+. ..|..+..+..++.+..++|.-...++. . .++++++..|.+
T Consensus 97 nL~~n~l~~-lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~-~ik~~~l~~n~l 168 (1081)
T KOG0618|consen 97 NLKNNRLQS-LPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ-----T-SIKKLDLRLNVL 168 (1081)
T ss_pred eeccchhhc-CchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc-----c-cchhhhhhhhhc
Confidence 888887776 7777888888888888888876 5666666666666666666621111111 1 144455554444
Q ss_pred eeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCC
Q 036984 167 QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNW 246 (603)
Q Consensus 167 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 246 (603)
..... ....+++. .+++..+... ..++..+.+++.+....|++... -..-++++.|+.++|.++...+.
T Consensus 169 ~~~~~-~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~- 237 (1081)
T KOG0618|consen 169 GGSFL-IDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH- 237 (1081)
T ss_pred ccchh-cchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc-
Confidence 32211 11222222 1222211110 11122223444444444443211 11234566666666666532221
Q ss_pred CccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCccc
Q 036984 247 LMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGE 326 (603)
Q Consensus 247 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (603)
....+|++++++.|+++ .+|..+.. +++|+.++..+|.+. .+|..+....+|+.|....|.+. .
T Consensus 238 ----p~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~---------~lp~ri~~~~~L~~l~~~~nel~-y 301 (1081)
T KOG0618|consen 238 ----PVPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANHNRLV---------ALPLRISRITSLVSLSAAYNELE-Y 301 (1081)
T ss_pred ----cccccceeeecchhhhh-cchHHHHh-cccceEecccchhHH---------hhHHHHhhhhhHHHHHhhhhhhh-h
Confidence 12356777777777776 56644443 667777666666654 33444455566666666666665 4
Q ss_pred CCccccCCCCCCEEecCCCcCccCCChhhhccccc-cccc----CCCC--CCCcCCCCCCee--EEecCCCCCCcchhhh
Q 036984 327 IPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALS-EGYY----DAVA--PTWDHASAPALS--YFSPNGSPMGKEETVQ 397 (603)
Q Consensus 327 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~-~~~~----~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 397 (603)
+|....+++.|++|||..|++. .+|+.+...... .... .... +.........+. ++..+.........+.
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~ 380 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV 380 (1081)
T ss_pred CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence 4445555666666666666664 334322211100 0000 0000 001111111111 2223333334445667
Q ss_pred hcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCcee
Q 036984 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFR 477 (603)
Q Consensus 398 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 477 (603)
.+.+|+.|+|++|++.......+.+++.|++|+||+|+++ .+|+.+.++..|++|...+|.+. ..|.++.++.|+.+|
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lD 458 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLD 458 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEe
Confidence 7889999999999998666667888999999999999999 77888999999999999999998 677999999999999
Q ss_pred cccCccccc-CCCcccccCCCCcccccCCcCCC
Q 036984 478 VAYNNLSGK-IPDRVAQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 478 l~~N~l~~~-~p~~~~~l~~l~~~~l~gn~~~c 509 (603)
++.|+++.. +|. ....+.++.++++||+++-
T Consensus 459 lS~N~L~~~~l~~-~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPE-ALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred cccchhhhhhhhh-hCCCcccceeeccCCcccc
Confidence 999999863 443 2344899999999999754
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=3.4e-30 Score=264.88 Aligned_cols=423 Identities=24% Similarity=0.290 Sum_probs=289.6
Q ss_pred CCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCE
Q 036984 6 NLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQE 85 (603)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~ 85 (603)
+|++|+|++|.+..-+. ....+++|+.|+++.|.|.. .+.+..++++|++|.|.+|.+...|.+.-.+++|++
T Consensus 46 ~L~~l~lsnn~~~~fp~----~it~l~~L~~ln~s~n~i~~---vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPI----QITLLSHLRQLNLSRNYIRS---VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQY 118 (1081)
T ss_pred eeEEeeccccccccCCc----hhhhHHHHhhcccchhhHhh---CchhhhhhhcchhheeccchhhcCchhHHhhhcccc
Confidence 48999999988753332 22336789999999999875 446788899999999999998887766655999999
Q ss_pred EEccCCCCCcCCchhhcCCCCCcEEeccCC-------------------CCccCcCccCCCCCCCCEEEcccCcCCccCC
Q 036984 86 LNVASNKLTRNFPLGLCELVLLRELYIDNN-------------------DLSGSLPLCLTNLTSLQVLDVSYNQLTESIS 146 (603)
Q Consensus 86 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-------------------~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 146 (603)
|+++.|.+.. .|..+..+..++.+..++| .+.+.++.....+.. .|+|+.|.+. . .
T Consensus 119 LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~-~ 193 (1081)
T KOG0618|consen 119 LDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V-L 193 (1081)
T ss_pred cccchhccCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h-h
Confidence 9999999876 6666666666666666666 222222222222222 3555555443 1 1
Q ss_pred cccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccC
Q 036984 147 SSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQ 226 (603)
Q Consensus 147 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 226 (603)
.+..+++|+.+....|+++.... .-..++.|...++... ....-....+++.++++.+++... |.++..+
T Consensus 194 --dls~~~~l~~l~c~rn~ls~l~~--~g~~l~~L~a~~n~l~-----~~~~~p~p~nl~~~dis~n~l~~l-p~wi~~~ 263 (1081)
T KOG0618|consen 194 --DLSNLANLEVLHCERNQLSELEI--SGPSLTALYADHNPLT-----TLDVHPVPLNLQYLDISHNNLSNL-PEWIGAC 263 (1081)
T ss_pred --hhhhccchhhhhhhhcccceEEe--cCcchheeeeccCcce-----eeccccccccceeeecchhhhhcc-hHHHHhc
Confidence 23444555555555554432111 0111222222222111 001111223889999999988754 5999999
Q ss_pred CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcc-----
Q 036984 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQG----- 301 (603)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~----- 301 (603)
.+|+.++..+|.++ ..|.. +....+|+.|++..|.+. .+|..... .++|++|+|..|.+.++..+.+.-
T Consensus 264 ~nle~l~~n~N~l~-~lp~r---i~~~~~L~~l~~~~nel~-yip~~le~-~~sL~tLdL~~N~L~~lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 264 ANLEALNANHNRLV-ALPLR---ISRITSLVSLSAAYNELE-YIPPFLEG-LKSLRTLDLQSNNLPSLPDNFLAVLNASL 337 (1081)
T ss_pred ccceEecccchhHH-hhHHH---HhhhhhHHHHHhhhhhhh-hCCCcccc-cceeeeeeehhccccccchHHHhhhhHHH
Confidence 99999999999985 45544 556778888888888887 77765554 778888888888875554432221
Q ss_pred -----------cCCccc--cCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCC
Q 036984 302 -----------SIPNWI--DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAV 368 (603)
Q Consensus 302 -----------~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~ 368 (603)
..| .. ..++.|+.|++.+|.+++..-..+.++..|+.|+|++|++. .+|+
T Consensus 338 ~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpa--------------- 400 (1081)
T KOG0618|consen 338 NTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPA--------------- 400 (1081)
T ss_pred HHHhhhhccccccc-cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCH---------------
Confidence 111 11 12567899999999999887788999999999999999996 3443
Q ss_pred CCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCC
Q 036984 369 APTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLK 448 (603)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 448 (603)
..+..+..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.+++
T Consensus 401 -------------------------s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~ 452 (1081)
T KOG0618|consen 401 -------------------------SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLP 452 (1081)
T ss_pred -------------------------HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcC
Confidence 33455788999999999999 77899999999999999999999 777 788999
Q ss_pred CCCEEeCCCCcCcccCCCccCC-CCCCceecccCcccccCCCcccccCCCCccc
Q 036984 449 QIESLDLSYNLLHGKIPQLIVL-TTLAVFRVAYNNLSGKIPDRVAQFSTFEEDS 501 (603)
Q Consensus 449 ~L~~L~Ls~N~l~~~~~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~ 501 (603)
.|+.+|+|.|.++...-..... +.|++||+++|.-.-..-..+..+..+...+
T Consensus 453 qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~ 506 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMD 506 (1081)
T ss_pred cceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhhee
Confidence 9999999999998533322233 8999999999974323333344444443333
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=2.8e-29 Score=234.72 Aligned_cols=304 Identities=21% Similarity=0.170 Sum_probs=227.2
Q ss_pred cccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccC-CCCCcC
Q 036984 19 VNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVAS-NKLTRN 96 (603)
Q Consensus 19 ~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~-n~l~~~ 96 (603)
..+++.++|.++++....+.|..|+|+. +.+.+|+.+++||.||||+|.|+.|.+++|+ ++++..|.+.+ |+|+.+
T Consensus 54 r~~GL~eVP~~LP~~tveirLdqN~I~~--iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 54 RGKGLTEVPANLPPETVEIRLDQNQISS--IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred cCCCcccCcccCCCcceEEEeccCCccc--CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 3477888999999999999999999985 3567899999999999999999999999999 88887777666 899998
Q ss_pred CchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccC
Q 036984 97 FPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLS 176 (603)
Q Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~ 176 (603)
..+.|.++..|+.|.+.-|++.-+..++|..+++|..|.+.+|.+. .++...|..+..++.+.+..|++.......++.
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhh
Confidence 8889999999999999999998888889999999999999999997 677778999999999999999865443322221
Q ss_pred CCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccC-CCCCEEEcCCCcccCCCCCCCccccccCC
Q 036984 177 NLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQ-HDLKNADLSHLNLSGEFPNWLMPIHCLQK 255 (603)
Q Consensus 177 ~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~~~~l~~ 255 (603)
.-.... . ..+..........+.+.++....+..+... ..+..--.+.+...+..|.. .|..+++
T Consensus 211 ~~~a~~------~-------ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~--cf~~L~~ 275 (498)
T KOG4237|consen 211 DDLAMN------P-------IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK--CFKKLPN 275 (498)
T ss_pred hHHhhc------h-------hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH--HHhhccc
Confidence 100000 0 000111122222233333322222222211 11111122233333344432 2778999
Q ss_pred ccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCC
Q 036984 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLK 335 (603)
Q Consensus 256 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 335 (603)
|+.|++++|.++ .|....|++...++.|.|..|++..++...|. ++..|+.|+|.+|+|+...|.+|..+.
T Consensus 276 L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~--------~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 276 LRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ--------GLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred ceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhh--------ccccceeeeecCCeeEEEecccccccc
Confidence 999999999998 78788888899999999999998877754444 488999999999999999999999999
Q ss_pred CCCEEecCCCcCcc
Q 036984 336 EVRLIDLSHNNLSG 349 (603)
Q Consensus 336 ~L~~L~Ls~n~l~~ 349 (603)
+|.+|++-.|++..
T Consensus 347 ~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 347 SLSTLNLLSNPFNC 360 (498)
T ss_pred eeeeeehccCcccC
Confidence 99999999999863
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.4e-23 Score=236.67 Aligned_cols=361 Identities=19% Similarity=0.227 Sum_probs=219.4
Q ss_pred CcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCC------CCccCccc--CCCCCEEEccCCCCCcCCchhhcCCC
Q 036984 34 LRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLR------DSLLGAWQ--TTSLQELNVASNKLTRNFPLGLCELV 105 (603)
Q Consensus 34 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (603)
.+.+.+....+....+...+|.++++|+.|.+..+... ...+..|. ..+|+.|.+.++.+.. .|..| ...
T Consensus 534 v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~ 611 (1153)
T PLN03210 534 VLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RPE 611 (1153)
T ss_pred eeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-Ccc
Confidence 33333433334333344567888888888888665321 12233333 4568888888888776 56656 467
Q ss_pred CCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceee
Q 036984 106 LLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFN 185 (603)
Q Consensus 106 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~ 185 (603)
+|+.|++++|.+. .+|..+..+++|+.|+|+++.....+|. +..+++|++|++++|......+ ..+.
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp-~si~--------- 678 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP-SSIQ--------- 678 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc-hhhh---------
Confidence 8888888888887 5677788888888888887754445665 7778888888888875322211 1122
Q ss_pred ccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcc
Q 036984 186 GEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNF 265 (603)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~ 265 (603)
.+.+|+.|++++|.....+|..+ .+++|+.|++++|...+.+|.. .++|+.|++++|.
T Consensus 679 ---------------~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~------~~nL~~L~L~~n~ 736 (1153)
T PLN03210 679 ---------------YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI------STNISWLDLDETA 736 (1153)
T ss_pred ---------------ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc------cCCcCeeecCCCc
Confidence 23366666776665545555544 5677788888777655555542 3567788888887
Q ss_pred ccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCC
Q 036984 266 FQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345 (603)
Q Consensus 266 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 345 (603)
+. .+|..+ .+++|+.|++.++....+... +....+......++|+.|++++|.....+|..++.+++|+.|++++|
T Consensus 737 i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~-~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 737 IE-EFPSNL--RLENLDELILCEMKSEKLWER-VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred cc-cccccc--cccccccccccccchhhcccc-ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 76 666544 266777777766443222211 11111222233467888888887766677777888888888888877
Q ss_pred cCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCc
Q 036984 346 NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTR 425 (603)
Q Consensus 346 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 425 (603)
...+.+|... .+++|+.|++++|.....+|.. .++
T Consensus 813 ~~L~~LP~~~------------------------------------------~L~sL~~L~Ls~c~~L~~~p~~---~~n 847 (1153)
T PLN03210 813 INLETLPTGI------------------------------------------NLESLESLDLSGCSRLRTFPDI---STN 847 (1153)
T ss_pred CCcCeeCCCC------------------------------------------CccccCEEECCCCCcccccccc---ccc
Confidence 6544444211 2456666666665443333322 245
Q ss_pred CCEEecccccccccCCcCCcCCCCCCEEeCCCC-cCcccCC-CccCCCCCCceecccCc
Q 036984 426 IRALNLSHNNLTGTIPITFSNLKQIESLDLSYN-LLHGKIP-QLIVLTTLAVFRVAYNN 482 (603)
Q Consensus 426 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~l~~L~~L~l~~N~ 482 (603)
|+.|+|++|.++ .+|..+..+++|+.|++++| ++. .+| ....+++|+.+++++|.
T Consensus 848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 666666666666 45556666666666666663 333 333 45556666666666553
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.7e-22 Score=231.82 Aligned_cols=339 Identities=22% Similarity=0.260 Sum_probs=235.7
Q ss_pred HhcCCCcEEEccCCcCCCC----CCCccccCCCC-CCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcC
Q 036984 29 ELMASLRLLSLSYSRLNKN----TILDQGFCQLV-HLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCE 103 (603)
Q Consensus 29 ~~~~~L~~L~Ls~n~i~~~----~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 103 (603)
..+++|+.|.+..+..... ...+..|..++ +|+.|++.++.+..+|.. |.+.+|++|++++|++.. ++..+..
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f~~~~L~~L~L~~s~l~~-L~~~~~~ 632 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-FRPENLVKLQMQGSKLEK-LWDGVHS 632 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-CCccCCcEEECcCccccc-ccccccc
Confidence 3478888888866543210 11344565654 588888888888777554 457888888888888776 5666788
Q ss_pred CCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCce
Q 036984 104 LVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKA 183 (603)
Q Consensus 104 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~ 183 (603)
+++|+.|+|+++.....+|. +..+++|++|++++|.....+|. .+..+++|+.|++++|......+..
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~---------- 700 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTG---------- 700 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCc----------
Confidence 88888888887754435553 77788888888888766556776 6788888888888876422111110
Q ss_pred eeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccC
Q 036984 184 FNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSN 263 (603)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~ 263 (603)
..+.+|+.|++++|.....+|.. ..+|+.|++++|.+. .+|.. ..+++|+.|++.+
T Consensus 701 ----------------i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~----~~l~~L~~L~l~~ 756 (1153)
T PLN03210 701 ----------------INLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN----LRLENLDELILCE 756 (1153)
T ss_pred ----------------CCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc----ccccccccccccc
Confidence 01236667777776554444432 356788888888775 45553 2467777787776
Q ss_pred cccc---c---cCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCC
Q 036984 264 NFFQ---G---HIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEV 337 (603)
Q Consensus 264 n~~~---~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 337 (603)
+... + .++...+...++|+.|++++|... +.+|..++++++|+.|++++|...+.+|... .+++|
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l--------~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL 827 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL--------VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL 827 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCc--------cccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccccc
Confidence 4321 0 122222333568899888877532 2568888899999999999876544666554 68899
Q ss_pred CEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCc
Q 036984 338 RLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIP 417 (603)
Q Consensus 338 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 417 (603)
+.|++++|.....+|. .+++|+.|+|++|.++ .+|
T Consensus 828 ~~L~Ls~c~~L~~~p~--------------------------------------------~~~nL~~L~Ls~n~i~-~iP 862 (1153)
T PLN03210 828 ESLDLSGCSRLRTFPD--------------------------------------------ISTNISDLNLSRTGIE-EVP 862 (1153)
T ss_pred CEEECCCCCccccccc--------------------------------------------cccccCEeECCCCCCc-cCh
Confidence 9999999865433331 1357889999999998 678
Q ss_pred hhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCc
Q 036984 418 TQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNL 459 (603)
Q Consensus 418 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 459 (603)
..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 863 ~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 863 WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 889999999999999854444677778889999999999985
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=7e-24 Score=198.80 Aligned_cols=312 Identities=21% Similarity=0.179 Sum_probs=197.7
Q ss_pred EEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEccc-Cc
Q 036984 62 ELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY-NQ 140 (603)
Q Consensus 62 ~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~ 140 (603)
..+.++-.++.+|... .+.-..++|..|+|+.+.+.+|..+++|+.|||++|+|+.+.|++|.++++|..|-+.+ |+
T Consensus 50 ~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred eEEccCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 4456666677776655 56778889999999998888999999999999999999999999999999888887777 88
Q ss_pred CCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcC
Q 036984 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFP 220 (603)
Q Consensus 141 i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 220 (603)
|+ .+|.++|.++.+++-|.+.-|++.+.. .
T Consensus 128 I~-~l~k~~F~gL~slqrLllNan~i~Cir-------------------------------------------------~ 157 (498)
T KOG4237|consen 128 IT-DLPKGAFGGLSSLQRLLLNANHINCIR-------------------------------------------------Q 157 (498)
T ss_pred hh-hhhhhHhhhHHHHHHHhcChhhhcchh-------------------------------------------------H
Confidence 88 688888888888888877776654111 1
Q ss_pred hhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCc
Q 036984 221 KFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQ 300 (603)
Q Consensus 221 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 300 (603)
.. +..++++..|.+..|.+. .++...+..+.+++.+++..|.+...-
T Consensus 158 ~a---------------------------l~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdC----- 204 (498)
T KOG4237|consen 158 DA---------------------------LRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDC----- 204 (498)
T ss_pred HH---------------------------HHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccccc-----
Confidence 11 344566677777777776 777777777888888888877653211
Q ss_pred ccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCe
Q 036984 301 GSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPAL 380 (603)
Q Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (603)
+++.+..... ..+..+++.....-..+.+.++...-+.-+..
T Consensus 205 --------nL~wla~~~a-------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c----------------------- 246 (498)
T KOG4237|consen 205 --------NLPWLADDLA-------MNPIETSGARCVSPYRLYYKRINQEDARKFLC----------------------- 246 (498)
T ss_pred --------ccchhhhHHh-------hchhhcccceecchHHHHHHHhcccchhhhhh-----------------------
Confidence 1222221111 12222333333333334444443111111000
Q ss_pred eEEecCCCCCCcchhhhhcccce-EEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCc
Q 036984 381 SYFSPNGSPMGKEETVQILTSMS-GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNL 459 (603)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 459 (603)
...++. .+.-.++.....+..+|..+++|+.|+|++|+|+++-+.+|.+...+++|.|..|+
T Consensus 247 -----------------~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 247 -----------------SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred -----------------hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 001111 11112222222223456777777777777777776666777777777777777777
Q ss_pred CcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCC
Q 036984 460 LHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPL 513 (603)
Q Consensus 460 l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~ 513 (603)
|...-. .|..+..|+.|+|.+|++++..|..|..+..+..+.+-+|||.|.|.+
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 763333 566677777777777777777777777777777777777777776544
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=6.6e-21 Score=203.10 Aligned_cols=74 Identities=35% Similarity=0.402 Sum_probs=43.7
Q ss_pred CCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEc
Q 036984 82 SLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELIL 161 (603)
Q Consensus 82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l 161 (603)
.-..|+++++.++. +|..+. ++|+.|++++|+++. +|. .+++|++|++++|+++ .+|. ..++|++|++
T Consensus 202 ~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----cccccceeec
Confidence 35566777776664 455443 356777777776663 343 2356777777777666 3443 1356666666
Q ss_pred cCceee
Q 036984 162 SNNHFQ 167 (603)
Q Consensus 162 ~~n~~~ 167 (603)
++|.+.
T Consensus 270 s~N~L~ 275 (788)
T PRK15387 270 FSNPLT 275 (788)
T ss_pred cCCchh
Confidence 666554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.6e-20 Score=200.09 Aligned_cols=95 Identities=22% Similarity=0.249 Sum_probs=62.8
Q ss_pred CCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcc
Q 036984 58 VHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVS 137 (603)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 137 (603)
..-..|+++++.++.+|+.. .++|+.|++++|+++. +|. ..++|++|++++|+++. +|.. .++|+.|+++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l--~~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch--hcCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 44567778877777766644 3467778888887776 443 24678888888888774 4432 3577788888
Q ss_pred cCcCCccCCcccccCCCCCcEEEccCceee
Q 036984 138 YNQLTESISSSPLMLLTSIEELILSNNHFQ 167 (603)
Q Consensus 138 ~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~ 167 (603)
+|.+. .+|. . ..+|+.|++++|+++
T Consensus 271 ~N~L~-~Lp~-l---p~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 271 SNPLT-HLPA-L---PSGLCKLWIFGNQLT 295 (788)
T ss_pred CCchh-hhhh-c---hhhcCEEECcCCccc
Confidence 88776 3444 1 245667777777654
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2.7e-18 Score=184.57 Aligned_cols=75 Identities=25% Similarity=0.380 Sum_probs=34.0
Q ss_pred CCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccC
Q 036984 60 LQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN 139 (603)
Q Consensus 60 L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 139 (603)
...|+++++.++.+|... .++|+.|++++|+++. +|..+. .+|++|++++|+++ .+|..+. ++|+.|++++|
T Consensus 180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKILGLTTIPACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCC
Confidence 445555555555444322 2345555555555554 233222 24555555555554 2333322 24555555555
Q ss_pred cCC
Q 036984 140 QLT 142 (603)
Q Consensus 140 ~i~ 142 (603)
.+.
T Consensus 252 ~L~ 254 (754)
T PRK15370 252 RIT 254 (754)
T ss_pred ccC
Confidence 544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=4.1e-18 Score=183.19 Aligned_cols=246 Identities=25% Similarity=0.411 Sum_probs=131.9
Q ss_pred CCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceee
Q 036984 106 LLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFN 185 (603)
Q Consensus 106 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~ 185 (603)
+...|++++++++ .+|..+. +.|+.|++++|.++ .+|... ..+|++|++++|.++.. +.
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l---~~nL~~L~Ls~N~LtsL-P~------------- 237 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENL---QGNIKTLYANSNQLTSI-PA------------- 237 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhh---ccCCCEEECCCCccccC-Ch-------------
Confidence 4555666666655 3444332 35666666666665 344421 13566666666554310 00
Q ss_pred ccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcc
Q 036984 186 GEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNF 265 (603)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~ 265 (603)
.+ ..+|+.|++++|.+. .+|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|.
T Consensus 238 ------------~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l-----~~sL~~L~Ls~N~ 294 (754)
T PRK15370 238 ------------TL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL-----PEELRYLSVYDNS 294 (754)
T ss_pred ------------hh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc-----CCCCcEEECCCCc
Confidence 00 014455555555544 2333332 35677777777665 345431 2467777777777
Q ss_pred ccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCC
Q 036984 266 FQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345 (603)
Q Consensus 266 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 345 (603)
++ .+|..+. ++|+.|++++|.+..+ |..+ .++|+.|++++|.++. +|..+. ++|+.|++++|
T Consensus 295 Lt-~LP~~lp---~sL~~L~Ls~N~Lt~L---------P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N 356 (754)
T PRK15370 295 IR-TLPAHLP---SGITHLNVQSNSLTAL---------PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKN 356 (754)
T ss_pred cc-cCcccch---hhHHHHHhcCCccccC---------Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCC
Confidence 76 4554332 3566666666655432 2111 2466777777777664 443332 56777777777
Q ss_pred cCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCc
Q 036984 346 NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTR 425 (603)
Q Consensus 346 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 425 (603)
+++ .+|.. .+++|+.|++++|.++ .+|..+. ..
T Consensus 357 ~L~-~LP~~-------------------------------------------lp~~L~~LdLs~N~Lt-~LP~~l~--~s 389 (754)
T PRK15370 357 QIT-VLPET-------------------------------------------LPPTITTLDVSRNALT-NLPENLP--AA 389 (754)
T ss_pred CCC-cCChh-------------------------------------------hcCCcCEEECCCCcCC-CCCHhHH--HH
Confidence 665 23311 1245677777777776 3444443 35
Q ss_pred CCEEecccccccccCCcCC----cCCCCCCEEeCCCCcCc
Q 036984 426 IRALNLSHNNLTGTIPITF----SNLKQIESLDLSYNLLH 461 (603)
Q Consensus 426 L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~Ls~N~l~ 461 (603)
|+.|++++|+++ .+|..+ ..++.+..|++.+|+++
T Consensus 390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 677777777776 444433 33456677777777765
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=8.5e-19 Score=175.39 Aligned_cols=60 Identities=20% Similarity=0.322 Sum_probs=33.2
Q ss_pred ccceEEECcCCCCcc----cCchhccCcCcCCEEeccccccccc----CCcCCcCC-CCCCEEeCCCCc
Q 036984 400 TSMSGIDLSCNKLTG----EIPTQIGYLTRIRALNLSHNNLTGT----IPITFSNL-KQIESLDLSYNL 459 (603)
Q Consensus 400 ~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~Ls~N~ 459 (603)
+.|+.|++++|.+++ .+...+..+++|+++++++|.++.. ....+... +.|++||+.+|+
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 456666666666642 1223444556666777777766643 22333333 567777777665
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1.7e-18 Score=173.29 Aligned_cols=287 Identities=22% Similarity=0.242 Sum_probs=159.5
Q ss_pred eecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCC--CCccccCCCCCCCEEEccCCcCCCCc------cCccc-
Q 036984 9 HLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNT--ILDQGFCQLVHLQELYIRDNDLRDSL------LGAWQ- 79 (603)
Q Consensus 9 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~------~~~~~- 79 (603)
.|+|+++.+. ...+...+.. ++.|+.|+++++.++... ..+..+...+++++++++++.+...+ +..+.
T Consensus 2 ~l~L~~~~l~-~~~~~~~~~~-l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLK-TERATELLPK-LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCccc-ccchHHHHHH-HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 4566665554 2333333323 566888888888775421 12334566777888888887765311 12233
Q ss_pred CCCCCEEEccCCCCCcCCchhhcCCCC---CcEEeccCCCCcc----CcCccCCCC-CCCCEEEcccCcCCcc----CCc
Q 036984 80 TTSLQELNVASNKLTRNFPLGLCELVL---LRELYIDNNDLSG----SLPLCLTNL-TSLQVLDVSYNQLTES----ISS 147 (603)
Q Consensus 80 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~n~i~~----~~~~~~~~l-~~L~~L~L~~n~i~~~----~~~ 147 (603)
+++|++|++++|.+....+..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 567777777777766544554544444 7777777776652 122234445 6666666666666521 111
Q ss_pred ccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCC
Q 036984 148 SPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQH 227 (603)
Q Consensus 148 ~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 227 (603)
.+..+++|++|++++|.+..... ..++..+..++
T Consensus 160 -~~~~~~~L~~L~l~~n~l~~~~~---------------------------------------------~~l~~~l~~~~ 193 (319)
T cd00116 160 -ALRANRDLKELNLANNGIGDAGI---------------------------------------------RALAEGLKANC 193 (319)
T ss_pred -HHHhCCCcCEEECcCCCCchHHH---------------------------------------------HHHHHHHHhCC
Confidence 23444555666655554431000 01122334445
Q ss_pred CCCEEEcCCCcccCCCCCCC-ccccccCCccEEEccCccccccCChhhhhc----CCCCcEEecCCCCcccccCCcCccc
Q 036984 228 DLKNADLSHLNLSGEFPNWL-MPIHCLQKLATLDVSNNFFQGHIPVEIGTY----LPGLMHLNLSRNAFNDLSYNRLQGS 302 (603)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~----l~~L~~L~L~~n~l~~l~~~~~~~~ 302 (603)
+|+.|++++|.+.+.....+ ..+..+++|++|++++|.+.+.....+... .+.|+.|++++|.+.+.+.. .
T Consensus 194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~----~ 269 (319)
T cd00116 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK----D 269 (319)
T ss_pred CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH----H
Confidence 67777777776653221110 113456778888888887764222222222 36788888888776533221 2
Q ss_pred CCccccCCCCCCEEeccCCcCccc----CCccccCC-CCCCEEecCCCcC
Q 036984 303 IPNWIDRLPQISYLLLANNYIEGE----IPAQLCQL-KEVRLIDLSHNNL 347 (603)
Q Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~Ls~n~l 347 (603)
+...+..+++|+++++++|.++.. ....+... +.|+.+++.+|++
T Consensus 270 l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 270 LAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 223344457888888888888754 33344445 6788888888764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.1e-18 Score=143.85 Aligned_cols=185 Identities=25% Similarity=0.408 Sum_probs=144.9
Q ss_pred ccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCc
Q 036984 250 IHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPA 329 (603)
Q Consensus 250 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 329 (603)
+..+..++.|.+|+|+++ .+|+.+.. +.+|+.|++++|++. .+|..++.+++|+.|++.-|++. +.|.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie---------~lp~~issl~klr~lnvgmnrl~-~lpr 96 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE---------ELPTSISSLPKLRILNVGMNRLN-ILPR 96 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh---------hcChhhhhchhhhheecchhhhh-cCcc
Confidence 345677888899999998 88888887 789999999888886 44677888999999999999987 7889
Q ss_pred cccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcC
Q 036984 330 QLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSC 409 (603)
Q Consensus 330 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 409 (603)
.|+.++.|+.||+++|++.. ....+.|-.++.|+.|+|++
T Consensus 97 gfgs~p~levldltynnl~e----------------------------------------~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNE----------------------------------------NSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred ccCCCchhhhhhcccccccc----------------------------------------ccCCcchhHHHHHHHHHhcC
Confidence 99999999999999999863 11223344577888899999
Q ss_pred CCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCC---CCCCceecccCccccc
Q 036984 410 NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVL---TTLAVFRVAYNNLSGK 486 (603)
Q Consensus 410 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l---~~L~~L~l~~N~l~~~ 486 (603)
|.+. .+|..++.+++|+.|.+.+|.+. .+|..++.+..|++|++.+|+++-.+|.++.+ .+=+.+.+.+|+...+
T Consensus 137 ndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 137 NDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred CCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 9998 77778899999999999999988 78888999999999999999998555555443 2334455555555544
Q ss_pred CC
Q 036984 487 IP 488 (603)
Q Consensus 487 ~p 488 (603)
|.
T Consensus 215 Ia 216 (264)
T KOG0617|consen 215 IA 216 (264)
T ss_pred HH
Confidence 43
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=6.8e-17 Score=134.84 Aligned_cols=111 Identities=26% Similarity=0.444 Sum_probs=80.5
Q ss_pred cCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCE
Q 036984 54 FCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQV 133 (603)
Q Consensus 54 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 133 (603)
+-++.+.+.|.||+|.++.++|.+-.+.+|+.|++++|+++. .|..++.++.|+.|++.-|++. +.|..|+.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 345566777778888888777777667788888888888776 6677778888888888877776 67778888888888
Q ss_pred EEcccCcCCccCCcccccCCCCCcEEEccCcee
Q 036984 134 LDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166 (603)
Q Consensus 134 L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~ 166 (603)
|||..|.+.+..-++.|..+..|+.|+++.|.+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence 888877776543333566666666666666654
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.56 E-value=1.1e-14 Score=156.52 Aligned_cols=118 Identities=33% Similarity=0.560 Sum_probs=107.6
Q ss_pred cceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecc
Q 036984 401 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVA 479 (603)
Q Consensus 401 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~ 479 (603)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.||+++|++++.+| .+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999 78999999999999
Q ss_pred cCcccccCCCccccc-CCCCcccccCCcCCCCCCCCCCCC
Q 036984 480 YNNLSGKIPDRVAQF-STFEEDSYEGNPFLYGQPLSKSCD 518 (603)
Q Consensus 480 ~N~l~~~~p~~~~~l-~~l~~~~l~gn~~~c~~~~~~~C~ 518 (603)
+|++++.+|..+... ..+..+++.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999887664 456778999999999877655663
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.9e-12 Score=124.30 Aligned_cols=213 Identities=23% Similarity=0.317 Sum_probs=144.9
Q ss_pred ccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCC-hhhhhcCCCCcEEecCCCCcccccCCcCccc
Q 036984 224 YHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIP-VEIGTYLPGLMHLNLSRNAFNDLSYNRLQGS 302 (603)
Q Consensus 224 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~ 302 (603)
.++.+|+++.|.++.+...... .....+++++.|||+.|-+..-.+ ..+.+.+|+|+.|+++.|.+.....+..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~- 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL- 194 (505)
T ss_pred hhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh-
Confidence 3455667777776655322111 114567888888888887653222 234555888999998888876555444443
Q ss_pred CCccccCCCCCCEEeccCCcCccc-CCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCee
Q 036984 303 IPNWIDRLPQISYLLLANNYIEGE-IPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALS 381 (603)
Q Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (603)
.++.|+.|.+++|.++.. +......+++|+.|++..|...
T Consensus 195 ------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~--------------------------------- 235 (505)
T KOG3207|consen 195 ------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII--------------------------------- 235 (505)
T ss_pred ------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc---------------------------------
Confidence 357888999999888632 3344567889999999988522
Q ss_pred EEecCCCCCCcchhhhhcccceEEECcCCCCcccCc-hhccCcCcCCEEeccccccccc-CCcC-----CcCCCCCCEEe
Q 036984 382 YFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIP-TQIGYLTRIRALNLSHNNLTGT-IPIT-----FSNLKQIESLD 454 (603)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~-~~~~-----~~~l~~L~~L~ 454 (603)
.........+..|++|||++|++.+... ...+.++.|+.|+++.+.+..+ .|+. ....++|+.|+
T Consensus 236 --------~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~ 307 (505)
T KOG3207|consen 236 --------LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLN 307 (505)
T ss_pred --------ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeee
Confidence 1122233456788999999998764431 3467788999999999998854 2332 34568899999
Q ss_pred CCCCcCcccCC--CccCCCCCCceecccCccccc
Q 036984 455 LSYNLLHGKIP--QLIVLTTLAVFRVAYNNLSGK 486 (603)
Q Consensus 455 Ls~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~ 486 (603)
++.|+|..... .+..+++|+.|.+..|.+..+
T Consensus 308 i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 308 ISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cccCccccccccchhhccchhhhhhccccccccc
Confidence 99999974322 677788999999999988754
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=4.8e-13 Score=132.28 Aligned_cols=171 Identities=30% Similarity=0.533 Sum_probs=109.4
Q ss_pred CccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCC
Q 036984 255 KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQL 334 (603)
Q Consensus 255 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 334 (603)
--...|++.|++. .+|..+.. +-.|+.+.+..|.+. .+|..+.++..|++++++.|+++ ..|..++.+
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r---------~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l 143 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR---------TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL 143 (722)
T ss_pred chhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce---------ecchhhhhhhHHHHhhhccchhh-cCChhhhcC
Confidence 3455677777776 66665544 446666666666554 45666667777777777777776 556666665
Q ss_pred CCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcc
Q 036984 335 KEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG 414 (603)
Q Consensus 335 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 414 (603)
+ |+.|-+++|+++ .+|..++ ....|..||.+.|++.
T Consensus 144 p-Lkvli~sNNkl~-~lp~~ig-----------------------------------------~~~tl~~ld~s~nei~- 179 (722)
T KOG0532|consen 144 P-LKVLIVSNNKLT-SLPEEIG-----------------------------------------LLPTLAHLDVSKNEIQ- 179 (722)
T ss_pred c-ceeEEEecCccc-cCCcccc-----------------------------------------cchhHHHhhhhhhhhh-
Confidence 5 777777777775 3332221 2456666777777776
Q ss_pred cCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCccc
Q 036984 415 EIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLS 484 (603)
Q Consensus 415 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~ 484 (603)
.+|..+.++.+|+.|++..|++. .+|..+..+ .|..||+|+|+++ .+| .|..++.|++|-|.+|+++
T Consensus 180 slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 180 SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 55566677777777777777776 445555533 3666777777777 555 6777777777777777766
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=2.6e-12 Score=117.34 Aligned_cols=106 Identities=21% Similarity=0.287 Sum_probs=65.2
Q ss_pred cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceec
Q 036984 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRV 478 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l 478 (603)
.+.++.|++|+|.+. .+. .++.+++|.+||||+|.++ .+..+-.++.+++.|.++.|.|. ...++..+-+|..||+
T Consensus 306 ~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDL 381 (490)
T ss_pred ccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhhhhHhhhhheeccc
Confidence 456666677776666 322 2666667777777777666 33344445566667777777665 4445566666777777
Q ss_pred ccCcccccC-CCcccccCCCCcccccCCcCC
Q 036984 479 AYNNLSGKI-PDRVAQFSTFEEDSYEGNPFL 508 (603)
Q Consensus 479 ~~N~l~~~~-p~~~~~l~~l~~~~l~gn~~~ 508 (603)
++|++.... -..++.+++++.+.+.+||.-
T Consensus 382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 777665421 134566777777777777653
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=1.8e-11 Score=107.58 Aligned_cols=122 Identities=25% Similarity=0.331 Sum_probs=35.1
Q ss_pred CCCCCEEeccCCcCcccCCcccc-CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCC
Q 036984 310 LPQISYLLLANNYIEGEIPAQLC-QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGS 388 (603)
Q Consensus 310 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (603)
..++++|+|++|.|+.+ +.++ .+.+|+.|++++|.++.
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~--------------------------------------- 56 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK--------------------------------------- 56 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----------------------------------------
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc---------------------------------------
Confidence 34566667776666643 1233 45666777777776651
Q ss_pred CCCcchhhhhcccceEEECcCCCCcccCchhc-cCcCcCCEEecccccccccCC-cCCcCCCCCCEEeCCCCcCcccCC-
Q 036984 389 PMGKEETVQILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIP-ITFSNLKQIESLDLSYNLLHGKIP- 465 (603)
Q Consensus 389 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~- 465 (603)
...+..++.|++|++++|.|+. +...+ ..+++|++|++++|+|..... ..+..+++|+.|++.+|+++....
T Consensus 57 ----l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y 131 (175)
T PF14580_consen 57 ----LEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY 131 (175)
T ss_dssp -----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH
T ss_pred ----ccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH
Confidence 1123335566666666666663 32233 346666666666666653211 234556666666666666663322
Q ss_pred ---CccCCCCCCcee
Q 036984 466 ---QLIVLTTLAVFR 477 (603)
Q Consensus 466 ---~~~~l~~L~~L~ 477 (603)
.+..+|+|+.||
T Consensus 132 R~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 132 RLFVIYKLPSLKVLD 146 (175)
T ss_dssp HHHHHHH-TT-SEET
T ss_pred HHHHHHHcChhheeC
Confidence 233455555554
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=3.6e-11 Score=123.75 Aligned_cols=178 Identities=34% Similarity=0.543 Sum_probs=86.9
Q ss_pred CCccEEEccCccccccCChhhhhcCC-CCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCcccc
Q 036984 254 QKLATLDVSNNFFQGHIPVEIGTYLP-GLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLC 332 (603)
Q Consensus 254 ~~L~~L~Ls~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 332 (603)
+.++.+++.+|.++ .++..... .+ +|+.|++++|.+.++ |..++.++.|+.|++++|+++ .++....
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~~l---------~~~~~~l~~L~~L~l~~N~l~-~l~~~~~ 183 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIESL---------PSPLRNLPNLKNLDLSFNDLS-DLPKLLS 183 (394)
T ss_pred cceeEEecCCcccc-cCcccccc-chhhcccccccccchhhh---------hhhhhccccccccccCCchhh-hhhhhhh
Confidence 44555555555555 44443332 32 555555555555432 233444555555555555555 2332333
Q ss_pred CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCC
Q 036984 333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL 412 (603)
Q Consensus 333 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 412 (603)
..+.|+.|++++|++. .+|... ..+..|+++.+++|.+
T Consensus 184 ~~~~L~~L~ls~N~i~-~l~~~~-----------------------------------------~~~~~L~~l~~~~N~~ 221 (394)
T COG4886 184 NLSNLNNLDLSGNKIS-DLPPEI-----------------------------------------ELLSALEELDLSNNSI 221 (394)
T ss_pred hhhhhhheeccCCccc-cCchhh-----------------------------------------hhhhhhhhhhhcCCcc
Confidence 4555566666666554 222110 1123355555555543
Q ss_pred cccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCC
Q 036984 413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIP 488 (603)
Q Consensus 413 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p 488 (603)
. ..+..+..+.++..+.+++|++. ..+..+..+++++.|++++|.++ .++.+..+.+++.|++++|.++...|
T Consensus 222 ~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 222 I-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred e-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-ccccccccCccCEEeccCccccccch
Confidence 3 33344555555555555555555 22444455555555555555555 33335555555555555555554444
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=1e-11 Score=113.42 Aligned_cols=131 Identities=25% Similarity=0.285 Sum_probs=106.9
Q ss_pred CCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCC
Q 036984 310 LPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSP 389 (603)
Q Consensus 310 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (603)
...|+++||++|.|+ .+.++..-.+.++.|++|+|.+..
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~---------------------------------------- 321 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT---------------------------------------- 321 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceee----------------------------------------
Confidence 467999999999998 566777888999999999999862
Q ss_pred CCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC--Cc
Q 036984 390 MGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP--QL 467 (603)
Q Consensus 390 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~ 467 (603)
......+++|+.||||+|.++ .....-..+-+++.|.|+.|.|... +.+.++-+|..||+++|+|..... .+
T Consensus 322 ---v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~I 395 (490)
T KOG1259|consen 322 ---VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHI 395 (490)
T ss_pred ---ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhccc
Confidence 122556889999999999998 4433345677899999999999743 457788899999999999985444 78
Q ss_pred cCCCCCCceecccCcccccC
Q 036984 468 IVLTTLAVFRVAYNNLSGKI 487 (603)
Q Consensus 468 ~~l~~L~~L~l~~N~l~~~~ 487 (603)
.++|.|+.+.|.+|++.+..
T Consensus 396 G~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 396 GNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ccccHHHHHhhcCCCccccc
Confidence 89999999999999999543
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=7.3e-12 Score=120.37 Aligned_cols=219 Identities=20% Similarity=0.164 Sum_probs=115.8
Q ss_pred CCCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc--C
Q 036984 3 EFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ--T 80 (603)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~ 80 (603)
++++||.+.|+++.......- .+ ...|++++.||||+|-+........-...+|+|+.|+++.|.+......... +
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~-~~-~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIE-EY-SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchh-hh-hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 355666666666554433221 22 2336666777777666654333333345666666777766665433332222 5
Q ss_pred CCCCEEEccCCCCCcC-CchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEE
Q 036984 81 TSLQELNVASNKLTRN-FPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEEL 159 (603)
Q Consensus 81 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L 159 (603)
++|+.|.++.|.++.. +-.....+|+|+.|+|..|....+......-+..|+.|+|++|.+...-.....+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 6666666666666521 112234556666666666632223333344455666666666665532111134555666666
Q ss_pred EccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCC-CcChhhccCCCCCEEEcCCCc
Q 036984 160 ILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDG-TFPKFLYHQHDLKNADLSHLN 238 (603)
Q Consensus 160 ~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~ 238 (603)
+++.+.+...-.. . ..........++|+.|++..|.+.. .....+..+++|+.|.+..|.
T Consensus 277 nls~tgi~si~~~-d------------------~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 277 NLSSTGIASIAEP-D------------------VESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hccccCcchhcCC-C------------------ccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 6666655411100 0 0000111234488889998888743 233456667788888888887
Q ss_pred ccCC
Q 036984 239 LSGE 242 (603)
Q Consensus 239 i~~~ 242 (603)
++..
T Consensus 338 ln~e 341 (505)
T KOG3207|consen 338 LNKE 341 (505)
T ss_pred cccc
Confidence 7643
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=3.9e-11 Score=105.51 Aligned_cols=111 Identities=29% Similarity=0.331 Sum_probs=27.4
Q ss_pred cCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccC-CCCCCCC
Q 036984 54 FCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCL-TNLTSLQ 132 (603)
Q Consensus 54 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~ 132 (603)
+.+..++++|+|++|.|+.+..-...+.+|++|++++|.++.+ +.+..+++|++|++++|.|+.. ...+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 3344455555666555555432211245556666666655542 2355556666666666666532 2222 2455666
Q ss_pred EEEcccCcCCccCCcccccCCCCCcEEEccCceee
Q 036984 133 VLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ 167 (603)
Q Consensus 133 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~ 167 (603)
+|++++|+|.+.-.-..+..+++|++|++.+|++.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 66666665543222224455566666666666554
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.11 E-value=4.1e-11 Score=131.65 Aligned_cols=151 Identities=26% Similarity=0.328 Sum_probs=117.9
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCc--CCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCC
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDND--LRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLL 107 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (603)
....++..+-+|.+... ..-..+++|++|-+..|. +..+..++|. ++.|++|||++|.-.+.+|..++.+.+|
T Consensus 522 ~~~~rr~s~~~~~~~~~----~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHI----AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred hhheeEEEEeccchhhc----cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 35678888888877532 123356689999999996 7888888888 9999999999987666799999999999
Q ss_pred cEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceee-eecCccccCCCCCCceeec
Q 036984 108 RELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ-IPISLEPLSNLSKLKAFNG 186 (603)
Q Consensus 108 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~l~~L~~L~~l~~ 186 (603)
|+|+++++.++ .+|..++++.+|.+|++..+.....++. ....+.+|++|.+...... .......+.+|+.|+.+..
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 99999999998 7999999999999999999876645544 6777999999999876522 1223344556666665554
Q ss_pred c
Q 036984 187 E 187 (603)
Q Consensus 187 ~ 187 (603)
.
T Consensus 676 ~ 676 (889)
T KOG4658|consen 676 T 676 (889)
T ss_pred e
Confidence 3
No 33
>PLN03150 hypothetical protein; Provisional
Probab=99.09 E-value=2.4e-10 Score=123.12 Aligned_cols=112 Identities=32% Similarity=0.490 Sum_probs=97.4
Q ss_pred CCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCccc
Q 036984 336 EVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE 415 (603)
Q Consensus 336 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 415 (603)
.++.|+|++|.+.+.+|..+. .+++|+.|+|++|.+.+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~-----------------------------------------~L~~L~~L~Ls~N~l~g~ 457 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDIS-----------------------------------------KLRHLQSINLSGNSIRGN 457 (623)
T ss_pred EEEEEECCCCCccccCCHHHh-----------------------------------------CCCCCCEEECCCCcccCc
Confidence 377889999999887775544 367999999999999999
Q ss_pred CchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccC-CCCCCceecccCcccccCC
Q 036984 416 IPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIV-LTTLAVFRVAYNNLSGKIP 488 (603)
Q Consensus 416 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~-l~~L~~L~l~~N~l~~~~p 488 (603)
+|..+..+++|+.|+|++|++++.+|+.++++++|+.|++++|++++.+| .+.. ...+..+++.+|...+..|
T Consensus 458 iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 458 IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999 5544 3567789999998766544
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=2.5e-10 Score=117.57 Aligned_cols=197 Identities=31% Similarity=0.481 Sum_probs=143.8
Q ss_pred EEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccC-CccEEEccCccccccCChhhhhcCCCCcEEe
Q 036984 207 SISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQ-KLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285 (603)
Q Consensus 207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ 285 (603)
.++...+.+... ...+...+.++.+++.+|.++...+. ..... +|+.|++++|.+. .+|..+.. +++|+.|+
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~----~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~ 169 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPL----IGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLD 169 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccc----cccchhhcccccccccchh-hhhhhhhc-cccccccc
Confidence 455555554222 22344457789999999998854443 33443 8999999999998 67644544 88999999
Q ss_pred cCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhccccccccc
Q 036984 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYY 365 (603)
Q Consensus 286 L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 365 (603)
+++|++.+++ ...+..+.|+.|++++|++. .+|........|+++.+++|++..
T Consensus 170 l~~N~l~~l~---------~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~---------------- 223 (394)
T COG4886 170 LSFNDLSDLP---------KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE---------------- 223 (394)
T ss_pred cCCchhhhhh---------hhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee----------------
Confidence 9999987654 33335789999999999998 555554566679999999996421
Q ss_pred CCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCc
Q 036984 366 DAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFS 445 (603)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 445 (603)
.......+..+..+.+.+|++. ..+..++.+++++.|++++|+++... . +.
T Consensus 224 --------------------------~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~-~-~~ 274 (394)
T COG4886 224 --------------------------LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSIS-S-LG 274 (394)
T ss_pred --------------------------cchhhhhcccccccccCCceee-eccchhccccccceeccccccccccc-c-cc
Confidence 1122344667777888888887 44667888889999999999999443 3 88
Q ss_pred CCCCCCEEeCCCCcCcccCC
Q 036984 446 NLKQIESLDLSYNLLHGKIP 465 (603)
Q Consensus 446 ~l~~L~~L~Ls~N~l~~~~~ 465 (603)
.+.+++.||+++|.++..+|
T Consensus 275 ~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 275 SLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccCccCEEeccCccccccch
Confidence 89999999999999986666
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=3.1e-12 Score=126.70 Aligned_cols=171 Identities=29% Similarity=0.480 Sum_probs=145.6
Q ss_pred CCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCC
Q 036984 289 NAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAV 368 (603)
Q Consensus 289 n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~ 368 (603)
..+.|++.|++. .+|..+..+..|+.+.+..|.+. .+|.+++.+..|+++||+.|+++ .+|..++.+
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l---------- 143 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL---------- 143 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC----------
Confidence 334556666665 67777777889999999999998 78889999999999999999997 555444432
Q ss_pred CCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCC
Q 036984 369 APTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLK 448 (603)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 448 (603)
-|+.|.+++|+++ .+|..++.+..|..|+.+.|.+. .+|..++++.
T Consensus 144 --------------------------------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~ 189 (722)
T KOG0532|consen 144 --------------------------------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT 189 (722)
T ss_pred --------------------------------cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH
Confidence 3788999999999 88888999999999999999999 7888899999
Q ss_pred CCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCC
Q 036984 449 QIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFL 508 (603)
Q Consensus 449 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~ 508 (603)
+|+.|.++.|++...++.+. .-.|..||+++|+++ .+|-.|..+..|+.+.+..||+.
T Consensus 190 slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 99999999999995555666 456899999999999 79988999999999999999974
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=1.9e-11 Score=114.44 Aligned_cols=138 Identities=19% Similarity=0.215 Sum_probs=82.2
Q ss_pred CCCCCEEeccCCcCcccC----CccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEec
Q 036984 310 LPQISYLLLANNYIEGEI----PAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSP 385 (603)
Q Consensus 310 l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (603)
-++|+++...+|++.+.. ...|...+.|+.+.++.|.+...--
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~--------------------------------- 202 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV--------------------------------- 202 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh---------------------------------
Confidence 356777777777665332 2345556677777777776641100
Q ss_pred CCCCCCcchhhhhcccceEEECcCCCCcccC----chhccCcCcCCEEecccccccccCCcCC-----cCCCCCCEEeCC
Q 036984 386 NGSPMGKEETVQILTSMSGIDLSCNKLTGEI----PTQIGYLTRIRALNLSHNNLTGTIPITF-----SNLKQIESLDLS 456 (603)
Q Consensus 386 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls 456 (603)
......+..+++|+.|||.+|-++... ...++.++.|++|++++|.+...-...| ...++|+.|++.
T Consensus 203 ----~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~ 278 (382)
T KOG1909|consen 203 ----TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA 278 (382)
T ss_pred ----HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence 011234555677777777777766432 3345566777777777777764333222 235677888888
Q ss_pred CCcCccc----CC-CccCCCCCCceecccCccc
Q 036984 457 YNLLHGK----IP-QLIVLTTLAVFRVAYNNLS 484 (603)
Q Consensus 457 ~N~l~~~----~~-~~~~l~~L~~L~l~~N~l~ 484 (603)
+|.|+.. +. .....+.|..|+|++|.+.
T Consensus 279 gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 279 GNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 8877632 11 3445777888888888773
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=3.2e-11 Score=112.87 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=115.1
Q ss_pred ccCCCCCCEEeccCCcCcccCCcc-------------ccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCc
Q 036984 307 IDRLPQISYLLLANNYIEGEIPAQ-------------LCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWD 373 (603)
Q Consensus 307 l~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (603)
+.++..|++|+|.+|.+...-... ...-+.|+.+...+|++-.. +.
T Consensus 116 l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~-ga-------------------- 174 (382)
T KOG1909|consen 116 LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG-GA-------------------- 174 (382)
T ss_pred HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc-cH--------------------
Confidence 344566666777666654222111 23347899999999998521 11
Q ss_pred CCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCccc----CchhccCcCcCCEEeccccccccc----CCcCCc
Q 036984 374 HASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE----IPTQIGYLTRIRALNLSHNNLTGT----IPITFS 445 (603)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~ 445 (603)
......++..+.|+.+.++.|.|... ....+..+++|+.|||.+|.++.. +...+.
T Consensus 175 ----------------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 175 ----------------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred ----------------HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 11234566678999999999988633 234678899999999999999853 345577
Q ss_pred CCCCCCEEeCCCCcCcccCC-----C-ccCCCCCCceecccCccccc----CCCcccccCCCCcccccCCcC
Q 036984 446 NLKQIESLDLSYNLLHGKIP-----Q-LIVLTTLAVFRVAYNNLSGK----IPDRVAQFSTFEEDSYEGNPF 507 (603)
Q Consensus 446 ~l~~L~~L~Ls~N~l~~~~~-----~-~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~l~~~~l~gn~~ 507 (603)
.+++|++|++++|.+..... . -...|+|+.+++.+|.++.. +-..+...+.+..+.++||.+
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 78899999999999985433 1 12378999999999998742 222234468889999999988
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=7.7e-10 Score=79.89 Aligned_cols=60 Identities=45% Similarity=0.587 Sum_probs=40.5
Q ss_pred cceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcC
Q 036984 401 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL 460 (603)
Q Consensus 401 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 460 (603)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566677777776655556666677777777777777666666667777777777776654
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.91 E-value=2.5e-10 Score=117.68 Aligned_cols=108 Identities=27% Similarity=0.261 Sum_probs=56.7
Q ss_pred hccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCccc
Q 036984 223 LYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGS 302 (603)
Q Consensus 223 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~ 302 (603)
+..+.+|+.+++..|.+...... +..+++|++|++++|.|+ .+... ..++.|+.|++++|.+.+++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~----l~~~~~L~~L~ls~N~I~-~i~~l--~~l~~L~~L~l~~N~i~~~~------- 156 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL----LSSLVNLQVLDLSFNKIT-KLEGL--STLTLLKELNLSGNLISDIS------- 156 (414)
T ss_pred cccccceeeeeccccchhhcccc----hhhhhcchheeccccccc-cccch--hhccchhhheeccCcchhcc-------
Confidence 44555566666666655533321 334566666666666665 22211 11445666666666655443
Q ss_pred CCccccCCCCCCEEeccCCcCcccCC-ccccCCCCCCEEecCCCcCc
Q 036984 303 IPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLS 348 (603)
Q Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~ 348 (603)
.+..++.|+.+++++|.+..+.+ . ...+.+++.+++.+|.+.
T Consensus 157 ---~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 157 ---GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ---CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 12225566666666666654433 1 345556666666666654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=9.7e-10 Score=79.36 Aligned_cols=59 Identities=36% Similarity=0.494 Sum_probs=26.9
Q ss_pred CCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc
Q 036984 82 SLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140 (603)
Q Consensus 82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 140 (603)
+|++|++++|++..+.+..|.++++|++|++++|.++...+.+|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444444333444444444444444444444444444444444444444443
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.74 E-value=4e-10 Score=114.94 Aligned_cols=113 Identities=27% Similarity=0.398 Sum_probs=84.6
Q ss_pred chhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCc-CCcCCCCCCEEeCCCCcCcccCCCccCCC
Q 036984 393 EETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPI-TFSNLKQIESLDLSYNLLHGKIPQLIVLT 471 (603)
Q Consensus 393 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 471 (603)
...++.++.++.|+|++|+++... .+..++.|++|||++|.+. .+|. ...++. |+.|.+++|.++ ..-++.++.
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL~gie~Lk 254 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TLRGIENLK 254 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hhhhHHhhh
Confidence 345566788889999999988432 6888899999999999988 4443 334444 899999999888 566788889
Q ss_pred CCCceecccCcccccCC-CcccccCCCCcccccCCcCCCC
Q 036984 472 TLAVFRVAYNNLSGKIP-DRVAQFSTFEEDSYEGNPFLYG 510 (603)
Q Consensus 472 ~L~~L~l~~N~l~~~~p-~~~~~l~~l~~~~l~gn~~~c~ 510 (603)
+|+.||+++|-+++-.. ..+..+..+..+.+.|||..|.
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 99999999998875221 1134456778889999998883
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.73 E-value=3.5e-10 Score=115.35 Aligned_cols=181 Identities=25% Similarity=0.304 Sum_probs=120.2
Q ss_pred ccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCccccc------CCcCcccCCccccCCCCCCEEeccCCcC
Q 036984 250 IHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS------YNRLQGSIPNWIDRLPQISYLLLANNYI 323 (603)
Q Consensus 250 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~------~~~~~~~~~~~l~~l~~L~~L~L~~n~l 323 (603)
+..+.+|+.|.+.++.+. .. .++...-..|++|.-. |.+..+. +..+. .-|.| -+|...+.++|.+
T Consensus 105 ifpF~sLr~LElrg~~L~-~~-~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~-ns~~W----n~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLS-TA-KGLQELRHQLEKLICH-NSLDALRHVFASCGGDIS-NSPVW----NKLATASFSYNRL 176 (1096)
T ss_pred eccccceeeEEecCcchh-hh-hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccc-cchhh----hhHhhhhcchhhH
Confidence 445678999999998886 32 1222111234444322 1111110 00111 11122 3677888888888
Q ss_pred cccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccce
Q 036984 324 EGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMS 403 (603)
Q Consensus 324 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 403 (603)
. ....++.-++.|+.|||++|+++. ...+.+++.|+
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~-------------------------------------------v~~Lr~l~~Lk 212 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTK-------------------------------------------VDNLRRLPKLK 212 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhh-------------------------------------------hHHHHhccccc
Confidence 7 566777888889999999998862 23567788999
Q ss_pred EEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC--CccCCCCCCceecccC
Q 036984 404 GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP--QLIVLTTLAVFRVAYN 481 (603)
Q Consensus 404 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~l~~N 481 (603)
.|||++|.+....--...++. |..|+|++|.++.. ..+.++.+|+.||+++|-|.+.-. .++.+..|+.|.|.+|
T Consensus 213 hLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 213 HLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 999999998833322333444 89999999998843 346788899999999998886444 5677888899999999
Q ss_pred cccc
Q 036984 482 NLSG 485 (603)
Q Consensus 482 ~l~~ 485 (603)
++-+
T Consensus 290 Pl~c 293 (1096)
T KOG1859|consen 290 PLCC 293 (1096)
T ss_pred cccc
Confidence 8863
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=6.9e-09 Score=114.34 Aligned_cols=107 Identities=26% Similarity=0.272 Sum_probs=85.7
Q ss_pred cCCCcEEEccCCc--CCCCCCCccccCCCCCCCEEEccCCc-CCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCC
Q 036984 31 MASLRLLSLSYSR--LNKNTILDQGFCQLVHLQELYIRDND-LRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLL 107 (603)
Q Consensus 31 ~~~L~~L~Ls~n~--i~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (603)
++.|++|-+..|. +.. .....|..++.|++|||++|. +..+|..+-.+-+|++|+++++.+.. +|..+++++.|
T Consensus 544 ~~~L~tLll~~n~~~l~~--is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLE--ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKL 620 (889)
T ss_pred CCccceEEEeecchhhhh--cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhh
Confidence 5679999998886 332 233448899999999999876 44444444449999999999999986 88999999999
Q ss_pred cEEeccCCCCccCcCccCCCCCCCCEEEcccCc
Q 036984 108 RELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140 (603)
Q Consensus 108 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 140 (603)
.+|++..+.-....|.....+++|++|.+....
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccc
Confidence 999999987655667777789999999997764
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=2.2e-09 Score=110.72 Aligned_cols=106 Identities=32% Similarity=0.317 Sum_probs=53.0
Q ss_pred CCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEE
Q 036984 56 QLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLD 135 (603)
Q Consensus 56 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 135 (603)
.+..++.+.++.|.+..+....-.+++|+.|++.+|++..+ ...+..+++|++|++++|.|+.+ ..+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 34444445555555544222222255555556665555542 22244555566666666655543 2244455555666
Q ss_pred cccCcCCccCCcccccCCCCCcEEEccCceee
Q 036984 136 VSYNQLTESISSSPLMLLTSIEELILSNNHFQ 167 (603)
Q Consensus 136 L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~ 167 (603)
+++|.+. .+.. +..++.|+.+++++|++.
T Consensus 147 l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 147 LSGNLIS-DISG--LESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eccCcch-hccC--CccchhhhcccCCcchhh
Confidence 6666554 2322 444555555555555544
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=4e-08 Score=90.33 Aligned_cols=230 Identities=17% Similarity=0.159 Sum_probs=115.3
Q ss_pred CceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCc-ccCCCCCE
Q 036984 7 LEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGA-WQTTSLQE 85 (603)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~~~L~~ 85 (603)
++.|.+.++.+....++..+. ..++.++.+||.+|.|+...-......++|.|++|+++.|++....... ....+|++
T Consensus 47 ~ellvln~~~id~~gd~~~~~-~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFG-SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHH-HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 335566666665555554433 3467777777777777654322334566777777777777765433322 23566777
Q ss_pred EEccCCCCCc-CCchhhcCCCCCcEEeccCCCCcc--CcCccCCCC-CCCCEEEcccCcCCc--cCCcccccCCCCCcEE
Q 036984 86 LNVASNKLTR-NFPLGLCELVLLRELYIDNNDLSG--SLPLCLTNL-TSLQVLDVSYNQLTE--SISSSPLMLLTSIEEL 159 (603)
Q Consensus 86 L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l-~~L~~L~L~~n~i~~--~~~~~~~~~l~~L~~L 159 (603)
|.|.+..+.- .....+..+|.++.|.++.|.+.. ...++.... +.+++|....|...- .... .-...+++..+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~-l~r~Fpnv~sv 204 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK-LSRIFPNVNSV 204 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHh-HHhhcccchhe
Confidence 7777665542 122344566666666666663321 111111111 133333333332110 0000 01123444555
Q ss_pred EccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCC-CcChhhccCCCCCEEEcCCCc
Q 036984 160 ILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDG-TFPKFLYHQHDLKNADLSHLN 238 (603)
Q Consensus 160 ~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~ 238 (603)
.+..|+++........ .+.+.+..|.++.+++.. .....+.++++|..|.++++.
T Consensus 205 ~v~e~PlK~~s~ek~s------------------------e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGS------------------------EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred eeecCcccchhhcccC------------------------CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 5555554432222222 233344455666665543 234566778888888888887
Q ss_pred ccCCCCCC---CccccccCCccEEEcc
Q 036984 239 LSGEFPNW---LMPIHCLQKLATLDVS 262 (603)
Q Consensus 239 i~~~~~~~---~~~~~~l~~L~~L~Ls 262 (603)
+....... ..-++.+++++.|+=+
T Consensus 261 l~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 261 LSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccccccCCcceEEEEeeccceEEecCc
Confidence 75433221 1114566777776543
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=3.3e-08 Score=80.24 Aligned_cols=59 Identities=24% Similarity=0.455 Sum_probs=29.4
Q ss_pred cceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCc
Q 036984 401 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461 (603)
Q Consensus 401 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 461 (603)
.++.|++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.||..+|.+.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 4444555555555 34444555555555555555554 34444444555555555555544
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.4e-08 Score=93.22 Aligned_cols=182 Identities=20% Similarity=0.225 Sum_probs=98.0
Q ss_pred CCCCEEEccCCCCCc-CCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc-CCccCCcccccCCCCCcE
Q 036984 81 TSLQELNVASNKLTR-NFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ-LTESISSSPLMLLTSIEE 158 (603)
Q Consensus 81 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~ 158 (603)
..|++||||+..++. ..-..+..+.+|+.|.|.++++.+.+...+++-.+|+.|+++.+. +++....-.+..++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 347777777766653 122345566677777777777766666667777777777777643 332222224556677777
Q ss_pred EEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCC---CCcChhhccCCCCCEEEcC
Q 036984 159 LILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDD---GTFPKFLYHQHDLKNADLS 235 (603)
Q Consensus 159 L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~L~ 235 (603)
|+++.|.+..+..- .....+ ..+|+.|++++++-. ..+..-...+++|.+|||+
T Consensus 265 LNlsWc~l~~~~Vt---------------------v~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVT---------------------VAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLS 321 (419)
T ss_pred cCchHhhccchhhh---------------------HHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccc
Confidence 77777655421100 000001 115666666665421 1222334566777777777
Q ss_pred CCcccCCCCCCCccccccCCccEEEccCccccccCChhh--hhcCCCCcEEecCCC
Q 036984 236 HLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEI--GTYLPGLMHLNLSRN 289 (603)
Q Consensus 236 ~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~--~~~l~~L~~L~L~~n 289 (603)
.|.... ++.+..+.+++.|++|.++.|.. .+|..+ +...|+|.+|++.++
T Consensus 322 D~v~l~--~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 322 DSVMLK--NDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccccC--chHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 764321 12233355667777777776653 233221 223567777766554
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=1.1e-06 Score=81.07 Aligned_cols=110 Identities=25% Similarity=0.273 Sum_probs=69.6
Q ss_pred CCCCCCEEEccCCcCCCCccC-ccc--CCCCCEEEccCCCCCc--CCchhhcCCCCCcEEeccCCCCccCcCccC-CCCC
Q 036984 56 QLVHLQELYIRDNDLRDSLLG-AWQ--TTSLQELNVASNKLTR--NFPLGLCELVLLRELYIDNNDLSGSLPLCL-TNLT 129 (603)
Q Consensus 56 ~l~~L~~L~Ls~n~i~~~~~~-~~~--~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~ 129 (603)
..+-+..|.+.++.|..+... .|+ ++.++.+||.+|.++. .+...+.++|.|+.|+|+.|.+...+ +.+ ..+.
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~ 121 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLK 121 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCccccc
Confidence 334455666666666544322 233 6788888888888764 12234567888888888888876322 222 3456
Q ss_pred CCCEEEcccCcCCccCCcccccCCCCCcEEEccCcee
Q 036984 130 SLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166 (603)
Q Consensus 130 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~ 166 (603)
+|++|-|.+..+.=......+..+|.+++|+++.|.+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 8888888877664222233567778888888888744
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=1.2e-07 Score=77.16 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=78.1
Q ss_pred hcccceEEECcCCCCcccCchhcc-CcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCce
Q 036984 398 ILTSMSGIDLSCNKLTGEIPTQIG-YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVF 476 (603)
Q Consensus 398 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L 476 (603)
....|+..+|++|.+. ..|..|. ..+.++.|++++|.|. .+|..+..++.|+.|+++.|++...+..+..+.++-.|
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 3567888999999998 4455554 4458899999999998 67888999999999999999998433367778888889
Q ss_pred ecccCcccccCCCcccccCCC-CcccccCCcCCC
Q 036984 477 RVAYNNLSGKIPDRVAQFSTF-EEDSYEGNPFLY 509 (603)
Q Consensus 477 ~l~~N~l~~~~p~~~~~l~~l-~~~~l~gn~~~c 509 (603)
+..+|.+- ++|-.+ -.++. -...+..+||--
T Consensus 129 ds~~na~~-eid~dl-~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 129 DSPENARA-EIDVDL-FYSSLPALIKLGNEPLGD 160 (177)
T ss_pred cCCCCccc-cCcHHH-hccccHHHHHhcCCcccc
Confidence 99888877 555432 12222 223455566544
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=2.1e-06 Score=56.49 Aligned_cols=36 Identities=39% Similarity=0.646 Sum_probs=18.9
Q ss_pred cCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCc
Q 036984 425 RIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461 (603)
Q Consensus 425 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 461 (603)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33334555566666666666555
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.06 E-value=1.5e-06 Score=93.62 Aligned_cols=106 Identities=21% Similarity=0.285 Sum_probs=43.0
Q ss_pred CCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCC
Q 036984 6 NLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQ 84 (603)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~ 84 (603)
+|++|+++|.... ..++.......+|+|+.|.+++-.+.... ......++|+|+.||+|+++++.+ ...+ +++|+
T Consensus 123 nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 123 NLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred hhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 3445555553222 23333333334555555555443332211 112234445555555555554443 1112 44444
Q ss_pred EEEccCCCCCc-CCchhhcCCCCCcEEeccCC
Q 036984 85 ELNVASNKLTR-NFPLGLCELVLLRELYIDNN 115 (603)
Q Consensus 85 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n 115 (603)
+|.+.+=.+.. ..-..+.++++|+.||+|..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 44444433332 11113334455555555443
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=1.1e-06 Score=80.08 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=64.7
Q ss_pred ccceEEECcCCCCcccCc-----hhccCcCcCCEEeccccccccc----CCcCCcCCCCCCEEeCCCCcCcccCC-----
Q 036984 400 TSMSGIDLSCNKLTGEIP-----TQIGYLTRIRALNLSHNNLTGT----IPITFSNLKQIESLDLSYNLLHGKIP----- 465 (603)
Q Consensus 400 ~~L~~L~Ls~n~l~~~~~-----~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~----- 465 (603)
..|+++.+..|.|..+.- ..+..+.+|+.|+|.+|.++.. +...+..++.|++|.+.+|-++....
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 467777888877753311 2334567788888888877732 23345566778888888887764322
Q ss_pred Cc--cCCCCCCceecccCcccccCCCc-----c--cccCCCCcccccCCcCC
Q 036984 466 QL--IVLTTLAVFRVAYNNLSGKIPDR-----V--AQFSTFEEDSYEGNPFL 508 (603)
Q Consensus 466 ~~--~~l~~L~~L~l~~N~l~~~~p~~-----~--~~l~~l~~~~l~gn~~~ 508 (603)
.+ ...|+|..|...+|...+.+-.. + ..++.+..+.+.||.+.
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 11 12677788888888765432211 0 12344455566677653
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=7.4e-08 Score=88.63 Aligned_cols=132 Identities=23% Similarity=0.213 Sum_probs=67.6
Q ss_pred CCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCC-CCcC-CchhhcCCCCCc
Q 036984 32 ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNK-LTRN-FPLGLCELVLLR 108 (603)
Q Consensus 32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~ 108 (603)
..|++||||+..|+... ....+..|.+|+.|.+.++++.+.....++ ..+|+.|+++.+. ++.- ..-.+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~st-l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVST-LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHH-HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 34666666666554322 122345666666666666666655444444 5666666666653 2211 112345666677
Q ss_pred EEeccCCCCccCcCc-cCCC-CCCCCEEEcccCcC--C-ccCCcccccCCCCCcEEEccCce
Q 036984 109 ELYIDNNDLSGSLPL-CLTN-LTSLQVLDVSYNQL--T-ESISSSPLMLLTSIEELILSNNH 165 (603)
Q Consensus 109 ~L~L~~n~i~~~~~~-~~~~-l~~L~~L~L~~n~i--~-~~~~~~~~~~l~~L~~L~l~~n~ 165 (603)
.|+|+.|.+...... ...+ -++|+.|+++++.- . ..+.. ....+++|.+||++.|.
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSV 324 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeecccccc
Confidence 777776655422111 1111 13566666666421 1 11111 23456677777777654
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.95 E-value=8.9e-06 Score=71.09 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=79.5
Q ss_pred hcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC--CccCCCCCCc
Q 036984 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP--QLIVLTTLAV 475 (603)
Q Consensus 398 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~ 475 (603)
+......+||++|.+... ..|+.+++|.+|.+.+|+|+.+.|.--.-++.|..|.+.+|.|..... .++.+|.|++
T Consensus 40 ~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 345677899999998733 358888999999999999997777655556889999999999874333 7888999999
Q ss_pred eecccCcccccCC---CcccccCCCCcccccC
Q 036984 476 FRVAYNNLSGKIP---DRVAQFSTFEEDSYEG 504 (603)
Q Consensus 476 L~l~~N~l~~~~p---~~~~~l~~l~~~~l~g 504 (603)
|.+-+|+.+..-- -.+..+++++.+++++
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 9999998874211 1234567777777765
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.92 E-value=1.5e-05 Score=69.77 Aligned_cols=126 Identities=22% Similarity=0.164 Sum_probs=74.4
Q ss_pred CcEEEccCCcCCCCCCCccccC-CCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEe
Q 036984 34 LRLLSLSYSRLNKNTILDQGFC-QLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELY 111 (603)
Q Consensus 34 L~~L~Ls~n~i~~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (603)
=+.++|++.++.... .++ .+.+...+||++|.+..+ ..|. ++.|.+|.+++|+|+.+.|.--.-+++|+.|.
T Consensus 21 e~e~~LR~lkip~ie----nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE----NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI 94 (233)
T ss_pred ccccccccccccchh----hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEE
Confidence 356677776664321 111 234566777777776554 2333 67777777777777776665555566777777
Q ss_pred ccCCCCccCc-CccCCCCCCCCEEEcccCcCCccCC--cccccCCCCCcEEEccCce
Q 036984 112 IDNNDLSGSL-PLCLTNLTSLQVLDVSYNQLTESIS--SSPLMLLTSIEELILSNNH 165 (603)
Q Consensus 112 L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~~l~~L~~L~l~~n~ 165 (603)
|.+|.+.... -..+..+++|++|.+-+|.++..-- .-.+..+++|+.||+.+-.
T Consensus 95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 7777664211 1235567777777777776653111 1134566777777766543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.5e-05 Score=52.49 Aligned_cols=35 Identities=37% Similarity=0.595 Sum_probs=12.8
Q ss_pred CCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCc
Q 036984 83 LQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLS 118 (603)
Q Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 118 (603)
|++|++++|+++. +|..++++++|++|++++|+++
T Consensus 3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 3444444444433 2223344444444444444333
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.84 E-value=1.2e-06 Score=79.85 Aligned_cols=226 Identities=17% Similarity=0.145 Sum_probs=117.4
Q ss_pred CCCCCEEEccCCCCCcCCc----hhhcCCCCCcEEeccCCCC---cc-------CcCccCCCCCCCCEEEcccCcCCccC
Q 036984 80 TTSLQELNVASNKLTRNFP----LGLCELVLLRELYIDNNDL---SG-------SLPLCLTNLTSLQVLDVSYNQLTESI 145 (603)
Q Consensus 80 ~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~i---~~-------~~~~~~~~l~~L~~L~L~~n~i~~~~ 145 (603)
+..+..++||+|.|..... ..+.+-.+|+..++++--. .. .+..++.+||+|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5667777777777654332 2344556677777765321 11 12235667889999999998886554
Q ss_pred Cc---ccccCCCCCcEEEccCceeeeecCcc----ccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCC
Q 036984 146 SS---SPLMLLTSIEELILSNNHFQIPISLE----PLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGT 218 (603)
Q Consensus 146 ~~---~~~~~l~~L~~L~l~~n~~~~~~~~~----~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 218 (603)
|. +.+++-+.|++|.+++|.+. +.... .+..|... ......+.|+......|++..-
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~n---------------KKaa~kp~Le~vicgrNRleng 172 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYN---------------KKAADKPKLEVVICGRNRLENG 172 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHH---------------hhhccCCCceEEEeccchhccC
Confidence 43 23456678899999888764 22111 11111111 1112233555555555554321
Q ss_pred cChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCC-----hhhhhcCCCCcEEecCCCCccc
Q 036984 219 FPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIP-----VEIGTYLPGLMHLNLSRNAFND 293 (603)
Q Consensus 219 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-----~~~~~~l~~L~~L~L~~n~l~~ 293 (603)
... .|...+..-..|+.+.+..|.|....- ...+ .+.+|+.|++++|.++.
T Consensus 173 s~~-----------------------~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~ 228 (388)
T COG5238 173 SKE-----------------------LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTL 228 (388)
T ss_pred cHH-----------------------HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhh
Confidence 100 000001111345555555555431100 0112 25566666666666654
Q ss_pred ccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccc------cCCCCCCEEecCCCcCcc
Q 036984 294 LSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQL------CQLKEVRLIDLSHNNLSG 349 (603)
Q Consensus 294 l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~Ls~n~l~~ 349 (603)
.....+....+.| +.|+.|.+..|.++.....++ ...++|+.|-..+|.+.+
T Consensus 229 ~gS~~La~al~~W----~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 229 EGSRYLADALCEW----NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhHHHHHHHhccc----chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 4333333333443 567888888887765543322 235778888888887754
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.78 E-value=4.9e-07 Score=87.27 Aligned_cols=83 Identities=20% Similarity=0.073 Sum_probs=38.5
Q ss_pred CCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCc-CCCCccCccc--CCCCCEEEccCCC-CCcCCch-hhcCCCCC
Q 036984 33 SLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDND-LRDSLLGAWQ--TTSLQELNVASNK-LTRNFPL-GLCELVLL 107 (603)
Q Consensus 33 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~--~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L 107 (603)
-|+.|.++++.=.+...+.....++|++++|.+.++. +++.....+. +++|++|++..|. ++...-. .-.++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4556666665433322233334456666666665554 2222222222 5666666666542 2221111 22345556
Q ss_pred cEEeccCC
Q 036984 108 RELYIDNN 115 (603)
Q Consensus 108 ~~L~L~~n 115 (603)
++|+++.+
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 66666554
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.00015 Score=72.22 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=21.4
Q ss_pred cccceEEECcCCCCcccCchhccCcCcCCEEeccccc
Q 036984 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN 435 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 435 (603)
+++|+.|++++|... ..|..++ .+|+.|+++.|.
T Consensus 155 PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 155 SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 457777777777655 3444444 467777777663
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=0.00016 Score=71.99 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=5.6
Q ss_pred ccceEEECcCC
Q 036984 400 TSMSGIDLSCN 410 (603)
Q Consensus 400 ~~L~~L~Ls~n 410 (603)
.+|+.|+++.+
T Consensus 177 ~SLk~L~ls~n 187 (426)
T PRK15386 177 ESLQSITLHIE 187 (426)
T ss_pred ccCcEEEeccc
Confidence 35555555544
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.66 E-value=1.2e-06 Score=84.72 Aligned_cols=87 Identities=18% Similarity=0.125 Sum_probs=40.2
Q ss_pred cccEEeccCCCCCC--CcChhhccCCCCCEEEcCCCcccCCC-CCCCc-cccccCCccEEEccCccccccCChhhhhcCC
Q 036984 204 QLTSISLSGYRDDG--TFPKFLYHQHDLKNADLSHLNLSGEF-PNWLM-PIHCLQKLATLDVSNNFFQGHIPVEIGTYLP 279 (603)
Q Consensus 204 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~ 279 (603)
.|+.+++..+.... .+...-.+++.|+.+.+++|....+. ...+. .-..+..|+.+.++++.....-.......++
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 45555555554321 12222235566666666666432221 00000 0123456777777776543222223333466
Q ss_pred CCcEEecCCCC
Q 036984 280 GLMHLNLSRNA 290 (603)
Q Consensus 280 ~L~~L~L~~n~ 290 (603)
+|+.+++-+++
T Consensus 427 ~Leri~l~~~q 437 (483)
T KOG4341|consen 427 NLERIELIDCQ 437 (483)
T ss_pred ccceeeeechh
Confidence 77776665553
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.51 E-value=0.00029 Score=59.65 Aligned_cols=105 Identities=22% Similarity=0.285 Sum_probs=38.8
Q ss_pred ccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCC
Q 036984 53 GFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSL 131 (603)
Q Consensus 53 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 131 (603)
.|.++.+|+.+.+.. .+..+...+|. +++|+.+.+.++ +..+....|.++++|+.+.+.+ .+......+|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555555555542 34444445554 445555555443 3333334444544455555543 2222333444445555
Q ss_pred CEEEcccCcCCccCCcccccCCCCCcEEEccC
Q 036984 132 QVLDVSYNQLTESISSSPLMLLTSIEELILSN 163 (603)
Q Consensus 132 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~ 163 (603)
+.+++..+ +. .++...|... +++.+.+..
T Consensus 84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 55555433 22 2333344444 555554443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.49 E-value=0.0003 Score=59.50 Aligned_cols=118 Identities=16% Similarity=0.244 Sum_probs=69.6
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE 109 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (603)
+++|+.+.+.. .+.. +....|.++++|+.+.+.++ +..+...+|. +++++.+.+.+ .+.......|..+++|+.
T Consensus 11 ~~~l~~i~~~~-~~~~--I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 11 CSNLESITFPN-TIKK--IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp -TT--EEEETS-T--E--E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCEEEECC-CeeE--eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 67888998874 3442 34567999999999999885 8888888888 77899999976 555555678888999999
Q ss_pred EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCc
Q 036984 110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIE 157 (603)
Q Consensus 110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~ 157 (603)
+++..+ +......+|.++ +|+.+.+.. .+. .++...|.++++|+
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence 999775 665667788887 999999876 444 45666788777764
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=7.6e-05 Score=80.72 Aligned_cols=110 Identities=22% Similarity=0.297 Sum_probs=78.7
Q ss_pred CCCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCC--CccCcccC
Q 036984 3 EFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRD--SLLGAWQT 80 (603)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~ 80 (603)
-+|+|++|.+++..+..+ ++.+.. ..+|+|+.||+|+..++.. .+++++++|++|.+.+-.+.. ...+.|.+
T Consensus 146 ~LPsL~sL~i~~~~~~~~-dF~~lc-~sFpNL~sLDIS~TnI~nl----~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDND-DFSQLC-ASFPNLRSLDISGTNISNL----SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCceecch-hHHHHh-hccCccceeecCCCCccCc----HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 489999999999766433 344544 4489999999999999864 578999999999999887764 33466779
Q ss_pred CCCCEEEccCCCCCcCC--c----hhhcCCCCCcEEeccCCCCc
Q 036984 81 TSLQELNVASNKLTRNF--P----LGLCELVLLRELYIDNNDLS 118 (603)
Q Consensus 81 ~~L~~L~Ls~n~l~~~~--~----~~~~~l~~L~~L~L~~n~i~ 118 (603)
++|++||+|........ . +.-..+|+||.||.|++.+.
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 99999999988655421 0 01123555555555555443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.00027 Score=64.78 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=44.7
Q ss_pred cccceEEECcCC--CCcccCchhccCcCcCCEEecccccccccCCcC---CcCCCCCCEEeCCCCcCcccCC----CccC
Q 036984 399 LTSMSGIDLSCN--KLTGEIPTQIGYLTRIRALNLSHNNLTGTIPIT---FSNLKQIESLDLSYNLLHGKIP----QLIV 469 (603)
Q Consensus 399 l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~----~~~~ 469 (603)
+++|+.|.++.| ++.+.++.-...+++|++|+++.|+|.. ++. +..+.+|..||+.+|.-+.... .+.-
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 556666666666 4444444334445777777777777662 222 3344566677777776654222 2334
Q ss_pred CCCCCceecc
Q 036984 470 LTTLAVFRVA 479 (603)
Q Consensus 470 l~~L~~L~l~ 479 (603)
+++|++|+-.
T Consensus 142 l~~L~~LD~~ 151 (260)
T KOG2739|consen 142 LPSLKYLDGC 151 (260)
T ss_pred hhhhcccccc
Confidence 6666666544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.00043 Score=63.53 Aligned_cols=104 Identities=27% Similarity=0.233 Sum_probs=72.1
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCC--cCCCCccCccc-CCCCCEEEccCCCCCcC-CchhhcCCCC
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDN--DLRDSLLGAWQ-TTSLQELNVASNKLTRN-FPLGLCELVL 106 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~-~~~~~~~l~~ 106 (603)
+..|+.|++.+..++.. ..|-.+++|+.|.+|.| ++..-...... +++|++|++++|++..+ .-..+..+.+
T Consensus 42 ~~~le~ls~~n~gltt~----~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL----TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhccceeec----ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 56778888888777643 34678899999999999 44432222222 79999999999987631 1123567788
Q ss_pred CcEEeccCCCCccCcC---ccCCCCCCCCEEEccc
Q 036984 107 LRELYIDNNDLSGSLP---LCLTNLTSLQVLDVSY 138 (603)
Q Consensus 107 L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~L~~ 138 (603)
|..|++.+|..+...- ..|.-+++|++|+-..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 9999999997764211 2366678888887543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=4.1e-05 Score=70.26 Aligned_cols=84 Identities=25% Similarity=0.238 Sum_probs=48.1
Q ss_pred CCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcC-ccCCCCCCCCEE
Q 036984 57 LVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLP-LCLTNLTSLQVL 134 (603)
Q Consensus 57 l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L 134 (603)
+.+.+.|++-+|.+++|. +.. ++.|++|.||-|+|+... .+..+++|++|+|..|.|.+..- ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 334455555555555442 222 666666666666666542 35666777777777776653211 235566777777
Q ss_pred EcccCcCCcc
Q 036984 135 DVSYNQLTES 144 (603)
Q Consensus 135 ~L~~n~i~~~ 144 (603)
-|..|...+.
T Consensus 94 WL~ENPCc~~ 103 (388)
T KOG2123|consen 94 WLDENPCCGE 103 (388)
T ss_pred hhccCCcccc
Confidence 7776665543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=5e-05 Score=69.75 Aligned_cols=83 Identities=23% Similarity=0.268 Sum_probs=48.2
Q ss_pred CCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcc-c-CC
Q 036984 4 FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAW-Q-TT 81 (603)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~-~~ 81 (603)
+.+.+.|++.|+.+.. .+ +...|+.|++|.||-|+|+.. ..+..|.+|++|+|..|.|.++..-.. . ++
T Consensus 18 l~~vkKLNcwg~~L~D----Is-ic~kMp~lEVLsLSvNkIssL----~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD----IS-ICEKMPLLEVLSLSVNKISSL----APLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccH----HH-HHHhcccceeEEeeccccccc----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 3455666666654421 11 223467777777777777643 346677777777777777666543222 2 66
Q ss_pred CCCEEEccCCCCCc
Q 036984 82 SLQELNVASNKLTR 95 (603)
Q Consensus 82 ~L~~L~Ls~n~l~~ 95 (603)
+|+.|.|..|.-.+
T Consensus 89 sLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 89 SLRTLWLDENPCCG 102 (388)
T ss_pred hhhhHhhccCCccc
Confidence 66666666665443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.00 E-value=0.00077 Score=71.55 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=11.5
Q ss_pred hhhccCCCCCEEEcCCCc
Q 036984 221 KFLYHQHDLKNADLSHLN 238 (603)
Q Consensus 221 ~~~~~l~~L~~L~L~~n~ 238 (603)
.....+++++.+.+..+.
T Consensus 356 ~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 356 LILRSCPKLTDLSLSYCG 373 (482)
T ss_pred HHHhcCCCcchhhhhhhh
Confidence 345566677777777665
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.53 E-value=0.0023 Score=67.84 Aligned_cols=134 Identities=20% Similarity=0.079 Sum_probs=86.2
Q ss_pred CCCCCceecccccccccccchHHHHHHhcCCCcEEEccCC-cCCCCCC--CccccCCCCCCCEEEccCCc-CCCCccCcc
Q 036984 3 EFKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYS-RLNKNTI--LDQGFCQLVHLQELYIRDND-LRDSLLGAW 78 (603)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~--~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~ 78 (603)
.++.|+.|.+.++....+..+..+. ..++.|+.|+++++ ....... .......+++|+.|+++++. +++.....+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHH-hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3678888988887655554444444 44899999999974 2211111 11244567999999999988 776665555
Q ss_pred c--CCCCCEEEccCCC-CCcCC-chhhcCCCCCcEEeccCCCCccC--cCccCCCCCCCCEEEcc
Q 036984 79 Q--TTSLQELNVASNK-LTRNF-PLGLCELVLLRELYIDNNDLSGS--LPLCLTNLTSLQVLDVS 137 (603)
Q Consensus 79 ~--~~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~ 137 (603)
. +++|++|.+.++. ++... ......+++|++|+++++..... ......++++|+.|.+.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 5 7899999988886 44322 22345678899999998865311 11223345666665543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.21 E-value=0.0092 Score=32.47 Aligned_cols=20 Identities=60% Similarity=0.865 Sum_probs=10.8
Q ss_pred CCEEecccccccccCCcCCcC
Q 036984 426 IRALNLSHNNLTGTIPITFSN 446 (603)
Q Consensus 426 L~~L~Ls~N~l~~~~~~~~~~ 446 (603)
|++|+|++|+++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 556666666665 44444443
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.42 E-value=0.00029 Score=72.94 Aligned_cols=85 Identities=25% Similarity=0.278 Sum_probs=37.7
Q ss_pred ccceEEECcCCCCcccC----chhccCcCc-CCEEeccccccccc----CCcCCcCC-CCCCEEeCCCCcCcccCC----
Q 036984 400 TSMSGIDLSCNKLTGEI----PTQIGYLTR-IRALNLSHNNLTGT----IPITFSNL-KQIESLDLSYNLLHGKIP---- 465 (603)
Q Consensus 400 ~~L~~L~Ls~n~l~~~~----~~~l~~l~~-L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~Ls~N~l~~~~~---- 465 (603)
.++++|++++|.++... ...+...+. +..|++++|++.+. ....+..+ ..++.++++.|+|+....
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 34555555555544211 112233333 44455555555432 11223333 345555555555553222
Q ss_pred -CccCCCCCCceecccCccc
Q 036984 466 -QLIVLTTLAVFRVAYNNLS 484 (603)
Q Consensus 466 -~~~~l~~L~~L~l~~N~l~ 484 (603)
.+..++.++.+.+++|++.
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHhhhHHHHHhhcccCccc
Confidence 2333445555555555543
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.39 E-value=0.015 Score=31.57 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=4.3
Q ss_pred cEEeccCCCCc
Q 036984 108 RELYIDNNDLS 118 (603)
Q Consensus 108 ~~L~L~~n~i~ 118 (603)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33344444333
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.42 E-value=0.0003 Score=72.87 Aligned_cols=88 Identities=24% Similarity=0.151 Sum_probs=41.7
Q ss_pred cccEEeccCCCCCCCc----ChhhccCCCCCEEEcCCCcccCCCCCCCc-ccccc-CCccEEEccCccccccCC----hh
Q 036984 204 QLTSISLSGYRDDGTF----PKFLYHQHDLKNADLSHLNLSGEFPNWLM-PIHCL-QKLATLDVSNNFFQGHIP----VE 273 (603)
Q Consensus 204 ~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~~~~l-~~L~~L~Ls~n~~~~~~~----~~ 273 (603)
.+..+.+.+|.+.... ...+.....|+.|++++|.+.+..-..+. .+... ..++.|++..|.+++... ..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3666666677665442 23344566677777777766521111000 01111 345556666665543222 12
Q ss_pred hhhcCCCCcEEecCCCCcc
Q 036984 274 IGTYLPGLMHLNLSRNAFN 292 (603)
Q Consensus 274 ~~~~l~~L~~L~L~~n~l~ 292 (603)
+.. ...++.++++.|.+.
T Consensus 168 L~~-~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 168 LEK-NEHLTELDLSLNGLI 185 (478)
T ss_pred Hhc-ccchhHHHHHhcccc
Confidence 222 345555555555544
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.35 E-value=0.062 Score=30.55 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=12.2
Q ss_pred CCCCEEEccCCcCCCCccCcc
Q 036984 58 VHLQELYIRDNDLRDSLLGAW 78 (603)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~ 78 (603)
++|+.|+|++|+++.+++.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666666555554
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.35 E-value=0.062 Score=30.55 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=12.2
Q ss_pred CCCCEEEccCCcCCCCccCcc
Q 036984 58 VHLQELYIRDNDLRDSLLGAW 78 (603)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~ 78 (603)
++|+.|+|++|+++.+++.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666666555554
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.17 E-value=0.066 Score=26.93 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=4.3
Q ss_pred CCCEEEccCCcCC
Q 036984 59 HLQELYIRDNDLR 71 (603)
Q Consensus 59 ~L~~L~Ls~n~i~ 71 (603)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444433
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.76 E-value=0.0055 Score=55.18 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=55.3
Q ss_pred hcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCce
Q 036984 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVF 476 (603)
Q Consensus 398 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L 476 (603)
.....+.||++.|++. .....|.-++.|..|+++.|++. ..|..+.++..+..+++..|..+ ..| ++...+.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3455666777777665 33344566667777777777776 66666766666777777777766 445 66677777777
Q ss_pred ecccCccc
Q 036984 477 RVAYNNLS 484 (603)
Q Consensus 477 ~l~~N~l~ 484 (603)
++..|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77776654
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.25 E-value=0.25 Score=28.00 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=14.7
Q ss_pred CCccEEEccCccccccCChhhhh
Q 036984 254 QKLATLDVSNNFFQGHIPVEIGT 276 (603)
Q Consensus 254 ~~L~~L~Ls~n~~~~~~~~~~~~ 276 (603)
++|+.|+|++|.+. .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 46777777777776 66666553
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.25 E-value=0.25 Score=28.00 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=14.7
Q ss_pred CCccEEEccCccccccCChhhhh
Q 036984 254 QKLATLDVSNNFFQGHIPVEIGT 276 (603)
Q Consensus 254 ~~L~~L~Ls~n~~~~~~~~~~~~ 276 (603)
++|+.|+|++|.+. .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 46777777777776 66666553
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.72 E-value=0.047 Score=48.41 Aligned_cols=85 Identities=20% Similarity=0.222 Sum_probs=55.2
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCC
Q 036984 311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPM 390 (603)
Q Consensus 311 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (603)
-.++.++-++..|..+.-+.+..++.++.|.+.+|.-.+. .++.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD--~~L~---------------------------------- 144 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDD--WCLE---------------------------------- 144 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhh--HHHH----------------------------------
Confidence 3566777777777777667777788888888877755311 0111
Q ss_pred CcchhhhhcccceEEECcCC-CCcccCchhccCcCcCCEEecccc
Q 036984 391 GKEETVQILTSMSGIDLSCN-KLTGEIPTQIGYLTRIRALNLSHN 434 (603)
Q Consensus 391 ~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~N 434 (603)
......++|+.|++++| +||+..-..+..+++|+.|.|.+=
T Consensus 145 ---~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 145 ---RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ---HhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 11123567888888877 577665666777777777776653
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.53 E-value=0.023 Score=51.29 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=54.7
Q ss_pred hhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcc
Q 036984 394 ETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG 462 (603)
Q Consensus 394 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 462 (603)
..++.++.+..|+++.|.+. ..|..++....++++++.+|... ..|.++...+.++.+++-.|.+..
T Consensus 59 ~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 59 KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcchH
Confidence 34566778888888888887 67778888888888888888888 778888889999999998888653
No 83
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=86.34 E-value=0.35 Score=30.43 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=12.9
Q ss_pred EEeeehhhhHHHHHHhhhhhcchhhhh
Q 036984 546 LITFTVSYGIAIIGIIGVLYVNPYWRR 572 (603)
Q Consensus 546 ~~~~~v~~~~~~~~~~~~~~~~~~~~~ 572 (603)
.++++|++-++++++++.++++.||||
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhheEEec
Confidence 345555554444444444444444444
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.56 E-value=0.41 Score=26.49 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=5.8
Q ss_pred CCCCEEecCCCcCc
Q 036984 335 KEVRLIDLSHNNLS 348 (603)
Q Consensus 335 ~~L~~L~Ls~n~l~ 348 (603)
++|++|+|++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34455555555544
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.22 E-value=1.5 Score=24.94 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=7.1
Q ss_pred CCCCEEEccCCcCCC
Q 036984 58 VHLQELYIRDNDLRD 72 (603)
Q Consensus 58 ~~L~~L~Ls~n~i~~ 72 (603)
.+|++|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 344555555554443
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=78.16 E-value=1.3 Score=54.76 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=14.6
Q ss_pred cccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984 478 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 478 l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c 509 (603)
|++|+|+..-+..|..+.+++.++++||||.|
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 34444443333334444444455555555555
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.01 E-value=0.28 Score=43.64 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=20.9
Q ss_pred CCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCC
Q 036984 82 SLQELNVASNKLTRNFPLGLCELVLLRELYIDNND 116 (603)
Q Consensus 82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 116 (603)
.++.+|-+++.|..+.-+.+.+++.++.|.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 35666666666655555555566666666666653
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.78 E-value=1.4 Score=45.42 Aligned_cols=11 Identities=45% Similarity=0.724 Sum_probs=6.0
Q ss_pred CcEEeccCCCC
Q 036984 107 LRELYIDNNDL 117 (603)
Q Consensus 107 L~~L~L~~n~i 117 (603)
|++|-+.+|.+
T Consensus 272 Leel~l~GNPl 282 (585)
T KOG3763|consen 272 LEELVLEGNPL 282 (585)
T ss_pred HHHeeecCCcc
Confidence 55555555554
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.57 E-value=2.3 Score=24.10 Aligned_cols=13 Identities=46% Similarity=0.751 Sum_probs=6.4
Q ss_pred cCCEEeccccccc
Q 036984 425 RIRALNLSHNNLT 437 (603)
Q Consensus 425 ~L~~L~Ls~N~l~ 437 (603)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3445555555554
No 90
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=71.06 E-value=2.5 Score=35.48 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=3.6
Q ss_pred eehhhhHHHH
Q 036984 549 FTVSYGIAII 558 (603)
Q Consensus 549 ~~v~~~~~~~ 558 (603)
++++++++++
T Consensus 5 ~~iii~~i~l 14 (130)
T PF12273_consen 5 FAIIIVAILL 14 (130)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.12 E-value=4.1 Score=23.52 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=9.6
Q ss_pred CCCCEEeCCCCcCc
Q 036984 448 KQIESLDLSYNLLH 461 (603)
Q Consensus 448 ~~L~~L~Ls~N~l~ 461 (603)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777765
No 92
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=65.49 E-value=3.2 Score=35.12 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=11.9
Q ss_pred eEEeeehhhhHHHHHHhhhhhc
Q 036984 545 FLITFTVSYGIAIIGIIGVLYV 566 (603)
Q Consensus 545 ~~~~~~v~~~~~~~~~~~~~~~ 566 (603)
.+++++|++++.+++++++++|
T Consensus 50 IVIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred EEEEEEecccHHHHHHHHHhhe
Confidence 4566666665555544444433
No 93
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=60.43 E-value=5.5 Score=32.31 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=0.0
Q ss_pred hhhhhcchhhhhHHHh
Q 036984 561 IGVLYVNPYWRRRWFY 576 (603)
Q Consensus 561 ~~~~~~~~~~~~~~~~ 576 (603)
..+++++|.+|++.|-
T Consensus 96 sg~lv~rrcrrr~~~t 111 (129)
T PF12191_consen 96 SGFLVWRRCRRREKFT 111 (129)
T ss_dssp ----------------
T ss_pred HHHHHHhhhhccccCC
Confidence 3455555555665553
No 94
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=60.21 E-value=5.3 Score=31.35 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=4.9
Q ss_pred EEeeehhhhHHH
Q 036984 546 LITFTVSYGIAI 557 (603)
Q Consensus 546 ~~~~~v~~~~~~ 557 (603)
+.+++|++++++
T Consensus 68 iagi~vg~~~~v 79 (96)
T PTZ00382 68 IAGISVAVVAVV 79 (96)
T ss_pred EEEEEeehhhHH
Confidence 334444444333
No 95
>PF15102 TMEM154: TMEM154 protein family
Probab=59.39 E-value=5.2 Score=33.67 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=5.4
Q ss_pred HHhhhhhcchhhh
Q 036984 559 GIIGVLYVNPYWR 571 (603)
Q Consensus 559 ~~~~~~~~~~~~~ 571 (603)
++++++.++||||
T Consensus 74 ~vV~lv~~~kRkr 86 (146)
T PF15102_consen 74 SVVCLVIYYKRKR 86 (146)
T ss_pred HHHHheeEEeecc
Confidence 3333444444444
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=54.61 E-value=55 Score=33.66 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=17.2
Q ss_pred CCEEecccccccccCCcC---CcCCCCCCEEeCCCCcCc
Q 036984 426 IRALNLSHNNLTGTIPIT---FSNLKQIESLDLSYNLLH 461 (603)
Q Consensus 426 L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~Ls~N~l~ 461 (603)
+..+.++.|.+....... ...-+.+..||+++|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 445555555554322111 222345666666666554
No 97
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.65 E-value=5.2 Score=32.80 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=11.9
Q ss_pred EeeehhhhHHHHHHhhhhhcchhhh
Q 036984 547 ITFTVSYGIAIIGIIGVLYVNPYWR 571 (603)
Q Consensus 547 ~~~~v~~~~~~~~~~~~~~~~~~~~ 571 (603)
+++++++++++++++++++|+.+++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444433
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.01 E-value=14 Score=38.64 Aligned_cols=71 Identities=23% Similarity=0.195 Sum_probs=51.2
Q ss_pred HHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCC--cCCCCcc-CcccCCCCCEEEccCCCCCc
Q 036984 25 QIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDN--DLRDSLL-GAWQTTSLQELNVASNKLTR 95 (603)
Q Consensus 25 ~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~-~~~~~~~L~~L~Ls~n~l~~ 95 (603)
.+.....+.+..++|++|++........--...|+|.+|+|++| .+..... .-++...|++|.+.||.+..
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 44456688999999999999765544444556799999999999 3333211 12236779999999998865
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=45.37 E-value=15 Score=46.13 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=26.3
Q ss_pred ecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC
Q 036984 430 NLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP 465 (603)
Q Consensus 430 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 465 (603)
||++|+|+.+.+..|..+++|++|+|++|++.+.-.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 577788876666677778888888888888775433
No 100
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=43.97 E-value=15 Score=20.53 Aligned_cols=11 Identities=45% Similarity=0.422 Sum_probs=5.8
Q ss_pred CCCcEEEccCC
Q 036984 32 ASLRLLSLSYS 42 (603)
Q Consensus 32 ~~L~~L~Ls~n 42 (603)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555555
No 101
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=42.70 E-value=27 Score=31.57 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=9.1
Q ss_pred eEEeeehhhhHHHHHHhhhhhc
Q 036984 545 FLITFTVSYGIAIIGIIGVLYV 566 (603)
Q Consensus 545 ~~~~~~v~~~~~~~~~~~~~~~ 566 (603)
.+++++.+++++++++++++++
T Consensus 39 I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHH
Confidence 3344444444444433333333
No 102
>PTZ00370 STEVOR; Provisional
Probab=41.01 E-value=9.6 Score=36.02 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=4.3
Q ss_pred Hhhhhhcchhh
Q 036984 560 IIGVLYVNPYW 570 (603)
Q Consensus 560 ~~~~~~~~~~~ 570 (603)
+++++|+|.|+
T Consensus 270 vliilYiwlyr 280 (296)
T PTZ00370 270 VLIILYIWLYR 280 (296)
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 103
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=38.35 E-value=9.5 Score=35.97 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=5.2
Q ss_pred HHhhhhhcchhhh
Q 036984 559 GIIGVLYVNPYWR 571 (603)
Q Consensus 559 ~~~~~~~~~~~~~ 571 (603)
++++++|+|.|+|
T Consensus 273 vvliiLYiWlyrr 285 (295)
T TIGR01478 273 VVLIILYIWLYRR 285 (295)
T ss_pred HHHHHHHHHHHHh
Confidence 3334444443333
No 104
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=35.50 E-value=17 Score=29.69 Aligned_cols=29 Identities=28% Similarity=0.181 Sum_probs=16.6
Q ss_pred hhhhHHHHHHhhhhhcchhhhhHHHhhhh
Q 036984 551 VSYGIAIIGIIGVLYVNPYWRRRWFYLVE 579 (603)
Q Consensus 551 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (603)
++++++++++.+.+++++|+|++....-+
T Consensus 107 l~il~~i~is~~~~~~yr~~r~~~~~~~~ 135 (139)
T PHA03099 107 VLVLVGIIITCCLLSVYRFTRRTKLPLQD 135 (139)
T ss_pred HHHHHHHHHHHHHHhhheeeecccCchhh
Confidence 34444444455566667777777655443
No 105
>PRK01844 hypothetical protein; Provisional
Probab=29.22 E-value=25 Score=25.57 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=15.4
Q ss_pred ehhhhHHHHHHhhhhhcchhhhhHHHh
Q 036984 550 TVSYGIAIIGIIGVLYVNPYWRRRWFY 576 (603)
Q Consensus 550 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (603)
+++++.+++.+++..++.|++.++|+.
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666666666654
No 106
>PRK00523 hypothetical protein; Provisional
Probab=28.24 E-value=24 Score=25.67 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=15.1
Q ss_pred ehhhhHHHHHHhhhhhcchhhhhHHHh
Q 036984 550 TVSYGIAIIGIIGVLYVNPYWRRRWFY 576 (603)
Q Consensus 550 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (603)
+++++++++.+++..++.|++.++|+.
T Consensus 9 ~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 9 GLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666666666654
No 107
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=28.00 E-value=31 Score=21.52 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=4.4
Q ss_pred eeehhhhHHHH
Q 036984 548 TFTVSYGIAII 558 (603)
Q Consensus 548 ~~~v~~~~~~~ 558 (603)
+..++++++++
T Consensus 7 aIIv~V~vg~~ 17 (38)
T PF02439_consen 7 AIIVAVVVGMA 17 (38)
T ss_pred hHHHHHHHHHH
Confidence 33444444333
No 108
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=27.66 E-value=19 Score=28.65 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=1.4
Q ss_pred eehhhhHHHHHHhhhhhcchhh
Q 036984 549 FTVSYGIAIIGIIGVLYVNPYW 570 (603)
Q Consensus 549 ~~v~~~~~~~~~~~~~~~~~~~ 570 (603)
++|++++++..+++++-.|+..
T Consensus 27 aGIGiL~VILgiLLliGCWYck 48 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCK 48 (118)
T ss_dssp -SSS------------------
T ss_pred ccceeHHHHHHHHHHHhheeee
Confidence 3444444444444444333333
No 109
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=27.46 E-value=12 Score=31.38 Aligned_cols=15 Identities=0% Similarity=0.237 Sum_probs=5.7
Q ss_pred ehhhhHHHHHHhhhh
Q 036984 550 TVSYGIAIIGIIGVL 564 (603)
Q Consensus 550 ~v~~~~~~~~~~~~~ 564 (603)
+|++..+++++++.+
T Consensus 13 ~igi~Ll~lLl~cgi 27 (158)
T PF11770_consen 13 SIGISLLLLLLLCGI 27 (158)
T ss_pred HHHHHHHHHHHHHhc
Confidence 333333333334433
No 110
>PF15050 SCIMP: SCIMP protein
Probab=25.62 E-value=27 Score=28.07 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=8.9
Q ss_pred eEEeeehhhhHHHHHHhhhhh
Q 036984 545 FLITFTVSYGIAIIGIIGVLY 565 (603)
Q Consensus 545 ~~~~~~v~~~~~~~~~~~~~~ 565 (603)
|++.++|+.+++.+++.+++|
T Consensus 8 FWiiLAVaII~vS~~lglIly 28 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILY 28 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 444455554443333333333
No 111
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=23.11 E-value=36 Score=26.08 Aligned_cols=27 Identities=11% Similarity=-0.149 Sum_probs=15.7
Q ss_pred eeEEeeehhhhHHHHHHhhhhhcchhh
Q 036984 544 SFLITFTVSYGIAIIGIIGVLYVNPYW 570 (603)
Q Consensus 544 ~~~~~~~v~~~~~~~~~~~~~~~~~~~ 570 (603)
|.+++.+-+++++++++.++.+.+.+|
T Consensus 42 WpyLA~GGG~iLilIii~Lv~CC~~K~ 68 (98)
T PF07204_consen 42 WPYLAAGGGLILILIIIALVCCCRAKH 68 (98)
T ss_pred hHHhhccchhhhHHHHHHHHHHhhhhh
Confidence 455666666666666555555555444
No 112
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.59 E-value=1.2e+02 Score=31.30 Aligned_cols=284 Identities=15% Similarity=0.022 Sum_probs=137.2
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcc--c--CCCCCEEEccCCCCCcCCchhhc---C
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAW--Q--TTSLQELNVASNKLTRNFPLGLC---E 103 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~--~~~L~~L~Ls~n~l~~~~~~~~~---~ 103 (603)
-+.++++|++.|.+.......-.=...+ +.++.|..++-...-. + -..+.+++++.|.....+|..+. .
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~ 239 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAG 239 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhh
Confidence 4567899999998865432110001112 5566665543221111 1 24578889998887766665432 2
Q ss_pred CCCCcEEeccCCCCcc---CcCccCCCCCCCCEEEcccCcCCc----cCC---cccccCCCCCcEEEccCceeeeecCcc
Q 036984 104 LVLLRELYIDNNDLSG---SLPLCLTNLTSLQVLDVSYNQLTE----SIS---SSPLMLLTSIEELILSNNHFQIPISLE 173 (603)
Q Consensus 104 l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~i~~----~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~ 173 (603)
-.-++.++.+...+.. ..+-.++.-++|++.+++.|.... +.+ ...++.-+++ +|++..+.......-.
T Consensus 240 ~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks 318 (553)
T KOG4242|consen 240 TLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKS 318 (553)
T ss_pred hhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhh
Confidence 2347788888776642 122234455678888888775431 111 1244444566 6666665432111000
Q ss_pred ccCCCC---CCce--eeccc-eeeeccCCCCCCCcccccEEeccCCCCCCCcChh--hccCCCCCEEEcCCCcccCC-CC
Q 036984 174 PLSNLS---KLKA--FNGEI-YLETESHYNSLTPKFQLTSISLSGYRDDGTFPKF--LYHQHDLKNADLSHLNLSGE-FP 244 (603)
Q Consensus 174 ~l~~L~---~L~~--l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~L~~n~i~~~-~~ 244 (603)
.+-.+. ...- ++... ..........-..-..++++.+..|...+..... +...+..+.+++..-..... .+
T Consensus 319 ~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s 398 (553)
T KOG4242|consen 319 MLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDS 398 (553)
T ss_pred hhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceeccc
Confidence 000000 0000 00000 0000000011111125888999988877654333 34445667776665432100 11
Q ss_pred CCCcc-c----cccCCccEEEccCccccccCChhhh---hcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEE
Q 036984 245 NWLMP-I----HCLQKLATLDVSNNFFQGHIPVEIG---TYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYL 316 (603)
Q Consensus 245 ~~~~~-~----~~l~~L~~L~Ls~n~~~~~~~~~~~---~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L 316 (603)
....+ . ....-++.+.++.|... .-+.... ..-+.+.+|++++|...+...- .+|.......+++..
T Consensus 399 ~~~a~~v~k~~~~~g~l~el~ls~~~lk-a~l~s~in~l~stqtl~kldisgn~mgd~gap----~lpkalq~n~rlr~i 473 (553)
T KOG4242|consen 399 STEAPPVSKKSRTHGVLAELSLSPGPLK-AGLESAINKLLSTQTLAKLDISGNGMGDGGAP----PLPKALQSNCRLRPI 473 (553)
T ss_pred cccchhhhhhhcccccccCcccCCCccc-ccHHHHHHhhccCcccccccccCCCcccCCCC----cCccccCCCCccCCC
Confidence 10000 0 11234778888888775 2222211 1245788999998876554322 233444444556666
Q ss_pred eccCCcCc
Q 036984 317 LLANNYIE 324 (603)
Q Consensus 317 ~L~~n~l~ 324 (603)
..+.|...
T Consensus 474 pds~n~p~ 481 (553)
T KOG4242|consen 474 PDSLNLPE 481 (553)
T ss_pred CCCCCCcc
Confidence 66655543
No 113
>PTZ00087 thrombosponding-related protein; Provisional
Probab=22.55 E-value=2e+02 Score=27.12 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=6.0
Q ss_pred HHHHHHhhhhhcchhh
Q 036984 555 IAIIGIIGVLYVNPYW 570 (603)
Q Consensus 555 ~~~~~~~~~~~~~~~~ 570 (603)
+++++++.++|...+.
T Consensus 306 v~vi~v~~ily~ify~ 321 (340)
T PTZ00087 306 VLIICVMGILYHIFYK 321 (340)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3333333444333333
No 114
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=20.81 E-value=33 Score=35.56 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhhhhcchhhhhHHHh
Q 036984 552 SYGIAIIGIIGVLYVNPYWRRRWFY 576 (603)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (603)
++++++++++++++.+++++|+++.
T Consensus 362 avlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 362 AVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHhheeeeehhcccccc
Confidence 3333444444444455555555544
No 115
>KOG2087 consensus Glycoprotein hormone receptor [Signal transduction mechanisms]
Probab=20.33 E-value=6.1 Score=38.76 Aligned_cols=31 Identities=10% Similarity=-0.027 Sum_probs=26.8
Q ss_pred hHHHhhhhhhcceEEEEEEeeee-eehhhcCC
Q 036984 572 RRWFYLVEVCMTSCYYFVGDNLI-LKRFYRGR 602 (603)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 602 (603)
.+.+...-.++|.+++.+...+| +|.+++||
T Consensus 59 ~~~li~~la~ad~~mGiYl~~ia~vD~~~~ge 90 (363)
T KOG2087|consen 59 HRFLICNLAFADLLMGIYLGLIASVDAKTRGE 90 (363)
T ss_pred hHHHHHHHHHHHHHcchHHHHHHHhhHHHHHH
Confidence 55666777899999999999999 99999986
Done!