Query 036984
Match_columns 603
No_of_seqs 393 out of 4229
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 12:14:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.4E-55 1.1E-59 487.6 36.9 472 31-522 199-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.7E-51 1.6E-55 454.2 36.5 453 31-512 177-721 (768)
3 3t6q_A CD180 antigen; protein- 100.0 9.7E-49 3.3E-53 426.1 34.9 500 25-542 26-601 (606)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.8E-48 1.3E-52 427.1 40.0 500 5-512 25-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 3.6E-48 1.2E-52 435.4 35.5 471 23-513 16-565 (844)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-46 3.8E-51 409.9 33.6 454 25-513 25-563 (606)
7 2z63_A TOLL-like receptor 4, v 100.0 2.7E-45 9.1E-50 396.3 29.6 440 29-512 25-535 (570)
8 1ziw_A TOLL-like receptor 3; i 100.0 7.1E-44 2.4E-48 393.0 41.5 487 8-507 7-596 (680)
9 3t6q_A CD180 antigen; protein- 100.0 4.6E-44 1.6E-48 389.3 35.2 466 5-488 33-564 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 3.8E-45 1.3E-49 410.9 24.9 479 4-521 23-592 (844)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-43 9.5E-48 383.1 31.8 445 5-489 32-563 (606)
12 2z81_A CD282 antigen, TOLL-lik 100.0 9E-44 3.1E-48 382.3 24.6 429 25-512 19-514 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 4.8E-42 1.6E-46 370.8 31.3 440 5-489 28-536 (570)
14 4g8a_A TOLL-like receptor 4; l 100.0 8.8E-42 3E-46 373.8 32.1 490 21-543 41-622 (635)
15 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-42 8.3E-47 368.5 24.0 432 8-512 3-485 (520)
16 4eco_A Uncharacterized protein 100.0 3.2E-42 1.1E-46 374.5 24.0 421 32-511 81-603 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 1.8E-41 6.3E-46 374.2 27.7 370 80-509 447-865 (876)
18 4eco_A Uncharacterized protein 100.0 2.8E-41 9.7E-46 367.0 26.4 335 97-489 239-605 (636)
19 3v47_A TOLL-like receptor 5B a 100.0 3.4E-39 1.2E-43 338.3 32.3 367 31-489 29-413 (455)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-39 8E-44 348.3 30.9 416 31-512 30-514 (562)
21 4ecn_A Leucine-rich repeat pro 100.0 4.2E-40 1.4E-44 363.4 24.9 422 32-510 323-842 (876)
22 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-40 6.6E-45 353.8 15.8 403 35-509 3-458 (520)
23 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-38 4.2E-43 342.4 29.6 447 31-509 4-487 (549)
24 3v47_A TOLL-like receptor 5B a 100.0 6.3E-39 2.2E-43 336.3 25.8 355 58-512 30-412 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-37 4.5E-42 334.6 27.2 413 4-488 30-514 (562)
26 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-37 1.2E-41 337.4 30.6 426 5-488 52-584 (635)
27 2id5_A Lingo-1, leucine rich r 100.0 2.3E-36 7.7E-41 318.6 28.4 346 61-512 14-360 (477)
28 1o6v_A Internalin A; bacterial 100.0 2.9E-35 1E-39 308.7 34.1 344 31-485 45-389 (466)
29 1o6v_A Internalin A; bacterial 100.0 3.6E-35 1.2E-39 308.0 30.8 346 55-509 43-389 (466)
30 2id5_A Lingo-1, leucine rich r 100.0 1.8E-35 6E-40 311.8 23.9 349 35-491 14-363 (477)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-34 4.4E-39 301.2 28.5 354 30-491 40-394 (457)
32 3o6n_A APL1; leucine-rich repe 100.0 8.3E-35 2.8E-39 298.3 25.6 333 56-510 43-376 (390)
33 1jl5_A Outer protein YOPM; leu 100.0 2.5E-34 8.4E-39 298.9 27.7 269 4-349 10-291 (454)
34 3o6n_A APL1; leucine-rich repe 100.0 9E-34 3.1E-38 290.6 25.3 310 31-463 44-354 (390)
35 3oja_B Anopheles plasmodium-re 100.0 7.4E-34 2.5E-38 307.0 25.8 334 56-511 49-383 (597)
36 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-32 4.7E-37 286.0 31.2 347 52-512 36-391 (457)
37 1jl5_A Outer protein YOPM; leu 100.0 1.6E-32 5.6E-37 285.2 31.0 373 1-509 30-430 (454)
38 4fmz_A Internalin; leucine ric 100.0 4.2E-32 1.5E-36 273.7 32.0 82 399-483 264-345 (347)
39 4fmz_A Internalin; leucine ric 100.0 1.4E-32 4.8E-37 277.2 27.9 303 31-461 43-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 1.5E-32 5.2E-37 296.7 26.0 311 31-464 50-361 (597)
41 1ogq_A PGIP-2, polygalacturona 100.0 8.8E-33 3E-37 273.6 19.5 257 204-517 51-312 (313)
42 1xku_A Decorin; proteoglycan, 100.0 3.1E-30 1.1E-34 257.9 28.6 289 58-482 31-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-30 5.1E-35 260.4 26.1 287 59-482 34-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 1.3E-29 4.6E-34 253.3 29.1 291 81-506 31-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 5.3E-30 1.8E-34 256.4 25.8 289 82-506 34-331 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 3.6E-34 1.2E-38 300.7 -8.1 159 5-166 3-182 (461)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-33 4.5E-38 296.4 -4.8 136 31-167 2-155 (461)
48 1ogq_A PGIP-2, polygalacturona 100.0 5.1E-30 1.8E-34 253.7 19.6 249 81-482 50-302 (313)
49 2z80_A TOLL-like receptor 2, v 100.0 4.5E-28 1.5E-32 244.6 16.3 109 56-167 29-137 (353)
50 3zyj_A Leucine-rich repeat-con 100.0 8.7E-27 3E-31 242.4 24.5 250 206-512 46-296 (440)
51 2z66_A Variable lymphocyte rec 99.9 5.1E-27 1.7E-31 232.0 20.2 249 206-511 10-264 (306)
52 3zyi_A Leucine-rich repeat-con 99.9 1.7E-26 5.8E-31 241.1 24.0 232 227-512 75-307 (452)
53 3ogk_B Coronatine-insensitive 99.9 5.5E-30 1.9E-34 277.7 -3.7 381 56-486 110-528 (592)
54 2z80_A TOLL-like receptor 2, v 99.9 3.7E-27 1.3E-31 237.9 17.1 204 31-293 30-236 (353)
55 2z66_A Variable lymphocyte rec 99.9 7.9E-27 2.7E-31 230.6 19.1 248 35-349 10-262 (306)
56 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-26 9.1E-31 224.3 20.7 225 61-349 14-239 (285)
57 4fcg_A Uncharacterized protein 99.9 4.3E-26 1.5E-30 226.9 19.0 223 227-507 81-313 (328)
58 3zyj_A Leucine-rich repeat-con 99.9 7.6E-26 2.6E-30 235.3 21.0 247 34-324 45-292 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 7.4E-26 2.5E-30 236.2 20.7 247 34-324 56-303 (452)
60 1ozn_A Reticulon 4 receptor; N 99.9 9.6E-26 3.3E-30 220.3 20.0 206 254-509 32-239 (285)
61 4fcg_A Uncharacterized protein 99.9 1.8E-25 6.1E-30 222.4 20.4 235 57-348 80-314 (328)
62 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-24 5.5E-29 231.8 28.2 113 32-165 40-152 (622)
63 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-24 4.9E-29 232.2 26.1 93 59-166 41-133 (622)
64 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-26 7.5E-31 228.3 9.1 215 60-348 12-227 (317)
65 2p1m_B Transport inhibitor res 99.9 2.1E-28 7.1E-33 265.4 -8.4 227 219-485 281-520 (594)
66 3oja_A Leucine-rich immune mol 99.9 9.4E-26 3.2E-30 236.6 12.1 246 201-511 32-285 (487)
67 3ogk_B Coronatine-insensitive 99.9 4.2E-27 1.4E-31 255.0 0.9 395 3-479 110-546 (592)
68 2o6q_A Variable lymphocyte rec 99.9 4.9E-24 1.7E-28 206.2 21.2 203 255-510 17-220 (270)
69 1wwl_A Monocyte differentiatio 99.9 1.5E-26 5.2E-31 228.9 3.1 251 204-509 44-310 (312)
70 3o53_A Protein LRIM1, AGAP0063 99.9 9.9E-26 3.4E-30 223.5 8.1 244 202-510 33-277 (317)
71 1wwl_A Monocyte differentiatio 99.9 6.3E-26 2.1E-30 224.5 6.4 84 80-167 42-134 (312)
72 2z62_A TOLL-like receptor 4, v 99.9 4.1E-24 1.4E-28 207.7 18.7 208 254-511 28-240 (276)
73 1p9a_G Platelet glycoprotein I 99.9 7.7E-24 2.6E-28 206.6 19.5 110 399-509 99-209 (290)
74 3oja_A Leucine-rich immune mol 99.9 1.9E-24 6.6E-29 226.6 15.9 220 226-511 33-253 (487)
75 3rfs_A Internalin B, repeat mo 99.9 5.4E-23 1.8E-27 199.1 19.9 226 205-495 21-246 (272)
76 2z62_A TOLL-like receptor 4, v 99.9 6.4E-23 2.2E-27 199.3 19.3 209 227-489 28-242 (276)
77 2o6q_A Variable lymphocyte rec 99.9 3.1E-22 1.1E-26 193.5 22.6 205 228-488 17-222 (270)
78 2p1m_B Transport inhibitor res 99.9 6.1E-26 2.1E-30 246.0 -5.7 400 30-507 64-518 (594)
79 1p9a_G Platelet glycoprotein I 99.9 1.4E-21 4.9E-26 190.5 21.4 205 223-486 6-210 (290)
80 3rfs_A Internalin B, repeat mo 99.9 6.4E-22 2.2E-26 191.5 17.6 214 228-507 20-234 (272)
81 4glp_A Monocyte differentiatio 99.9 1.1E-21 3.8E-26 193.7 15.3 230 204-484 65-307 (310)
82 3m19_A Variable lymphocyte rec 99.9 5.3E-21 1.8E-25 182.8 18.7 212 254-520 14-232 (251)
83 3m19_A Variable lymphocyte rec 99.9 6.6E-21 2.3E-25 182.1 19.0 181 227-463 14-194 (251)
84 3goz_A Leucine-rich repeat-con 99.9 1.8E-22 6.2E-27 204.0 7.0 171 254-465 109-301 (362)
85 1h6u_A Internalin H; cell adhe 99.9 1.2E-20 4E-25 186.0 18.5 195 223-485 37-231 (308)
86 4glp_A Monocyte differentiatio 99.9 2.3E-21 8E-26 191.4 13.0 210 57-292 63-285 (310)
87 3goz_A Leucine-rich repeat-con 99.9 6.3E-23 2.2E-27 207.4 1.4 267 37-355 3-304 (362)
88 2xwt_C Thyrotropin receptor; s 99.8 6.7E-21 2.3E-25 180.7 14.1 195 255-505 32-236 (239)
89 2ca6_A RAN GTPase-activating p 99.8 7.7E-23 2.6E-27 208.9 -0.4 44 97-140 24-71 (386)
90 2ast_B S-phase kinase-associat 99.8 2.5E-22 8.6E-27 201.1 3.2 258 32-357 47-315 (336)
91 1h6u_A Internalin H; cell adhe 99.8 2.1E-20 7.3E-25 184.0 16.7 195 250-509 37-231 (308)
92 2xwt_C Thyrotropin receptor; s 99.8 8.9E-21 3E-25 179.8 13.3 198 227-482 31-237 (239)
93 2ca6_A RAN GTPase-activating p 99.8 5.4E-22 1.9E-26 202.6 1.9 249 219-509 24-317 (386)
94 2ast_B S-phase kinase-associat 99.8 8.2E-21 2.8E-25 190.1 9.1 245 204-509 48-307 (336)
95 2o6s_A Variable lymphocyte rec 99.8 1.5E-19 5E-24 167.5 16.8 181 257-496 10-190 (208)
96 4ay9_X Follicle-stimulating ho 99.8 3.1E-19 1E-23 179.3 15.1 226 227-509 30-259 (350)
97 4ay9_X Follicle-stimulating ho 99.8 1.7E-18 5.8E-23 173.9 20.1 239 35-345 12-256 (350)
98 2v9t_B SLIT homolog 2 protein 99.8 4.7E-19 1.6E-23 165.2 14.4 134 311-485 32-166 (220)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 6.4E-19 2.2E-23 164.3 14.0 155 282-488 14-170 (220)
100 2xot_A Amphoterin-induced prot 99.8 3.3E-19 1.1E-23 179.8 11.8 178 256-486 20-204 (361)
101 1h6t_A Internalin B; cell adhe 99.8 2.2E-18 7.4E-23 168.1 16.8 173 250-485 42-214 (291)
102 2o6s_A Variable lymphocyte rec 99.8 6.1E-19 2.1E-23 163.3 12.1 136 29-167 25-161 (208)
103 3cvr_A Invasion plasmid antige 99.8 7.8E-19 2.7E-23 185.5 14.4 187 228-495 60-254 (571)
104 3e6j_A Variable lymphocyte rec 99.8 4.7E-18 1.6E-22 159.5 15.7 156 280-488 20-176 (229)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 4.4E-18 1.5E-22 158.6 15.3 157 257-465 14-170 (220)
106 2xot_A Amphoterin-induced prot 99.8 1.5E-18 5.2E-23 175.0 12.7 178 230-463 21-204 (361)
107 2v9t_B SLIT homolog 2 protein 99.8 7.5E-18 2.6E-22 157.0 15.8 154 257-463 14-167 (220)
108 3e6j_A Variable lymphocyte rec 99.8 7.3E-18 2.5E-22 158.2 15.0 156 256-465 21-176 (229)
109 1h6t_A Internalin B; cell adhe 99.8 7E-18 2.4E-22 164.5 15.4 173 223-462 42-214 (291)
110 1m9s_A Internalin B; cell inva 99.8 6.6E-18 2.2E-22 180.5 16.4 189 205-462 23-211 (605)
111 3cvr_A Invasion plasmid antige 99.7 3E-17 1E-21 173.3 17.6 179 254-509 59-244 (571)
112 1m9s_A Internalin B; cell inva 99.7 2E-17 6.9E-22 176.7 15.6 190 229-486 23-212 (605)
113 1w8a_A SLIT protein; signaling 99.7 2.1E-17 7.1E-22 150.5 13.0 111 399-512 77-187 (192)
114 4ezg_A Putative uncharacterize 99.7 3.4E-17 1.2E-21 149.9 13.1 85 251-348 41-125 (197)
115 1xeu_A Internalin C; cellular 99.7 1.9E-17 6.6E-22 158.7 10.3 171 252-486 17-187 (263)
116 4ezg_A Putative uncharacterize 99.7 3.3E-17 1.1E-21 150.0 9.6 151 278-484 43-194 (197)
117 1xeu_A Internalin C; cellular 99.7 5.1E-17 1.8E-21 155.8 9.3 168 228-463 20-187 (263)
118 2wfh_A SLIT homolog 2 protein 99.7 3.7E-16 1.3E-20 142.1 14.1 112 400-512 31-143 (193)
119 1dce_A Protein (RAB geranylger 99.7 2.5E-19 8.5E-24 190.4 -8.5 65 399-465 485-550 (567)
120 1w8a_A SLIT protein; signaling 99.7 2.4E-16 8.2E-21 143.5 12.2 113 400-512 29-143 (192)
121 3sb4_A Hypothetical leucine ri 99.7 1.8E-16 6E-21 157.8 10.7 288 31-342 24-328 (329)
122 3sb4_A Hypothetical leucine ri 99.6 2.3E-16 8E-21 156.9 7.9 290 4-318 24-328 (329)
123 2ell_A Acidic leucine-rich nuc 99.6 8.9E-16 3E-20 136.6 10.2 86 399-484 70-160 (168)
124 1dce_A Protein (RAB geranylger 99.6 4.9E-18 1.7E-22 180.4 -5.8 202 251-500 346-565 (567)
125 4fdw_A Leucine rich hypothetic 99.6 4.4E-14 1.5E-18 143.4 22.4 82 80-167 112-193 (401)
126 2wfh_A SLIT homolog 2 protein 99.6 6.3E-15 2.2E-19 134.0 14.5 131 35-172 13-144 (193)
127 4b8c_D Glucose-repressible alc 99.6 3.4E-16 1.2E-20 171.6 6.2 143 303-490 216-360 (727)
128 4b8c_D Glucose-repressible alc 99.6 1.6E-16 5.3E-21 174.2 3.0 212 204-484 174-404 (727)
129 2ell_A Acidic leucine-rich nuc 99.6 3E-15 1E-19 133.1 9.4 135 29-167 21-160 (168)
130 2je0_A Acidic leucine-rich nuc 99.6 2.2E-15 7.7E-20 131.0 7.8 81 399-479 63-148 (149)
131 4fdw_A Leucine rich hypothetic 99.6 1.5E-13 5.1E-18 139.5 22.2 248 52-347 130-382 (401)
132 4fs7_A Uncharacterized protein 99.6 1.1E-13 3.8E-18 141.2 21.1 83 396-481 293-376 (394)
133 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.4E-19 130.2 12.5 114 399-512 27-141 (177)
134 2o6r_A Variable lymphocyte rec 99.6 5E-14 1.7E-18 126.4 15.4 130 34-169 9-139 (177)
135 2je0_A Acidic leucine-rich nuc 99.6 6.2E-15 2.1E-19 128.2 8.6 129 31-163 16-149 (149)
136 3g39_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 125.4 10.6 109 401-512 10-119 (170)
137 1a9n_A U2A', U2A'; complex (nu 99.5 2.7E-14 9.2E-19 128.0 7.5 85 399-484 63-153 (176)
138 4fs7_A Uncharacterized protein 99.5 9.1E-13 3.1E-17 134.3 19.8 219 222-505 157-376 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.5 5E-14 1.7E-18 126.2 8.5 129 31-167 18-153 (176)
140 2r9u_A Variable lymphocyte rec 99.5 1.4E-13 4.7E-18 122.7 10.7 106 403-511 15-121 (174)
141 3g39_A Variable lymphocyte rec 99.4 8.6E-13 2.9E-17 117.1 12.6 106 60-168 11-116 (170)
142 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 116.1 12.6 105 61-168 15-119 (174)
143 1ds9_A Outer arm dynein; leuci 99.4 1.4E-15 4.7E-20 139.3 -7.4 63 399-463 92-155 (198)
144 4gt6_A Cell surface protein; l 99.4 3E-11 1E-15 123.1 23.0 109 52-164 57-170 (394)
145 1ds9_A Outer arm dynein; leuci 99.4 7.9E-15 2.7E-19 134.2 -4.1 151 254-461 18-185 (198)
146 4gt6_A Cell surface protein; l 99.3 1.4E-10 4.8E-15 118.1 23.1 92 70-164 51-147 (394)
147 2ifg_A High affinity nerve gro 99.3 7.2E-12 2.5E-16 125.4 9.3 103 405-510 13-118 (347)
148 3un9_A NLR family member X1; l 99.3 1.9E-14 6.6E-19 144.6 -10.4 141 26-167 66-224 (372)
149 3un9_A NLR family member X1; l 99.3 2.3E-13 7.8E-18 136.8 -2.9 14 448-461 239-252 (372)
150 2ifg_A High affinity nerve gro 99.1 7.8E-11 2.7E-15 117.9 9.7 105 62-170 12-119 (347)
151 4h09_A Hypothetical leucine ri 99.1 1.4E-08 4.9E-13 102.6 23.2 63 395-458 281-343 (379)
152 4h09_A Hypothetical leucine ri 99.1 2E-08 6.7E-13 101.6 22.6 84 396-481 259-343 (379)
153 2ra8_A Uncharacterized protein 98.8 7.5E-09 2.6E-13 102.9 6.5 63 399-461 251-320 (362)
154 2ra8_A Uncharacterized protein 98.7 2.6E-08 8.7E-13 99.1 7.0 59 399-459 278-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 2E-08 6.9E-13 90.0 2.4 41 308-348 33-78 (185)
156 3rw6_A Nuclear RNA export fact 98.5 7.2E-08 2.5E-12 90.7 4.1 66 29-95 167-234 (267)
157 1io0_A Tropomodulin; LRR prote 98.4 3.5E-08 1.2E-12 88.4 1.2 121 327-484 28-164 (185)
158 3rw6_A Nuclear RNA export fact 98.3 6.7E-07 2.3E-11 84.1 5.3 65 398-464 168-236 (267)
159 3e4g_A ATP synthase subunit S, 98.1 1E-06 3.5E-11 76.7 2.7 82 58-139 61-149 (176)
160 3e4g_A ATP synthase subunit S, 98.0 3.4E-06 1.2E-10 73.4 3.5 36 311-346 61-96 (176)
161 3rfe_A Platelet glycoprotein I 97.5 0.00018 6.2E-09 59.6 6.8 37 473-509 33-69 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 4.4E-05 1.5E-09 67.7 2.0 18 331-348 66-83 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.2 0.0001 3.5E-09 65.4 2.0 88 397-484 67-170 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.0024 8E-08 52.8 7.0 35 107-141 33-67 (130)
165 2lz0_A Uncharacterized protein 67.0 14 0.00047 28.2 6.2 13 124-136 38-50 (100)
166 2lz0_A Uncharacterized protein 66.7 7.6 0.00026 29.7 4.6 45 117-163 8-52 (100)
167 2l6w_A Beta-type platelet-deri 24.4 24 0.00081 21.3 0.0 6 565-570 28-33 (39)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-55 Score=487.57 Aligned_cols=472 Identities=31% Similarity=0.435 Sum_probs=314.1
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE 109 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (603)
+++|++|++++|.+.+. .+. +.++++|++|++++|.+++..+..+. +++|++|++++|.+.+..|.. .+++|++
T Consensus 199 l~~L~~L~Ls~n~l~~~--~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTG--IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp CTTCCEEECCSSCCCSC--CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred CCcCCEEECcCCcCCCC--Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 34444444444444331 111 44555555555555555444444444 455555555555544433332 4444555
Q ss_pred EeccCCCCccCcCccCCCC-CCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccc
Q 036984 110 LYIDNNDLSGSLPLCLTNL-TSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI 188 (603)
Q Consensus 110 L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~ 188 (603)
|++++|.+++.+|..+.+. ++|++|++++|.+++.+|. .+..+++|++|++++|.+.+..+...+.++++|+.+++..
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 5555555544555555543 6666666666666655555 5666777777777777666555544455566666655552
Q ss_pred eeeeccC-------------------------CCCCCC--cccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccC
Q 036984 189 YLETESH-------------------------YNSLTP--KFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSG 241 (603)
Q Consensus 189 ~~~~~~~-------------------------~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~ 241 (603)
+...... ...+.. ..+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 2221111 111111 3456777777777666677777777788888888887777
Q ss_pred CCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCc----------------ccccCCcCcccCCc
Q 036984 242 EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF----------------NDLSYNRLQGSIPN 305 (603)
Q Consensus 242 ~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l----------------~~l~~~~~~~~~~~ 305 (603)
..|.. +..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+ +++++|.+.+.+|.
T Consensus 433 ~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 433 TIPSS---LGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp CCCGG---GGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cccHH---HhcCCCCCEEECCCCcccCcCCHHHcC-CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 77765 566777888888888877667665554 77888888887765 35566777777777
Q ss_pred cccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEec
Q 036984 306 WIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSP 385 (603)
Q Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (603)
+++.+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|..+........... ........+..
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~--------~~~~~~~~~~~ 580 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF--------IAGKRYVYIKN 580 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST--------TCSCEEEEEEC
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc--------ccccccccccc
Confidence 7777777777777777777777777777777777777777777777776654331111000 00000000000
Q ss_pred C----------------C---------------------CCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCE
Q 036984 386 N----------------G---------------------SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA 428 (603)
Q Consensus 386 ~----------------~---------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 428 (603)
. + ........+..+++|+.|++++|++++.+|..++.+++|+.
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 660 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence 0 0 00001123455789999999999999999999999999999
Q ss_pred EecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcC
Q 036984 429 LNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF 507 (603)
Q Consensus 429 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~ 507 (603)
|+|++|++++.+|..|+++++|+.||+++|++++.+| .+..+++|++|++++|+++|.+|.. +++.++....+.|||.
T Consensus 661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPG 739 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTE
T ss_pred EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCch
Confidence 9999999999999999999999999999999999999 8999999999999999999999985 7888999999999999
Q ss_pred CCCCCCCCCCCCCCC
Q 036984 508 LYGQPLSKSCDDNGL 522 (603)
Q Consensus 508 ~c~~~~~~~C~~~~~ 522 (603)
+|+.|+. .|.....
T Consensus 740 Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 740 LCGYPLP-RCDPSNA 753 (768)
T ss_dssp EESTTSC-CCCSCC-
T ss_pred hcCCCCc-CCCCCcc
Confidence 9999987 8975543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-51 Score=454.20 Aligned_cols=453 Identities=26% Similarity=0.339 Sum_probs=287.3
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE 109 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (603)
+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+. +. +++|++|++++|.+++..|..+.++++|++
T Consensus 177 l~~L~~L~Ls~n~l~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 177 CGELKHLAISGNKISGD----VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp CTTCCEEECCSSEEESC----CBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred CCCCCEEECCCCccccc----CCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence 44455555555544431 1234556666666666665554444 33 566666666666666555556666666666
Q ss_pred EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984 110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY 189 (603)
Q Consensus 110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~ 189 (603)
|++++|.+++..|.. .+++|++|++++|.+++.+|......+++|++|++++|.+.+..+ ..+.++++|+.+++..+
T Consensus 252 L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSN 328 (768)
T ss_dssp EECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC-GGGGGCTTCCEEECCSS
T ss_pred EECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc-hHHhcCCCccEEECCCC
Confidence 666666665544433 556666666666666555555222233666666666666653322 34555566666665532
Q ss_pred eee-ccCCCCCCCcccccEEeccCCCCCCCcChhhccCC-CCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccc
Q 036984 190 LET-ESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQH-DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQ 267 (603)
Q Consensus 190 ~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~ 267 (603)
... ......+..+++|+.|++++|.+.+.+|..+..++ +|+.|++++|.+.+.+|.++.. ..+++|++|++++|.+.
T Consensus 329 ~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ-NPKNTLQELYLQNNGFT 407 (768)
T ss_dssp EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC-STTCCCCEEECCSSEEE
T ss_pred cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh-cccCCccEEECCCCccc
Confidence 222 11111134455667777777766666666666665 6677777766666655554211 12556777777777776
Q ss_pred ccCChhhhhcCCCCcEEecCCCCcc----------------cccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccc
Q 036984 268 GHIPVEIGTYLPGLMHLNLSRNAFN----------------DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQL 331 (603)
Q Consensus 268 ~~~~~~~~~~l~~L~~L~L~~n~l~----------------~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 331 (603)
+.+|..+.. +++|+.|++++|.+. +++.|.+.+.+|..++.+++|++|++++|++++..|..+
T Consensus 408 ~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 408 GKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp EECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 666655544 677777777766542 334444445555555555555555555555555555555
Q ss_pred cCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCC--CcchhhhhcccceEEECcC
Q 036984 332 CQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPM--GKEETVQILTSMSGIDLSC 409 (603)
Q Consensus 332 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~Ls~ 409 (603)
..+++|++|++++|++++.+|..+..++ .+..+...++.. .....+..+++|+.|++++
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~-------------------~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLE-------------------NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCT-------------------TCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCC-------------------CCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 5555555555555555555555444432 333333333222 2345667788899999999
Q ss_pred CCCcccCchhc---------------------------------------------------------------------
Q 036984 410 NKLTGEIPTQI--------------------------------------------------------------------- 420 (603)
Q Consensus 410 n~l~~~~~~~l--------------------------------------------------------------------- 420 (603)
|.+++.+|..+
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 98877666543
Q ss_pred -cCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCC
Q 036984 421 -GYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFE 498 (603)
Q Consensus 421 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ 498 (603)
..+++|+.|+|++|++++.+|..|+++++|+.|++++|++++.+| .+..+++|+.||+++|+++|.+|..+..++.++
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 335789999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred cccccCCcCCCCCC
Q 036984 499 EDSYEGNPFLYGQP 512 (603)
Q Consensus 499 ~~~l~gn~~~c~~~ 512 (603)
.+++++|++....|
T Consensus 708 ~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 708 EIDLSNNNLSGPIP 721 (768)
T ss_dssp EEECCSSEEEEECC
T ss_pred EEECcCCcccccCC
Confidence 99999998766444
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.7e-49 Score=426.11 Aligned_cols=500 Identities=20% Similarity=0.165 Sum_probs=327.5
Q ss_pred HHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcC
Q 036984 25 QIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCE 103 (603)
Q Consensus 25 ~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~ 103 (603)
.+|....+.+++|++++|.++.. .+..|.++++|++|++++|.+..+.+..|. +++|++|++++|.+.+..|..|++
T Consensus 26 ~iP~~l~~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 26 EIPGTLPNSTECLEFSFNVLPTI--QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCCTTSCTTCCEEECTTCCCSEE--CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred cCcCCCCCcCcEEEccCCccCcC--ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 44444556777777777777642 345677777777777777777777777666 777777777777777766777777
Q ss_pred CCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCc-
Q 036984 104 LVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLK- 182 (603)
Q Consensus 104 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~- 182 (603)
+++|++|++++|.+++..+..++++++|++|++++|.+.+.... .+..+++|++|++++|.+.... ...+..+++|+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 181 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATN 181 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEEC-HHHHHTTTTCCS
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc-cccCCcccCEEEcccCcccccC-hhhhhhhcccce
Confidence 77777777777777765566677777777777777777642212 3444777777777777665322 12333444444
Q ss_pred -eeeccce---eeeccCCC----------------------------------------------CCCCc--ccccEEec
Q 036984 183 -AFNGEIY---LETESHYN----------------------------------------------SLTPK--FQLTSISL 210 (603)
Q Consensus 183 -~l~~~~~---~~~~~~~~----------------------------------------------~~~~~--~~L~~L~l 210 (603)
.++...+ ......+. .+... .+++.+++
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 2332211 11110000 00001 16788888
Q ss_pred cCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCC
Q 036984 211 SGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290 (603)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 290 (603)
++|.+.+..+..+..+++|+.|++++|.++ .+|.+ +..+++|++|++++|.+. .++...+..+++|++|++++|.
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~---l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG---LVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS---CCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCS
T ss_pred ecCccCccCHHHhccccCCCEEeccCCccC-CCChh---hcccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCC
Confidence 888888777777888888888888888887 56665 567788888888888887 3433444457888888888776
Q ss_pred cccccCCcCcccC-CccccCCCCCCEEeccCCcCcccC--CccccCCCCCCEEecCCCcCccCCChhhhcccccccc---
Q 036984 291 FNDLSYNRLQGSI-PNWIDRLPQISYLLLANNYIEGEI--PAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGY--- 364 (603)
Q Consensus 291 l~~l~~~~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~--- 364 (603)
+.. .+ +..++.+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..++.....
T Consensus 337 ~~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 337 KRL--------ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp SCC--------BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred ccc--------ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 531 11 122444556666666666655443 4455555666666666666555545444433321111
Q ss_pred ---cCCCCCCCcCCCCCCeeEEecCCCCC--CcchhhhhcccceEEECcCCCCccc---CchhccCcCcCCEEecccccc
Q 036984 365 ---YDAVAPTWDHASAPALSYFSPNGSPM--GKEETVQILTSMSGIDLSCNKLTGE---IPTQIGYLTRIRALNLSHNNL 436 (603)
Q Consensus 365 ---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls~N~l 436 (603)
.....+.........+..+...+... .....+..+++|++|++++|.+++. .+..+..+++|++|++++|++
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 00011111122334455555444332 3345577799999999999999863 335688999999999999999
Q ss_pred cccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCCCC
Q 036984 437 TGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSK 515 (603)
Q Consensus 437 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~~~ 515 (603)
++..|..|.++++|++|++++|++++.+| .+..++.| .|++++|++++..|..+..++.++.++++|||+.|.++...
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 567 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHH
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHH
Confidence 99999999999999999999999998888 88999999 99999999999889888999999999999999999543210
Q ss_pred -------CCCCCCCCcccccccccccCCCCcccc
Q 036984 516 -------SCDDNGLTTVTTEAYTENEEGGSLIDM 542 (603)
Q Consensus 516 -------~C~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (603)
.-..........|..|+..++....+.
T Consensus 568 ~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~ 601 (606)
T 3t6q_A 568 FLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDV 601 (606)
T ss_dssp HHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGC
T ss_pred HHHHHHhCcccccCCCCCeeCCchHhCCCeeeee
Confidence 000001223445666666666655444
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.8e-48 Score=427.11 Aligned_cols=500 Identities=18% Similarity=0.132 Sum_probs=352.3
Q ss_pred CCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCC
Q 036984 5 KNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSL 83 (603)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L 83 (603)
+++++|++++|.+..... . ....+++|++|++++|.+... .+..|.++++|++|++++|.++.+++..|. +++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~--~-~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA--A-NFTRYSQLTSLDVGFNTISKL--EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCCCCCCG--G-GGGGGTTCSEEECCSSCCCCC--CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCCCCCCcCH--H-HHhCCCcCcEEECCCCccCcc--CHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 468888888877653221 1 122367888888888887753 346678888888888888888888877776 8888
Q ss_pred CEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCccccc--CCCCCcEEEc
Q 036984 84 QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLM--LLTSIEELIL 161 (603)
Q Consensus 84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--~l~~L~~L~l 161 (603)
++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++ ++...+. .+++|++|++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEEC
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhhccccccccEEEC
Confidence 888888888887777778888888888888888887777778888888888888888874 3332333 4577888888
Q ss_pred cCceeeeecCccccCCCC---------------------------CCceeeccceeeeccCCCCCCCcc--cccEEeccC
Q 036984 162 SNNHFQIPISLEPLSNLS---------------------------KLKAFNGEIYLETESHYNSLTPKF--QLTSISLSG 212 (603)
Q Consensus 162 ~~n~~~~~~~~~~l~~L~---------------------------~L~~l~~~~~~~~~~~~~~~~~~~--~L~~L~l~~ 212 (603)
++|.++...+ ..+..+. +|+.+++..+.........+.... +|+.|++++
T Consensus 179 ~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 179 SSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp TTCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred CCCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence 8887763322 2222222 233333332111111112222222 377777777
Q ss_pred CCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCc------------------------------cccccCCccEEEcc
Q 036984 213 YRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLM------------------------------PIHCLQKLATLDVS 262 (603)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~------------------------------~~~~l~~L~~L~Ls 262 (603)
|.+.+..+..+..+++|+.|++++|.+.+..|.++. .+..+++|++|+++
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence 777666666677777777777777766654443211 24567788888888
Q ss_pred CccccccCChhhhhcCCCCcEEecCCCCc--------------------ccccCCcCcccCCccccCCCCCCEEeccCCc
Q 036984 263 NNFFQGHIPVEIGTYLPGLMHLNLSRNAF--------------------NDLSYNRLQGSIPNWIDRLPQISYLLLANNY 322 (603)
Q Consensus 263 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l--------------------~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 322 (603)
+|.+. .++...+..+++|++|++++|.+ .+++.|.+.+..|..+..+++|++|++++|.
T Consensus 338 ~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 338 DNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp SCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc
Confidence 88888 45555566688999999988752 3456777877778888889999999999999
Q ss_pred CcccCC-ccccCCCCCCEEecCCCcCccCCChhhhcccccccc------cCCCCCC-CcCCCCCCeeEEecCC--CCCCc
Q 036984 323 IEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGY------YDAVAPT-WDHASAPALSYFSPNG--SPMGK 392 (603)
Q Consensus 323 l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~ 392 (603)
+.+.++ ..+.++++|++|++++|++++..+..+...+..... ....... ........+..+...+ .....
T Consensus 417 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~ 496 (680)
T 1ziw_A 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496 (680)
T ss_dssp CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC
Confidence 876554 678888999999999998877666665544422211 0000001 1122334444444433 33344
Q ss_pred chhhhhcccceEEECcCCCCcccCc--------hhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccC
Q 036984 393 EETVQILTSMSGIDLSCNKLTGEIP--------TQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI 464 (603)
Q Consensus 393 ~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 464 (603)
...+..+++|+.|++++|.+++..+ ..+..+++|++|+|++|+++...+..|.++++|+.||+++|++++.+
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 576 (680)
T 1ziw_A 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred hhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC
Confidence 4567889999999999999985422 23788899999999999999665567999999999999999999655
Q ss_pred C-CccCCCCCCceecccCcccccCCCccc-ccCCCCcccccCCcCCCCCC
Q 036984 465 P-QLIVLTTLAVFRVAYNNLSGKIPDRVA-QFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 465 ~-~~~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~l~~~~l~gn~~~c~~~ 512 (603)
+ .+..+++|+.|++++|++++..|..+. .++.++.++++||||.|+|+
T Consensus 577 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred HhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 5 578899999999999999988887776 78999999999999999655
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-48 Score=435.43 Aligned_cols=471 Identities=21% Similarity=0.177 Sum_probs=316.1
Q ss_pred hHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCc-CCCCccCccc-CCCCCEEEccCCCCCcCCchh
Q 036984 23 FLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDND-LRDSLLGAWQ-TTSLQELNVASNKLTRNFPLG 100 (603)
Q Consensus 23 ~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~ 100 (603)
+..+|. .++++++|||++|.++.. .+..|.++++|++|++++|. +..+++..|. +++|++|+|++|.+.+..|..
T Consensus 16 L~~vP~-lp~~l~~LdLs~N~i~~i--~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 16 LTQVPQ-VLNTTERLLLSFNYIRTV--TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SSCCCS-SCTTCCEEEEESCCCCEE--CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCC-CCCCcCEEECCCCcCCcc--ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 334444 578888888888888753 44678888888888888884 5566677777 888888888888888877888
Q ss_pred hcCCCCCcEEeccCCCCccCcCcc--CCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCC
Q 036984 101 LCELVLLRELYIDNNDLSGSLPLC--LTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNL 178 (603)
Q Consensus 101 ~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L 178 (603)
|.++++|++|+|++|.+++..|.. |+++++|++|++++|.+++..+...+.++++|++|++++|.+....+ ..+..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~-~~l~~l 171 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE-HELEPL 171 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS-GGGHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH-HHcccc
Confidence 888888888888888887655544 88888888888888888765444468888888888888888764322 233323
Q ss_pred --CCCceeeccceeeeccCCCCCCCc------ccccEEeccCCCCCCCcChhhcc-------------------------
Q 036984 179 --SKLKAFNGEIYLETESHYNSLTPK------FQLTSISLSGYRDDGTFPKFLYH------------------------- 225 (603)
Q Consensus 179 --~~L~~l~~~~~~~~~~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~~~~------------------------- 225 (603)
++|+.+++..+.........+... ..|+.|++++|.+.+..+..+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 444444444222211111111111 24777777777655444333221
Q ss_pred -------------CCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcc
Q 036984 226 -------------QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN 292 (603)
Q Consensus 226 -------------l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 292 (603)
.++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.+.
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV---FETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC---SSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhh---hhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCCC
Confidence 256888888888877666665 5667788888888888874 44444455778888877777664
Q ss_pred cccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCC-hhhhcccccccccCCCCCC
Q 036984 293 DLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIP-FCLVNTALSEGYYDAVAPT 371 (603)
Q Consensus 293 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~~~~~~~~~ 371 (603)
. ..|..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++... ..+..+.+........+..
T Consensus 328 ~--------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~ 399 (844)
T 3j0a_A 328 E--------LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI 399 (844)
T ss_dssp C--------CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC
T ss_pred c--------cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccc
Confidence 3 335556667788888888888877777777778888888888887763211 0111111111111100000
Q ss_pred --------------------CcCCCCCCeeEEecCCCCCC---cchhhhhcccceEEECcCCCCc-----ccCchhccCc
Q 036984 372 --------------------WDHASAPALSYFSPNGSPMG---KEETVQILTSMSGIDLSCNKLT-----GEIPTQIGYL 423 (603)
Q Consensus 372 --------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~l~~l 423 (603)
......+.+..+...++... ....+..+++|+.|++++|.++ +..+..|..+
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 479 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence 00012223333333222221 1122334667777777777775 3334567889
Q ss_pred CcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCccccc
Q 036984 424 TRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYE 503 (603)
Q Consensus 424 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~ 503 (603)
++|++|+|++|++++..|..|.++++|+.|++++|++++.++.... ++|+.|++++|++++..|..+ ..++.++++
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~ 555 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF---VSLSVLDIT 555 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC---SSCCEEEEE
T ss_pred ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHh---CCcCEEEec
Confidence 9999999999999998889999999999999999999976663322 899999999999999998764 578889999
Q ss_pred CCcCCCCCCC
Q 036984 504 GNPFLYGQPL 513 (603)
Q Consensus 504 gn~~~c~~~~ 513 (603)
||||.|+|+.
T Consensus 556 ~Np~~C~c~~ 565 (844)
T 3j0a_A 556 HNKFICECEL 565 (844)
T ss_dssp EECCCCSSSC
T ss_pred CCCccccccc
Confidence 9999997654
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-46 Score=409.90 Aligned_cols=454 Identities=18% Similarity=0.175 Sum_probs=294.3
Q ss_pred HHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcC
Q 036984 25 QIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCE 103 (603)
Q Consensus 25 ~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~ 103 (603)
.+|...++++++|++++|.++.. .+..|.++++|++|++++|.++++++..|. +++|++|++++|.+.+..|..|++
T Consensus 25 ~ip~~~~~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 25 KVPDDIPSSTKNIDLSFNPLKIL--KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCCTTSCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred cCCCCCCCCcCEEECCCCCcCEe--ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 33444456777777777777642 334677777777777777777777777666 777777777777777766777777
Q ss_pred CCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCc-cCCcccccCCCCCcEEEccCceeeeecC--ccccCCCCC
Q 036984 104 LVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE-SISSSPLMLLTSIEELILSNNHFQIPIS--LEPLSNLSK 180 (603)
Q Consensus 104 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~ 180 (603)
+++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .+.++++|++|++++|.++...+ +..+.+++.
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 7777777777777776666677777777777777777764 3455 67777777777777777664221 112222221
Q ss_pred -CceeeccceeeeccCCCCCCCcccccEEeccCCCCC-------------------------------------------
Q 036984 181 -LKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDD------------------------------------------- 216 (603)
Q Consensus 181 -L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------------------------------------- 216 (603)
+..++...+.........+ ...+|+.|++++|.+.
T Consensus 182 ~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp CCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred ccceeeccCCCcceeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 1123332111111000111 1113444444333221
Q ss_pred ---------------CCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCC
Q 036984 217 ---------------GTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGL 281 (603)
Q Consensus 217 ---------------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L 281 (603)
+..+. +..+++|+.|++++|.+. .+| + +..+++|+.|++++|.+. .+|. + .+++|
T Consensus 261 l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~---l~~~~~L~~L~l~~n~l~-~lp~-~--~l~~L 330 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-D---VPKHFKWQSLSIIRCQLK-QFPT-L--DLPFL 330 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-C---CCTTCCCSEEEEESCCCS-SCCC-C--CCSSC
T ss_pred ccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-h---ccccccCCEEEcccccCc-cccc-C--CCCcc
Confidence 11111 334445555555555443 222 1 334445555555555552 4442 1 24444
Q ss_pred cEEecCCCCc--------------ccccCCcCccc--CCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCC
Q 036984 282 MHLNLSRNAF--------------NDLSYNRLQGS--IPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345 (603)
Q Consensus 282 ~~L~L~~n~l--------------~~l~~~~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 345 (603)
+.|++++|.. +++++|.+.+. .|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|
T Consensus 331 ~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n 409 (606)
T 3vq2_A 331 KSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHS 409 (606)
T ss_dssp CEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTS
T ss_pred ceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCC
Confidence 4444444411 23333444333 36677778888888888888774 4567788888888888888
Q ss_pred cCccCCC-hhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCC--CCcchhhhhcccceEEECcCCCCcc-cCchhcc
Q 036984 346 NLSGHIP-FCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSP--MGKEETVQILTSMSGIDLSCNKLTG-EIPTQIG 421 (603)
Q Consensus 346 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~ 421 (603)
++.+..| ..+..++ .+..+...+.. ......+..+++|++|++++|.+++ .+|..+.
T Consensus 410 ~l~~~~~~~~~~~l~-------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 470 (606)
T 3vq2_A 410 TLKRVTEFSAFLSLE-------------------KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470 (606)
T ss_dssp EEESTTTTTTTTTCT-------------------TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ccCCccChhhhhccc-------------------cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc
Confidence 8876555 3333322 22333332221 1223456678999999999999997 4788899
Q ss_pred CcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccC-CCCc
Q 036984 422 YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFS-TFEE 499 (603)
Q Consensus 422 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~l~~ 499 (603)
.+++|++|++++|++++..|..|.++++|++|++++|++++.+| .+..+++|+.|++++|+++ .+|..+..++ .++.
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF 549 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence 99999999999999999999999999999999999999998878 7889999999999999999 6777788887 5999
Q ss_pred ccccCCcCCCCCCC
Q 036984 500 DSYEGNPFLYGQPL 513 (603)
Q Consensus 500 ~~l~gn~~~c~~~~ 513 (603)
+++++||+.|+++.
T Consensus 550 l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 550 FNLTNNSVACICEH 563 (606)
T ss_dssp EECCSCCCCCSSTT
T ss_pred EEccCCCcccCCcc
Confidence 99999999996654
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-45 Score=396.26 Aligned_cols=440 Identities=19% Similarity=0.214 Sum_probs=264.7
Q ss_pred HhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCC
Q 036984 29 ELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLL 107 (603)
Q Consensus 29 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (603)
..++++++|++++|.++.. .+..|.++++|++|++++|.++++++..|. +++|++|++++|.+++..|..|.++++|
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCSSCCEEECCSCCCCEE--CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CccccccEEEccCCccCcc--ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 3345566666666665532 234556666666666666666666655555 6666666666666666555566666666
Q ss_pred cEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCc-cCCcccccCCCCCcEEEccCceeeeecCccccCCCCCC----c
Q 036984 108 RELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTE-SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKL----K 182 (603)
Q Consensus 108 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L----~ 182 (603)
++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .+.++++|++|++++|.++... ...+..+++| .
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNL 180 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCEEC-GGGGHHHHTCTTCCC
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccceec-HHHccchhccchhhh
Confidence 666666666654444456666666666666666653 2344 5566666666666666554321 1122222222 2
Q ss_pred eeeccceeeeccCCCCCCCcccccEEe-----------------------------------------------------
Q 036984 183 AFNGEIYLETESHYNSLTPKFQLTSIS----------------------------------------------------- 209 (603)
Q Consensus 183 ~l~~~~~~~~~~~~~~~~~~~~L~~L~----------------------------------------------------- 209 (603)
.++...+.........+. ..+|+.++
T Consensus 181 ~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp EEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred hcccCCCCceecCHHHhc-cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 222221110000000010 01233333
Q ss_pred ----ccCC-CCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEE
Q 036984 210 ----LSGY-RDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHL 284 (603)
Q Consensus 210 ----l~~~-~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L 284 (603)
+..+ .+.+..+..+..+++|+.|++++|.+. .+|.+ +..+ +|++|++++|.+. .+|.. .+++|+.|
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~---~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L 330 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF---SYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRL 330 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC---CSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEE
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh---hccC-CccEEeeccCccc-ccCcc---cccccCEE
Confidence 3322 233344555666667777777777665 34544 3334 6666666666665 55542 25566666
Q ss_pred ecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccC--CccccCCCCCCEEecCCCcCccCCChhhhcccccc
Q 036984 285 NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEI--PAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSE 362 (603)
Q Consensus 285 ~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 362 (603)
++++|.+... .+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..++
T Consensus 331 ~l~~n~~~~~--------~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~--- 396 (570)
T 2z63_A 331 TFTSNKGGNA--------FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE--- 396 (570)
T ss_dssp EEESCBSCCB--------CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCT---
T ss_pred eCcCCccccc--------ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccC---
Confidence 6655543211 111 23455555555555554332 34445555555555555555432211 21111
Q ss_pred cccCCCCCCCcCCCCCCeeEEecCCCC---CCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccccccc-c
Q 036984 363 GYYDAVAPTWDHASAPALSYFSPNGSP---MGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT-G 438 (603)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~ 438 (603)
.+..+...+.. ......+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ +
T Consensus 397 ----------------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 397 ----------------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp ----------------TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred ----------------CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence 11111111110 111134566889999999999999889999999999999999999998 5
Q ss_pred cCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984 439 TIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 439 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~ 512 (603)
.+|..+..+++|++|++++|++++..| .+..+++|++|++++|++++..|..+..++.++.+++++||+.|.+|
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 789999999999999999999998877 88899999999999999999888889999999999999999999544
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.1e-44 Score=393.02 Aligned_cols=487 Identities=21% Similarity=0.172 Sum_probs=356.0
Q ss_pred ceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEE
Q 036984 8 EHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQEL 86 (603)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L 86 (603)
+.++++++.+. .+|...++++++|++++|.++.. .+..|.++++|++|++++|.++++++..|. +++|++|
T Consensus 7 ~~~~cs~~~L~------~ip~~~~~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 78 (680)
T 1ziw_A 7 EVADCSHLKLT------QVPDDLPTNITVLNLTHNQLRRL--PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78 (680)
T ss_dssp SEEECCSSCCS------SCCSCSCTTCSEEECCSSCCCCC--CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEE
T ss_pred CeeECCCCCcc------ccccccCCCCcEEECCCCCCCCc--CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEE
Confidence 45666665443 34444568999999999999863 446799999999999999999999999998 9999999
Q ss_pred EccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCcee
Q 036984 87 NVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHF 166 (603)
Q Consensus 87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~ 166 (603)
++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..+. .+..+++|++|++++|.+
T Consensus 79 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 79 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKI 157 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCC
T ss_pred ECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcc
Confidence 9999999987667899999999999999999988888999999999999999999865554 789999999999999988
Q ss_pred eeecCcc-ccCCCCCCceeeccceeeecc---CCCCCC------------------------CcccccEEeccCCCCCCC
Q 036984 167 QIPISLE-PLSNLSKLKAFNGEIYLETES---HYNSLT------------------------PKFQLTSISLSGYRDDGT 218 (603)
Q Consensus 167 ~~~~~~~-~l~~L~~L~~l~~~~~~~~~~---~~~~~~------------------------~~~~L~~L~l~~~~~~~~ 218 (603)
+...+.. ....+++|+.+++..+..... .+.... ...+|+.|++++|.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence 7432211 122456677777663322111 111111 125788999999999888
Q ss_pred cChhhccCCC--CCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCc-----
Q 036984 219 FPKFLYHQHD--LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF----- 291 (603)
Q Consensus 219 ~~~~~~~l~~--L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l----- 291 (603)
.+..+..++. |+.|++++|.+.+..+.+ +..+++|++|++++|.+.+..|. .+..+++|+.|++++|..
T Consensus 238 ~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDS---FAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp CTTTTGGGGGSCCCEEECTTSCCCEECTTT---TTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBCCC---
T ss_pred ChhHhhccCcCCCCEEECCCCCcCccCccc---ccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhhhcccc
Confidence 8888888765 999999999998877776 67789999999999999854443 344477777777765421
Q ss_pred --------------------ccccCCcCcccCCccccCCCCCCEEeccC----------------------------CcC
Q 036984 292 --------------------NDLSYNRLQGSIPNWIDRLPQISYLLLAN----------------------------NYI 323 (603)
Q Consensus 292 --------------------~~l~~~~~~~~~~~~l~~l~~L~~L~L~~----------------------------n~l 323 (603)
+++++|.+.+..+..+..+++|++|++++ |++
T Consensus 314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred cccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 23445555555555555555555555544 445
Q ss_pred cccCCccccCCCCCCEEecCCCcCccCCC-hhhhccccccccc---CCC--CCCCcCCCCCCeeEEecCCCCC----Ccc
Q 036984 324 EGEIPAQLCQLKEVRLIDLSHNNLSGHIP-FCLVNTALSEGYY---DAV--APTWDHASAPALSYFSPNGSPM----GKE 393 (603)
Q Consensus 324 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~ 393 (603)
++..+.++..+++|+.|++++|++++.+| ..+..+....... ... .........+.+..+...+... ...
T Consensus 394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence 55556667777777777777777766555 3444333211110 000 0001112234444444443321 223
Q ss_pred hhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCC--------cCCcCCCCCCEEeCCCCcCcccCC
Q 036984 394 ETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP--------ITFSNLKQIESLDLSYNLLHGKIP 465 (603)
Q Consensus 394 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~ 465 (603)
..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+ ..|.++++|++|++++|+++...+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 456778999999999999998888889999999999999999986532 237888999999999999994444
Q ss_pred -CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcC
Q 036984 466 -QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF 507 (603)
Q Consensus 466 -~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~ 507 (603)
.+..+++|+.|++++|++++..+..+..++.++.+++++|..
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 588999999999999999977777778899999999999964
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.6e-44 Score=389.26 Aligned_cols=466 Identities=19% Similarity=0.146 Sum_probs=344.4
Q ss_pred CCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCC
Q 036984 5 KNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSL 83 (603)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L 83 (603)
+++++|++++|.+..... .. ...+++|++|++++|.+.. ..+..|.++++|++|++++|.++.+.+..|. +++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~--~~-~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN--TT-FSRLINLTFLDLTRCQIYW--IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCCCSEECT--TT-STTCTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CcCcEEEccCCccCcCCh--hH-hccCccceEEECCCCccce--eChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 468999999988753311 11 1347899999999999875 3457799999999999999999998888887 9999
Q ss_pred CEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCc--EEEc
Q 036984 84 QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIE--ELIL 161 (603)
Q Consensus 84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~--~L~l 161 (603)
++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++ ++...+..+++|+ +|++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEEC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeEEec
Confidence 999999999998777889999999999999999987555556669999999999999985 4444788899998 8999
Q ss_pred cCceeeeecCccccCC--------------------CC-------------------------------CCceeecccee
Q 036984 162 SNNHFQIPISLEPLSN--------------------LS-------------------------------KLKAFNGEIYL 190 (603)
Q Consensus 162 ~~n~~~~~~~~~~l~~--------------------L~-------------------------------~L~~l~~~~~~ 190 (603)
++|.+....+. .+.. +. +++.++...+.
T Consensus 187 ~~n~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 187 NGNDIAGIEPG-AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp TTCCCCEECTT-TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred CCCccCccChh-HhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence 99988753321 1111 00 22233333222
Q ss_pred eeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccC
Q 036984 191 ETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHI 270 (603)
Q Consensus 191 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 270 (603)
........+...++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+.+.+
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS---ASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC---GGGCTTCSEEECCSCSSCCBC
T ss_pred cCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh---hhccCcCCEEECCCCCccccc
Confidence 22223333566779999999999887 57778888999999999999988766655 677889999999999888778
Q ss_pred ChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccC
Q 036984 271 PVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGH 350 (603)
Q Consensus 271 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 350 (603)
|...+..+++|++|++++|.+..+. ..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|++++.
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSD------CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEE------ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred chhhhhccCcCCEEECCCCcccccc------CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 7776667889999999888775432 1234455566666666666666666666666666666666666666554
Q ss_pred CChh-hhcccccccc---cCCCC--CCCcCCCCCCeeEEecCCCCCCc-----chhhhhcccceEEECcCCCCcccCchh
Q 036984 351 IPFC-LVNTALSEGY---YDAVA--PTWDHASAPALSYFSPNGSPMGK-----EETVQILTSMSGIDLSCNKLTGEIPTQ 419 (603)
Q Consensus 351 ~~~~-~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 419 (603)
.|.. +..++..... ..... ........+.+..+...+..... ...+..+++|+.|++++|.+++..|..
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence 4322 3322211111 00000 00111234455566555543322 245778999999999999999888999
Q ss_pred ccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCC
Q 036984 420 IGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIP 488 (603)
Q Consensus 420 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p 488 (603)
+..+++|++|+|++|++++..|..|.+++.| .|++++|++++.+| .+..+++|+.|++++|++.+..+
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999999999999999999 99999999998777 67889999999999999998766
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-45 Score=410.88 Aligned_cols=479 Identities=20% Similarity=0.187 Sum_probs=292.0
Q ss_pred CCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCC
Q 036984 4 FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTS 82 (603)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~ 82 (603)
.++|++|+|++|.+..... . ....+++|++|+|++|.... .+.+..|.++++|++|+|++|.+..+.+..|. +++
T Consensus 23 p~~l~~LdLs~N~i~~i~~--~-~~~~l~~L~~LdLs~n~~~~-~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTA--S-SFPFLEQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp CTTCCEEEEESCCCCEECS--S-SCSSCCSCSEEEECTTCCCC-EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCcCEEECCCCcCCccCh--h-HCcccccCeEEeCCCCCCcc-ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 3678888888877653211 1 11237788888888885432 22356788888888888888888888777777 888
Q ss_pred CCEEEccCCCCCcCCchh--hcCCCCCcEEeccCCCCccCcC-ccCCCCCCCCEEEcccCcCCccCCcccccCC--CCCc
Q 036984 83 LQELNVASNKLTRNFPLG--LCELVLLRELYIDNNDLSGSLP-LCLTNLTSLQVLDVSYNQLTESISSSPLMLL--TSIE 157 (603)
Q Consensus 83 L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l--~~L~ 157 (603)
|++|++++|.+.+..|.. |.++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+. .+..+ ++|+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~ 177 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTLS 177 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHCSSC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-HcccccCCccc
Confidence 888888888887755544 7888888888888888876544 4678888888888888887754443 45444 5555
Q ss_pred EEEccCceeeeecCccccCCC-----------------------------------------------------------
Q 036984 158 ELILSNNHFQIPISLEPLSNL----------------------------------------------------------- 178 (603)
Q Consensus 158 ~L~l~~n~~~~~~~~~~l~~L----------------------------------------------------------- 178 (603)
.|++++|.+....+. .+..+
T Consensus 178 ~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 178 FFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred eEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 555555555432211 01111
Q ss_pred ---------CCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCcc
Q 036984 179 ---------SKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMP 249 (603)
Q Consensus 179 ---------~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 249 (603)
.+|+.+++..+.........+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--- 333 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN--- 333 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS---
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH---
Confidence 12222222211111111222333445555555555555444555555555555555555555444443
Q ss_pred ccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccc-----------cCCcCcccCCccccCCCCCCEEec
Q 036984 250 IHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDL-----------SYNRLQGSIPNWIDRLPQISYLLL 318 (603)
Q Consensus 250 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-----------~~~~~~~~~~~~l~~l~~L~~L~L 318 (603)
+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+..+ ++|.+. .+|.. ..+++.|++
T Consensus 334 ~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~l 408 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHL 408 (844)
T ss_dssp CSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEEC
T ss_pred hcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcc-ccccc---ccccceeec
Confidence 444555555555555554 34443444455555555555554322 223332 12221 234555555
Q ss_pred cCCcCcccCC-ccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCC-----CCc
Q 036984 319 ANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSP-----MGK 392 (603)
Q Consensus 319 ~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 392 (603)
++|.+++... ..+..+++|+.|++++|++++..+..... .........+..+... ...
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS----------------ENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC----------------SCTTCCBCEEESCCCSSSCCSCCC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccccc----------------cCCccccccCCCCccccccccccc
Confidence 5555554321 23458899999999999987543221100 0001111122222111 111
Q ss_pred chhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCC
Q 036984 393 EETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTT 472 (603)
Q Consensus 393 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~ 472 (603)
...+..+++|+.|+|++|++++..+..+..+++|++|+|++|++++..+..+. ++|+.||+++|++++.+|.. +++
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~ 548 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVS 548 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSS
T ss_pred hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCC
Confidence 23466789999999999999989898999999999999999999987777766 89999999999999888832 458
Q ss_pred CCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCCCCCCCCCC
Q 036984 473 LAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSCDDNG 521 (603)
Q Consensus 473 L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~~~~C~~~~ 521 (603)
|+.|++++|++.+..+- ..+......++...|+.+....|..+.
T Consensus 549 L~~l~l~~Np~~C~c~~-----~~f~~~~~~~~~~~~~~~~~~~C~~p~ 592 (844)
T 3j0a_A 549 LSVLDITHNKFICECEL-----STFINWLNHTNVTIAGPPADIYCVYPD 592 (844)
T ss_dssp CCEEEEEEECCCCSSSC-----CSHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred cCEEEecCCCccccccc-----HHHHHHHHhcCcccccccccCccCCch
Confidence 99999999999986652 222222224455566666667786543
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.8e-43 Score=383.09 Aligned_cols=445 Identities=20% Similarity=0.227 Sum_probs=296.3
Q ss_pred CCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCC
Q 036984 5 KNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSL 83 (603)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L 83 (603)
++|++|++++|.+..... . ....+++|++|++++|.++. +.+..|.++++|++|++++|.++++++..|. +++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~--~-~~~~l~~L~~L~Ls~n~l~~--i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS--Y-SFSNFSELQWLDLSRCEIET--IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSCCCEECT--T-TTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCcCEEECCCCCcCEeCh--h-hccCCccCcEEeCCCCcccc--cCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 568888888877643221 1 11237788888888888774 2345678888888888888888888777776 8888
Q ss_pred CEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCcc-CcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCc----E
Q 036984 84 QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSG-SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIE----E 158 (603)
Q Consensus 84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~----~ 158 (603)
++|++++|.+.+..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+. .+..+.+|+ +
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLRENPQVNLS 185 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT-TTHHHHHCTTCCCE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh-hhhhhhccccccce
Confidence 888888888887666778888888888888888875 4577888888888888888888753333 455544443 5
Q ss_pred EEccCceeeeecCccccCCCCCCceeeccceee-----------------------------------------------
Q 036984 159 LILSNNHFQIPISLEPLSNLSKLKAFNGEIYLE----------------------------------------------- 191 (603)
Q Consensus 159 L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~----------------------------------------------- 191 (603)
|++++|.++.... ..+... +|+.+++..+..
T Consensus 186 L~l~~n~l~~~~~-~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 186 LDMSLNPIDFIQD-QAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp EECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred eeccCCCcceeCc-ccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 6666666542221 111111 222222110000
Q ss_pred ----------eccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCC---------------
Q 036984 192 ----------TESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNW--------------- 246 (603)
Q Consensus 192 ----------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--------------- 246 (603)
.......+....+|+.++++++.+.. ++ .+..+++|+.|++++|.+ +.+|.+
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSS
T ss_pred hheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcC
Confidence 00000112233345555555554432 22 444444445555544444 233321
Q ss_pred --CccccccCCccEEEccCcccccc--CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCc
Q 036984 247 --LMPIHCLQKLATLDVSNNFFQGH--IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNY 322 (603)
Q Consensus 247 --~~~~~~l~~L~~L~Ls~n~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 322 (603)
...+..+++|++|++++|.+++. ++..+ ..+++|+.|++++|.+.. +|..+..+++|++|++++|.
T Consensus 341 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~---------~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSD-LGTNSLRHLDLSFNGAII---------MSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp CEECCCCCCTTCCEEECCSSCEEEEEECCHHH-HCCSCCCEEECCSCSEEE---------ECCCCTTCTTCCEEECTTSE
T ss_pred ccchhhccCCCCCEEECcCCccCCCcchhhhh-ccCCcccEeECCCCcccc---------chhhccCCCCCCeeECCCCc
Confidence 00134556666666666666532 13333 336677777776666543 34567778899999999999
Q ss_pred CcccCC-ccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCC---cchhhhh
Q 036984 323 IEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMG---KEETVQI 398 (603)
Q Consensus 323 l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 398 (603)
+.+..+ ..+..+++|++|++++|++++..|..+..++ .+..+...+.... ....+..
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT-------------------SLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT-------------------TCCEEECTTCEEGGGEECSCCTT
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC-------------------CCCEEECCCCcCCCcchHHhhcc
Confidence 887776 6788889999999999998877776655433 2333333332211 2334667
Q ss_pred cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCC-CCCcee
Q 036984 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLT-TLAVFR 477 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~-~L~~L~ 477 (603)
+++|+.|++++|.+++..|..+..+++|++|+|++|++++..|..|.++++|++||+++|+++...+.+..++ +|++|+
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEE
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEE
Confidence 8999999999999999889999999999999999999999889999999999999999999994444778887 699999
Q ss_pred cccCcccccCCC
Q 036984 478 VAYNNLSGKIPD 489 (603)
Q Consensus 478 l~~N~l~~~~p~ 489 (603)
+++|++.+..+.
T Consensus 552 l~~N~~~c~c~~ 563 (606)
T 3vq2_A 552 LTNNSVACICEH 563 (606)
T ss_dssp CCSCCCCCSSTT
T ss_pred ccCCCcccCCcc
Confidence 999999987663
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9e-44 Score=382.34 Aligned_cols=429 Identities=20% Similarity=0.203 Sum_probs=300.4
Q ss_pred HHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcC
Q 036984 25 QIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCE 103 (603)
Q Consensus 25 ~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~ 103 (603)
.+|...+++|++|++++|.++.. .+..|.++++|++|++++|.++++++..|. +++|++|++++|.+.+..+..|++
T Consensus 19 ~ip~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 19 SIPSGLTAAMKSLDLSFNKITYI--GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp SCCSCCCTTCCEEECCSSCCCEE--CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred cccccCCCCccEEECcCCccCcc--ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 34444457888888888888753 345788888888888888888888887777 888888888888888877777888
Q ss_pred CCCCcEEeccCCCCccC-cCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCc
Q 036984 104 LVLLRELYIDNNDLSGS-LPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLK 182 (603)
Q Consensus 104 l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 182 (603)
+++|++|++++|.+++. .|..++++++|++|++++|.+.+.++...+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~ 175 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-QSLKSIRDIH 175 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-hhhhccccCc
Confidence 88888888888888753 456788888888888888875456665578888888888888888775433 3455566666
Q ss_pred eeeccceeeeccCCCCCCCcccccEEeccCCCCCCCc-------------------------------ChhhccCCCCCE
Q 036984 183 AFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTF-------------------------------PKFLYHQHDLKN 231 (603)
Q Consensus 183 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------------------------~~~~~~l~~L~~ 231 (603)
.++...+.........+....+|+.|++++|.+.+.. +..+..+++|+.
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 5554422110000000112345666666666554421 112233455566
Q ss_pred EEcCCCcccCCCCC---CCcc-----------------------------ccccCCccEEEccCccccccCChhhhhcCC
Q 036984 232 ADLSHLNLSGEFPN---WLMP-----------------------------IHCLQKLATLDVSNNFFQGHIPVEIGTYLP 279 (603)
Q Consensus 232 L~L~~n~i~~~~~~---~~~~-----------------------------~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~ 279 (603)
+++++|.+.+.... .... ....++|+.|++++|.+. .+|..++..++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 66665554331100 0000 112356777777777776 67777766677
Q ss_pred CCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCC--ccccCCCCCCEEecCCCcCccCCChhhhc
Q 036984 280 GLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIP--AQLCQLKEVRLIDLSHNNLSGHIPFCLVN 357 (603)
Q Consensus 280 ~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 357 (603)
+|+.|++++|.+.+..- ..+..++.+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|.
T Consensus 335 ~L~~L~Ls~N~l~~~~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~---- 404 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYL-----KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD---- 404 (549)
T ss_dssp TCCEEECCSSCCCHHHH-----HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS----
T ss_pred cccEEEccCCccccccc-----cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCCh----
Confidence 88888777776643100 001234567788888888888875432 45777888888888888776 3332
Q ss_pred ccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccccccc
Q 036984 358 TALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT 437 (603)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 437 (603)
.+..+++|+.|++++|.++ .++..+. ++|++|++++|+++
T Consensus 405 -------------------------------------~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~ 444 (549)
T 2z81_A 405 -------------------------------------SCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD 444 (549)
T ss_dssp -------------------------------------CCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCS
T ss_pred -------------------------------------hhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChh
Confidence 1234678999999999998 4444443 68999999999998
Q ss_pred ccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984 438 GTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 438 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~ 512 (603)
+.. ..+++|++|++++|+++ .+|....+++|++|++++|++++..|..+..++.++.+++++|||.|.++
T Consensus 445 ~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 445 SFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 643 57899999999999999 67766789999999999999999999889999999999999999999554
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-42 Score=370.80 Aligned_cols=440 Identities=22% Similarity=0.253 Sum_probs=328.5
Q ss_pred CCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCC
Q 036984 5 KNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSL 83 (603)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L 83 (603)
++++.|++++|.+..... . ....+++|++|++++|+++. +.+..|.++++|++|++++|.++.+++..|. +++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~--~-~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS--Y-SFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSCCCCEECT--T-TTTTCSSCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ccccEEEccCCccCccCh--h-HhhCCCCceEEECCCCcCCc--cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 468999999988753321 1 11338899999999999875 3446789999999999999999999988888 9999
Q ss_pred CEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccC-cCccCCCCCCCCEEEcccCcCCccCCcccccCCCCC----cE
Q 036984 84 QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGS-LPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSI----EE 158 (603)
Q Consensus 84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L----~~ 158 (603)
++|++++|.+.+..+..++++++|++|++++|.+++. +|..|+++++|++|++++|.+++ ++...+..+++| ++
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhh
Confidence 9999999999986666799999999999999999863 68899999999999999999985 444477777777 88
Q ss_pred EEccCceeeeecCccccCCCCCCceeeccce-------------------------------------------------
Q 036984 159 LILSNNHFQIPISLEPLSNLSKLKAFNGEIY------------------------------------------------- 189 (603)
Q Consensus 159 L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~------------------------------------------------- 189 (603)
+++++|.+....+ ..+... +|+.+++..+
T Consensus 182 L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 182 LDLSLNPMNFIQP-GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp EECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred cccCCCCceecCH-HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 9999998764332 122221 2222221110
Q ss_pred ---------eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEE
Q 036984 190 ---------LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLD 260 (603)
Q Consensus 190 ---------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~ 260 (603)
.........+....+|+.+++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|+
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-----~~l~~L~~L~ 331 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-----LKLKSLKRLT 331 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-----CBCSSCCEEE
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-----ccccccCEEe
Confidence 111122234555678999999999887 467777777 9999999999887 4543 3567888888
Q ss_pred ccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEE
Q 036984 261 VSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLI 340 (603)
Q Consensus 261 Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 340 (603)
+++|.+.+..+. ..+++|+.|++++|.+.... ..+..+..+++|++|++++|.+.+..+. +..+++|+.|
T Consensus 332 l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~------~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L 401 (570)
T 2z63_A 332 FTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKG------CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHL 401 (570)
T ss_dssp EESCBSCCBCCC---CBCTTCCEEECCSSCCBEEE------EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEE
T ss_pred CcCCcccccccc---ccCCCCCEEeCcCCccCccc------cccccccccCccCEEECCCCcccccccc-ccccCCCCEE
Confidence 888887655443 34778888888887765332 2244566677777777777777754443 7777777777
Q ss_pred ecCCCcCccCCC-hhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCC--CCcchhhhhcccceEEECcCCCCc-ccC
Q 036984 341 DLSHNNLSGHIP-FCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSP--MGKEETVQILTSMSGIDLSCNKLT-GEI 416 (603)
Q Consensus 341 ~Ls~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~-~~~ 416 (603)
++++|.+.+..| ..+..+ ..+..+...+.. ......+..+++|+.|++++|.++ +.+
T Consensus 402 ~l~~n~l~~~~~~~~~~~l-------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSL-------------------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp ECTTSEEESCTTSCTTTTC-------------------TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred EccCCccccccchhhhhcC-------------------CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence 777777765443 122221 222233222221 122345667899999999999997 568
Q ss_pred chhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCC
Q 036984 417 PTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPD 489 (603)
Q Consensus 417 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~ 489 (603)
|..+..+++|++|++++|++++..|..|.++++|++|++++|++++.+| .+..+++|+.|++++|++++.+|.
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8899999999999999999999889999999999999999999998777 688999999999999999998885
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.8e-42 Score=373.77 Aligned_cols=490 Identities=19% Similarity=0.199 Sum_probs=308.4
Q ss_pred cchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCch
Q 036984 21 TSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPL 99 (603)
Q Consensus 21 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~ 99 (603)
.++.++|.+.++++++|||++|.|+. +.+.+|.++++|++|+|++|+|+.+++++|. +++|++|+|++|++++..+.
T Consensus 41 ~~l~~vP~~lp~~~~~LdLs~N~i~~--l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 41 LNFYKIPDNLPFSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp SCCSSCCSSSCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CCcCccCCCCCcCCCEEEeeCCCCCC--CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 45667777777899999999999985 3456899999999999999999999999998 99999999999999998888
Q ss_pred hhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecC--ccccCC
Q 036984 100 GLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPIS--LEPLSN 177 (603)
Q Consensus 100 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~l~~ 177 (603)
.|.++++|++|++++|++++..+.+|+++++|++|++++|.+++......+..+++|++|++++|+++.... +..+.+
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence 999999999999999999988778899999999999999999753323378899999999999999874322 222222
Q ss_pred CCCCc-eeeccc---eeeeccCC---------------------------------------------------CCCCCc
Q 036984 178 LSKLK-AFNGEI---YLETESHY---------------------------------------------------NSLTPK 202 (603)
Q Consensus 178 L~~L~-~l~~~~---~~~~~~~~---------------------------------------------------~~~~~~ 202 (603)
++.+. ..+... .......+ ..+...
T Consensus 199 l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 22111 111110 00000000 000000
Q ss_pred ccccEEeccCCCCCC---CcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhh-----
Q 036984 203 FQLTSISLSGYRDDG---TFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEI----- 274 (603)
Q Consensus 203 ~~L~~L~l~~~~~~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~----- 274 (603)
..+....+..+.... .....+....+++.+++.++.+....+ +.....++.|++++|.+. .++...
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~-~~~~~~l~~L~ 352 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKFG-QFPTLKLKSLK 352 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-----GGSCCCCSEEEEESCEES-SCCCCBCTTCC
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-----cccchhhhhhhccccccc-CcCcccchhhh
Confidence 111111111111000 011112222333333333333221110 222334444444444433 121110
Q ss_pred --------------hhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEE
Q 036984 275 --------------GTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLI 340 (603)
Q Consensus 275 --------------~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 340 (603)
...+++|+.+++++|.+.... ..+.....+.+|+++++..|.... .+..+..+++|+.+
T Consensus 353 ~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~------~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 353 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG------CCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHL 425 (635)
T ss_dssp EEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEE------ECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEE
T ss_pred hcccccccCCCCcccccccccccchhhcccccccc------ccccchhhhhhhhhhhcccccccc-ccccccccccccch
Confidence 112445555555555442211 222333334444444444444432 22234444455555
Q ss_pred ecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCC--CCCCcchhhhhcccceEEECcCCCC-cccCc
Q 036984 341 DLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG--SPMGKEETVQILTSMSGIDLSCNKL-TGEIP 417 (603)
Q Consensus 341 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~ 417 (603)
++++|......+.. .......+..+.... ........+..+++++.|++++|.+ .+..|
T Consensus 426 ~l~~~~~~~~~~~~------------------~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~ 487 (635)
T 4g8a_A 426 DFQHSNLKQMSEFS------------------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 487 (635)
T ss_dssp ECTTSEEESTTSSC------------------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred hhhhcccccccccc------------------ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc
Confidence 55444443222210 011111112221111 1122334566788999999999975 44577
Q ss_pred hhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCccccc-C
Q 036984 418 TQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQF-S 495 (603)
Q Consensus 418 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-~ 495 (603)
..+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..| .+..+++|++|++++|++++..|+.+..+ +
T Consensus 488 ~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 567 (635)
T 4g8a_A 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567 (635)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCT
T ss_pred hhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhC
Confidence 889999999999999999999999999999999999999999998777 78899999999999999999999999888 5
Q ss_pred CCCcccccCCcCCCCCCCCC-------CCCCCCCCcccccccccccCCCCccccc
Q 036984 496 TFEEDSYEGNPFLYGQPLSK-------SCDDNGLTTVTTEAYTENEEGGSLIDMD 543 (603)
Q Consensus 496 ~l~~~~l~gn~~~c~~~~~~-------~C~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (603)
.++.+++++|||.|+|.... .=..........|+.|+..++....+.+
T Consensus 568 ~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~ 622 (635)
T 4g8a_A 568 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 622 (635)
T ss_dssp TCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred cCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeec
Confidence 79999999999999543210 0000112344568888888887776654
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-42 Score=368.45 Aligned_cols=432 Identities=19% Similarity=0.248 Sum_probs=318.3
Q ss_pred ceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEE
Q 036984 8 EHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQEL 86 (603)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L 86 (603)
++|+++++.+.. +|....++|++|++++|.+++. .+..|.++++|++|++++|.++++.+..|. +++|++|
T Consensus 3 ~~l~ls~n~l~~------ip~~~~~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIH------VPKDLSQKTTILNISQNYISEL--WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSS------CCCSCCTTCSEEECCSSCCCCC--CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred ceEecCCCCccc------ccccccccccEEECCCCccccc--ChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 578888877653 2333447899999999998753 346788999999999999999998888887 8999999
Q ss_pred EccCCCCCcCCchhhcCCCCCcEEeccCCCCcc-CcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCC--cEEEccC
Q 036984 87 NVASNKLTRNFPLGLCELVLLRELYIDNNDLSG-SLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSI--EELILSN 163 (603)
Q Consensus 87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L--~~L~l~~ 163 (603)
++++|++++ +|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|.+.+ ..+..+++| ++|++++
T Consensus 75 ~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 75 DLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp ECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEE
T ss_pred ecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeec
Confidence 999999986 5554 78999999999999986 367889999999999999998874 256777788 9999998
Q ss_pred cee--eeecCccccCC--------------------------CCCCceeecccee------eeccCCCCCCCcccccEEe
Q 036984 164 NHF--QIPISLEPLSN--------------------------LSKLKAFNGEIYL------ETESHYNSLTPKFQLTSIS 209 (603)
Q Consensus 164 n~~--~~~~~~~~l~~--------------------------L~~L~~l~~~~~~------~~~~~~~~~~~~~~L~~L~ 209 (603)
|.+ ....+ ..+.. +++|+.++...+. ........+....+|+.|+
T Consensus 148 n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~ 226 (520)
T 2z7x_B 148 GETYGEKEDP-EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226 (520)
T ss_dssp CTTTTSSCCT-TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred cccccccccc-ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence 877 32211 22322 3333333322110 0000111233344555566
Q ss_pred ccCCCCCCCcChhhc---cCCCCCEEEcCCCcccCCCCCCCccc--cccCCccEEEccCccccccCC-hhhhhc--CCCC
Q 036984 210 LSGYRDDGTFPKFLY---HQHDLKNADLSHLNLSGEFPNWLMPI--HCLQKLATLDVSNNFFQGHIP-VEIGTY--LPGL 281 (603)
Q Consensus 210 l~~~~~~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~~~~~--~~l~~L~~L~Ls~n~~~~~~~-~~~~~~--l~~L 281 (603)
++++.+.+..+..+. ..++|+.|++++|.+.+.+|.++... ..+++|+.+++++|.+ .+| ..++.. .++|
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L 304 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNI 304 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCC
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCce
Confidence 555554432211111 13578888888888887777763211 6678888888888887 466 233321 1568
Q ss_pred cEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc--CCChhhhccc
Q 036984 282 MHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG--HIPFCLVNTA 359 (603)
Q Consensus 282 ~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~ 359 (603)
+.|++++|.+.... ....+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|
T Consensus 305 ~~L~l~~n~l~~~~----------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~------- 367 (520)
T 2z7x_B 305 KNFTVSGTRMVHML----------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA------- 367 (520)
T ss_dssp SEEEEESSCCCCCC----------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH-------
T ss_pred eEEEcCCCcccccc----------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch-------
Confidence 88888888764332 11468899999999999998888899999999999999999974 222
Q ss_pred ccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCch-hccCcCcCCEEecccccccc
Q 036984 360 LSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPT-QIGYLTRIRALNLSHNNLTG 438 (603)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~ 438 (603)
..+..+++|+.|++++|.+++.+|. .+..+++|++|++++|++++
T Consensus 368 ----------------------------------~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 368 ----------------------------------EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp ----------------------------------HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred ----------------------------------HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 2345578999999999999974554 48889999999999999998
Q ss_pred cCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCc-ccccCCCCcccccCCcCCCCCC
Q 036984 439 TIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDR-VAQFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 439 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~l~~~~l~gn~~~c~~~ 512 (603)
..|..+. ++|+.||+++|+++ .+| .+..+++|++|++++|+++ .+|.. +..++.++.+++++||+.|.++
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 8887764 79999999999999 666 6779999999999999999 46654 8889999999999999999443
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.2e-42 Score=374.49 Aligned_cols=421 Identities=17% Similarity=0.197 Sum_probs=279.5
Q ss_pred CCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCc---------------------------------cCcc
Q 036984 32 ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSL---------------------------------LGAW 78 (603)
Q Consensus 32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---------------------------------~~~~ 78 (603)
..++.|+|+++.+.+. .+.+++++++|++|+|++|.+...+ +..+
T Consensus 81 ~~V~~L~L~~~~l~g~--lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR--VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCCEEE--ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCcccCCc--CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhH
Confidence 4788999999988753 4578899999999999988651100 0000
Q ss_pred c--------------------CCCCCEEEc--cCCCCCcCCchhhcCCCCCcEEeccCCCCccC----------------
Q 036984 79 Q--------------------TTSLQELNV--ASNKLTRNFPLGLCELVLLRELYIDNNDLSGS---------------- 120 (603)
Q Consensus 79 ~--------------------~~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~---------------- 120 (603)
. ...++.+.+ .+|++++ +|..++++++|++|+|++|.+++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 0 111222222 2567777 777888888888888888888864
Q ss_pred -cCccCC--CCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCce-eee-ecCccccCC------CCCCceeeccce
Q 036984 121 -LPLCLT--NLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNH-FQI-PISLEPLSN------LSKLKAFNGEIY 189 (603)
Q Consensus 121 -~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~l~~------L~~L~~l~~~~~ 189 (603)
+|..++ ++++|++|++++|.+.+.+|. .+.++++|++|++++|+ +++ ..+ ..+.+ +++|+.+++..+
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp-~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLK-DDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHH-HHHHHHHHSGGGGTCCEEECCSS
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccch-HHHHhhhccccCCCCCEEECCCC
Confidence 777877 888888888888888777776 78888888888888887 654 222 11222 244444444322
Q ss_pred eeeccCCC--CCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCC-ccEEEccCccc
Q 036984 190 LETESHYN--SLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQK-LATLDVSNNFF 266 (603)
Q Consensus 190 ~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~-L~~L~Ls~n~~ 266 (603)
... .... .+..+.+|+.|++++|.+.+.+| .+..+++|+.|++++|.+. .+|.+ +..+++ |++|++++|.+
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~---l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPAN---FCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTT---SEEECTTCCEEECCSSCC
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHh---hhhhcccCcEEEccCCcC
Confidence 211 1111 23344466666666666665555 5666666666666666665 45544 445555 66666666666
Q ss_pred cccCChhhhh-cCCCCcEEecCCCCcccccCCcCcccCCcccc-------CCCCCCEEeccCCcCcccCCccccCCCCCC
Q 036984 267 QGHIPVEIGT-YLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID-------RLPQISYLLLANNYIEGEIPAQLCQLKEVR 338 (603)
Q Consensus 267 ~~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 338 (603)
+ .+|..+.. .+++|+.|++++|.+. +..|..+. .+++|++|++++|.++...+..+..+++|+
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~--------~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIG--------SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTT--------TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred c-ccchhhhhcccCccCEEECcCCcCC--------CcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 5 55543322 1225666655555443 23344444 455677777777777644444455566777
Q ss_pred EEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCch
Q 036984 339 LIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPT 418 (603)
Q Consensus 339 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 418 (603)
.|++++|+++ .+|....... ...+..+++|+.|++++|.++ .+|.
T Consensus 461 ~L~Ls~N~l~-~i~~~~~~~~---------------------------------~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 461 SINLMGNMLT-EIPKNSLKDE---------------------------------NENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp EEECCSSCCS-BCCSSSSEET---------------------------------TEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred EEECCCCCCC-CcCHHHhccc---------------------------------cccccccCCccEEECcCCcCC-ccCh
Confidence 7777777665 4442211100 001233558999999999999 6777
Q ss_pred hcc--CcCcCCEEecccccccccCCcCCcCCCCCCEEeC------CCCcCcccCC-CccCCCCCCceecccCcccccCCC
Q 036984 419 QIG--YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDL------SYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPD 489 (603)
Q Consensus 419 ~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~ 489 (603)
.+. .+++|++|+|++|++++ +|..+.++++|++|++ ++|++.+.+| .+..+++|++|++++|++ +.+|.
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 776 89999999999999996 8888999999999999 5677888888 888999999999999999 68888
Q ss_pred cccccCCCCcccccCCcCCCCC
Q 036984 490 RVAQFSTFEEDSYEGNPFLYGQ 511 (603)
Q Consensus 490 ~~~~l~~l~~~~l~gn~~~c~~ 511 (603)
.+. +.++.+++++||+.|..
T Consensus 584 ~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 584 KIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCC--TTCCEEECCSCTTCEEE
T ss_pred hHh--CcCCEEECcCCCCcccc
Confidence 655 78999999999998843
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-41 Score=374.24 Aligned_cols=370 Identities=19% Similarity=0.193 Sum_probs=274.8
Q ss_pred CCCCCEEEccCCCCCc-----------------CCchhhc--CCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc
Q 036984 80 TTSLQELNVASNKLTR-----------------NFPLGLC--ELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140 (603)
Q Consensus 80 ~~~L~~L~Ls~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 140 (603)
+++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|+++++|++|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 7777777777777776 2666655 77777777777777777777777777777777777776
Q ss_pred -CCc-cCCccccc-------CCCCCcEEEccCceeeeecCc-cccCCCCCCceeeccceeeeccCCCCCCCcccccEEec
Q 036984 141 -LTE-SISSSPLM-------LLTSIEELILSNNHFQIPISL-EPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISL 210 (603)
Q Consensus 141 -i~~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 210 (603)
+++ .+|. .+. .+++|++|++++|.+. ..+. ..+.++++|+.+++..+... .++.+..+++|+.|++
T Consensus 527 ~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~L~L 602 (876)
T 4ecn_A 527 GISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKL 602 (876)
T ss_dssp TSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESEEEC
T ss_pred CcccccchH-HHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceEEEC
Confidence 665 4554 333 3347777777777776 3321 24666777777776633332 2225666779999999
Q ss_pred cCCCCCCCcChhhccCCC-CCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhh---hh-cCCCCcEEe
Q 036984 211 SGYRDDGTFPKFLYHQHD-LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEI---GT-YLPGLMHLN 285 (603)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~---~~-~l~~L~~L~ 285 (603)
++|.+. .+|..+..+++ |+.|++++|.+. .+|.++. ....++|+.|++++|.+.+.+|... .. .+++|+.|+
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 999998 78888999998 999999999998 6776532 1223459999999999986555321 11 245899999
Q ss_pred cCCCCcccccCCcCcccCCccc-cCCCCCCEEeccCCcCcccCCccccCC-------CCCCEEecCCCcCccCCChhhhc
Q 036984 286 LSRNAFNDLSYNRLQGSIPNWI-DRLPQISYLLLANNYIEGEIPAQLCQL-------KEVRLIDLSHNNLSGHIPFCLVN 357 (603)
Q Consensus 286 L~~n~l~~l~~~~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l-------~~L~~L~Ls~n~l~~~~~~~~~~ 357 (603)
+++|.+.. +|..+ ..+++|+.|++++|.++.+.+..+... ++|+.|+|++|+++ .+|..+..
T Consensus 680 Ls~N~L~~---------lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~ 749 (876)
T 4ecn_A 680 LSYNEIQK---------FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA 749 (876)
T ss_dssp CCSSCCCS---------CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST
T ss_pred ccCCcCCc---------cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh
Confidence 99888763 34443 468999999999999984433333322 38999999999997 55543320
Q ss_pred ccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccc----
Q 036984 358 TALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH---- 433 (603)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~---- 433 (603)
..+++|+.|+|++|.+++ +|..+..+++|+.|+|++
T Consensus 750 ---------------------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 750 ---------------------------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp ---------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred ---------------------------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 246799999999999996 788899999999999976
Q ss_pred --ccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984 434 --NNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 434 --N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c 509 (603)
|++.+.+|..|.++++|+.|++++|++ +.+| .+. ++|+.|++++|++....+..+..........+.+|++.+
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 788889999999999999999999999 4777 543 699999999999988777766666666677788887665
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.8e-41 Score=367.03 Aligned_cols=335 Identities=18% Similarity=0.211 Sum_probs=223.7
Q ss_pred Cchhhc--CCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc-CCc-cCCcccccCC------CCCcEEEccCcee
Q 036984 97 FPLGLC--ELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ-LTE-SISSSPLMLL------TSIEELILSNNHF 166 (603)
Q Consensus 97 ~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~~l------~~L~~L~l~~n~~ 166 (603)
+|..++ ++++|++|++++|.+.+.+|..|+++++|++|++++|. +++ .+|. .+..+ ++|++|++++|.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcC
Confidence 444444 55555555555555554555555555555555555554 443 3443 33332 4555555555554
Q ss_pred eeecCc-cccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCC-CCEEEcCCCcccCCCC
Q 036984 167 QIPISL-EPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHD-LKNADLSHLNLSGEFP 244 (603)
Q Consensus 167 ~~~~~~-~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~i~~~~~ 244 (603)
+ ..+. ..+.++++|+.+++..+...... +.+..+.+|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i-p~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEEC-CCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccch-hhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccc
Confidence 4 2111 13444444444444422211111 14445568888889888887 67778888888 999999999988 677
Q ss_pred CCCccccccCCccEEEccCccccccCChhhhh------cCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEec
Q 036984 245 NWLMPIHCLQKLATLDVSNNFFQGHIPVEIGT------YLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLL 318 (603)
Q Consensus 245 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~------~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L 318 (603)
.++. ...+++|+.|++++|.+.+.+|..+.. .+++|+.|++++|.+..+. +..+..+++|++|++
T Consensus 394 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp--------~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 394 NIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP--------KELFSTGSPLSSINL 464 (636)
T ss_dssp SCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC--------THHHHTTCCCSEEEC
T ss_pred hhhh-hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCC--------HHHHccCCCCCEEEC
Confidence 6522 122448999999999988766655440 2668899888888776332 233455889999999
Q ss_pred cCCcCcccCCccccCCC-------CCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCC
Q 036984 319 ANNYIEGEIPAQLCQLK-------EVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMG 391 (603)
Q Consensus 319 ~~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (603)
++|.++.+.+..+.... +|+.|++++|+++ .+|..+..
T Consensus 465 s~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------------------------- 509 (636)
T 4eco_A 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA---------------------------------- 509 (636)
T ss_dssp CSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST----------------------------------
T ss_pred CCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh----------------------------------
Confidence 99999844444444333 8999999999987 55543320
Q ss_pred cchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEec------ccccccccCCcCCcCCCCCCEEeCCCCcCcccCC
Q 036984 392 KEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL------SHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP 465 (603)
Q Consensus 392 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 465 (603)
..+++|+.|++++|++++ +|..+..+++|++|+| ++|++.+.+|..+.++++|++|++++|+++ .+|
T Consensus 510 -----~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip 582 (636)
T 4eco_A 510 -----TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVN 582 (636)
T ss_dssp -----TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCC
T ss_pred -----ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccC
Confidence 246789999999999996 7888889999999999 567788899999999999999999999995 677
Q ss_pred -CccCCCCCCceecccCcccccCCC
Q 036984 466 -QLIVLTTLAVFRVAYNNLSGKIPD 489 (603)
Q Consensus 466 -~~~~l~~L~~L~l~~N~l~~~~p~ 489 (603)
.+. ++|+.|++++|++.+..+.
T Consensus 583 ~~~~--~~L~~L~Ls~N~l~~~~~~ 605 (636)
T 4eco_A 583 EKIT--PNISVLDIKDNPNISIDLS 605 (636)
T ss_dssp SCCC--TTCCEEECCSCTTCEEECT
T ss_pred HhHh--CcCCEEECcCCCCccccHH
Confidence 443 8999999999988864443
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.4e-39 Score=338.34 Aligned_cols=367 Identities=19% Similarity=0.153 Sum_probs=244.5
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCC-CCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCc
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLR-DSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLR 108 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (603)
+++|++|+|++|.++.. .+..|.++++|++|++++|.+. .+++..|. +++|++|++++|.+.+..|..|.++++|+
T Consensus 29 ~~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAEL--NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp CTTCCEEECCSSCCCEE--CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CCccCEEEecCCccCcC--ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 45666666666666532 2345666666666666666654 44455555 66666666666666665566666666666
Q ss_pred EEeccCCCCccCcCcc--CCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeec
Q 036984 109 ELYIDNNDLSGSLPLC--LTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNG 186 (603)
Q Consensus 109 ~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~ 186 (603)
+|++++|.+++..+.. |+++++|++|++++|.+++..|...+..+++|++|++++|.+.
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~------------------- 167 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK------------------- 167 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS-------------------
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc-------------------
Confidence 6666666665433333 6666666666666666664444423566666666666666554
Q ss_pred cceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccC--CCCCEEEcCCCcccCCCCCCCc-----cccccCCccEE
Q 036984 187 EIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQ--HDLKNADLSHLNLSGEFPNWLM-----PIHCLQKLATL 259 (603)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~-----~~~~l~~L~~L 259 (603)
+..+..+..+ .+|+.|++++|.+.+..+.++. .+..+++|++|
T Consensus 168 ------------------------------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L 217 (455)
T 3v47_A 168 ------------------------------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217 (455)
T ss_dssp ------------------------------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEE
T ss_pred ------------------------------ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeE
Confidence 2333333332 3455666666655543333211 02245678888
Q ss_pred EccCccccccCChhhhhc--CCCCcEEecCCCCcccc--cCCcCcccCCccccC--CCCCCEEeccCCcCcccCCccccC
Q 036984 260 DVSNNFFQGHIPVEIGTY--LPGLMHLNLSRNAFNDL--SYNRLQGSIPNWIDR--LPQISYLLLANNYIEGEIPAQLCQ 333 (603)
Q Consensus 260 ~Ls~n~~~~~~~~~~~~~--l~~L~~L~L~~n~l~~l--~~~~~~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~ 333 (603)
++++|.+.+..|..+... .++|+.|++++|..... ..+.+.+..+..+.. .++|++|++++|.+.+..+..+..
T Consensus 218 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 297 (455)
T 3v47_A 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297 (455)
T ss_dssp ECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred ecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc
Confidence 888887776665554442 26778888877754321 222222222222222 368999999999999888888999
Q ss_pred CCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCc
Q 036984 334 LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLT 413 (603)
Q Consensus 334 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 413 (603)
+++|+.|++++|++++..|.. +..+++|+.|++++|.++
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~-----------------------------------------~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNA-----------------------------------------FWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTT-----------------------------------------TTTCTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCcccccChhH-----------------------------------------hcCcccCCEEECCCCccC
Confidence 999999999999987544433 334678999999999998
Q ss_pred ccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCC
Q 036984 414 GEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPD 489 (603)
Q Consensus 414 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~ 489 (603)
+..+..+..+++|++|+|++|++++..|..|.++++|++|++++|++++..+ .+..+++|++|++++|++++.+|.
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 7878888899999999999999998888889999999999999999986555 567889999999999999988774
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-39 Score=348.25 Aligned_cols=416 Identities=20% Similarity=0.247 Sum_probs=295.2
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE 109 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (603)
+...+++++++|.++. .|..+. ++|++|++++|.++++++..|. +++|++|++++|++++..|..|.++++|++
T Consensus 30 ~~~~~~l~ls~~~L~~---ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLTH---VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCCS---CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCcc---CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 5566899999999985 333332 8999999999999999988888 999999999999999988999999999999
Q ss_pred EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCC-cccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccc
Q 036984 110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESIS-SSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI 188 (603)
Q Consensus 110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~ 188 (603)
|++++|.++ .+|.. .+++|++|++++|.+++ ++ ...+.++++|++|++++|.+.. ..+..+.++ +|+.+++..
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~-l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L-~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDV-LPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL-HLSCILLDL 178 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSB-CCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS-CEEEEEEEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCccc-cCchHhhcccCcccEEecCCCcccc-Cchhhhhhc-eeeEEEeec
Confidence 999999998 45655 89999999999999985 33 2379999999999999999874 344445555 336666553
Q ss_pred eee--eccCCCCC--------------------------CCcccccEEeccCCCCCC----CcChhhccCC---------
Q 036984 189 YLE--TESHYNSL--------------------------TPKFQLTSISLSGYRDDG----TFPKFLYHQH--------- 227 (603)
Q Consensus 189 ~~~--~~~~~~~~--------------------------~~~~~L~~L~l~~~~~~~----~~~~~~~~l~--------- 227 (603)
+.. .......+ ....+|+.+++++|.... .....+..++
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 211 11111111 123355555555543100 0001112222
Q ss_pred ------------------CCCEEEcCCCcccCCCCCCCccc--cccCCccEEEccCccccccCChh-hhhc--CCCCcEE
Q 036984 228 ------------------DLKNADLSHLNLSGEFPNWLMPI--HCLQKLATLDVSNNFFQGHIPVE-IGTY--LPGLMHL 284 (603)
Q Consensus 228 ------------------~L~~L~L~~n~i~~~~~~~~~~~--~~l~~L~~L~Ls~n~~~~~~~~~-~~~~--l~~L~~L 284 (603)
+|+.|++++|.+.+.+|.++... ..++.|+.++++.+.+ .+|.. ++.. .++|+.|
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence 45555555555555555442111 2333344444444433 23321 1110 2457777
Q ss_pred ecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccc
Q 036984 285 NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGY 364 (603)
Q Consensus 285 ~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 364 (603)
++++|.+.... ..+.+++|++|++++|.+++..|..+..+++|+.|++++|++++..+
T Consensus 337 ~l~~n~~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------ 394 (562)
T 3a79_B 337 SISDTPFIHMV----------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK------------ 394 (562)
T ss_dssp EEESSCCCCCC----------CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH------------
T ss_pred EccCCCccccc----------CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc------------
Confidence 77776654321 11467899999999999998888899999999999999999874110
Q ss_pred cCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCc-hhccCcCcCCEEecccccccccCCcC
Q 036984 365 YDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIP-TQIGYLTRIRALNLSHNNLTGTIPIT 443 (603)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 443 (603)
....+..+++|+.|++++|.+++.+| ..+..+++|++|++++|++++..|..
T Consensus 395 ---------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 395 ---------------------------VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp ---------------------------HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred ---------------------------chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence 11234557899999999999997454 45888999999999999999877776
Q ss_pred CcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCc-ccccCCCCcccccCCcCCCCCC
Q 036984 444 FSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDR-VAQFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 444 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~l~~~~l~gn~~~c~~~ 512 (603)
+. ++|+.|++++|+++ .+| .+..+++|++|++++|+++ .+|.. +..++.++.+++++|||.|.|+
T Consensus 448 l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 448 LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 54 78999999999999 555 6779999999999999999 56655 8889999999999999999543
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.2e-40 Score=363.41 Aligned_cols=422 Identities=17% Similarity=0.172 Sum_probs=307.2
Q ss_pred CCCcEEEccCCcCCCCCCCccccCCCCCCCEEEc-cCCcCCCCccCc---------------------------------
Q 036984 32 ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYI-RDNDLRDSLLGA--------------------------------- 77 (603)
Q Consensus 32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~--------------------------------- 77 (603)
..++.|+|+++.+.+. .+..++++++|++|+| ++|.+.+..+-.
T Consensus 323 ~~V~~L~Ls~~~L~G~--ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGR--VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTTCCEEE--ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccCCCCCc--CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 5799999999999864 4578999999999999 788654331100
Q ss_pred -----------------c--cCCCCCEEEcc--CCCCCcCCchhhcCCCCCcEEeccCCCCcc-----------------
Q 036984 78 -----------------W--QTTSLQELNVA--SNKLTRNFPLGLCELVLLRELYIDNNDLSG----------------- 119 (603)
Q Consensus 78 -----------------~--~~~~L~~L~Ls--~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~----------------- 119 (603)
. ....++.+.+. +|.+++ +|..|+++++|++|+|++|.+++
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 0 01223333443 378888 78899999999999999999997
Q ss_pred CcCccCC--CCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCce-eee-ecC--cc----ccCCCCCCceeeccce
Q 036984 120 SLPLCLT--NLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNH-FQI-PIS--LE----PLSNLSKLKAFNGEIY 189 (603)
Q Consensus 120 ~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~--~~----~l~~L~~L~~l~~~~~ 189 (603)
.+|..++ ++++|++|+|++|.+.+.+|. .+..+++|++|++++|+ +++ ..+ +. .+..+++|+.+++..+
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 3888888 999999999999999888887 89999999999999998 765 222 11 3344556666666633
Q ss_pred eeeccCCC--CCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCC-ccEEEccCccc
Q 036984 190 LETESHYN--SLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQK-LATLDVSNNFF 266 (603)
Q Consensus 190 ~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~-L~~L~Ls~n~~ 266 (603)
... .... .+..+.+|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|.+ +..+++ |+.|++++|.+
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~---l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPED---FCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTT---SCEECTTCCEEECCSSCC
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHH---HhhccccCCEEECcCCCC
Confidence 332 2222 3555667777777777776 555 6777777777777777777 66655 556666 77777777777
Q ss_pred cccCChhhhhcC--CCCcEEecCCCCcccccCCcCcccCCcccc--CCCCCCEEeccCCcCcccCCccccCCCCCCEEec
Q 036984 267 QGHIPVEIGTYL--PGLMHLNLSRNAFNDLSYNRLQGSIPNWID--RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDL 342 (603)
Q Consensus 267 ~~~~~~~~~~~l--~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 342 (603)
. .+|..+.. + ++|+.|++++|.+.... ..++..+. .+++|+.|++++|.++...+..+..+++|+.|++
T Consensus 632 ~-~lp~~~~~-~~~~~L~~L~Ls~N~l~g~i-----p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 632 K-YIPNIFNA-KSVYVMGSVDFSYNKIGSEG-----RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704 (876)
T ss_dssp C-SCCSCCCT-TCSSCEEEEECCSSCTTTTS-----SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred C-cCchhhhc-cccCCCCEEECcCCcCCCcc-----ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence 6 66654332 3 23777777777654311 01112222 2347888888888887443344457788888888
Q ss_pred CCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhcc-
Q 036984 343 SHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIG- 421 (603)
Q Consensus 343 s~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~- 421 (603)
++|+++ .+|..+.... ...+..+++|+.|+|++|+++ .+|..+.
T Consensus 705 s~N~L~-~ip~~~~~~~---------------------------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~ 749 (876)
T 4ecn_A 705 SNNLMT-SIPENSLKPK---------------------------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRA 749 (876)
T ss_dssp CSCCCS-CCCTTSSSCT---------------------------------TSCCTTGGGCCEEECCSSCCC-CCCGGGST
T ss_pred CCCcCC-ccChHHhccc---------------------------------cccccccCCccEEECCCCCCc-cchHHhhh
Confidence 888776 4443222100 011234569999999999999 7788887
Q ss_pred -CcCcCCEEecccccccccCCcCCcCCCCCCEEeCCC------CcCcccCC-CccCCCCCCceecccCcccccCCCcccc
Q 036984 422 -YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY------NLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQ 493 (603)
Q Consensus 422 -~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 493 (603)
.+++|+.|+|++|++++ +|..+.++++|+.|++++ |.+.+.+| .+..+++|+.|++++|++ +.+|..+.
T Consensus 750 ~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~- 826 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT- 826 (876)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-
Confidence 89999999999999996 788899999999999977 77888888 888999999999999999 68898754
Q ss_pred cCCCCcccccCCcCCCC
Q 036984 494 FSTFEEDSYEGNPFLYG 510 (603)
Q Consensus 494 l~~l~~~~l~gn~~~c~ 510 (603)
+.++.+++++|++...
T Consensus 827 -~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 827 -PQLYILDIADNPNISI 842 (876)
T ss_dssp -SSSCEEECCSCTTCEE
T ss_pred -CCCCEEECCCCCCCcc
Confidence 6899999999998663
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=353.79 Aligned_cols=403 Identities=16% Similarity=0.154 Sum_probs=282.5
Q ss_pred cEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEecc
Q 036984 35 RLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYID 113 (603)
Q Consensus 35 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (603)
++||+++|.++. .+..+. ++|++|++++|.++++++..|. +++|++|++++|++++..|..|.++++|++|+++
T Consensus 3 ~~l~ls~n~l~~---ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIH---VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSS---CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccc---cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 589999999985 334444 8999999999999999988887 9999999999999999889999999999999999
Q ss_pred CCCCccCcCccCCCCCCCCEEEcccCcCCc-cCCcccccCCCCCcEEEccCceeeeecCccccCCCCCC--ceeecccee
Q 036984 114 NNDLSGSLPLCLTNLTSLQVLDVSYNQLTE-SISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKL--KAFNGEIYL 190 (603)
Q Consensus 114 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L--~~l~~~~~~ 190 (603)
+|+++. +|.. .+++|++|++++|.+++ .+|. .+..+++|++|++++|.+.. . .+..+++| +.+++..+.
T Consensus 78 ~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 78 HNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK-S---SVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp SSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG-G---GGGGGTTSCEEEEEEEECT
T ss_pred CCceee-cCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch-h---hccccccceeeEEEeeccc
Confidence 999994 5555 89999999999999986 3455 89999999999999999874 2 34444555 666555322
Q ss_pred e--eccCCCCCCCcc-cccEEeccCCCCCCCcC-hhhccCCCCCEEEcCCCc-------ccCCCCCCCccccccC-----
Q 036984 191 E--TESHYNSLTPKF-QLTSISLSGYRDDGTFP-KFLYHQHDLKNADLSHLN-------LSGEFPNWLMPIHCLQ----- 254 (603)
Q Consensus 191 ~--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~~~~l~----- 254 (603)
. .......+..+. ....+++++|.+.+..+ ..+..+++|+.+++++|. +.+.++. +..++
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~----l~~l~~L~~L 225 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK----LQTNPKLSNL 225 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHG----GGGCTTCCEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhh----hccccchhhc
Confidence 1 111111222111 22344555555443322 233445555555555543 2222221 33334
Q ss_pred ----------------------CccEEEccCccccccCChhhh----hcCCCCcEEecCCCCcccccCCcCcccCCcccc
Q 036984 255 ----------------------KLATLDVSNNFFQGHIPVEIG----TYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID 308 (603)
Q Consensus 255 ----------------------~L~~L~Ls~n~~~~~~~~~~~----~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~ 308 (603)
+|++|++++|.+.+.+|..++ ..+++|+.+++++|.+ .++. .++.
T Consensus 226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~--------~~~~ 296 (520)
T 2z7x_B 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQ--------SYIY 296 (520)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCT--------HHHH
T ss_pred cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecch--------hhhh
Confidence 555555555555555554442 2244555555544443 1110 1222
Q ss_pred CC---CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEec
Q 036984 309 RL---PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSP 385 (603)
Q Consensus 309 ~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (603)
.+ .+|+.|++++|.+.... .+..+++|++|++++|++++.+|..
T Consensus 297 ~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~------------------------------- 343 (520)
T 2z7x_B 297 EIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFEN------------------------------- 343 (520)
T ss_dssp HHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT-------------------------------
T ss_pred cccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhh-------------------------------
Confidence 11 45677777776665332 1256677777777777776544432
Q ss_pred CCCCCCcchhhhhcccceEEECcCCCCcc--cCchhccCcCcCCEEecccccccccCCc-CCcCCCCCCEEeCCCCcCcc
Q 036984 386 NGSPMGKEETVQILTSMSGIDLSCNKLTG--EIPTQIGYLTRIRALNLSHNNLTGTIPI-TFSNLKQIESLDLSYNLLHG 462 (603)
Q Consensus 386 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~ 462 (603)
+..+++|++|++++|++++ ..|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++
T Consensus 344 ----------~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 344 ----------CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp ----------CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred ----------hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 3447899999999999996 4567799999999999999999974554 58889999999999999987
Q ss_pred cCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984 463 KIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 463 ~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c 509 (603)
..| .+. ++|+.|++++|+++ .+|..+..++.++.+++++|.+..
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc
Confidence 777 432 79999999999999 788888899999999999998764
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-38 Score=342.39 Aligned_cols=447 Identities=17% Similarity=0.184 Sum_probs=325.4
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE 109 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (603)
|+.....|.+++.++. .|..+ .++|++|++++|.++++++..|. +++|++|++++|++.+..|..|.++++|++
T Consensus 4 C~~~~~c~~~~~~l~~---ip~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 4 CDASGVCDGRSRSFTS---IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp ECTTSEEECTTSCCSS---CCSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCceEECCCCcccc---ccccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence 4555667888888875 33333 37999999999999999888888 999999999999999988899999999999
Q ss_pred EeccCCCCccCcCccCCCCCCCCEEEcccCcCCcc-CCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccc
Q 036984 110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTES-ISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI 188 (603)
Q Consensus 110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~ 188 (603)
|++++|.+++..+.+|+++++|++|++++|.+++. .+. .+..+++|++|++++|.+....+...+.++++|+.+++..
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 99999999988777899999999999999999852 344 7899999999999999855455556788888888888874
Q ss_pred eeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccc
Q 036984 189 YLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQG 268 (603)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~ 268 (603)
+.........+....+|+.|+++.+.........+..+++|+.|++++|.+.+...........+++|+.|++++|.+.+
T Consensus 158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred CcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 44333344556667799999999998764433444678999999999999986421111113456788888888888765
Q ss_pred cCChhh---hhcCCCCcEEecCCCCcccccCC----------------------cCc-----ccCCccccCCCCCCEEec
Q 036984 269 HIPVEI---GTYLPGLMHLNLSRNAFNDLSYN----------------------RLQ-----GSIPNWIDRLPQISYLLL 318 (603)
Q Consensus 269 ~~~~~~---~~~l~~L~~L~L~~n~l~~l~~~----------------------~~~-----~~~~~~l~~l~~L~~L~L 318 (603)
..+..+ ...+++|+.+++++|.+..+..- .+. ..++..+...++|++|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 433322 23356777777777765433210 000 011111223467888888
Q ss_pred cCCcCcccCCccc-cCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcc----
Q 036984 319 ANNYIEGEIPAQL-CQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKE---- 393 (603)
Q Consensus 319 ~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 393 (603)
++|.+. .+|..+ ..+++|++|++++|++++.+|..... ....+.+..+...+......
T Consensus 318 ~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------~~~l~~L~~L~Ls~N~l~~~~~~~ 380 (549)
T 2z81_A 318 ENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC----------------KGAWPSLQTLVLSQNHLRSMQKTG 380 (549)
T ss_dssp ESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC----------------TTSSTTCCEEECTTSCCCCHHHHH
T ss_pred ccCccc-cCCHHHHhcCccccEEEccCCccccccccchhh----------------hhccccCcEEEccCCcccccccch
Confidence 888887 445444 56888888888888887655432110 00112333333333322221
Q ss_pred hhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCC
Q 036984 394 ETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTL 473 (603)
Q Consensus 394 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L 473 (603)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+. ++|++||+++|++++.+ ..+++|
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~---~~l~~L 453 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS---LFLPRL 453 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC---CCCTTC
T ss_pred hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc---ccCChh
Confidence 34677889999999999998 67778888899999999999988 4444432 68999999999998653 468899
Q ss_pred CceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984 474 AVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 474 ~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c 509 (603)
++|++++|+++ .+|. ...++.++.+++++|....
T Consensus 454 ~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 454 QELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp CEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred cEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence 99999999998 6776 4678899999999997654
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.3e-39 Score=336.28 Aligned_cols=355 Identities=21% Similarity=0.204 Sum_probs=251.8
Q ss_pred CCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCc-CCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEE
Q 036984 58 VHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTR-NFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLD 135 (603)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 135 (603)
++|++|++++|.++++.+..|. +++|++|++++|.+.+ +.+..|.++++|++|++++|.+++..|.+|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 4555555555555555555444 5555555555555542 2234455555555555555555544455555555555555
Q ss_pred cccCcCCccCCc-ccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCC
Q 036984 136 VSYNQLTESISS-SPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYR 214 (603)
Q Consensus 136 L~~n~i~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 214 (603)
+++|.+++..+. ..+..+++|++|++++ |.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~-------------------------------------------------n~ 140 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRD-------------------------------------------------NN 140 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCS-------------------------------------------------SB
T ss_pred CCCCCCCccccCcccccCcccCCEEECCC-------------------------------------------------Cc
Confidence 555555432221 1244444444444444 44
Q ss_pred CCCCcChh-hccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhh--------hcCCCCcEEe
Q 036984 215 DDGTFPKF-LYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIG--------TYLPGLMHLN 285 (603)
Q Consensus 215 ~~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~--------~~l~~L~~L~ 285 (603)
+.+..|.. +..+++|+.|++++|.+.+..+..+..+. ..+|+.|++++|.+. .++.... ..+++|+.|+
T Consensus 141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~L~ 218 (455)
T 3v47_A 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ-GKHFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLD 218 (455)
T ss_dssp CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT-TCEEEEEECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEEEE
T ss_pred cCccCcccccCCCCcccEEeCCCCcccccChhhhhccc-cccccccccccCccc-ccchhhccccccccccccceeeeEe
Confidence 44444544 78889999999999999988887643221 268999999999998 4443221 1257899999
Q ss_pred cCCCCcccccCCcCcccCCccccC---CCCCCEEeccCCcCcccC----------Ccccc--CCCCCCEEecCCCcCccC
Q 036984 286 LSRNAFNDLSYNRLQGSIPNWIDR---LPQISYLLLANNYIEGEI----------PAQLC--QLKEVRLIDLSHNNLSGH 350 (603)
Q Consensus 286 L~~n~l~~l~~~~~~~~~~~~l~~---l~~L~~L~L~~n~l~~~~----------~~~~~--~l~~L~~L~Ls~n~l~~~ 350 (603)
+++|.+.. ..|..+.. .++|+.|++++|...+.. +..+. ..++|+.|++++|.+++.
T Consensus 219 Ls~n~l~~--------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 219 LSGNGFKE--------SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp CTTSCCCH--------HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cCCCcccc--------cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence 88887653 23333322 378999999988654321 11222 236899999999999865
Q ss_pred CChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEe
Q 036984 351 IPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALN 430 (603)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 430 (603)
.|.. +..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus 291 ~~~~-----------------------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 291 LKSV-----------------------------------------FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp CTTT-----------------------------------------TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred chhh-----------------------------------------cccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 5533 34477999999999999988899999999999999
Q ss_pred cccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984 431 LSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 431 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c 509 (603)
|++|.+++..|..|.++++|++|++++|++++..| .+..+++|++|++++|++++..+..+..++.++.+++++||+.|
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 99999998889999999999999999999998877 88999999999999999998777777899999999999999999
Q ss_pred CCC
Q 036984 510 GQP 512 (603)
Q Consensus 510 ~~~ 512 (603)
.+|
T Consensus 410 ~~~ 412 (455)
T 3v47_A 410 SCP 412 (455)
T ss_dssp CTT
T ss_pred CCC
Confidence 665
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-37 Score=334.63 Aligned_cols=413 Identities=19% Similarity=0.209 Sum_probs=312.6
Q ss_pred CCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCC
Q 036984 4 FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTS 82 (603)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~ 82 (603)
+...++++++++.+.. +|...+++|++|++++|.++.. .+..|.++++|++|++++|.++++++..|. +++
T Consensus 30 ~~~~~~l~ls~~~L~~------ip~~~~~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 30 NELESMVDYSNRNLTH------VPKDLPPRTKALSLSQNSISEL--RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp ---CCEEECTTSCCCS------CCTTSCTTCCEEECCSSCCCCC--CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cCCCcEEEcCCCCCcc------CCCCCCCCcCEEECCCCCcccc--ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 3445789999976653 3444568999999999999863 446899999999999999999999999888 999
Q ss_pred CCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccC-cCccCCCCCCCCEEEcccCcCCccCCcccccCCCCC--cEE
Q 036984 83 LQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGS-LPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSI--EEL 159 (603)
Q Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L--~~L 159 (603)
|++|++++|+++. +|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+.+. .+..+++| ++|
T Consensus 102 L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L 174 (562)
T 3a79_B 102 LEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCI 174 (562)
T ss_dssp CCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEE
T ss_pred CCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEE
Confidence 9999999999997 5554 899999999999999864 468899999999999999999752 35566666 999
Q ss_pred EccCcee--eeecCcccc--------------------------CCCCCCceeecccee---------------------
Q 036984 160 ILSNNHF--QIPISLEPL--------------------------SNLSKLKAFNGEIYL--------------------- 190 (603)
Q Consensus 160 ~l~~n~~--~~~~~~~~l--------------------------~~L~~L~~l~~~~~~--------------------- 190 (603)
++++|.+ ....+ ..+ .++++|+.++...+.
T Consensus 175 ~L~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 175 LLDLVSYHIKGGET-ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEESSCCCCSSSC-CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EeecccccccccCc-ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 9999987 32111 111 123333333332110
Q ss_pred -------eeccC---CCCCCCcccccEEeccCCCCCCCcChhh-----ccCCCCCEEEcCCCcccCCCC-CCCccccccC
Q 036984 191 -------ETESH---YNSLTPKFQLTSISLSGYRDDGTFPKFL-----YHQHDLKNADLSHLNLSGEFP-NWLMPIHCLQ 254 (603)
Q Consensus 191 -------~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~-~~~~~~~~l~ 254 (603)
..... ........+|++|++++|.+.+.+|..+ ..++.|+.++++.+.+ .+| .++..+....
T Consensus 254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTC
T ss_pred EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccC
Confidence 00000 0000112389999999999988888777 6666666677776665 344 2211111235
Q ss_pred CccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccC--Ccccc
Q 036984 255 KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEI--PAQLC 332 (603)
Q Consensus 255 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~ 332 (603)
+|+.|++++|.+. .++ ....+++|++|++++|.+.+ ..|..++.+++|++|++++|++++.. |..+.
T Consensus 332 ~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 400 (562)
T 3a79_B 332 NIKMLSISDTPFI-HMV--CPPSPSSFTFLNFTQNVFTD--------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400 (562)
T ss_dssp CCSEEEEESSCCC-CCC--CCSSCCCCCEEECCSSCCCT--------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT
T ss_pred cceEEEccCCCcc-ccc--CccCCCCceEEECCCCcccc--------chhhhhcccCCCCEEECCCCCcCCcccchhhhc
Confidence 7999999999986 333 22458899999998887653 45777888999999999999999743 46789
Q ss_pred CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCC
Q 036984 333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL 412 (603)
Q Consensus 333 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 412 (603)
.+++|++|++++|++++.+|. ..+..+++|+.|++++|.+
T Consensus 401 ~l~~L~~L~l~~N~l~~~~~~----------------------------------------~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 401 NMSSLETLDVSLNSLNSHAYD----------------------------------------RTCAWAESILVLNLSSNML 440 (562)
T ss_dssp TCTTCCEEECTTSCCBSCCSS----------------------------------------CCCCCCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCCcCCCccCh----------------------------------------hhhcCcccCCEEECCCCCC
Confidence 999999999999999864542 1234478999999999999
Q ss_pred cccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCC-ccCCCCCCceecccCcccccCC
Q 036984 413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQ-LIVLTTLAVFRVAYNNLSGKIP 488 (603)
Q Consensus 413 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~l~~N~l~~~~p 488 (603)
++..|..+. ++|++|+|++|+++ .+|..+.++++|++|++++|++++..+. +..+++|+.|++++|++.+..|
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 877766554 79999999999999 6777777999999999999999954444 8899999999999999998766
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-37 Score=337.39 Aligned_cols=426 Identities=22% Similarity=0.237 Sum_probs=289.1
Q ss_pred CCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCC
Q 036984 5 KNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSL 83 (603)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L 83 (603)
+++++|+|++|.+..-.. .....+++|++|+|++|+|+. +.+.+|.++++|++|+|++|+++.+++.+|. +++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~---~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCH---HHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 378999999998853321 112338999999999999985 3456799999999999999999999999998 9999
Q ss_pred CEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccC-cCccCCCCCCCCEEEcccCcCCccCCcccccCCCCC----cE
Q 036984 84 QELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGS-LPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSI----EE 158 (603)
Q Consensus 84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L----~~ 158 (603)
++|++++|+++++.+..|+++++|++|++++|.+++. .|..++++++|++|++++|.+++..+. .+..+.++ ..
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLS 205 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTCTTCCCE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc-cccchhhhhhhhhh
Confidence 9999999999998778899999999999999999754 577889999999999999999753332 44433222 23
Q ss_pred EEccCceeeeec--------------------------------------------------------------------
Q 036984 159 LILSNNHFQIPI-------------------------------------------------------------------- 170 (603)
Q Consensus 159 L~l~~n~~~~~~-------------------------------------------------------------------- 170 (603)
++++.|.+....
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence 444433321100
Q ss_pred ------------CccccCCCCCCceeecc-ceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCC
Q 036984 171 ------------SLEPLSNLSKLKAFNGE-IYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHL 237 (603)
Q Consensus 171 ------------~~~~l~~L~~L~~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n 237 (603)
....+..+..+..+... ..... ...+.....++.|++.++.+....+ ..+..|+.+++..|
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n 359 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSN 359 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE---CGGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESC
T ss_pred hhhhhhcccccchhhhhhhhccccccccccccccc---ccccccchhhhhhhcccccccCcCc---ccchhhhhcccccc
Confidence 00001111122223222 11111 1123334478888888887654433 23456777777777
Q ss_pred cccCCCCCCCccccccCCccEEEccCccccc--cCChhhhhcCCCCcEEecCCCCccccc---------------CCcCc
Q 036984 238 NLSGEFPNWLMPIHCLQKLATLDVSNNFFQG--HIPVEIGTYLPGLMHLNLSRNAFNDLS---------------YNRLQ 300 (603)
Q Consensus 238 ~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~l~---------------~~~~~ 300 (603)
.+....+ ...+++|+.+++++|.+.. ..+...+. +.+|+.+++..+....+. .+...
T Consensus 360 ~~~~~~~-----~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 360 KGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 433 (635)
T ss_dssp CSCCBCC-----CCBCTTCCEEECCSSCCBEEEECCHHHHS-CSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred cCCCCcc-----cccccccccchhhccccccccccccchhh-hhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence 6543322 2356777777777776642 23333333 566777776666543221 11100
Q ss_pred c-cCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCC
Q 036984 301 G-SIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPA 379 (603)
Q Consensus 301 ~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (603)
. ..+..+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+...
T Consensus 434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~----------------------------- 484 (635)
T 4g8a_A 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN----------------------------- 484 (635)
T ss_dssp STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-----------------------------
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc-----------------------------
Confidence 0 1112333445555555555555555555555555555555555543211
Q ss_pred eeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCc
Q 036984 380 LSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNL 459 (603)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 459 (603)
.....+..+++|+.|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|+.||+++|+
T Consensus 485 -----------~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 485 -----------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp -----------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred -----------cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 112345568899999999999999999999999999999999999999889999999999999999999
Q ss_pred CcccCC-CccCC-CCCCceecccCcccccCC
Q 036984 460 LHGKIP-QLIVL-TTLAVFRVAYNNLSGKIP 488 (603)
Q Consensus 460 l~~~~~-~~~~l-~~L~~L~l~~N~l~~~~p 488 (603)
+++.+| .+..+ ++|+.|++++|++.+...
T Consensus 554 l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 554 IMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 998888 67776 689999999999998654
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=318.64 Aligned_cols=346 Identities=19% Similarity=0.193 Sum_probs=220.3
Q ss_pred CEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc
Q 036984 61 QELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140 (603)
Q Consensus 61 ~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 140 (603)
+.++.+++.++.++... .+++++|++++|.+++..+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 45666666666665543 3566777777777776666667777777777777777766666677777777777777777
Q ss_pred CCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcC
Q 036984 141 LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFP 220 (603)
Q Consensus 141 i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 220 (603)
++ .++...|..+++|++|++++|.+.... +
T Consensus 92 l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~-------------------------------------------------~ 121 (477)
T 2id5_A 92 LK-LIPLGVFTGLSNLTKLDISENKIVILL-------------------------------------------------D 121 (477)
T ss_dssp CC-SCCTTSSTTCTTCCEEECTTSCCCEEC-------------------------------------------------T
T ss_pred CC-ccCcccccCCCCCCEEECCCCccccCC-------------------------------------------------h
Confidence 66 345445666677777777666554211 2
Q ss_pred hhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCc
Q 036984 221 KFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQ 300 (603)
Q Consensus 221 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 300 (603)
..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+. .++...+..+++|+.|++++|.+..+.
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~----- 192 (477)
T 2id5_A 122 YMFQDLYNLKSLEVGDNDLVYISHRA---FSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIR----- 192 (477)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTS---STTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEEC-----
T ss_pred hHccccccCCEEECCCCccceeChhh---ccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeC-----
Confidence 23344455555556555555444443 455667777777777776 556555555777777777666654432
Q ss_pred ccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCe
Q 036984 301 GSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPAL 380 (603)
Q Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (603)
+..+..+++|++|++++|...+.++.......+|+.|++++|+++. +|
T Consensus 193 ---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~---------------------------- 240 (477)
T 2id5_A 193 ---DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VP---------------------------- 240 (477)
T ss_dssp ---TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CC----------------------------
T ss_pred ---hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cC----------------------------
Confidence 3345556777777777776665555555555677777777777752 11
Q ss_pred eEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcC
Q 036984 381 SYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLL 460 (603)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 460 (603)
...+..+++|+.|+|++|.+++..+..+..+++|++|+|++|++++..|..|.++++|+.|++++|++
T Consensus 241 ------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 241 ------------YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp ------------HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred ------------HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence 12334466777777777777766666777777777777777777777777777777777777777777
Q ss_pred cccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984 461 HGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 461 ~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~ 512 (603)
++..+ .+..+++|+.|++++|++.+..+.. .-+.......+.++...|..|
T Consensus 309 ~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 309 TTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp SCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred ceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCc
Confidence 75444 5667777777777777777654321 111223344556666666544
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.9e-35 Score=308.68 Aligned_cols=344 Identities=24% Similarity=0.327 Sum_probs=244.5
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE 109 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (603)
+++++.|+++++.+... ..+..+++|++|++++|.++++++ +. +++|++|++++|.+.+..+ +.++++|++
T Consensus 45 l~~l~~L~l~~~~i~~l----~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI----DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hccccEEecCCCCCccC----cchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 56777777777776642 236677777777777777777665 44 7777777777777776433 777777777
Q ss_pred EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984 110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY 189 (603)
Q Consensus 110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~ 189 (603)
|++++|.+++..+ +.++++|++|++++|.+.+ ++ .+..+++|++|++++ .+...
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~-~~~~~-------------------- 170 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGN-QVTDL-------------------- 170 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEE-SCCCC--------------------
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCC-cccCc--------------------
Confidence 7777777775432 7777777777777777763 33 366777777777742 22110
Q ss_pred eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccccc
Q 036984 190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGH 269 (603)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 269 (603)
..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+. .
T Consensus 171 -------~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~-~ 235 (466)
T 1o6v_A 171 -------KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLK-D 235 (466)
T ss_dssp -------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCC-C
T ss_pred -------hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-----ccccCCCCEEECCCCCcc-c
Confidence 1123334777888888877653 347788888888888888775443 456788888888888887 4
Q ss_pred CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984 270 IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG 349 (603)
Q Consensus 270 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 349 (603)
++ .+..+++|+.|++++|.+..+. .+..+++|++|++++|.+++..+ +..+++|+.|++++|++++
T Consensus 236 ~~--~l~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 236 IG--TLASLTNLTDLDLANNQISNLA----------PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301 (466)
T ss_dssp CG--GGGGCTTCSEEECCSSCCCCCG----------GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC
T ss_pred ch--hhhcCCCCCEEECCCCccccch----------hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC
Confidence 43 2344788888888887765432 15667888888888888876544 7788888888888888763
Q ss_pred CCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEE
Q 036984 350 HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL 429 (603)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 429 (603)
..+ +..+++|+.|++++|.+++..| +..+++|++|
T Consensus 302 ~~~-------------------------------------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 302 ISP-------------------------------------------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp CGG-------------------------------------------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred chh-------------------------------------------hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 211 3456788888888888886655 6778888888
Q ss_pred ecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccc
Q 036984 430 NLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSG 485 (603)
Q Consensus 430 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~ 485 (603)
++++|++++. ..+.++++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 8888888854 457788888888888888887666 7778888888888888885
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.6e-35 Score=307.98 Aligned_cols=346 Identities=27% Similarity=0.343 Sum_probs=287.8
Q ss_pred CCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCE
Q 036984 55 CQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQV 133 (603)
Q Consensus 55 ~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 133 (603)
..+++++.|+++++.+..++. +. +++|++|++++|.+.+..+ +.++++|++|++++|.+++..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 357889999999999988753 44 9999999999999998544 9999999999999999986654 999999999
Q ss_pred EEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCC
Q 036984 134 LDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGY 213 (603)
Q Consensus 134 L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 213 (603)
|++++|.+++ ++. +..+++|++|++++|.+.... .+..++ +|+.|+++ +
T Consensus 117 L~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~------------------------~L~~L~l~-~ 165 (466)
T 1o6v_A 117 LTLFNNQITD-IDP--LKNLTNLNRLELSSNTISDIS---ALSGLT------------------------SLQQLSFG-N 165 (466)
T ss_dssp EECCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCCG---GGTTCT------------------------TCSEEEEE-E
T ss_pred EECCCCCCCC-ChH--HcCCCCCCEEECCCCccCCCh---hhccCC------------------------cccEeecC-C
Confidence 9999999985 443 889999999999999876422 233333 55566664 2
Q ss_pred CCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCccc
Q 036984 214 RDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFND 293 (603)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 293 (603)
.+... ..+..+++|+.|++++|.+.+. +. +..+++|++|++++|.+.+..| +..+++|+.|++++|.+.+
T Consensus 166 ~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~~----l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~ 235 (466)
T 1o6v_A 166 QVTDL--KPLANLTTLERLDISSNKVSDI-SV----LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD 235 (466)
T ss_dssp SCCCC--GGGTTCTTCCEEECCSSCCCCC-GG----GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC
T ss_pred cccCc--hhhccCCCCCEEECcCCcCCCC-hh----hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCccc
Confidence 33332 2388999999999999998743 22 6789999999999999985433 3448999999999998765
Q ss_pred ccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCc
Q 036984 294 LSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWD 373 (603)
Q Consensus 294 l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (603)
+ ..+..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+
T Consensus 236 ~----------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------------------- 282 (466)
T 1o6v_A 236 I----------GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--------------------- 282 (466)
T ss_dssp C----------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG---------------------
T ss_pred c----------hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc---------------------
Confidence 4 246678999999999999987654 8899999999999999974211
Q ss_pred CCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEE
Q 036984 374 HASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESL 453 (603)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 453 (603)
+..+++|+.|++++|.+++..+ +..+++|++|++++|++++..| +..+++|++|
T Consensus 283 ----------------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 283 ----------------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp ----------------------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred ----------------------ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 3457899999999999996554 8899999999999999997765 7889999999
Q ss_pred eCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984 454 DLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 454 ~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c 509 (603)
++++|++++ ++.+..+++|+.|++++|++++..| +..++.++.+++++|++..
T Consensus 337 ~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSD-VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCC-CGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCC-chhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 999999995 4788899999999999999998887 7899999999999999877
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=311.81 Aligned_cols=349 Identities=20% Similarity=0.179 Sum_probs=222.0
Q ss_pred cEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEecc
Q 036984 35 RLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYID 113 (603)
Q Consensus 35 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (603)
+.++.+++.++. .+..+ .+++++|++++|.++.+++..|. +++|++|++++|.+.+..|..|.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~~---ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFVA---VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCSS---CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc---CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 466777766653 22222 35778888888888887777777 8888888888888887777788888888888888
Q ss_pred CCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeec
Q 036984 114 NNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETE 193 (603)
Q Consensus 114 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~ 193 (603)
+|.++...+..|.++++|++|++++|.+.+..+. .+..+++|++|++++|.+....+ ..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~------------------- 147 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISH-RA------------------- 147 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECT-TS-------------------
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeCh-hh-------------------
Confidence 8888766666778888888888888888754444 67778888888888876653221 11
Q ss_pred cCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChh
Q 036984 194 SHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVE 273 (603)
Q Consensus 194 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 273 (603)
+..+.+|+.|++++|.++...+..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|...+.+|..
T Consensus 148 -----~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 148 -----FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS---FKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp -----STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC---SCSCTTCCEEEEECCTTCCEECTT
T ss_pred -----ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh---cccCcccceeeCCCCccccccCcc
Confidence 111224444444444444444444555555555555555554433332 334445555555544433333332
Q ss_pred hhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCCh
Q 036984 274 IGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPF 353 (603)
Q Consensus 274 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 353 (603)
. ....+|++|++++|.++...+..+..+++|+.|++++|++++..+
T Consensus 220 ~---------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~- 265 (477)
T 2id5_A 220 C---------------------------------LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG- 265 (477)
T ss_dssp T---------------------------------TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT-
T ss_pred c---------------------------------ccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh-
Confidence 2 223466777777777765544566777777777777777753222
Q ss_pred hhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccc
Q 036984 354 CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 433 (603)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 433 (603)
..+..+++|+.|+|++|++++..+..|..+++|++|+|++
T Consensus 266 ----------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 266 ----------------------------------------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp ----------------------------------------TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred ----------------------------------------hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 1233456777777777777777777788888888888888
Q ss_pred ccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcc
Q 036984 434 NNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRV 491 (603)
Q Consensus 434 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~ 491 (603)
|++++..+..|..+++|++|++++|++.+..+..+-......+++.++...+..|..+
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~ 363 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFV 363 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGG
T ss_pred CcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHH
Confidence 8888766677788888888888888887654421122233445566666666555443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.3e-34 Score=301.23 Aligned_cols=354 Identities=19% Similarity=0.160 Sum_probs=246.9
Q ss_pred hcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCc
Q 036984 30 LMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLR 108 (603)
Q Consensus 30 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (603)
.+++|++|++++|.+++. + .+..+++|++|++++|.+++++ +. +++|++|++++|.+++. + ++++++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~---~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM---T-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HHTTCCEEECCSSCCCCC---T-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred HcCCCCEEEccCCCcccC---h-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 378899999999988863 2 5888999999999999988874 44 88999999999998884 3 78899999
Q ss_pred EEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccc
Q 036984 109 ELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEI 188 (603)
Q Consensus 109 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~ 188 (603)
+|++++|.+++. + ++++++|++|++++|.+++ + .+..+++|++|++++|...+... +..
T Consensus 110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~~---~~~----------- 168 (457)
T 3bz5_A 110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKLD---VTP----------- 168 (457)
T ss_dssp EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCCC---CTT-----------
T ss_pred EEECCCCcCCee-c--CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCcccccc---ccc-----------
Confidence 999999998863 4 8889999999999999885 3 37788999999999985432221 222
Q ss_pred eeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccc
Q 036984 189 YLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQG 268 (603)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~ 268 (603)
+++|+.|++++|.+++. + +..+++|+.|++++|.+++. + +..+++|+.|++++|.+++
T Consensus 169 -------------l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~-~-----l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 169 -------------QTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL-D-----LNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp -------------CTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC-C-----CTTCTTCSEEECCSSCCSC
T ss_pred -------------CCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee-c-----cccCCCCCEEECcCCcccc
Confidence 23566666666666552 2 55666677777777766543 1 4556667777777777663
Q ss_pred cCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCc
Q 036984 269 HIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS 348 (603)
Q Consensus 269 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 348 (603)
+| +..+++|+.|++++|.+..+....+.. +...--...+|+.|++++|.+.+.+| +..+++|+.|++++|+..
T Consensus 227 -ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~-L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 227 -ID---VTPLTQLTYFDCSVNPLTELDVSTLSK-LTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp -CC---CTTCTTCSEEECCSSCCSCCCCTTCTT-CCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred -cC---ccccCCCCEEEeeCCcCCCcCHHHCCC-CCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence 55 233666777776666655432111110 00000001245666666666655554 467788999999999887
Q ss_pred cCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCE
Q 036984 349 GHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA 428 (603)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 428 (603)
+.+|.....+. .-.+..+++|+.|++++|++++. + +..+++|+.
T Consensus 300 ~~l~~~~~~L~---------------------------------~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~ 343 (457)
T 3bz5_A 300 YLLDCQAAGIT---------------------------------ELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKS 343 (457)
T ss_dssp CEEECTTCCCS---------------------------------CCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSE
T ss_pred ceeccCCCcce---------------------------------EechhhcccCCEEECCCCccccc-c--cccCCcCcE
Confidence 66663221111 00133457899999999999874 3 888899999
Q ss_pred EecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcc
Q 036984 429 LNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRV 491 (603)
Q Consensus 429 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~ 491 (603)
|++++|++++ ++.|+.|++++|.+.+. ..+..|+.+++++|+++|.+|..+
T Consensus 344 L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 344 LSCVNAHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp EECCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred EECCCCCCCC--------ccccccccccCCcEEec----ceeeecCccccccCcEEEEcChhH
Confidence 9999999985 35677788999988865 245678889999999999999754
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.3e-35 Score=298.27 Aligned_cols=333 Identities=18% Similarity=0.191 Sum_probs=202.9
Q ss_pred CCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEE
Q 036984 56 QLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVL 134 (603)
Q Consensus 56 ~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 134 (603)
.+++++.|++++|.++.+++..|. +++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 457888888888888888877777 8888888888888887777788888888888888888887777778888888888
Q ss_pred EcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCC
Q 036984 135 DVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYR 214 (603)
Q Consensus 135 ~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 214 (603)
++++|.++ .+|...+..+++|++|++++|.+...
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~--------------------------------------------- 156 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI--------------------------------------------- 156 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBC---------------------------------------------
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCcc---------------------------------------------
Confidence 88888887 46664667788888888888766421
Q ss_pred CCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccc
Q 036984 215 DDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDL 294 (603)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l 294 (603)
.+..+..+++|+.|++++|.+++. + +..+++|+.|++++|.+. .++ ..++|+.|++++|.+..+
T Consensus 157 ----~~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~l~~L~~L~l~~n~l~-~~~-----~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 157 ----EDDTFQATTSLQNLQLSSNRLTHV-D-----LSLIPSLFHANVSYNLLS-TLA-----IPIAVEELDASHNSINVV 220 (390)
T ss_dssp ----CTTTTSSCTTCCEEECCSSCCSBC-C-----GGGCTTCSEEECCSSCCS-EEE-----CCSSCSEEECCSSCCCEE
T ss_pred ----ChhhccCCCCCCEEECCCCcCCcc-c-----cccccccceeeccccccc-ccC-----CCCcceEEECCCCeeeec
Confidence 122233444455555555554432 1 334455555555555554 211 123555555555554433
Q ss_pred cCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcC
Q 036984 295 SYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDH 374 (603)
Q Consensus 295 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (603)
.. ...++|++|++++|.+++. ..+..+++|++|++++|.+++..|..
T Consensus 221 ~~-----------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~-------------------- 267 (390)
T 3o6n_A 221 RG-----------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP-------------------- 267 (390)
T ss_dssp EC-----------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG--------------------
T ss_pred cc-----------cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH--------------------
Confidence 21 0124555666666655532 34555566666666666555332322
Q ss_pred CCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEe
Q 036984 375 ASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLD 454 (603)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 454 (603)
+..+++|+.|++++|++++ ++..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 268 ---------------------~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 268 ---------------------FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp ---------------------GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred ---------------------ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence 2224456666666666553 3444455666666666666666 4455555666666666
Q ss_pred CCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCC
Q 036984 455 LSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYG 510 (603)
Q Consensus 455 Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~ 510 (603)
+++|+++.. + +..+++|+.|++++|++.+.... .-+..+....+.+++..|.
T Consensus 325 L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 325 LDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCK 376 (390)
T ss_dssp CCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCC
T ss_pred CCCCcccee-C-chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCceec
Confidence 666666632 2 44566667777777766653221 2233444455666666664
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.5e-34 Score=298.88 Aligned_cols=269 Identities=21% Similarity=0.223 Sum_probs=157.5
Q ss_pred CCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCC-------------CCEEEccCCcC
Q 036984 4 FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVH-------------LQELYIRDNDL 70 (603)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~-------------L~~L~Ls~n~i 70 (603)
.+.|++|+++++.+. .+...+ ..+++|++|++++|.+.+. .+..++++++ +++|++++|.+
T Consensus 10 ~~~L~~L~l~~n~l~---~iP~~i-~~L~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLT---EMPVEA-ENVKSKTEYYNAWSEWERN--APPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHT--SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cccchhhhcccCchh---hCChhH-hcccchhhhhccCCccccc--CCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 466778888877663 222222 3367788888888776542 3455666665 47888888877
Q ss_pred CCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccc
Q 036984 71 RDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPL 150 (603)
Q Consensus 71 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 150 (603)
++++.. .++|++|++++|.+++ +|.. .++|++|++++|.+++. +.. .++|++|++++|.+++ +|. +
T Consensus 84 ~~lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp~--~ 149 (454)
T 1jl5_A 84 SSLPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LPE--L 149 (454)
T ss_dssp SCCCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CCC--C
T ss_pred ccCCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Ccc--c
Confidence 776542 4678888888887777 4542 36788888888877642 221 1578888888887774 553 7
Q ss_pred cCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCC
Q 036984 151 MLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLK 230 (603)
Q Consensus 151 ~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (603)
..+++|++|++++|.++.... . ..+|+.|++++|.+.+ +| .+..+++|+
T Consensus 150 ~~l~~L~~L~l~~N~l~~lp~--~---------------------------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~ 198 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKLPD--L---------------------------PPSLEFIAAGNNQLEE-LP-ELQNLPFLT 198 (454)
T ss_dssp TTCTTCCEEECCSSCCSCCCC--C---------------------------CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred CCCCCCCEEECCCCcCcccCC--C---------------------------cccccEEECcCCcCCc-Cc-cccCCCCCC
Confidence 777888888888877653111 0 0166777777777665 33 466777777
Q ss_pred EEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCC
Q 036984 231 NADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL 310 (603)
Q Consensus 231 ~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l 310 (603)
.|++++|.+.+ +|.. .++|++|++++|.+. .+|. +..+++|++|++++|.+..+. .. .
T Consensus 199 ~L~l~~N~l~~-l~~~------~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l~---------~~---~ 256 (454)
T 1jl5_A 199 AIYADNNSLKK-LPDL------PLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTLP---------DL---P 256 (454)
T ss_dssp EEECCSSCCSS-CCCC------CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSCC---------SC---C
T ss_pred EEECCCCcCCc-CCCC------cCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCccc---------cc---c
Confidence 77777777664 3332 246777777777776 5663 334677777777776655332 11 3
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984 311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG 349 (603)
Q Consensus 311 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 349 (603)
++|++|++++|.+++ +|.. .++|+.|++++|++++
T Consensus 257 ~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 257 PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred cccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 567777777777764 3322 3667777777777653
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9e-34 Score=290.57 Aligned_cols=310 Identities=22% Similarity=0.252 Sum_probs=253.0
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE 109 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (603)
+++++.|+++++.+... .+..|.++++|++|++++|.+.++++..|. +++|++|++++|.+.+..|..|.++++|++
T Consensus 44 l~~l~~l~l~~~~l~~l--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKL--PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEE--CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhC--ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 68999999999988752 334578999999999999999999988888 999999999999999988888999999999
Q ss_pred EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984 110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY 189 (603)
Q Consensus 110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~ 189 (603)
|++++|.++...+..|.++++|++|++++|.+.+ ++...+..+++|++|++++|.++.. +
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~------------------ 181 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV-D------------------ 181 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC-C------------------
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCcc-c------------------
Confidence 9999999996666668999999999999999985 4444789999999999999976521 1
Q ss_pred eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccccc
Q 036984 190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGH 269 (603)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 269 (603)
+..+++|+.+++++|.+.+ +...++|+.|++++|.+. .
T Consensus 182 ---------------------------------~~~l~~L~~L~l~~n~l~~--------~~~~~~L~~L~l~~n~l~-~ 219 (390)
T 3o6n_A 182 ---------------------------------LSLIPSLFHANVSYNLLST--------LAIPIAVEELDASHNSIN-V 219 (390)
T ss_dssp ---------------------------------GGGCTTCSEEECCSSCCSE--------EECCSSCSEEECCSSCCC-E
T ss_pred ---------------------------------cccccccceeecccccccc--------cCCCCcceEEECCCCeee-e
Confidence 2234456667777766543 233457888888888887 4
Q ss_pred CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984 270 IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG 349 (603)
Q Consensus 270 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 349 (603)
+|... .++|+.|++++|.+.+. .+++.+++|++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 220 ~~~~~---~~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (390)
T 3o6n_A 220 VRGPV---NVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286 (390)
T ss_dssp EECCC---CSSCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE
T ss_pred ccccc---cccccEEECCCCCCccc----------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc
Confidence 55433 46889998888877543 356778999999999999998889999999999999999999873
Q ss_pred CCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEE
Q 036984 350 HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL 429 (603)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 429 (603)
. |. ....+++|+.|++++|.++ .+|..+..+++|++|
T Consensus 287 ~-~~-----------------------------------------~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 287 L-NL-----------------------------------------YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp E-EC-----------------------------------------SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred c-Cc-----------------------------------------ccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 1 11 1133678999999999998 567778889999999
Q ss_pred ecccccccccCCcCCcCCCCCCEEeCCCCcCccc
Q 036984 430 NLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGK 463 (603)
Q Consensus 430 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 463 (603)
++++|+++.. + +..+++|+.|++++|++.+.
T Consensus 324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 9999999854 3 67789999999999999864
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.4e-34 Score=307.02 Aligned_cols=334 Identities=18% Similarity=0.196 Sum_probs=224.6
Q ss_pred CCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEE
Q 036984 56 QLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVL 134 (603)
Q Consensus 56 ~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 134 (603)
.+++++.+++++|.+..+++..|. +++|++|++++|.+.+..|..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 356777888888877777777776 7788888888888777666677788888888888888877777777778888888
Q ss_pred EcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCC
Q 036984 135 DVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYR 214 (603)
Q Consensus 135 ~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 214 (603)
+|++|.++ .+|...|..+++|++|++++|.+.
T Consensus 129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~----------------------------------------------- 160 (597)
T 3oja_B 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE----------------------------------------------- 160 (597)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-----------------------------------------------
T ss_pred EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCC-----------------------------------------------
Confidence 88888777 455545677777777777777654
Q ss_pred CCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccc
Q 036984 215 DDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDL 294 (603)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l 294 (603)
+..+..+..+++|+.|++++|.+.+.. +..+++|+.|++++|.+.+ ++ ..++|+.|++++|.+..+
T Consensus 161 --~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~l~~L~~L~l~~n~l~~-l~-----~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 161 --RIEDDTFQATTSLQNLQLSSNRLTHVD------LSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHNSINVV 226 (597)
T ss_dssp --BCCTTTTTTCTTCCEEECTTSCCSBCC------GGGCTTCSEEECCSSCCSE-EE-----CCTTCSEEECCSSCCCEE
T ss_pred --CCChhhhhcCCcCcEEECcCCCCCCcC------hhhhhhhhhhhcccCcccc-cc-----CCchhheeeccCCccccc
Confidence 222334555566666666666665431 3456667777777776652 21 134677777777666543
Q ss_pred cCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcC
Q 036984 295 SYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDH 374 (603)
Q Consensus 295 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (603)
.. .. .++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+
T Consensus 227 ~~-----~~------~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~------------------- 274 (597)
T 3oja_B 227 RG-----PV------NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF------------------- 274 (597)
T ss_dssp EC-----SC------CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG-------------------
T ss_pred cc-----cc------CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh-------------------
Confidence 31 11 24677777777777642 556677777777777777765444333
Q ss_pred CCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEe
Q 036984 375 ASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLD 454 (603)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 454 (603)
..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+
T Consensus 275 ----------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 275 ----------------------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp ----------------------TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred ----------------------cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence 235677777777777774 4555566778888888888887 5666677777888888
Q ss_pred CCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCC
Q 036984 455 LSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQ 511 (603)
Q Consensus 455 Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~ 511 (603)
+++|++++. | +..+++|+.|++++|++.+..+. ..+..+....+.+++..|+.
T Consensus 331 L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 331 LDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCCc
Confidence 888887743 3 55677888888888888765432 22445555567777777754
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-32 Score=285.95 Aligned_cols=347 Identities=18% Similarity=0.160 Sum_probs=270.6
Q ss_pred cccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCC
Q 036984 52 QGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTS 130 (603)
Q Consensus 52 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 130 (603)
..+.++++|++|++++|.+++++ .+. +++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 46788999999999999999875 355 99999999999999984 4 88999999999999999864 3 899999
Q ss_pred CCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEec
Q 036984 131 LQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISL 210 (603)
Q Consensus 131 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 210 (603)
|++|++++|.+++ ++ +..+++|++|++++|.+++. + + ..+.+|+.|++
T Consensus 108 L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-~---l------------------------~~l~~L~~L~l 155 (457)
T 3bz5_A 108 LTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-D---V------------------------SHNTQLTELDC 155 (457)
T ss_dssp CCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-C---C------------------------TTCTTCCEEEC
T ss_pred CCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-c---c------------------------ccCCcCCEEEC
Confidence 9999999999985 43 78999999999999987632 1 1 22337888889
Q ss_pred cCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCC
Q 036984 211 SGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNA 290 (603)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 290 (603)
++|...+.+ .+..+++|+.|++++|.+++ +| +..+++|+.|++++|.+++ ++ +..+++|+.|++++|+
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~-----l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD-----VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNK 223 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC-----CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSC
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccce-ec-----cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCc
Confidence 888655444 47789999999999999986 33 5678999999999999984 44 3448999999999998
Q ss_pred cccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCC
Q 036984 291 FNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAP 370 (603)
Q Consensus 291 l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~ 370 (603)
+..+ | ++.+++|++|++++|++++.. ...+++|+.|++++|++...--
T Consensus 224 l~~i---------p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l------------------ 271 (457)
T 3bz5_A 224 LTEI---------D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDL------------------ 271 (457)
T ss_dssp CSCC---------C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCC------------------
T ss_pred cccc---------C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEEC------------------
Confidence 7643 3 567899999999999999764 3556777777777776642100
Q ss_pred CCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCch--------hccCcCcCCEEecccccccccCCc
Q 036984 371 TWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPT--------QIGYLTRIRALNLSHNNLTGTIPI 442 (603)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~l~~l~~L~~L~Ls~N~l~~~~~~ 442 (603)
.+...........+++|+.|++++|...+.+|. .+..+++|++|++++|++++. +
T Consensus 272 ---------------~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~- 334 (457)
T 3bz5_A 272 ---------------THNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D- 334 (457)
T ss_dssp ---------------TTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C-
T ss_pred ---------------CCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c-
Confidence 000000011123468899999999987655553 255678999999999999974 3
Q ss_pred CCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984 443 TFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 443 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~ 512 (603)
+.++++|+.||+++|++++ ++.|..|++++|.++|. ..+..+..++++.|.+...-|
T Consensus 335 -l~~l~~L~~L~l~~N~l~~-------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 335 -VSHNTKLKSLSCVNAHIQD-------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp -CTTCTTCSEEECCSSCCCB-------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred -cccCCcCcEEECCCCCCCC-------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 8899999999999999985 35678889999999985 345667778888887765333
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-32 Score=285.18 Aligned_cols=373 Identities=25% Similarity=0.292 Sum_probs=214.4
Q ss_pred CCCCCCCceecccccccccc-c----chHH-----HHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcC
Q 036984 1 FHEFKNLEHLVMDQMLVEVN-T----SFLQ-----IVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDL 70 (603)
Q Consensus 1 f~~~~~L~~L~l~~~~~~~~-~----~~~~-----~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i 70 (603)
|.++++|++|++++|.+... . .+.. .......++++|++++|.+++. +. -.++|++|++++|.+
T Consensus 30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l---p~---~~~~L~~L~l~~n~l 103 (454)
T 1jl5_A 30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL---PE---LPPHLESLVASCNSL 103 (454)
T ss_dssp ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC---CS---CCTTCSEEECCSSCC
T ss_pred HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC---CC---CcCCCCEEEccCCcC
Confidence 46789999999999865411 1 1111 1111134689999999998763 22 247899999999999
Q ss_pred CCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccc
Q 036984 71 RDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPL 150 (603)
Q Consensus 71 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 150 (603)
++++.. .++|++|++++|++++ ++.. .++|++|++++|.+++ +| .|+++++|++|++++|.+++ +|. .
T Consensus 104 ~~lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~-~- 171 (454)
T 1jl5_A 104 TELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD-L- 171 (454)
T ss_dssp SSCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC-C-
T ss_pred Cccccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC-C-
Confidence 986642 5899999999999987 3321 2689999999999996 66 59999999999999999984 665 2
Q ss_pred cCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCC
Q 036984 151 MLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLK 230 (603)
Q Consensus 151 ~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (603)
..+|++|++++|.++... .+.+++ +|+.|++++|.+.+ +|.. .++|+
T Consensus 172 --~~~L~~L~L~~n~l~~l~---~~~~l~------------------------~L~~L~l~~N~l~~-l~~~---~~~L~ 218 (454)
T 1jl5_A 172 --PPSLEFIAAGNNQLEELP---ELQNLP------------------------FLTAIYADNNSLKK-LPDL---PLSLE 218 (454)
T ss_dssp --CTTCCEEECCSSCCSSCC---CCTTCT------------------------TCCEEECCSSCCSS-CCCC---CTTCC
T ss_pred --cccccEEECcCCcCCcCc---cccCCC------------------------CCCEEECCCCcCCc-CCCC---cCccc
Confidence 359999999999887421 244444 55556666665543 2221 13666
Q ss_pred EEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCC
Q 036984 231 NADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL 310 (603)
Q Consensus 231 ~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l 310 (603)
.|++++|.+. .+|. +..+++|++|++++|.+. .+|.. .++|+.|++++|.+..+ |.. .
T Consensus 219 ~L~l~~n~l~-~lp~----~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~N~l~~l---------~~~---~ 276 (454)
T 1jl5_A 219 SIVAGNNILE-ELPE----LQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTDL---------PEL---P 276 (454)
T ss_dssp EEECCSSCCS-SCCC----CTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSCC---------CCC---C
T ss_pred EEECcCCcCC-cccc----cCCCCCCCEEECCCCcCC-ccccc----ccccCEEECCCCccccc---------Ccc---c
Confidence 6666666665 4443 455666667777666665 34431 35666666666655432 211 2
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCC
Q 036984 311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPM 390 (603)
Q Consensus 311 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (603)
++|++|++++|.+++... ..++|+.|++++|++++. +
T Consensus 277 ~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~-------------------------------------- 313 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-C-------------------------------------- 313 (454)
T ss_dssp TTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-C--------------------------------------
T ss_pred CcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-c--------------------------------------
Confidence 566667777666664211 114666777776666520 0
Q ss_pred CcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcc--cCC-Cc
Q 036984 391 GKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG--KIP-QL 467 (603)
Q Consensus 391 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~-~~ 467 (603)
..+++|+.|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+| .+
T Consensus 314 ------~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 314 ------DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp ------CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred ------CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHH
Confidence 012356666666666664 3332 356666666666666 3444 35666666666666665 444 44
Q ss_pred cCC-------------CCCCceecccCcccc--cCCCcccccCCCCcccccCCcCCC
Q 036984 468 IVL-------------TTLAVFRVAYNNLSG--KIPDRVAQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 468 ~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~l~~l~~~~l~gn~~~c 509 (603)
..+ ++|+.|++++|++++ .+|.. ++.+.+.+|.+.|
T Consensus 380 ~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~ 430 (454)
T 1jl5_A 380 EDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVD 430 (454)
T ss_dssp CEEECCC--------------------------------------------------
T ss_pred HhhhhcccccccccccCcCCEEECCCCcCCccccchhh------HhheeCcCcccCC
Confidence 444 789999999999987 66654 3445566665544
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.2e-32 Score=273.69 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=37.2
Q ss_pred cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceec
Q 036984 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRV 478 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l 478 (603)
+++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..| +..+++|++|++
T Consensus 264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 340 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADF 340 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESS
T ss_pred CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeeh
Confidence 33444444444444422 124444445555555555544444444445555555555555443333 444455555555
Q ss_pred ccCcc
Q 036984 479 AYNNL 483 (603)
Q Consensus 479 ~~N~l 483 (603)
++|++
T Consensus 341 ~~N~i 345 (347)
T 4fmz_A 341 ANQVI 345 (347)
T ss_dssp SCC--
T ss_pred hhhcc
Confidence 55544
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-32 Score=277.19 Aligned_cols=303 Identities=25% Similarity=0.373 Sum_probs=199.5
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE 109 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (603)
+++|++|+++++.+... ..+..+++|++|++++|.++++++ +. +++|++|++++|.++.. ..+..+++|++
T Consensus 43 l~~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred cccccEEEEeCCccccc----hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 45555555555555431 124455555555555555555444 33 55555555555555442 23555555555
Q ss_pred EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984 110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY 189 (603)
Q Consensus 110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~ 189 (603)
|++++|.+++..+ +.++++|++|++++|.....++ .+..+++|++|++++|
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~------------------------- 165 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTES------------------------- 165 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSS-------------------------
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCC-------------------------
Confidence 5555555543222 4555555555555553332222 2444455555554444
Q ss_pred eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccccc
Q 036984 190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGH 269 (603)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 269 (603)
.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.+++++|.+. .
T Consensus 166 ------------------------~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~-~ 213 (347)
T 4fmz_A 166 ------------------------KVKDVTP--IANLTDLYSLSLNYNQIEDISP-----LASLTSLHYFTAYVNQIT-D 213 (347)
T ss_dssp ------------------------CCCCCGG--GGGCTTCSEEECTTSCCCCCGG-----GGGCTTCCEEECCSSCCC-C
T ss_pred ------------------------CcCCchh--hccCCCCCEEEccCCccccccc-----ccCCCccceeecccCCCC-C
Confidence 3333222 6677889999999998864332 567889999999999887 4
Q ss_pred CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984 270 IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG 349 (603)
Q Consensus 270 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 349 (603)
++. +..+++|++|++++|.+.++. . +..+++|++|++++|.+++. ..+..+++|+.|++++|++++
T Consensus 214 ~~~--~~~~~~L~~L~l~~n~l~~~~---------~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 214 ITP--VANMTRLNSLKIGNNKITDLS---------P-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCG---------G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred Cch--hhcCCcCCEEEccCCccCCCc---------c-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC
Confidence 443 445889999999988876543 1 66788999999999998864 468888999999999998863
Q ss_pred CCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEE
Q 036984 350 HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL 429 (603)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 429 (603)
. ..+..+++|+.|++++|.+++..+..+..+++|++|
T Consensus 280 ~-------------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 280 I-------------------------------------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp C-------------------------------------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred C-------------------------------------------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 1 224557889999999999988888888999999999
Q ss_pred ecccccccccCCcCCcCCCCCCEEeCCCCcCc
Q 036984 430 NLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461 (603)
Q Consensus 430 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 461 (603)
++++|++++..| +..+++|++||+++|+++
T Consensus 317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999986655 778899999999999876
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-32 Score=296.74 Aligned_cols=311 Identities=22% Similarity=0.253 Sum_probs=255.3
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE 109 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (603)
+.+++.+++++|.+.. +.+..|.++++|++|++++|.++++++..|. +++|++|++++|.+.+..|..|+++++|++
T Consensus 50 l~~l~~l~l~~~~l~~--lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCC--cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 6889999999998875 2345678899999999999999999998888 999999999999999988888999999999
Q ss_pred EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccce
Q 036984 110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIY 189 (603)
Q Consensus 110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~ 189 (603)
|+|++|.+++..+..|+++++|++|++++|.+++..+. .+..+++|++|++++|.++.. +
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~-~------------------ 187 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV-D------------------ 187 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBC-C------------------
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCc-C------------------
Confidence 99999999977777789999999999999999864444 789999999999999976521 1
Q ss_pred eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccccc
Q 036984 190 LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGH 269 (603)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 269 (603)
+..+++|+.|++++|.+.+ +...++|+.|++++|.+. .
T Consensus 188 ---------------------------------~~~l~~L~~L~l~~n~l~~--------l~~~~~L~~L~ls~n~l~-~ 225 (597)
T 3oja_B 188 ---------------------------------LSLIPSLFHANVSYNLLST--------LAIPIAVEELDASHNSIN-V 225 (597)
T ss_dssp ---------------------------------GGGCTTCSEEECCSSCCSE--------EECCTTCSEEECCSSCCC-E
T ss_pred ---------------------------------hhhhhhhhhhhcccCcccc--------ccCCchhheeeccCCccc-c
Confidence 2234556677777776653 233467888888888887 4
Q ss_pred CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984 270 IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG 349 (603)
Q Consensus 270 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 349 (603)
++... .++|+.|++++|.+.+ +.+++.+++|++|++++|.+++..|..+..+++|+.|++++|.+++
T Consensus 226 ~~~~~---~~~L~~L~L~~n~l~~----------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (597)
T 3oja_B 226 VRGPV---NVELTILKLQHNNLTD----------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292 (597)
T ss_dssp EECSC---CSCCCEEECCSSCCCC----------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred ccccc---CCCCCEEECCCCCCCC----------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence 55433 3588998888887653 3567778999999999999999889999999999999999999974
Q ss_pred CCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEE
Q 036984 350 HIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL 429 (603)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 429 (603)
+|. ....+++|+.|+|++|.++ .+|..+..+++|+.|
T Consensus 293 -l~~-----------------------------------------~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 293 -LNL-----------------------------------------YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp -EEC-----------------------------------------SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred -CCc-----------------------------------------ccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 221 1133678999999999999 677778899999999
Q ss_pred ecccccccccCCcCCcCCCCCCEEeCCCCcCcccC
Q 036984 430 NLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI 464 (603)
Q Consensus 430 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 464 (603)
+|++|.+++. | +..+++|+.|++++|++.+..
T Consensus 330 ~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 330 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred ECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 9999999854 3 667889999999999998653
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.8e-33 Score=273.61 Aligned_cols=257 Identities=29% Similarity=0.463 Sum_probs=232.0
Q ss_pred cccEEeccCCCCCC--CcChhhccCCCCCEEEcCC-CcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCC
Q 036984 204 QLTSISLSGYRDDG--TFPKFLYHQHDLKNADLSH-LNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPG 280 (603)
Q Consensus 204 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~ 280 (603)
+++.|+++++.+.+ .+|..+..+++|+.|++++ |.+.+.+|.. +..+++|++|++++|.+.+.+|..+.. +++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~ 126 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA---IAKLTQLHYLYITHTNVSGAIPDFLSQ-IKT 126 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG---GGGCTTCSEEEEEEECCEEECCGGGGG-CTT
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh---HhcCCCCCEEECcCCeeCCcCCHHHhC-CCC
Confidence 79999999999998 8899999999999999995 9999888876 788999999999999998788876655 999
Q ss_pred CcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCC-CCCEEecCCCcCccCCChhhhccc
Q 036984 281 LMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLK-EVRLIDLSHNNLSGHIPFCLVNTA 359 (603)
Q Consensus 281 L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~ 359 (603)
|++|++++|.+. +.+|..++.+++|++|++++|.+++.+|..+..++ +|+.|++++|++++.+|..+..
T Consensus 127 L~~L~Ls~N~l~--------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-- 196 (313)
T 1ogq_A 127 LVTLDFSYNALS--------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-- 196 (313)
T ss_dssp CCEEECCSSEEE--------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--
T ss_pred CCEEeCCCCccC--------CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--
Confidence 999998887664 46788889999999999999999999999999998 9999999999998777755443
Q ss_pred ccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccccccccc
Q 036984 360 LSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT 439 (603)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 439 (603)
++ |+.|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 197 ---------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 197 ---------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp ---------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred ---------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 34 99999999999999999999999999999999999976
Q ss_pred CCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCCCCCCC
Q 036984 440 IPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQPLSKSC 517 (603)
Q Consensus 440 ~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~~~~~C 517 (603)
.|. +..+++|++|++++|++++.+| .+..+++|++|++++|++++.+|.. ..++.++.+++.+||++|+.|.. .|
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCC-CC
Confidence 665 8889999999999999998888 7899999999999999999999986 88999999999999999987765 46
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.1e-30 Score=257.93 Aligned_cols=289 Identities=20% Similarity=0.202 Sum_probs=173.7
Q ss_pred CCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcc
Q 036984 58 VHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVS 137 (603)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 137 (603)
.+++.++++++.++.++... .+++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 36778888877777766544 4677778888888777666677778888888888887776667777777888888887
Q ss_pred cCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCC
Q 036984 138 YNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDG 217 (603)
Q Consensus 138 ~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (603)
+|.++ .+|...+ ++|++|++++|.+. .
T Consensus 109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~-------------------------------------------------~ 135 (330)
T 1xku_A 109 KNQLK-ELPEKMP---KTLQELRVHENEIT-------------------------------------------------K 135 (330)
T ss_dssp SSCCS-BCCSSCC---TTCCEEECCSSCCC-------------------------------------------------B
T ss_pred CCcCC-ccChhhc---ccccEEECCCCccc-------------------------------------------------c
Confidence 77776 4554221 45566666555443 2
Q ss_pred CcChhhccCCCCCEEEcCCCcccC--CCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCccccc
Q 036984 218 TFPKFLYHQHDLKNADLSHLNLSG--EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLS 295 (603)
Q Consensus 218 ~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 295 (603)
..+..+..+++|+.|++++|.+.. ..+.. +..+++|++|++++|.+. .+|...
T Consensus 136 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~~l~~L~~L~l~~n~l~-~l~~~~--------------------- 190 (330)
T 1xku_A 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGA---FQGMKKLSYIRIADTNIT-TIPQGL--------------------- 190 (330)
T ss_dssp BCHHHHTTCTTCCEEECCSSCCCGGGBCTTG---GGGCTTCCEEECCSSCCC-SCCSSC---------------------
T ss_pred cCHhHhcCCccccEEECCCCcCCccCcChhh---ccCCCCcCEEECCCCccc-cCCccc---------------------
Confidence 223344555555666666555532 22222 334444555555544444 333221
Q ss_pred CCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCC
Q 036984 296 YNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHA 375 (603)
Q Consensus 296 ~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (603)
.++|++|++++|.+++..+..+..+++|+.|++++|.+++..+.
T Consensus 191 --------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------------------- 234 (330)
T 1xku_A 191 --------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG---------------------- 234 (330)
T ss_dssp --------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT----------------------
T ss_pred --------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh----------------------
Confidence 14566666666666655556666666666666666666532221
Q ss_pred CCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCC------CC
Q 036984 376 SAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNL------KQ 449 (603)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~ 449 (603)
.+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|... ..
T Consensus 235 -------------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 235 -------------------SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp -------------------TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred -------------------hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence 2233456666666666666 555566677777777777777776555555432 56
Q ss_pred CCEEeCCCCcCcc--cCC-CccCCCCCCceecccCc
Q 036984 450 IESLDLSYNLLHG--KIP-QLIVLTTLAVFRVAYNN 482 (603)
Q Consensus 450 L~~L~Ls~N~l~~--~~~-~~~~l~~L~~L~l~~N~ 482 (603)
++.|++++|++.. ..| .+..+.+++.+++++|+
T Consensus 295 l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccceEeecCcccccccCccccccccceeEEEecccC
Confidence 7777777777753 222 56667777777777663
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.5e-30 Score=260.39 Aligned_cols=287 Identities=20% Similarity=0.212 Sum_probs=161.6
Q ss_pred CCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEccc
Q 036984 59 HLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY 138 (603)
Q Consensus 59 ~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 138 (603)
+++.++++++.++.++... .++|++|++++|.+.+..+..|.++++|++|++++|.+++..|.+|+++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5777777777777666544 35777777777777776666777777777777777777766677777777777777777
Q ss_pred CcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCC
Q 036984 139 NQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGT 218 (603)
Q Consensus 139 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 218 (603)
|.++ .+|...+ ++|++|++++|.+. ..
T Consensus 112 n~l~-~l~~~~~---~~L~~L~l~~n~i~-------------------------------------------------~~ 138 (332)
T 2ft3_A 112 NHLV-EIPPNLP---SSLVELRIHDNRIR-------------------------------------------------KV 138 (332)
T ss_dssp SCCC-SCCSSCC---TTCCEEECCSSCCC-------------------------------------------------CC
T ss_pred CcCC-ccCcccc---ccCCEEECCCCccC-------------------------------------------------cc
Confidence 7776 4554221 45555555555443 22
Q ss_pred cChhhccCCCCCEEEcCCCcccC--CCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccC
Q 036984 219 FPKFLYHQHDLKNADLSHLNLSG--EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSY 296 (603)
Q Consensus 219 ~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 296 (603)
.+..+..+++|+.|++++|.+.. ..+.. +..+ +|+.|++++|.++ .+|..++ ++|+
T Consensus 139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~-------------- 196 (332)
T 2ft3_A 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGA---FDGL-KLNYLRISEAKLT-GIPKDLP---ETLN-------------- 196 (332)
T ss_dssp CSGGGSSCSSCCEEECCSCCCBGGGSCTTS---SCSC-CCSCCBCCSSBCS-SCCSSSC---SSCS--------------
T ss_pred CHhHhCCCccCCEEECCCCccccCCCCccc---ccCC-ccCEEECcCCCCC-ccCcccc---CCCC--------------
Confidence 23345555666666666666542 33332 2333 5666666666655 3443322 3444
Q ss_pred CcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCC
Q 036984 297 NRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHAS 376 (603)
Q Consensus 297 ~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (603)
+|++++|.+++..+..+..+++|+.|++++|++++..+.
T Consensus 197 ------------------~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~----------------------- 235 (332)
T 2ft3_A 197 ------------------ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG----------------------- 235 (332)
T ss_dssp ------------------CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT-----------------------
T ss_pred ------------------EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh-----------------------
Confidence 444444444444444444555555555555554422111
Q ss_pred CCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCC------CCC
Q 036984 377 APALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNL------KQI 450 (603)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L 450 (603)
.+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.+. ..|
T Consensus 236 ------------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l 296 (332)
T 2ft3_A 236 ------------------SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296 (332)
T ss_dssp ------------------GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCB
T ss_pred ------------------HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccc
Confidence 1222445555555555555 444455556666666666666665544444432 456
Q ss_pred CEEeCCCCcCc--ccCC-CccCCCCCCceecccCc
Q 036984 451 ESLDLSYNLLH--GKIP-QLIVLTTLAVFRVAYNN 482 (603)
Q Consensus 451 ~~L~Ls~N~l~--~~~~-~~~~l~~L~~L~l~~N~ 482 (603)
+.|++++|++. +..| .+..+++|+.+++++|+
T Consensus 297 ~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cceEeecCcccccccCcccccccchhhhhhccccc
Confidence 66777777665 3333 56666677777776663
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.3e-29 Score=253.34 Aligned_cols=291 Identities=18% Similarity=0.210 Sum_probs=210.8
Q ss_pred CCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEE
Q 036984 81 TSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELI 160 (603)
Q Consensus 81 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 160 (603)
.+++.++++++.++. +|..+. ++|++|++++|++++..+..|+++++|++|++++|.+++..|. .+..+++|++|+
T Consensus 31 c~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEE
T ss_pred CCCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEE
Confidence 367777777777765 444332 5677777777777766666677777777777777777643343 566666666666
Q ss_pred ccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCccc
Q 036984 161 LSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLS 240 (603)
Q Consensus 161 l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~ 240 (603)
+++|.++
T Consensus 107 Ls~n~l~------------------------------------------------------------------------- 113 (330)
T 1xku_A 107 LSKNQLK------------------------------------------------------------------------- 113 (330)
T ss_dssp CCSSCCS-------------------------------------------------------------------------
T ss_pred CCCCcCC-------------------------------------------------------------------------
Confidence 6666443
Q ss_pred CCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccC
Q 036984 241 GEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLAN 320 (603)
Q Consensus 241 ~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~ 320 (603)
.+|..+ .++|++|++++|.+. .++...+..+++|+.|++++|.+.... ..+..+..+++|++|++++
T Consensus 114 -~l~~~~-----~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 114 -ELPEKM-----PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG------IENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp -BCCSSC-----CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGG------BCTTGGGGCTTCCEEECCS
T ss_pred -ccChhh-----cccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccC------cChhhccCCCCcCEEECCC
Confidence 122211 146777777777777 566666666888888888887765422 4456677789999999999
Q ss_pred CcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcc
Q 036984 321 NYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILT 400 (603)
Q Consensus 321 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 400 (603)
|.++. +|..+. ++|+.|++++|++++..|.. +..++
T Consensus 181 n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~-----------------------------------------~~~l~ 216 (330)
T 1xku_A 181 TNITT-IPQGLP--PSLTELHLDGNKITKVDAAS-----------------------------------------LKGLN 216 (330)
T ss_dssp SCCCS-CCSSCC--TTCSEEECTTSCCCEECTGG-----------------------------------------GTTCT
T ss_pred Ccccc-CCcccc--ccCCEEECCCCcCCccCHHH-----------------------------------------hcCCC
Confidence 99985 443332 78999999999997544433 34477
Q ss_pred cceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccC------CCCC
Q 036984 401 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIV------LTTL 473 (603)
Q Consensus 401 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~------l~~L 473 (603)
+|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+ .+.. .+++
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence 8999999999999888878999999999999999999 788889999999999999999996555 4432 4788
Q ss_pred CceecccCcccc--cCCCcccccCCCCcccccCCc
Q 036984 474 AVFRVAYNNLSG--KIPDRVAQFSTFEEDSYEGNP 506 (603)
Q Consensus 474 ~~L~l~~N~l~~--~~p~~~~~l~~l~~~~l~gn~ 506 (603)
+.+++++|++.. ..|..+..+..++.+++++|.
T Consensus 296 ~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cceEeecCcccccccCccccccccceeEEEecccC
Confidence 899999999864 455667777888888888873
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.3e-30 Score=256.40 Aligned_cols=289 Identities=18% Similarity=0.244 Sum_probs=210.9
Q ss_pred CCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEc
Q 036984 82 SLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELIL 161 (603)
Q Consensus 82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l 161 (603)
+++.++++++.+.. +|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+. .+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEEC
Confidence 67777887777765 44444 25777777777777766666777777777777777777643333 5666666666666
Q ss_pred cCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccC
Q 036984 162 SNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSG 241 (603)
Q Consensus 162 ~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~ 241 (603)
++|.+.
T Consensus 110 ~~n~l~-------------------------------------------------------------------------- 115 (332)
T 2ft3_A 110 SKNHLV-------------------------------------------------------------------------- 115 (332)
T ss_dssp CSSCCC--------------------------------------------------------------------------
T ss_pred CCCcCC--------------------------------------------------------------------------
Confidence 666543
Q ss_pred CCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCC
Q 036984 242 EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANN 321 (603)
Q Consensus 242 ~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n 321 (603)
.+|.. + .++|++|++++|.+. .++...+..+++|+.|++++|.+.+.. ..+..+..+ +|++|++++|
T Consensus 116 ~l~~~---~--~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 116 EIPPN---L--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG------FEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp SCCSS---C--CTTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGG------SCTTSSCSC-CCSCCBCCSS
T ss_pred ccCcc---c--cccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCC------CCcccccCC-ccCEEECcCC
Confidence 12211 1 146667777777766 555555555777777777777664322 334555556 8999999999
Q ss_pred cCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhccc
Q 036984 322 YIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTS 401 (603)
Q Consensus 322 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 401 (603)
.+++ +|..+. ++|+.|++++|.+++..+. .+..+++
T Consensus 183 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~-----------------------------------------~l~~l~~ 218 (332)
T 2ft3_A 183 KLTG-IPKDLP--ETLNELHLDHNKIQAIELE-----------------------------------------DLLRYSK 218 (332)
T ss_dssp BCSS-CCSSSC--SSCSCCBCCSSCCCCCCTT-----------------------------------------SSTTCTT
T ss_pred CCCc-cCcccc--CCCCEEECCCCcCCccCHH-----------------------------------------HhcCCCC
Confidence 9986 444433 7899999999999854332 2344779
Q ss_pred ceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccC------CCCCC
Q 036984 402 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIV------LTTLA 474 (603)
Q Consensus 402 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~------l~~L~ 474 (603)
|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+ .+.. .++|+
T Consensus 219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS
T ss_pred CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccccc
Confidence 999999999999888888999999999999999999 788889999999999999999996655 4443 46799
Q ss_pred ceecccCccc--ccCCCcccccCCCCcccccCCc
Q 036984 475 VFRVAYNNLS--GKIPDRVAQFSTFEEDSYEGNP 506 (603)
Q Consensus 475 ~L~l~~N~l~--~~~p~~~~~l~~l~~~~l~gn~ 506 (603)
.|++++|++. +..|..+..++.++.+++++|.
T Consensus 298 ~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ceEeecCcccccccCcccccccchhhhhhccccc
Confidence 9999999998 5677778889999999999875
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.6e-34 Score=300.68 Aligned_cols=159 Identities=21% Similarity=0.238 Sum_probs=73.2
Q ss_pred CCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCC--CCccccCCCCCCCEEEccCCcCCCCccCccc--C
Q 036984 5 KNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNT--ILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ--T 80 (603)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~ 80 (603)
++|++|+++++.+.... +..+. ..+++|++|++++|.++... ..+..+..+++|++|++++|.+.+.....+. +
T Consensus 3 ~~l~~L~Ls~~~l~~~~-~~~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR-WAELL-PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHH-HHHHH-HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchh-HHHHH-hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 34566666655543211 22222 22556666666666554211 1123445556666666666655543322221 2
Q ss_pred C----CCCEEEccCCCCCc----CCchhhcCCCCCcEEeccCCCCccCcCcc-----CCCCCCCCEEEcccCcCCccC--
Q 036984 81 T----SLQELNVASNKLTR----NFPLGLCELVLLRELYIDNNDLSGSLPLC-----LTNLTSLQVLDVSYNQLTESI-- 145 (603)
Q Consensus 81 ~----~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-----~~~l~~L~~L~L~~n~i~~~~-- 145 (603)
+ +|++|++++|.++. .++..+..+++|++|++++|.+++..+.. +...++|++|++++|.+++..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 2 45555665555553 22445555555555555555554322221 112344555555555554311
Q ss_pred --CcccccCCCCCcEEEccCcee
Q 036984 146 --SSSPLMLLTSIEELILSNNHF 166 (603)
Q Consensus 146 --~~~~~~~l~~L~~L~l~~n~~ 166 (603)
+. .+..+++|++|++++|.+
T Consensus 161 ~l~~-~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 161 PLAS-VLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHH-HHHHCTTCCEEECCSSBC
T ss_pred HHHH-HHhhCCCCCEEECcCCCc
Confidence 11 233344455555554443
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-33 Score=296.41 Aligned_cols=136 Identities=24% Similarity=0.218 Sum_probs=104.6
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCc----cCccc-CCCCCEEEccCCCCCcCCchhh-cCC
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSL----LGAWQ-TTSLQELNVASNKLTRNFPLGL-CEL 104 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~-~~~L~~L~Ls~n~l~~~~~~~~-~~l 104 (603)
+++|++||+++|+++... ....+..+++|++|++++|.+++.. +..+. +++|++|++++|.+.+..+..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHH-HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchh-HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 568999999999987532 2233778999999999999988543 33344 7999999999999876544433 345
Q ss_pred C----CCcEEeccCCCCcc----CcCccCCCCCCCCEEEcccCcCCccCCc----ccccCCCCCcEEEccCceee
Q 036984 105 V----LLRELYIDNNDLSG----SLPLCLTNLTSLQVLDVSYNQLTESISS----SPLMLLTSIEELILSNNHFQ 167 (603)
Q Consensus 105 ~----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~~l~~L~~L~l~~n~~~ 167 (603)
+ +|++|++++|.++. .++..+.++++|++|++++|.+++..+. ......++|++|++++|.++
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 5 69999999999984 4578899999999999999998743222 11233568999999999876
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=5.1e-30 Score=253.72 Aligned_cols=249 Identities=28% Similarity=0.446 Sum_probs=156.9
Q ss_pred CCCCEEEccCCCCCc--CCchhhcCCCCCcEEeccC-CCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCc
Q 036984 81 TSLQELNVASNKLTR--NFPLGLCELVLLRELYIDN-NDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIE 157 (603)
Q Consensus 81 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~ 157 (603)
.++++|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|. .+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCCCC
Confidence 567888888888877 6777888888888888884 777777788888888888888888888766665 667777777
Q ss_pred EEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCC
Q 036984 158 ELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHL 237 (603)
Q Consensus 158 ~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n 237 (603)
+|++++|.+.+ ..|..
T Consensus 129 ~L~Ls~N~l~~-------------------------------------------------~~p~~--------------- 144 (313)
T 1ogq_A 129 TLDFSYNALSG-------------------------------------------------TLPPS--------------- 144 (313)
T ss_dssp EEECCSSEEES-------------------------------------------------CCCGG---------------
T ss_pred EEeCCCCccCC-------------------------------------------------cCChH---------------
Confidence 77777766541 12223
Q ss_pred cccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCC-CCcEEecCCCCcccccCCcCcccCCccccCCCCCCEE
Q 036984 238 NLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLP-GLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYL 316 (603)
Q Consensus 238 ~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L 316 (603)
+..+++|++|++++|.+++.+|..+.. ++ +|+.|++++|.+. +.+|..+..++ |++|
T Consensus 145 ------------~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N~l~--------~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 145 ------------ISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLT--------GKIPPTFANLN-LAFV 202 (313)
T ss_dssp ------------GGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEE--------EECCGGGGGCC-CSEE
T ss_pred ------------HhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECcCCeee--------ccCChHHhCCc-ccEE
Confidence 334455555555555555445544443 32 4555444444332 23344444444 6666
Q ss_pred eccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhh
Q 036984 317 LLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETV 396 (603)
Q Consensus 317 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (603)
++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------------------------------------- 236 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD---------------------------------------------- 236 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB----------------------------------------------
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeee----------------------------------------------
Confidence 6666666666666666666666666666666432
Q ss_pred hhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCce
Q 036984 397 QILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVF 476 (603)
Q Consensus 397 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L 476 (603)
++. +..+++|++|++++|++++.+|..|.++++|++|++++|++++.+|....+++|+.+
T Consensus 237 -------------------~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l 296 (313)
T 1ogq_A 237 -------------------LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296 (313)
T ss_dssp -------------------GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred -------------------cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChH
Confidence 222 344556666666666666666666666666666666666666666654566666666
Q ss_pred ecccCc
Q 036984 477 RVAYNN 482 (603)
Q Consensus 477 ~l~~N~ 482 (603)
++++|+
T Consensus 297 ~l~~N~ 302 (313)
T 1ogq_A 297 AYANNK 302 (313)
T ss_dssp GTCSSS
T ss_pred HhcCCC
Confidence 666666
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.5e-28 Score=244.56 Aligned_cols=109 Identities=26% Similarity=0.246 Sum_probs=76.3
Q ss_pred CCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEE
Q 036984 56 QLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLD 135 (603)
Q Consensus 56 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 135 (603)
.|+.....+++++.++.+|... .++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCcccccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 4455556777777777776654 35777777777777776665777777777777777777766667777777777777
Q ss_pred cccCcCCccCCcccccCCCCCcEEEccCceee
Q 036984 136 VSYNQLTESISSSPLMLLTSIEELILSNNHFQ 167 (603)
Q Consensus 136 L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~ 167 (603)
+++|.++ .++...+..+++|++|++++|+++
T Consensus 107 Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~ 137 (353)
T 2z80_A 107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK 137 (353)
T ss_dssp CCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS
T ss_pred CCCCcCC-cCCHhHhCCCccCCEEECCCCCCc
Confidence 7777776 355534666677777777666543
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=8.7e-27 Score=242.35 Aligned_cols=250 Identities=21% Similarity=0.211 Sum_probs=176.5
Q ss_pred cEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEe
Q 036984 206 TSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLN 285 (603)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ 285 (603)
..++..+..++. +|..+. ++++.|++++|.+.+..+.. +..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 46 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~---~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 46 SKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNS---FKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp CEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTT---TSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHH---hhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 345555544432 333332 46777888888777665554 566778888888888877 55555566677888888
Q ss_pred cCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhccccccccc
Q 036984 286 LSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYY 365 (603)
Q Consensus 286 L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 365 (603)
+++|.+..+. +..+..+++|++|++++|.+....+..|..+++|+.|++++|+..+.++
T Consensus 119 L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------------- 177 (440)
T 3zyj_A 119 LFDNRLTTIP--------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS------------- 177 (440)
T ss_dssp CCSSCCSSCC--------TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-------------
T ss_pred CCCCcCCeeC--------HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-------------
Confidence 7777765433 3345567788888888888877777777788888888888754432222
Q ss_pred CCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCc
Q 036984 366 DAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFS 445 (603)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 445 (603)
...+..+++|+.|++++|.++ .+| .+..+++|++|+|++|++++..|..|.
T Consensus 178 ---------------------------~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 228 (440)
T 3zyj_A 178 ---------------------------EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228 (440)
T ss_dssp ---------------------------TTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred ---------------------------cchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhc
Confidence 123445677888888888887 444 367778888888888888877777888
Q ss_pred CCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984 446 NLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 446 ~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~ 512 (603)
++++|++|++++|++++..+ .+..+++|+.|++++|++++..+..+..++.++.+++++|||.|+|.
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 88888888888888886666 67778888888888888887666777777888888888888888553
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5.1e-27 Score=231.98 Aligned_cols=249 Identities=18% Similarity=0.168 Sum_probs=187.8
Q ss_pred cEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccc--cCChhhhhcCCCCcE
Q 036984 206 TSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQG--HIPVEIGTYLPGLMH 283 (603)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~--~~~~~~~~~l~~L~~ 283 (603)
+.++.+++.++. +|..+ .++++.|++++|.+....+.. +..+++|++|++++|.+.. ..+..... +++|++
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~ 82 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGV---FDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKY 82 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTT---TTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCE
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhH---hhccccCCEEECCCCccCcccCccccccc-ccccCE
Confidence 456666665543 23322 257888888888887433333 5678888888888888762 12444444 788888
Q ss_pred EecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCC-ccccCCCCCCEEecCCCcCccCCChhhhcccccc
Q 036984 284 LNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSE 362 (603)
Q Consensus 284 L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 362 (603)
|++++|.+.. +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+.
T Consensus 83 L~Ls~n~i~~---------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------- 144 (306)
T 2z66_A 83 LDLSFNGVIT---------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG--------- 144 (306)
T ss_dssp EECCSCSEEE---------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT---------
T ss_pred EECCCCcccc---------ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh---------
Confidence 8888887753 34556778888899998888886654 5788888899999988888754432
Q ss_pred cccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcc-cCchhccCcCcCCEEecccccccccCC
Q 036984 363 GYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG-EIPTQIGYLTRIRALNLSHNNLTGTIP 441 (603)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 441 (603)
.+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|
T Consensus 145 --------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 192 (306)
T 2z66_A 145 --------------------------------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192 (306)
T ss_dssp --------------------------------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred --------------------------------hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH
Confidence 23346788889999888876 467788888889999999999888778
Q ss_pred cCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccC-CCCcccccCCcCCCCC
Q 036984 442 ITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFS-TFEEDSYEGNPFLYGQ 511 (603)
Q Consensus 442 ~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~l~~~~l~gn~~~c~~ 511 (603)
..|.++++|++|++++|++++..+ .+..+++|++|++++|++++..|..+..++ .++.+++++|++.|.+
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 888888899999999998886666 677888899999999999888888888874 7888899999988843
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.7e-26 Score=241.07 Aligned_cols=232 Identities=20% Similarity=0.187 Sum_probs=144.6
Q ss_pred CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcc
Q 036984 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW 306 (603)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~ 306 (603)
++++.|++++|.+.+..+.. +..+++|+.|++++|.+. .++...+..+++|++|++++|.+..+. +..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~---~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~ 142 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADT---FRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIP--------SGA 142 (452)
T ss_dssp TTCSEEECCSSCCCEECTTT---TTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCC--------TTT
T ss_pred CCccEEECcCCcCceECHHH---cCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccC--------hhh
Confidence 45666666666666555554 455666666666666666 344444444666666666666554332 333
Q ss_pred ccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecC
Q 036984 307 IDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPN 386 (603)
Q Consensus 307 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (603)
++.+++|++|++++|.++...+..|..+++|+.|++++|...+.++
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---------------------------------- 188 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS---------------------------------- 188 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC----------------------------------
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC----------------------------------
Confidence 4456667777777776665555566666777777776644332221
Q ss_pred CCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-
Q 036984 387 GSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP- 465 (603)
Q Consensus 387 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~- 465 (603)
...+..+++|+.|++++|++++. | .+..+++|++|+|++|.+++..|..|.++++|+.|++++|++++..+
T Consensus 189 ------~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (452)
T 3zyi_A 189 ------EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260 (452)
T ss_dssp ------TTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred ------hhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence 12234456677777777776633 3 35666677777777777776666667777777777777777766555
Q ss_pred CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984 466 QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 466 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~ 512 (603)
.+..+++|+.|++++|++++..+..+..++.++.+++++|||.|+|.
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 56667777777777777776555666666777777777777777544
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.5e-30 Score=277.67 Aligned_cols=381 Identities=15% Similarity=0.130 Sum_probs=225.1
Q ss_pred CCCCCCEEEccCCcCCCCccCccc--CCC-CCEEEccCCC-CCc-CCchhhcCCCCCcEEeccCCCCccC----cCccCC
Q 036984 56 QLVHLQELYIRDNDLRDSLLGAWQ--TTS-LQELNVASNK-LTR-NFPLGLCELVLLRELYIDNNDLSGS----LPLCLT 126 (603)
Q Consensus 56 ~l~~L~~L~Ls~n~i~~~~~~~~~--~~~-L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~ 126 (603)
.+++|++|+|++|.+++.....+. +++ |++|++++|. +.. ..+....++++|++|+|++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 455555555555544433333332 222 5555555553 110 0111122445555555555554332 111223
Q ss_pred CCCCCCEEEcccCcCC----ccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeecccee---eeccCCCCC
Q 036984 127 NLTSLQVLDVSYNQLT----ESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYL---ETESHYNSL 199 (603)
Q Consensus 127 ~l~~L~~L~L~~n~i~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~---~~~~~~~~~ 199 (603)
++++|++|++++|.+. +.++. .+..+++|++|++++|.+.... ..+.++++|+.++..... ........+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILELV--GFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGGGH--HHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHHHH--HHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 4455555555555543 11111 2334455555555555443211 223333344433333100 011222334
Q ss_pred CCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCC
Q 036984 200 TPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLP 279 (603)
Q Consensus 200 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~ 279 (603)
....+|+.++++++. ...++..+..+++|+.|++++|.+++..... .+..+++|+.|+++ +.+.+.....+...++
T Consensus 267 ~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~--~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCT--LIQKCPNLEVLETR-NVIGDRGLEVLAQYCK 342 (592)
T ss_dssp CCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHH--HHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT
T ss_pred hccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHH--HHHhCcCCCEEecc-CccCHHHHHHHHHhCC
Confidence 455688888888753 3457778888999999999999865432211 14578999999999 4444333344555689
Q ss_pred CCcEEecCC-----------CCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccC-CCCCCEEecC----
Q 036984 280 GLMHLNLSR-----------NAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ-LKEVRLIDLS---- 343 (603)
Q Consensus 280 ~L~~L~L~~-----------n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls---- 343 (603)
+|++|++++ +.+.+. .++.....+++|++|+++.|.+++..+..+.. +++|+.|+++
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~-------~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQR-------GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHH-------HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred CCCEEEeecCccccccccccCccCHH-------HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 999999983 233211 12223445899999999999998776666655 8999999996
Q ss_pred CCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCC--CcccCchhcc
Q 036984 344 HNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNK--LTGEIPTQIG 421 (603)
Q Consensus 344 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~l~ 421 (603)
.|.+++...+ ......+..+++|+.|++++|. +++..+..+.
T Consensus 416 ~n~l~~~p~~------------------------------------~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 416 EERITDLPLD------------------------------------NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp CSCCSSCCCH------------------------------------HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred CccccCchHH------------------------------------HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence 5556531100 0011234568899999998654 6665555554
Q ss_pred -CcCcCCEEeccccccccc-CCcCCcCCCCCCEEeCCCCcCccc-CC-CccCCCCCCceecccCccccc
Q 036984 422 -YLTRIRALNLSHNNLTGT-IPITFSNLKQIESLDLSYNLLHGK-IP-QLIVLTTLAVFRVAYNNLSGK 486 (603)
Q Consensus 422 -~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~-~~-~~~~l~~L~~L~l~~N~l~~~ 486 (603)
.+++|++|+|++|.+++. .+..+.++++|++|++++|++++. ++ ....+++|++|++++|+++..
T Consensus 460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 488999999999999863 344567889999999999998754 33 345689999999999998754
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=237.88 Aligned_cols=204 Identities=19% Similarity=0.154 Sum_probs=152.4
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE 109 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (603)
|+.....+++++.++. .|..+. ++|++|++++|.++++++..+. +++|++|++++|.+++..+..|.++++|++
T Consensus 30 C~~~~~c~~~~~~l~~---iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS---IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp ECTTSEEECCSTTCSS---CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCeEeeCCCCCccc---cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 6777788999988875 233332 5899999999999999887887 999999999999999988888999999999
Q ss_pred EeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCc-ccccCCCCCcEEEccCce-eeeecCccccCCCCCCceeecc
Q 036984 110 LYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISS-SPLMLLTSIEELILSNNH-FQIPISLEPLSNLSKLKAFNGE 187 (603)
Q Consensus 110 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~~l~~~ 187 (603)
|++++|.+++..+..|+++++|++|++++|.++ .++. ..+..+++|++|++++|. +. ...
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~---------------- 166 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT-KIQ---------------- 166 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC-EEC----------------
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcccc-ccC----------------
Confidence 999999999766666999999999999999998 4555 578889999999999884 32 111
Q ss_pred ceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccc
Q 036984 188 IYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQ 267 (603)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~ 267 (603)
+..+..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus 167 --------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 167 --------------------------------RKDFAGLTFLEELEIDASDLQSYEPKS---LKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp --------------------------------TTTTTTCCEEEEEEEEETTCCEECTTT---TTTCSEEEEEEEECSCST
T ss_pred --------------------------------HHHccCCCCCCEEECCCCCcCccCHHH---HhccccCCeecCCCCccc
Confidence 223344455566666666665555554 455666777777777665
Q ss_pred ccCChhhhhcCCCCcEEecCCCCccc
Q 036984 268 GHIPVEIGTYLPGLMHLNLSRNAFND 293 (603)
Q Consensus 268 ~~~~~~~~~~l~~L~~L~L~~n~l~~ 293 (603)
.+|...+..+++|+.|++++|.+.+
T Consensus 212 -~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 212 -LLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp -THHHHHHHHTTTEEEEEEESCBCTT
T ss_pred -cchhhhhhhcccccEEECCCCcccc
Confidence 5555555556666666666665543
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=7.9e-27 Score=230.61 Aligned_cols=248 Identities=19% Similarity=0.209 Sum_probs=146.8
Q ss_pred cEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcC--CchhhcCCCCCcEEe
Q 036984 35 RLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRN--FPLGLCELVLLRELY 111 (603)
Q Consensus 35 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~ 111 (603)
+.++.+++.++.. +..+ .++|++|++++|.++.++...|. +++|++|++++|.+... .+..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~~i---p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSV---PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSC---CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccC---CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 3556666555431 2222 24666666666666666666555 66666666666666532 144555566666666
Q ss_pred ccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceee
Q 036984 112 IDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLE 191 (603)
Q Consensus 112 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~ 191 (603)
+++|.++ .+|..+.++++|++|++++|.+++..+...+..+++|++|++++|.+.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------------------------ 139 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR------------------------ 139 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE------------------------
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC------------------------
Confidence 6666665 344456666666666666666653222124555555555555555443
Q ss_pred eccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccC-CCCCCCccccccCCccEEEccCccccccC
Q 036984 192 TESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSG-EFPNWLMPIHCLQKLATLDVSNNFFQGHI 270 (603)
Q Consensus 192 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 270 (603)
+..+..+..+++|+.|++++|.+.+ ..|.. +..+++|++|++++|.+.+ +
T Consensus 140 -------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~Ls~n~l~~-~ 190 (306)
T 2z66_A 140 -------------------------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQ-L 190 (306)
T ss_dssp -------------------------ECSTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTTSCCCE-E
T ss_pred -------------------------ccchhhcccCcCCCEEECCCCccccccchhH---HhhCcCCCEEECCCCCcCC-c
Confidence 2333445556667777777777664 34544 4566777777777777763 3
Q ss_pred ChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCC-CCCEEecCCCcCcc
Q 036984 271 PVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLK-EVRLIDLSHNNLSG 349 (603)
Q Consensus 271 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~ 349 (603)
+...+..+++|+.|++++|.+.++. +..+..+++|++|++++|.+++..+..+..++ +|++|++++|++++
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFSLD--------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCC--------SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CHHHhcCCCCCCEEECCCCccCccC--------hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 3333334667777777766655432 23445567777777777777776666666663 67777777777753
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.7e-26 Score=224.30 Aligned_cols=225 Identities=20% Similarity=0.174 Sum_probs=139.8
Q ss_pred CEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc
Q 036984 61 QELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140 (603)
Q Consensus 61 ~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 140 (603)
++++.+++.++.++... .++|++|++++|.+++..+..|..+++|++|++++|.+++..|.+|.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45566666555554432 4556666666666666555556666666666666666665555666666666666666665
Q ss_pred -CCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCc
Q 036984 141 -LTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTF 219 (603)
Q Consensus 141 -i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 219 (603)
+. .++...+..+++|++|++++|.+. +..
T Consensus 92 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~-------------------------------------------------~~~ 121 (285)
T 1ozn_A 92 QLR-SVDPATFHGLGRLHTLHLDRCGLQ-------------------------------------------------ELG 121 (285)
T ss_dssp TCC-CCCTTTTTTCTTCCEEECTTSCCC-------------------------------------------------CCC
T ss_pred Ccc-ccCHHHhcCCcCCCEEECCCCcCC-------------------------------------------------EEC
Confidence 44 332225555555555555555443 111
Q ss_pred ChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcC
Q 036984 220 PKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRL 299 (603)
Q Consensus 220 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 299 (603)
+..+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.++ .++...+..+++|+.|++++|.+.+
T Consensus 122 ~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~------ 191 (285)
T 1ozn_A 122 PGLFRGLAALQYLYLQDNALQALPDDT---FRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAH------ 191 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCE------
T ss_pred HhHhhCCcCCCEEECCCCcccccCHhH---hccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccc------
Confidence 233444455555555555555443333 455677777777777776 5555545557778887777776543
Q ss_pred cccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCcc
Q 036984 300 QGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSG 349 (603)
Q Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 349 (603)
..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 192 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 192 --VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp --ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred --cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 335566677888888888888887766778888888888888888864
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.3e-26 Score=226.86 Aligned_cols=223 Identities=18% Similarity=0.242 Sum_probs=148.6
Q ss_pred CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcc
Q 036984 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW 306 (603)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~ 306 (603)
+.++.|++++|.+. .+|.. +..+++|++|++++|.+. .+|..+.. +++|++|++++|.+. .+|..
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~---l~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~---------~lp~~ 145 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQ---AFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR---------ALPAS 145 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSC---GGGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC---------CCCGG
T ss_pred cceeEEEccCCCch-hcChh---hhhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc---------cCcHH
Confidence 45666666666665 44443 445666666666666666 56654443 666666666665543 33555
Q ss_pred ccCCCCCCEEeccCCcCcccCCcccc---------CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCC
Q 036984 307 IDRLPQISYLLLANNYIEGEIPAQLC---------QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASA 377 (603)
Q Consensus 307 l~~l~~L~~L~L~~n~l~~~~~~~~~---------~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (603)
++.+++|++|++++|.+.+.+|..+. .+++|++|++++|+++ .+|..+
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l---------------------- 202 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI---------------------- 202 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG----------------------
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh----------------------
Confidence 66666677777766666556655543 3777777777777775 444322
Q ss_pred CCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCC
Q 036984 378 PALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSY 457 (603)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 457 (603)
..+++|+.|++++|.+++ +|..+..+++|++|++++|.+.+.+|..|.++++|++|++++
T Consensus 203 -------------------~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 203 -------------------ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp -------------------GGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred -------------------cCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 335677777777777773 445677777777777777777777777777777777777777
Q ss_pred CcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcC
Q 036984 458 NLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF 507 (603)
Q Consensus 458 N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~ 507 (603)
|.+.+.+| .+..+++|++|++++|++.+.+|..++.++.++.+.+..|..
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 77777777 677777777777777777777777777777777776665543
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=7.6e-26 Score=235.26 Aligned_cols=247 Identities=20% Similarity=0.164 Sum_probs=162.7
Q ss_pred CcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEec
Q 036984 34 LRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYI 112 (603)
Q Consensus 34 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (603)
.+.++.++..++. .|..+. ++++.|+|++|.++.+++..|. +++|++|++++|.+....+..|.++++|++|+|
T Consensus 45 ~~~v~c~~~~l~~---iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLRE---VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCSS---CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcCc---CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4566666666553 222222 5677777777777777777666 777777777777777766677777777777777
Q ss_pred cCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeee
Q 036984 113 DNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLET 192 (603)
Q Consensus 113 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~ 192 (603)
++|+++...+..|.++++|++|++++|.+. .++...|..+++|++|++++|......+...+.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~---------------- 182 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE---------------- 182 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTT----------------
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhh----------------
Confidence 777777666666777777777777777776 344446777777777777764332222222222
Q ss_pred ccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCCh
Q 036984 193 ESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPV 272 (603)
Q Consensus 193 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~ 272 (603)
.+.+|+.|++++|.+... | .+..+++|+.|++++|.+.+..|.. +..+++|+.|++++|.+. .++.
T Consensus 183 --------~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~L~~n~l~-~~~~ 248 (440)
T 3zyj_A 183 --------GLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGS---FQGLMHLQKLWMIQSQIQ-VIER 248 (440)
T ss_dssp --------TCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTT---TTTCTTCCEEECTTCCCC-EECT
T ss_pred --------cccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhh---hccCccCCEEECCCCcee-EECh
Confidence 223566666666665532 2 3566777777788777777666655 566777888888888777 4444
Q ss_pred hhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCc
Q 036984 273 EIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIE 324 (603)
Q Consensus 273 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (603)
..+..+++|+.|+|++|.+..+. +..+..+++|+.|++++|.+.
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLP--------HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCC--------TTTTSSCTTCCEEECCSSCEE
T ss_pred hhhcCCCCCCEEECCCCCCCccC--------hhHhccccCCCEEEcCCCCcc
Confidence 55555778888777777665443 334555778888888888775
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=7.4e-26 Score=236.22 Aligned_cols=247 Identities=20% Similarity=0.154 Sum_probs=149.3
Q ss_pred CcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEec
Q 036984 34 LRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYI 112 (603)
Q Consensus 34 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (603)
.+.++.++..++. .+..+ .+++++|+|++|.++.+++..|. +++|++|++++|.+.+..+..|.++++|++|+|
T Consensus 56 ~~~v~c~~~~l~~---iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLSE---VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCSS---CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcCc---cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 3456666555543 22222 25667777777777766666666 677777777777776666666677777777777
Q ss_pred cCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeee
Q 036984 113 DNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLET 192 (603)
Q Consensus 113 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~ 192 (603)
++|.++...+..|.++++|++|++++|.+. .++...|..+++|++|++++|......+...+.
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~---------------- 193 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE---------------- 193 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTT----------------
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhcc----------------
Confidence 777776655556666777777777777766 344446666777777777664322222221222
Q ss_pred ccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCCh
Q 036984 193 ESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPV 272 (603)
Q Consensus 193 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~ 272 (603)
.+.+|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|.. +..+++|+.|++++|.+. .++.
T Consensus 194 --------~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~L~~n~l~-~~~~ 259 (452)
T 3zyi_A 194 --------GLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGS---FHGLSSLKKLWVMNSQVS-LIER 259 (452)
T ss_dssp --------TCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGG---GTTCTTCCEEECTTSCCC-EECT
T ss_pred --------CCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCccc---ccCccCCCEEEeCCCcCc-eECH
Confidence 223555555666555432 23556666777777777776655554 556677777777777776 3433
Q ss_pred hhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCc
Q 036984 273 EIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIE 324 (603)
Q Consensus 273 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (603)
..+..+++|+.|++++|.+..+. +..+..+++|+.|++++|.+.
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLP--------HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCC--------TTSSTTCTTCCEEECCSSCEE
T ss_pred HHhcCCCCCCEEECCCCcCCccC--------hHHhccccCCCEEEccCCCcC
Confidence 44445677777777766655433 334455677777777777664
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9.6e-26 Score=220.34 Aligned_cols=206 Identities=19% Similarity=0.181 Sum_probs=107.2
Q ss_pred CCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCc-CcccCCcccc
Q 036984 254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNY-IEGEIPAQLC 332 (603)
Q Consensus 254 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~ 332 (603)
++|++|++++|.+. .++...+..+++|++|++++|.+..+ .|..+..+++|++|++++|. +....+..+.
T Consensus 32 ~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARI--------DAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCcccee--------CHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 45555555555554 33333333355555555555544322 23344445555555555554 4444455555
Q ss_pred CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCC
Q 036984 333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKL 412 (603)
Q Consensus 333 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 412 (603)
.+++|++|++++|++++..|. .+..+++|++|++++|.+
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~-----------------------------------------~~~~l~~L~~L~l~~n~l 141 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPG-----------------------------------------LFRGLAALQYLYLQDNAL 141 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTT-----------------------------------------TTTTCTTCCEEECCSSCC
T ss_pred CCcCCCEEECCCCcCCEECHh-----------------------------------------HhhCCcCCCEEECCCCcc
Confidence 555555555555555432221 122344555555555555
Q ss_pred cccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcc
Q 036984 413 TGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRV 491 (603)
Q Consensus 413 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~ 491 (603)
++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++++..| .+..+++|+.|++++|++++..+..+
T Consensus 142 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 221 (285)
T 1ozn_A 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc
Confidence 54444445555555555555555554444445555555555555555555444 45555555555555555554444445
Q ss_pred cccCCCCcccccCCcCCC
Q 036984 492 AQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 492 ~~l~~l~~~~l~gn~~~c 509 (603)
..++.++.+++++||+.|
T Consensus 222 ~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 222 APLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTCTTCCEEECCSSCEEC
T ss_pred ccCcccCEEeccCCCccC
Confidence 555555555566665555
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.8e-25 Score=222.39 Aligned_cols=235 Identities=22% Similarity=0.209 Sum_probs=149.9
Q ss_pred CCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEc
Q 036984 57 LVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDV 136 (603)
Q Consensus 57 l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 136 (603)
.+++++|++++|.++.++...+.+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 36677777777777766665555777777777777776 36666777777777777777776 55666777777777777
Q ss_pred ccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCC
Q 036984 137 SYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDD 216 (603)
Q Consensus 137 ~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (603)
++|.+.+.+|. .+.. ..+. ..+..+.+|+.|++++|.++
T Consensus 158 ~~n~~~~~~p~-~~~~------~~~~----------------------------------~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 158 RACPELTELPE-PLAS------TDAS----------------------------------GEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp EEETTCCCCCS-CSEE------EC-C----------------------------------CCEEESTTCCEEEEEEECCC
T ss_pred CCCCCccccCh-hHhh------ccch----------------------------------hhhccCCCCCEEECcCCCcC
Confidence 77666555554 2221 0000 00111124444444444444
Q ss_pred CCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccC
Q 036984 217 GTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSY 296 (603)
Q Consensus 217 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 296 (603)
.+|..+..+++|+.|++++|.+.+ +|.. +..+++|++|++++|.+.+.+|..+.. +++|+.|++++|.+.
T Consensus 197 -~lp~~l~~l~~L~~L~L~~N~l~~-l~~~---l~~l~~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~---- 266 (328)
T 4fcg_A 197 -SLPASIANLQNLKSLKIRNSPLSA-LGPA---IHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNL---- 266 (328)
T ss_dssp -CCCGGGGGCTTCCEEEEESSCCCC-CCGG---GGGCTTCCEEECTTCTTCCBCCCCTTC-CCCCCEEECTTCTTC----
T ss_pred -cchHhhcCCCCCCEEEccCCCCCc-Cchh---hccCCCCCEEECcCCcchhhhHHHhcC-CCCCCEEECCCCCch----
Confidence 445556666677777777777664 3332 566777777777777766666654443 677777777666543
Q ss_pred CcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCc
Q 036984 297 NRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS 348 (603)
Q Consensus 297 ~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 348 (603)
+.+|..++.+++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 267 ----~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 267 ----LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ----CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ----hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 355666777788888888888888788888888888888888777664
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.6e-24 Score=231.76 Aligned_cols=113 Identities=31% Similarity=0.324 Sum_probs=62.3
Q ss_pred CCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEe
Q 036984 32 ASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELY 111 (603)
Q Consensus 32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (603)
.+++.|++++|.++. ++..+. ++|++|++++|.++.++. .+++|++|++++|++++ +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~~---lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTT---LPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSC---CCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcCc---cChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 356777777776653 222222 566777777776666554 25666666666666655 333 455666666
Q ss_pred ccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCce
Q 036984 112 IDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNH 165 (603)
Q Consensus 112 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~ 165 (603)
+++|.+++ +|. .+++|+.|++++|.+++ +|. . +++|++|++++|.
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~-~---l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV-L---PPGLQELSVSDNQ 152 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC-C---CTTCCEEECCSSC
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC-C---CCCCCEEECcCCc
Confidence 66666653 222 34556666666665552 333 1 2445555555443
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.4e-24 Score=232.17 Aligned_cols=93 Identities=24% Similarity=0.263 Sum_probs=58.9
Q ss_pred CCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEccc
Q 036984 59 HLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY 138 (603)
Q Consensus 59 ~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 138 (603)
++++|++++|.++.++.... ++|++|++++|.++. +|. .+++|++|+|++|+++. +|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence 46777777777776665443 677777777777765 333 45677777777777763 333 556777777777
Q ss_pred CcCCccCCcccccCCCCCcEEEccCcee
Q 036984 139 NQLTESISSSPLMLLTSIEELILSNNHF 166 (603)
Q Consensus 139 n~i~~~~~~~~~~~l~~L~~L~l~~n~~ 166 (603)
|.+++ +|. .+++|++|++++|.+
T Consensus 111 N~l~~-l~~----~l~~L~~L~L~~N~l 133 (622)
T 3g06_A 111 NPLTH-LPA----LPSGLCKLWIFGNQL 133 (622)
T ss_dssp CCCCC-CCC----CCTTCCEEECCSSCC
T ss_pred CcCCC-CCC----CCCCcCEEECCCCCC
Confidence 76653 333 345566666666544
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-26 Score=228.27 Aligned_cols=215 Identities=24% Similarity=0.224 Sum_probs=116.3
Q ss_pred CCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEccc
Q 036984 60 LQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY 138 (603)
Q Consensus 60 L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 138 (603)
++..+++.+.+.......+. +++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +.++++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 34445555555544444444 5566666666666666555566666666666666666654332 56666666666666
Q ss_pred CcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCC
Q 036984 139 NQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGT 218 (603)
Q Consensus 139 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 218 (603)
|.+++ ++ ..++|++|++++|.+...
T Consensus 90 n~l~~-l~-----~~~~L~~L~l~~n~l~~~------------------------------------------------- 114 (317)
T 3o53_A 90 NYVQE-LL-----VGPSIETLHAANNNISRV------------------------------------------------- 114 (317)
T ss_dssp SEEEE-EE-----ECTTCCEEECCSSCCSEE-------------------------------------------------
T ss_pred Ccccc-cc-----CCCCcCEEECCCCccCCc-------------------------------------------------
Confidence 66542 22 225556666655554321
Q ss_pred cChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCc
Q 036984 219 FPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNR 298 (603)
Q Consensus 219 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 298 (603)
.+. .+++|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..++..+++|++|++++|.+.++..
T Consensus 115 ~~~---~~~~L~~L~l~~N~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-- 186 (317)
T 3o53_A 115 SCS---RGQGKKNIYLANNKITMLRDLD---EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-- 186 (317)
T ss_dssp EEC---CCSSCEEEECCSSCCCSGGGBC---TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--
T ss_pred Ccc---ccCCCCEEECCCCCCCCccchh---hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--
Confidence 111 1344566666666665544433 44566677777777766643344444345666666666665544311
Q ss_pred CcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCc
Q 036984 299 LQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLS 348 (603)
Q Consensus 299 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 348 (603)
...+++|++|++++|.+++..+ .+..+++|+.|++++|+++
T Consensus 187 --------~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 187 --------QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp --------CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC
T ss_pred --------ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc
Confidence 1124556666666665553322 3555555555555555554
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.1e-28 Score=265.41 Aligned_cols=227 Identities=14% Similarity=0.047 Sum_probs=147.0
Q ss_pred cChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcc-cccCC
Q 036984 219 FPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFN-DLSYN 297 (603)
Q Consensus 219 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 297 (603)
++..+..+++|+.|++++|.+++..... .+..+++|+.|++++| +.+.....+...+++|++|+++++.-. ..+.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~--~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVK--LLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHH--HHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHH--HHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence 4555567888999999998865322111 0346789999999988 442222334445889999988543100 01112
Q ss_pred cCcccCCccc-cCCCCCCEEeccCCcCcccCCcccc-CCCCCCEEecC--C----CcCccCCChhhhcccccccccCCCC
Q 036984 298 RLQGSIPNWI-DRLPQISYLLLANNYIEGEIPAQLC-QLKEVRLIDLS--H----NNLSGHIPFCLVNTALSEGYYDAVA 369 (603)
Q Consensus 298 ~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~~~~~~~~~~~~~~~~~~~~~ 369 (603)
.+++.....+ ..+++|++|.+..|.+++.....+. .+++|+.|+++ + +.++. .|..
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~--------------- 421 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLD--------------- 421 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTH---------------
T ss_pred CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC-Cchh---------------
Confidence 2221111112 2378899998888888766555554 57899999998 3 33431 1100
Q ss_pred CCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccC-cCcCCEEecccccccccCCcCC-cCC
Q 036984 370 PTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGY-LTRIRALNLSHNNLTGTIPITF-SNL 447 (603)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l 447 (603)
......+..+++|+.|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ .++
T Consensus 422 --------------------~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 480 (594)
T 2p1m_B 422 --------------------IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480 (594)
T ss_dssp --------------------HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred --------------------hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence 00112245678999999977 777665555655 7899999999999876555444 568
Q ss_pred CCCCEEeCCCCcCcccCC--CccCCCCCCceecccCcccc
Q 036984 448 KQIESLDLSYNLLHGKIP--QLIVLTTLAVFRVAYNNLSG 485 (603)
Q Consensus 448 ~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~ 485 (603)
++|++|++++|++++... ....+++|+.|++++|+++.
T Consensus 481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 899999999999865433 34458899999999998853
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.4e-26 Score=236.65 Aligned_cols=246 Identities=21% Similarity=0.176 Sum_probs=199.4
Q ss_pred CcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCC
Q 036984 201 PKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPG 280 (603)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~ 280 (603)
..++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..| +..+++|++|++++|.++ .+|. .++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~l~-~l~~-----~~~ 100 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNNYVQ-ELLV-----GPS 100 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-----CTTCTTCCEEECCSSEEE-EEEE-----CTT
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-----cccCCCCCEEEecCCcCC-CCCC-----CCC
Confidence 34489999999999998888899999999999999999886554 567899999999999998 4442 479
Q ss_pred CcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccc
Q 036984 281 LMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTAL 360 (603)
Q Consensus 281 L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 360 (603)
|+.|++++|.+..+.. ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+.
T Consensus 101 L~~L~L~~N~l~~~~~-----------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---- 165 (487)
T 3oja_A 101 IETLHAANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA---- 165 (487)
T ss_dssp CCEEECCSSCCCCEEE-----------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG----
T ss_pred cCEEECcCCcCCCCCc-----------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh----
Confidence 9999999988765431 2357899999999999988888899999999999999999865553332
Q ss_pred cccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccC
Q 036984 361 SEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI 440 (603)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 440 (603)
..+++|+.|+|++|.+++..+ ...+++|+.|+|++|.+++..
T Consensus 166 ------------------------------------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 166 ------------------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp ------------------------------------GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC
T ss_pred ------------------------------------hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC
Confidence 246789999999999986633 446899999999999999654
Q ss_pred CcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCccc-ccCCCcccccCCCCccccc-------CCcCCCCC
Q 036984 441 PITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS-GKIPDRVAQFSTFEEDSYE-------GNPFLYGQ 511 (603)
Q Consensus 441 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~l~~l~~~~l~-------gn~~~c~~ 511 (603)
| .+..+++|+.|++++|.+++.++.+..+++|+.|++++|++. +.+|..+..++.+..+.+. +|++.|.+
T Consensus 208 ~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~ 285 (487)
T 3oja_A 208 P-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285 (487)
T ss_dssp G-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSS
T ss_pred H-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccC
Confidence 4 488899999999999999964447888999999999999998 5666767777777777665 77777743
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=4.2e-27 Score=255.02 Aligned_cols=395 Identities=11% Similarity=0.031 Sum_probs=257.5
Q ss_pred CCCCCceecccccccccccchHHHHHHhcCC-CcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccC----c
Q 036984 3 EFKNLEHLVMDQMLVEVNTSFLQIVSELMAS-LRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLG----A 77 (603)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~ 77 (603)
.+++|++|+|+++.+. +..... ....++. |++|+|++|.............++++|++|+|++|.+++.... .
T Consensus 110 ~~~~L~~L~L~~~~i~-~~~~~~-l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVS-DLDLDR-LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCBCC-HHHHHH-HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred hCCCCCeEEeeccEec-HHHHHH-HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 5899999999998543 222222 2232445 9999999986211111122334789999999999988765432 2
Q ss_pred cc-CCCCCEEEccCCCCCc----CCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCC---ccCCccc
Q 036984 78 WQ-TTSLQELNVASNKLTR----NFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLT---ESISSSP 149 (603)
Q Consensus 78 ~~-~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~ 149 (603)
.. +++|++|++++|.+++ ..+..+.++++|++|++++|.+.+ ++..+.++++|+.|++++.... ..... .
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~ 265 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYM-N 265 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSS-C
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHH-H
Confidence 33 8999999999999873 334456788999999999999885 6688899999999999864322 12222 5
Q ss_pred ccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcC-hhhccCCC
Q 036984 150 LMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFP-KFLYHQHD 228 (603)
Q Consensus 150 ~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~ 228 (603)
+..+++|+.|+++++... ... ..+...++|++|++++|.+++... ..+..+++
T Consensus 266 l~~~~~L~~L~l~~~~~~---~l~-----------------------~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN---EMP-----------------------ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp CCCCTTCCEEEETTCCTT---TGG-----------------------GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhccccccccCccccchh---HHH-----------------------HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 677889999998875221 000 011233478888888888654333 44678888
Q ss_pred CCEEEcCCCcccCC-CCCCCccccccCCccEEEccC-----------ccccccCChhhhhcCCCCcEEecCCCCcccccC
Q 036984 229 LKNADLSHLNLSGE-FPNWLMPIHCLQKLATLDVSN-----------NFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSY 296 (603)
Q Consensus 229 L~~L~L~~n~i~~~-~~~~~~~~~~l~~L~~L~Ls~-----------n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 296 (603)
|+.|+++ +.+... ++.. ...+++|++|++++ +.+++.....+...+++|++|+++.|.+.+
T Consensus 320 L~~L~L~-~~~~~~~l~~~---~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~--- 392 (592)
T 3ogk_B 320 LEVLETR-NVIGDRGLEVL---AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN--- 392 (592)
T ss_dssp CCEEEEE-GGGHHHHHHHH---HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH---
T ss_pred CCEEecc-CccCHHHHHHH---HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH---
Confidence 9999888 333321 2211 24578899999983 455533233344558889998886555432
Q ss_pred CcCcccCCccccC-CCCCCEEecc----CCcCccc-----CCccccCCCCCCEEecCCCc--CccCCChhhhcccccccc
Q 036984 297 NRLQGSIPNWIDR-LPQISYLLLA----NNYIEGE-----IPAQLCQLKEVRLIDLSHNN--LSGHIPFCLVNTALSEGY 364 (603)
Q Consensus 297 ~~~~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~~ 364 (603)
..+..+.. +++|++|+++ .|.+++. ++..+.++++|+.|++++|. +++..+.
T Consensus 393 -----~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~----------- 456 (592)
T 3ogk_B 393 -----ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS----------- 456 (592)
T ss_dssp -----HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH-----------
T ss_pred -----HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH-----------
Confidence 22333333 7888899886 5677653 23335668889999997644 4422111
Q ss_pred cCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCccc-CchhccCcCcCCEEeccccccccc-CCc
Q 036984 365 YDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE-IPTQIGYLTRIRALNLSHNNLTGT-IPI 442 (603)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~-~~~ 442 (603)
.....+++|+.|++++|++++. ++..+..+++|++|+|++|.+++. ++.
T Consensus 457 -----------------------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 457 -----------------------------YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp -----------------------------HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred -----------------------------HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 1223367888999999888753 344557788899999999988754 333
Q ss_pred CCcCCCCCCEEeCCCCcCcccCC-Cc-cCCCCCCceecc
Q 036984 443 TFSNLKQIESLDLSYNLLHGKIP-QL-IVLTTLAVFRVA 479 (603)
Q Consensus 443 ~~~~l~~L~~L~Ls~N~l~~~~~-~~-~~l~~L~~L~l~ 479 (603)
.+..+++|++|++++|++++... .+ ..++.+....+.
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred HHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 34567889999999998875422 22 235555444333
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=4.9e-24 Score=206.23 Aligned_cols=203 Identities=21% Similarity=0.262 Sum_probs=119.0
Q ss_pred CccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCC
Q 036984 255 KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQL 334 (603)
Q Consensus 255 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 334 (603)
..+.++++++.++ .+|..+. ++++.|++++|.+..+. +..+..+++|++|++++|.++...+..|..+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLP--------SKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCC--------TTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeC--------HHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence 4555566655555 4554332 35566655555544322 2334445666666666666665555555666
Q ss_pred CCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcc
Q 036984 335 KEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG 414 (603)
Q Consensus 335 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 414 (603)
++|++|++++|++++..+ ..+..+++|+.|++++|.+++
T Consensus 85 ~~L~~L~l~~n~l~~~~~-----------------------------------------~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPI-----------------------------------------GVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp TTCCEEECCSSCCCCCCT-----------------------------------------TTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCCcCCH-----------------------------------------hHcccccCCCEEECCCCccCe
Confidence 666666666666652211 122335566666666666665
Q ss_pred cCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccc
Q 036984 415 EIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQ 493 (603)
Q Consensus 415 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 493 (603)
..+..+..+++|++|+|++|.+++..+..|.++++|++|++++|++++..+ .+..+++|++|++++|++++..+..+..
T Consensus 124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 555556666666666666666665555556666666666666666665444 4556666666666666666555555566
Q ss_pred cCCCCcccccCCcCCCC
Q 036984 494 FSTFEEDSYEGNPFLYG 510 (603)
Q Consensus 494 l~~l~~~~l~gn~~~c~ 510 (603)
++.++.+++++|||.|.
T Consensus 204 l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 204 LEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTCCEEECCSSCBCCS
T ss_pred ccCCCEEEecCCCeeCC
Confidence 66666677777777663
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.5e-26 Score=228.87 Aligned_cols=251 Identities=21% Similarity=0.278 Sum_probs=172.3
Q ss_pred cccEEeccCCCCCCCcChhhccCCCCCEEEcCCCccc-CCCCCCCc----cccccCCccEEEccCccccccCChhhh-hc
Q 036984 204 QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLS-GEFPNWLM----PIHCLQKLATLDVSNNFFQGHIPVEIG-TY 277 (603)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~----~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~~ 277 (603)
+|+.+++++|.+ .+|..+... |+.|++++|.+. ..+|.... ....+++|++|++++|.+++.+|..++ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 677777777777 556655544 777788887773 23333200 011467888888888888777776653 55
Q ss_pred CCCCcEEecCCCCcccccCCcCcccCCccccCC-----CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCC
Q 036984 278 LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRL-----PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIP 352 (603)
Q Consensus 278 l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 352 (603)
+++|++|++++|.+..+ |..++.+ ++|++|++++|++.+..+..+..+++|++|++++|++.+.++
T Consensus 120 l~~L~~L~Ls~N~l~~~---------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR---------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp SCCCSEEEEESCBCSSS---------SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred CCCccEEEccCCCCcch---------hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 77888888777766533 3334433 788888888888887777888888888888888888764311
Q ss_pred hhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCccc---CchhccCcCcCCEE
Q 036984 353 FCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE---IPTQIGYLTRIRAL 429 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L 429 (603)
.. ....+..+++|++|++++|.+++. ....+..+++|++|
T Consensus 191 ~~-------------------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 191 LI-------------------------------------SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp HH-------------------------------------HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred HH-------------------------------------HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence 00 000113467888888888888732 22334567888888
Q ss_pred ecccccccccCC-cCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcC
Q 036984 430 NLSHNNLTGTIP-ITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF 507 (603)
Q Consensus 430 ~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~ 507 (603)
++++|++++..| ..+..+++|++|++++|+++ .+| .+. ++|++|++++|++++. |. +..++.++.+++++|++
T Consensus 234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred ECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence 888888887664 45666788888888888888 556 443 7888888888888865 66 77888888888888876
Q ss_pred CC
Q 036984 508 LY 509 (603)
Q Consensus 508 ~c 509 (603)
..
T Consensus 309 ~~ 310 (312)
T 1wwl_A 309 LD 310 (312)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=9.9e-26 Score=223.55 Aligned_cols=244 Identities=21% Similarity=0.182 Sum_probs=197.9
Q ss_pred cccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCC
Q 036984 202 KFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGL 281 (603)
Q Consensus 202 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L 281 (603)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++ .++. .++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~n~l~-~l~~-----~~~L 101 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNNYVQ-ELLV-----GPSI 101 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-----ETTCTTCCEEECCSSEEE-EEEE-----CTTC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-----hhhcCCCCEEECcCCccc-cccC-----CCCc
Confidence 3489999999999998888899999999999999999876543 677899999999999998 4442 4799
Q ss_pred cEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhccccc
Q 036984 282 MHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALS 361 (603)
Q Consensus 282 ~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 361 (603)
++|++++|.+..+.. ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus 102 ~~L~l~~n~l~~~~~-----------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------ 164 (317)
T 3o53_A 102 ETLHAANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL------ 164 (317)
T ss_dssp CEEECCSSCCSEEEE-----------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG------
T ss_pred CEEECCCCccCCcCc-----------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH------
Confidence 999999998765431 236789999999999998888888999999999999999975433222
Q ss_pred ccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCC
Q 036984 362 EGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP 441 (603)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 441 (603)
...+++|+.|++++|.+++. + ....+++|++|++++|++++. |
T Consensus 165 ----------------------------------~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~ 207 (317)
T 3o53_A 165 ----------------------------------AASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-G 207 (317)
T ss_dssp ----------------------------------GGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-C
T ss_pred ----------------------------------hhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-h
Confidence 23467899999999999855 3 234589999999999999954 4
Q ss_pred cCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCccc-ccCCCcccccCCCCcccccCCcCCCC
Q 036984 442 ITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS-GKIPDRVAQFSTFEEDSYEGNPFLYG 510 (603)
Q Consensus 442 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~l~~l~~~~l~gn~~~c~ 510 (603)
..+..+++|++|++++|++++..+.+..+++|+.|++++|++. +.+|..+..++.++.+++.+++.+.+
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred hhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 5588899999999999999954337888999999999999998 66777778888888888886554443
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=6.3e-26 Score=224.45 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=47.9
Q ss_pred CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCc-cCcCccCC-------CCCCCCEEEcccCcCCccCCcccc-
Q 036984 80 TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLS-GSLPLCLT-------NLTSLQVLDVSYNQLTESISSSPL- 150 (603)
Q Consensus 80 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~~- 150 (603)
.++|++|++++|.+ .+|..+... |++|++++|.++ ...|..+. ++++|++|++++|.+++.+|...+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45666666666666 345544433 666666666663 22333333 466677777777766655555222
Q ss_pred cCCCCCcEEEccCceee
Q 036984 151 MLLTSIEELILSNNHFQ 167 (603)
Q Consensus 151 ~~l~~L~~L~l~~n~~~ 167 (603)
..+++|++|++++|.++
T Consensus 118 ~~l~~L~~L~Ls~N~l~ 134 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWA 134 (312)
T ss_dssp CCSCCCSEEEEESCBCS
T ss_pred hcCCCccEEEccCCCCc
Confidence 55666666666666544
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=4.1e-24 Score=207.70 Aligned_cols=208 Identities=21% Similarity=0.230 Sum_probs=121.8
Q ss_pred CCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccC
Q 036984 254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ 333 (603)
Q Consensus 254 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 333 (603)
++|++|++++|.+. .++...+..+++|++|++++|.+..+. +..+..+++|++|++++|.+++..+..+..
T Consensus 28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIE--------DGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEEC--------TTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccC--------HHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 35666666666665 344333334566666666665554322 233445666666666666666555566666
Q ss_pred CCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCc
Q 036984 334 LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLT 413 (603)
Q Consensus 334 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 413 (603)
+++|++|++++|.+.+..+ ..+..+++|++|++++|.++
T Consensus 99 l~~L~~L~l~~n~l~~~~~-----------------------------------------~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLEN-----------------------------------------FPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp CTTCCEEECTTSCCCCSTT-----------------------------------------CCCTTCTTCCEEECCSSCCC
T ss_pred CccccEEECCCCCccccCc-----------------------------------------hhcccCCCCCEEECcCCccc
Confidence 6666666666666653211 11233556666666666665
Q ss_pred cc-CchhccCcCcCCEEecccccccccCCcCCcCCCCCC----EEeCCCCcCcccCCCccCCCCCCceecccCcccccCC
Q 036984 414 GE-IPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIE----SLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIP 488 (603)
Q Consensus 414 ~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p 488 (603)
+. +|..+..+++|++|++++|++++..+..|..+++|+ +|++++|++++..+......+|+.|++++|++++..+
T Consensus 138 ~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT
T ss_pred eecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCH
Confidence 42 356666666666666666666655555555555555 6666677666544444444466667777776665555
Q ss_pred CcccccCCCCcccccCCcCCCCC
Q 036984 489 DRVAQFSTFEEDSYEGNPFLYGQ 511 (603)
Q Consensus 489 ~~~~~l~~l~~~~l~gn~~~c~~ 511 (603)
..+..++.++.+++++||+.|.+
T Consensus 218 ~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 218 GIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TTTTTCCSCCEEECCSSCBCCCT
T ss_pred hHhcccccccEEEccCCcccccC
Confidence 55566666677777777776643
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=7.7e-24 Score=206.60 Aligned_cols=110 Identities=25% Similarity=0.266 Sum_probs=63.7
Q ss_pred cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCcee
Q 036984 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFR 477 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~ 477 (603)
+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|+++...+ .+..+++|+.|+
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 4455556666665554444555566666666666666665555555556666666666666653333 345566666666
Q ss_pred cccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984 478 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 478 l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c 509 (603)
+++|+++ .+|..+.....++.++++||||.|
T Consensus 179 L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 6666665 455555555556666666666666
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.9e-24 Score=226.64 Aligned_cols=220 Identities=22% Similarity=0.176 Sum_probs=187.6
Q ss_pred CCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCc
Q 036984 226 QHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPN 305 (603)
Q Consensus 226 l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~ 305 (603)
+++|+.|++++|.+.+..|.. +..+++|++|+|++|.+++..| +..+++|+.|++++|.+.++.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~---------- 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAAD---LAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL---------- 96 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGG---GTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE----------
T ss_pred CCCccEEEeeCCcCCCCCHHH---HhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC----------
Confidence 448999999999999876665 7789999999999999985544 555899999999999887543
Q ss_pred cccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEec
Q 036984 306 WIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSP 385 (603)
Q Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (603)
..++|++|++++|.+++..+. .+++|+.|++++|.+++..|..
T Consensus 97 ---~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~------------------------------- 139 (487)
T 3oja_A 97 ---VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD------------------------------- 139 (487)
T ss_dssp ---ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBC-------------------------------
T ss_pred ---CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchh-------------------------------
Confidence 138999999999999977654 4688999999999998654432
Q ss_pred CCCCCCcchhhhhcccceEEECcCCCCcccCchhcc-CcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccC
Q 036984 386 NGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIG-YLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI 464 (603)
Q Consensus 386 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 464 (603)
+..+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++..+ +..+++|+.|++++|.+++.+
T Consensus 140 ----------~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 140 ----------EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp ----------GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC
T ss_pred ----------hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC
Confidence 34478999999999999988888876 79999999999999997633 346899999999999999877
Q ss_pred CCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCCCC
Q 036984 465 PQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQ 511 (603)
Q Consensus 465 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~ 511 (603)
|.+..+++|+.|++++|.+++ +|..+..++.++.+++++|++.|++
T Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 788899999999999999996 7777889999999999999999854
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.4e-23 Score=199.06 Aligned_cols=226 Identities=19% Similarity=0.215 Sum_probs=180.8
Q ss_pred ccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEE
Q 036984 205 LTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHL 284 (603)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L 284 (603)
+..+.+..+.+.+. .....+++|+.|++++|.+.. .+. +..+++|++|++++|.+. .++ .+..+++|++|
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~~----l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L 90 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQG----IQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYL 90 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-CTT----GGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEE
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-ccc----cccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEE
Confidence 33344444444332 335677889999999998763 333 678899999999999987 444 34458899999
Q ss_pred ecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccc
Q 036984 285 NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGY 364 (603)
Q Consensus 285 ~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 364 (603)
++++|.+..+ .+..++.+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 91 ~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------ 150 (272)
T 3rfs_A 91 ILTGNQLQSL--------PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK------------ 150 (272)
T ss_dssp ECTTSCCCCC--------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------
T ss_pred ECCCCccCcc--------ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH------------
Confidence 9988877643 34556778999999999999998888889999999999999999974333
Q ss_pred cCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCC
Q 036984 365 YDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITF 444 (603)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 444 (603)
..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..|
T Consensus 151 -----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (272)
T 3rfs_A 151 -----------------------------GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201 (272)
T ss_dssp -----------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred -----------------------------HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence 223457899999999999998888788999999999999999998888889
Q ss_pred cCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccC
Q 036984 445 SNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFS 495 (603)
Q Consensus 445 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~ 495 (603)
..+++|+.|++++|++.+. ++.|+.++++.|.++|.+|..++.++
T Consensus 202 ~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 202 DRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred hCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 9999999999999998864 55789999999999999998765554
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=6.4e-23 Score=199.25 Aligned_cols=209 Identities=23% Similarity=0.237 Sum_probs=158.3
Q ss_pred CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcc
Q 036984 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW 306 (603)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~ 306 (603)
++|+.|++++|.+.+..+.. +..+++|++|++++|.+. .++...+..+++|++|++++|.+..+. +..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA--------LGA 95 (276)
T ss_dssp TTCCEEECTTCCCCEECTTT---TTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEEC--------TTT
T ss_pred CCccEEECCCCcccccCHhH---hccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccC--------hhh
Confidence 46788888888877655544 566788888888888887 555555555788888888887765443 455
Q ss_pred ccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccC-CChhhhcccccccccCCCCCCCcCCCCCCeeEEec
Q 036984 307 IDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGH-IPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSP 385 (603)
Q Consensus 307 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (603)
+..+++|++|++++|.+.+..+..+..+++|++|++++|++++. +|.
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-------------------------------- 143 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-------------------------------- 143 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG--------------------------------
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch--------------------------------
Confidence 66688888888888888877776788888889999988888641 232
Q ss_pred CCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCC----EEecccccccccCCcCCcCCCCCCEEeCCCCcCc
Q 036984 386 NGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIR----ALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461 (603)
Q Consensus 386 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 461 (603)
.+..+++|+.|++++|++++..+..+..+++|+ +|++++|.+++..+..+.. .+|++|++++|+++
T Consensus 144 ---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 144 ---------YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLK 213 (276)
T ss_dssp ---------GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCS
T ss_pred ---------hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCcee
Confidence 344467888899999988877777777777776 8899999998666665544 47999999999998
Q ss_pred ccCC-CccCCCCCCceecccCcccccCCC
Q 036984 462 GKIP-QLIVLTTLAVFRVAYNNLSGKIPD 489 (603)
Q Consensus 462 ~~~~-~~~~l~~L~~L~l~~N~l~~~~p~ 489 (603)
+..+ .+..+++|+.|++++|++.+..|.
T Consensus 214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 214 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ecCHhHhcccccccEEEccCCcccccCCc
Confidence 6555 567889999999999999876653
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=3.1e-22 Score=193.53 Aligned_cols=205 Identities=21% Similarity=0.258 Sum_probs=160.8
Q ss_pred CCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccc
Q 036984 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI 307 (603)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l 307 (603)
+.+.++++++.++ .+|..+ .++++.|++++|.+. .++...+..+++|++|++++|.+..+. +..+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~-----~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~--------~~~~ 81 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI-----PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLP--------AGIF 81 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC-----CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCC--------TTTT
T ss_pred CCCEEEccCCCCC-ccCCCC-----CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeC--------hhhh
Confidence 4677888888776 355431 257888888888887 566655666888888888888776443 3345
Q ss_pred cCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCC
Q 036984 308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG 387 (603)
Q Consensus 308 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (603)
..+++|++|++++|.+++..+..|..+++|++|++++|++++..+
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------------------- 126 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP----------------------------------- 126 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-----------------------------------
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH-----------------------------------
Confidence 668889999999999887777778888999999999998874332
Q ss_pred CCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-C
Q 036984 388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-Q 466 (603)
Q Consensus 388 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~ 466 (603)
..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+ .
T Consensus 127 ------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 127 ------RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ------HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 223457789999999999987766678889999999999999997777778889999999999999986555 5
Q ss_pred ccCCCCCCceecccCcccccCC
Q 036984 467 LIVLTTLAVFRVAYNNLSGKIP 488 (603)
Q Consensus 467 ~~~l~~L~~L~l~~N~l~~~~p 488 (603)
+..+++|+.|++++|++.+..+
T Consensus 201 ~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTCTTCCEEECCSSCBCCSSS
T ss_pred hccccCCCEEEecCCCeeCCCc
Confidence 7788999999999999887654
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=6.1e-26 Score=245.98 Aligned_cols=400 Identities=14% Similarity=0.084 Sum_probs=243.0
Q ss_pred hcCCCcEEEccCCcC-CCCCCCc------------cccCCCCCCCEEEccCCcCCCCccCccc--CCCCCEEEccCC-CC
Q 036984 30 LMASLRLLSLSYSRL-NKNTILD------------QGFCQLVHLQELYIRDNDLRDSLLGAWQ--TTSLQELNVASN-KL 93 (603)
Q Consensus 30 ~~~~L~~L~Ls~n~i-~~~~~~~------------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~~~L~~L~Ls~n-~l 93 (603)
.+++|+.|+++++.. ......+ .....+++|++|++++|.+++.....+. +++|++|++++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 367788888877642 1111111 1123567788888888777665554442 778888888877 34
Q ss_pred CcC-CchhhcCCCCCcEEeccCCCCccCcCccC----CCCCCCCEEEcccCc--CCccCCcccccCCCCCcEEEccCcee
Q 036984 94 TRN-FPLGLCELVLLRELYIDNNDLSGSLPLCL----TNLTSLQVLDVSYNQ--LTESISSSPLMLLTSIEELILSNNHF 166 (603)
Q Consensus 94 ~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~--i~~~~~~~~~~~l~~L~~L~l~~n~~ 166 (603)
... .+..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. +...........+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 332 23334467788888888877664433332 356678888887775 22111111223457788888877621
Q ss_pred eeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCC------CCcChhhccCCCCCEE-EcCCCcc
Q 036984 167 QIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDD------GTFPKFLYHQHDLKNA-DLSHLNL 239 (603)
Q Consensus 167 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L-~L~~n~i 239 (603)
... ....+.++ ++|+.|++..+... ..++..+.++++|+.+ .+.....
T Consensus 224 ~~~-l~~~~~~~------------------------~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 224 LEK-LATLLQRA------------------------PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp HHH-HHHHHHHC------------------------TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG
T ss_pred HHH-HHHHHhcC------------------------CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch
Confidence 101 00111122 24555554443211 0123456778888888 3333221
Q ss_pred cCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEecc
Q 036984 240 SGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLA 319 (603)
Q Consensus 240 ~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~ 319 (603)
+.++.. ...+++|++|++++|.+.+.....+...+++|++|++++| +.+- .++.....+++|++|++.
T Consensus 279 -~~l~~~---~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~-------~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 279 -AYLPAV---YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA-------GLEVLASTCKDLRELRVF 346 (594)
T ss_dssp -GGGGGG---HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH-------HHHHHHHHCTTCCEEEEE
T ss_pred -hhHHHH---HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH-------HHHHHHHhCCCCCEEEEe
Confidence 122221 3357889999999888764433444456888999888876 3211 122233347888999883
Q ss_pred C---------CcCcccCCcccc-CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCC
Q 036984 320 N---------NYIEGEIPAQLC-QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSP 389 (603)
Q Consensus 320 ~---------n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (603)
+ +.+++.....+. .+++|+.|+++.|.+++..+.
T Consensus 347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~------------------------------------ 390 (594)
T 2p1m_B 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI------------------------------------ 390 (594)
T ss_dssp CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH------------------------------------
T ss_pred cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH------------------------------------
Confidence 3 455433333333 478888888888877632211
Q ss_pred CCcchhhhhcccceEEECc--C----CCCcccC-----chhccCcCcCCEEecccccccccCCcCCcC-CCCCCEEeCCC
Q 036984 390 MGKEETVQILTSMSGIDLS--C----NKLTGEI-----PTQIGYLTRIRALNLSHNNLTGTIPITFSN-LKQIESLDLSY 457 (603)
Q Consensus 390 ~~~~~~~~~l~~L~~L~Ls--~----n~l~~~~-----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~ 457 (603)
.....+++|+.|+++ + +.+++.. +..+..+++|++|+|++ .+++..+..+.. +++|+.|++++
T Consensus 391 ----~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~ 465 (594)
T 2p1m_B 391 ----TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF 465 (594)
T ss_dssp ----HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred ----HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC
Confidence 122347899999999 4 5666322 22356789999999988 676655555554 78999999999
Q ss_pred CcCcccCC-Cc-cCCCCCCceecccCcccccCC-CcccccCCCCcccccCCcC
Q 036984 458 NLLHGKIP-QL-IVLTTLAVFRVAYNNLSGKIP-DRVAQFSTFEEDSYEGNPF 507 (603)
Q Consensus 458 N~l~~~~~-~~-~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~l~~~~l~gn~~ 507 (603)
|.+++... .+ ..+++|+.|++++|+++...+ .....++.++.+++++|+.
T Consensus 466 ~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 99976544 33 568999999999999965433 2345588999999999876
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.4e-21 Score=190.49 Aligned_cols=205 Identities=20% Similarity=0.206 Sum_probs=165.4
Q ss_pred hccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCccc
Q 036984 223 LYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGS 302 (603)
Q Consensus 223 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~ 302 (603)
+..++++++++++++.++ .+|..+ .++++.|++++|.+. .++...+..+++|+.|++++|.+..+..
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~-----~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~------ 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL-----PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV------ 72 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC-----CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEEC------
T ss_pred ccccCCccEEECCCCCCC-cCCCCC-----CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccC------
Confidence 556778899999988887 455432 368899999999998 4555555568999999999988876542
Q ss_pred CCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeE
Q 036984 303 IPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSY 382 (603)
Q Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (603)
.+.+++|++|++++|.++ .+|..+..+++|++|++++|++++..+
T Consensus 73 ----~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~------------------------------ 117 (290)
T 1p9a_G 73 ----DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL------------------------------ 117 (290)
T ss_dssp ----CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS------------------------------
T ss_pred ----CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH------------------------------
Confidence 145789999999999998 567788889999999999999974332
Q ss_pred EecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcc
Q 036984 383 FSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG 462 (603)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 462 (603)
..+..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|.++++|+.|++++|+++.
T Consensus 118 -----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 118 -----------GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp -----------STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred -----------HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 234457889999999999997777788899999999999999997777778889999999999999994
Q ss_pred cCCCccCCCCCCceecccCccccc
Q 036984 463 KIPQLIVLTTLAVFRVAYNNLSGK 486 (603)
Q Consensus 463 ~~~~~~~l~~L~~L~l~~N~l~~~ 486 (603)
..+.+...++|+.+++++|++.+.
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cChhhcccccCCeEEeCCCCccCc
Confidence 333777888999999999999864
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=6.4e-22 Score=191.49 Aligned_cols=214 Identities=21% Similarity=0.241 Sum_probs=166.6
Q ss_pred CCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccc
Q 036984 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI 307 (603)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l 307 (603)
.+..+++..+.+..... ...+++|+.|++++|.+. .++. ...+++|+.|++++|.+.++ ..+
T Consensus 20 ~l~~l~l~~~~~~~~~~-----~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~----------~~l 81 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT-----QNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI----------SAL 81 (272)
T ss_dssp HHHHHHHTCSCTTSEEC-----HHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC----------GGG
T ss_pred HHHHHHhcCcccccccc-----cccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc----------hhh
Confidence 34455666665543322 567889999999999987 5553 33488999999998887543 256
Q ss_pred cCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCC
Q 036984 308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG 387 (603)
Q Consensus 308 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (603)
+.+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------------------------------- 126 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD----------------------------------- 126 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-----------------------------------
T ss_pred cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH-----------------------------------
Confidence 678999999999999998888888999999999999999874333
Q ss_pred CCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-C
Q 036984 388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-Q 466 (603)
Q Consensus 388 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~ 466 (603)
..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++++.++ .
T Consensus 127 ------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (272)
T 3rfs_A 127 ------GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200 (272)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ------HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence 223457789999999999997777778889999999999999998777778899999999999999997766 5
Q ss_pred ccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcC
Q 036984 467 LIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF 507 (603)
Q Consensus 467 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~ 507 (603)
+..+++|+.|++++|++.+..| .++.+++.+|.+
T Consensus 201 ~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~ 234 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKH 234 (272)
T ss_dssp TTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHT
T ss_pred HhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhC
Confidence 7889999999999999886655 344444444443
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=193.74 Aligned_cols=230 Identities=18% Similarity=0.188 Sum_probs=119.1
Q ss_pred cccEEeccCCCCCCCcCh---hhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCCh---hhhhc
Q 036984 204 QLTSISLSGYRDDGTFPK---FLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPV---EIGTY 277 (603)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~---~~~~~ 277 (603)
.++.+.+..+.+...... ....+++|++|++++|.+.+..|..+.. ..+++|++|++++|.+.+..+. ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE-ATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS-CCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh-ccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 456666666655422111 1223455777777777777666665211 5567777777777777643331 11123
Q ss_pred CCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCccc--C--CccccCCCCCCEEecCCCcCccCCCh
Q 036984 278 LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGE--I--PAQLCQLKEVRLIDLSHNNLSGHIPF 353 (603)
Q Consensus 278 l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~Ls~n~l~~~~~~ 353 (603)
+++|++|++++|.+.. ..+..++.+++|++|++++|++.+. . +..+..+++|++|++++|+++. ++.
T Consensus 144 ~~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~ 214 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPA--------FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTG 214 (310)
T ss_dssp CSCCCEEEEECCSSCC--------CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHH
T ss_pred ccCCCEEEeeCCCcch--------hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHH
Confidence 5566666665555432 2234445566666666666665431 1 1223455566666666665541 110
Q ss_pred hhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCc---CcCCEEe
Q 036984 354 CLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYL---TRIRALN 430 (603)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~ 430 (603)
. ....+..+++|++|++++|.+++..|..+..+ ++|++|+
T Consensus 215 ~-------------------------------------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 215 V-------------------------------------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp H-------------------------------------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE
T ss_pred H-------------------------------------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE
Confidence 0 00012334556666666666655544444444 4566666
Q ss_pred cccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCccc
Q 036984 431 LSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484 (603)
Q Consensus 431 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~ 484 (603)
|++|+++ .+|..+. ++|++||+++|++++ +|.+..+++|+.|++++|+++
T Consensus 258 Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 258 LSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTTTS
T ss_pred CCCCCCC-chhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCCCCC
Confidence 6666665 3444442 456666666666653 233445555555555555554
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=5.3e-21 Score=182.75 Aligned_cols=212 Identities=20% Similarity=0.247 Sum_probs=165.3
Q ss_pred CCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccC
Q 036984 254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ 333 (603)
Q Consensus 254 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 333 (603)
...+.++++++.++ .+|..+. ++++.|++++|.+..+. +..+..+++|++|++++|.+++..+..|..
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 81 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLS--------DATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCC--------TTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccC--------HhHhcCcccCCEEECCCCcCCccCHhHhcc
Confidence 56789999999998 7887654 58999999988876543 455677999999999999999888888999
Q ss_pred CCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCc
Q 036984 334 LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLT 413 (603)
Q Consensus 334 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 413 (603)
+++|++|++++|++++..+ ..+..+++|+.|++++|.++
T Consensus 82 l~~L~~L~L~~n~l~~~~~-----------------------------------------~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPL-----------------------------------------GVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp CTTCCEEECTTSCCCCCCT-----------------------------------------TTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCEEECCCCcccccCh-----------------------------------------hHhcccCCCCEEEcCCCcCC
Confidence 9999999999999974332 23445789999999999999
Q ss_pred ccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCCCccc
Q 036984 414 GEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVA 492 (603)
Q Consensus 414 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~ 492 (603)
+..+..+..+++|++|+|++|++++..+..|.++++|++|++++|++++..+ .+..+++|+.|++++|++.+...+. .
T Consensus 121 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~ 199 (251)
T 3m19_A 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEI-L 199 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTH-H
T ss_pred CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcccc-H
Confidence 7777778999999999999999997777789999999999999999997766 7888999999999999998763331 1
Q ss_pred ccC------CCCcccccCCcCCCCCCCCCCCCCC
Q 036984 493 QFS------TFEEDSYEGNPFLYGQPLSKSCDDN 520 (603)
Q Consensus 493 ~l~------~l~~~~l~gn~~~c~~~~~~~C~~~ 520 (603)
.+. .....+..|+. .|+.+....|..+
T Consensus 200 ~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 200 YLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp HHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred HHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 111 11222334544 4666667778655
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=6.6e-21 Score=182.08 Aligned_cols=181 Identities=22% Similarity=0.234 Sum_probs=115.5
Q ss_pred CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcc
Q 036984 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNW 306 (603)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~ 306 (603)
.+.+.++++++.+. .+|..+ .++++.|++++|.+. .++...+..+++|++|++++|.+..+ .+..
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~-----~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~ 78 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGI-----PADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTL--------SAGV 78 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCC-----CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCC--------CTTT
T ss_pred CCCeEEecCCCCcc-ccCCCC-----CCCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCcc--------CHhH
Confidence 45666777777665 344331 246777777777776 34444444467777777766665432 2344
Q ss_pred ccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecC
Q 036984 307 IDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPN 386 (603)
Q Consensus 307 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (603)
+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------------------- 124 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS---------------------------------- 124 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------------------------
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh----------------------------------
Confidence 5556777777777777776666666777777777777777753222
Q ss_pred CCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCccc
Q 036984 387 GSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGK 463 (603)
Q Consensus 387 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 463 (603)
..+..+++|+.|++++|++++..+..+..+++|++|+|++|++++..+..|.++++|+.|++++|++++.
T Consensus 125 -------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 125 -------GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -------hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 1233456677777777777755555677777777777777777766666677777777777777777654
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.8e-22 Score=204.02 Aligned_cols=171 Identities=20% Similarity=0.212 Sum_probs=105.7
Q ss_pred CCccEEEccCccccccCChhhhh---c-CCCCcEEecCCCCcccccCCcCcccCCccccCCC-CCCEEeccCCcCcccCC
Q 036984 254 QKLATLDVSNNFFQGHIPVEIGT---Y-LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLP-QISYLLLANNYIEGEIP 328 (603)
Q Consensus 254 ~~L~~L~Ls~n~~~~~~~~~~~~---~-l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~ 328 (603)
++|++|++++|.+++..+..+.. . .++|++|++++|.+.+.... .++..+..++ +|++|++++|.+++..+
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 184 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD----ELIQILAAIPANVNSLNLRGNNLASKNC 184 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH----HHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH----HHHHHHhcCCccccEeeecCCCCchhhH
Confidence 45666666666665322222221 1 24677777777666532211 1223334444 78888888888876665
Q ss_pred ccc----cCC-CCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhh-cccc
Q 036984 329 AQL----CQL-KEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQI-LTSM 402 (603)
Q Consensus 329 ~~~----~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L 402 (603)
..+ ..+ ++|+.|++++|.+++.....+. ..+.. .++|
T Consensus 185 ~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~-------------------------------------~~l~~~~~~L 227 (362)
T 3goz_A 185 AELAKFLASIPASVTSLDLSANLLGLKSYAELA-------------------------------------YIFSSIPNHV 227 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH-------------------------------------HHHHHSCTTC
T ss_pred HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH-------------------------------------HHHhcCCCCc
Confidence 433 344 5888888888888642221111 11222 3588
Q ss_pred eEEECcCCCCcccCch----hccCcCcCCEEeccccccccc-------CCcCCcCCCCCCEEeCCCCcCcccCC
Q 036984 403 SGIDLSCNKLTGEIPT----QIGYLTRIRALNLSHNNLTGT-------IPITFSNLKQIESLDLSYNLLHGKIP 465 (603)
Q Consensus 403 ~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~ 465 (603)
+.|+|++|.+++..+. .+..+++|++|+|++|.+.+. ++..+.++++|+.||+++|++.+..+
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 8899998888865543 346678899999999984432 34467788889999999999886544
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.2e-20 Score=185.96 Aligned_cols=195 Identities=16% Similarity=0.265 Sum_probs=156.6
Q ss_pred hccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCccc
Q 036984 223 LYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGS 302 (603)
Q Consensus 223 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~ 302 (603)
...+++|+.|++++|.+.. ++. +..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.++.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~~----~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~------- 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IEG----VQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS------- 101 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CTT----GGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-------
T ss_pred HHHcCCcCEEEeeCCCccC-chh----hhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-------
Confidence 4567888999999988864 343 677899999999999987 5655 455889999999998876542
Q ss_pred CCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeE
Q 036984 303 IPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSY 382 (603)
Q Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (603)
.+..+++|++|++++|.+++. + .+..+++|+.|++++|++++..
T Consensus 102 ---~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~------------------------------- 145 (308)
T 1h6u_A 102 ---AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNIS------------------------------- 145 (308)
T ss_dssp ---GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG-------------------------------
T ss_pred ---hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCc-------------------------------
Confidence 466789999999999999864 3 3888999999999999886321
Q ss_pred EecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcc
Q 036984 383 FSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG 462 (603)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 462 (603)
.+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++
T Consensus 146 ------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 146 ------------PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp ------------GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred ------------cccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence 14457889999999999985443 8889999999999999986544 7888999999999999985
Q ss_pred cCCCccCCCCCCceecccCcccc
Q 036984 463 KIPQLIVLTTLAVFRVAYNNLSG 485 (603)
Q Consensus 463 ~~~~~~~l~~L~~L~l~~N~l~~ 485 (603)
.. .+..+++|+.|++++|++++
T Consensus 210 ~~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 210 VS-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CG-GGTTCTTCCEEEEEEEEEEC
T ss_pred cc-cccCCCCCCEEEccCCeeec
Confidence 44 57889999999999999975
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.3e-21 Score=191.44 Aligned_cols=210 Identities=18% Similarity=0.131 Sum_probs=129.4
Q ss_pred CCCCCEEEccCCcCCCCccC----cccCCCCCEEEccCCCCCcCCchhh--cCCCCCcEEeccCCCCccCcC----ccCC
Q 036984 57 LVHLQELYIRDNDLRDSLLG----AWQTTSLQELNVASNKLTRNFPLGL--CELVLLRELYIDNNDLSGSLP----LCLT 126 (603)
Q Consensus 57 l~~L~~L~Ls~n~i~~~~~~----~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~~~ 126 (603)
...++.+.+.++.++..... ...+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34577888888776532211 1125679999999998888788777 888899999999998876544 3456
Q ss_pred CCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCccccc
Q 036984 127 NLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLT 206 (603)
Q Consensus 127 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~ 206 (603)
.+++|++|++++|.+.+ ++...+..+++|++|++++|++.+....... ..+...++|+
T Consensus 143 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------~~~~~l~~L~ 200 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAA---------------------LCPHKFPAIQ 200 (310)
T ss_dssp BCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTT---------------------SCTTSSCCCC
T ss_pred hccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHH---------------------HhhhcCCCCC
Confidence 78899999999998875 4444788888999999998876432110000 0011222556
Q ss_pred EEeccCCCCCCCc--Ch-hhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcE
Q 036984 207 SISLSGYRDDGTF--PK-FLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMH 283 (603)
Q Consensus 207 ~L~l~~~~~~~~~--~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~ 283 (603)
+|++++|.++... +. .+..+++|++|++++|.+.+..|..+..+..+++|++|++++|.++ .+|..++ ++|+.
T Consensus 201 ~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~ 276 (310)
T 4glp_A 201 NLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRV 276 (310)
T ss_dssp SCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSC
T ss_pred EEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCE
Confidence 6666666654211 11 2355566666666666666555554333333356666666666665 4554432 35555
Q ss_pred EecCCCCcc
Q 036984 284 LNLSRNAFN 292 (603)
Q Consensus 284 L~L~~n~l~ 292 (603)
|++++|++.
T Consensus 277 L~Ls~N~l~ 285 (310)
T 4glp_A 277 LDLSSNRLN 285 (310)
T ss_dssp EECCSCCCC
T ss_pred EECCCCcCC
Confidence 555555443
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=6.3e-23 Score=207.37 Aligned_cols=267 Identities=19% Similarity=0.197 Sum_probs=153.3
Q ss_pred EEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCcc----Cccc-CC-CCCEEEccCCCCCcCCchhhcCC-----C
Q 036984 37 LSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLL----GAWQ-TT-SLQELNVASNKLTRNFPLGLCEL-----V 105 (603)
Q Consensus 37 L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~-~~-~L~~L~Ls~n~l~~~~~~~~~~l-----~ 105 (603)
+++++|.+++. .+..+...++|++|++++|.+++.+. ..+. ++ +|++|++++|.+.+..+..+..+ +
T Consensus 3 ~~ls~n~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNP--VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCH--HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHH--HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 45566655542 22333344446666666666666555 4444 55 66666666666666555555543 6
Q ss_pred CCcEEeccCCCCccCcCcc----CCCC-CCCCEEEcccCcCCccCCccc----ccC-CCCCcEEEccCceeeeecCcccc
Q 036984 106 LLRELYIDNNDLSGSLPLC----LTNL-TSLQVLDVSYNQLTESISSSP----LML-LTSIEELILSNNHFQIPISLEPL 175 (603)
Q Consensus 106 ~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~L~~n~i~~~~~~~~----~~~-l~~L~~L~l~~n~~~~~~~~~~l 175 (603)
+|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+. . +.. .++|++|++++|.+.....
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---- 155 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-EFKQAFSNLPASITSLNLRGNDLGIKSS---- 155 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-HHHHHHTTSCTTCCEEECTTSCGGGSCH----
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-HHHHHHHhCCCceeEEEccCCcCCHHHH----
Confidence 6666666666666544442 2333 5666666666666532221 2 222 2456666666665441110
Q ss_pred CCCCCCceeeccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCC-CCCEEEcCCCcccCCCCCCCc-ccccc
Q 036984 176 SNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQH-DLKNADLSHLNLSGEFPNWLM-PIHCL 253 (603)
Q Consensus 176 ~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~-~~~~l 253 (603)
..++..+...+ +|+.|++++|.+++..+..+. .+..+
T Consensus 156 -----------------------------------------~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 194 (362)
T 3goz_A 156 -----------------------------------------DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194 (362)
T ss_dssp -----------------------------------------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred -----------------------------------------HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhC
Confidence 01122333343 677777777776654433211 12334
Q ss_pred -CCccEEEccCcccccc----CChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccC-
Q 036984 254 -QKLATLDVSNNFFQGH----IPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEI- 327 (603)
Q Consensus 254 -~~L~~L~Ls~n~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~- 327 (603)
++|++|++++|.+.+. ++..+....++|++|++++|.+.+.+... +...+..+++|++|++++|.+.+..
T Consensus 195 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----l~~~~~~l~~L~~L~L~~n~l~~i~~ 270 (362)
T 3goz_A 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN----LKLLKDSLKHLQTVYLDYDIVKNMSK 270 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH----HHHTTTTTTTCSEEEEEHHHHTTCCH
T ss_pred CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH----HHHHHhcCCCccEEEeccCCccccCH
Confidence 4788888888887632 33344443458888888888776543211 1234456788999999999854433
Q ss_pred ------CccccCCCCCCEEecCCCcCccCCChhh
Q 036984 328 ------PAQLCQLKEVRLIDLSHNNLSGHIPFCL 355 (603)
Q Consensus 328 ------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 355 (603)
+..+..+++|+.||+++|++....+..+
T Consensus 271 ~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 271 EQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp HHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred HHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 3356778899999999999986655433
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.7e-21 Score=180.69 Aligned_cols=195 Identities=15% Similarity=0.210 Sum_probs=108.6
Q ss_pred CccEEEccCccccccCChhhhhcCCCCcEEecCCCC-cccccCCcCcccCCccccCCCCCCEEeccC-CcCcccCCcccc
Q 036984 255 KLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNA-FNDLSYNRLQGSIPNWIDRLPQISYLLLAN-NYIEGEIPAQLC 332 (603)
Q Consensus 255 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~ 332 (603)
+++.|++++|.++ .++...+..+++|++|++++|. +..+. +..+..+++|++|++++ |.+++..+..|.
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~--------~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLE--------SHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEEC--------TTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeC--------HhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 5566666666665 4444444445666666666554 43332 22344466666666665 666655555666
Q ss_pred CCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccce---EEECcC
Q 036984 333 QLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMS---GIDLSC 409 (603)
Q Consensus 333 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~---~L~Ls~ 409 (603)
.+++|++|++++|++++ +|. +..+++|+ .|++++
T Consensus 103 ~l~~L~~L~l~~n~l~~-lp~------------------------------------------~~~l~~L~~L~~L~l~~ 139 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKM-FPD------------------------------------------LTKVYSTDIFFILEITD 139 (239)
T ss_dssp CCTTCCEEEEEEECCCS-CCC------------------------------------------CTTCCBCCSEEEEEEES
T ss_pred CCCCCCEEeCCCCCCcc-ccc------------------------------------------cccccccccccEEECCC
Confidence 66666666666666653 221 11233333 666666
Q ss_pred C-CCcccCchhccCcCcCC-EEecccccccccCCcCCcCCCCCCEEeCCCCc-CcccCC-CccCC-CCCCceecccCccc
Q 036984 410 N-KLTGEIPTQIGYLTRIR-ALNLSHNNLTGTIPITFSNLKQIESLDLSYNL-LHGKIP-QLIVL-TTLAVFRVAYNNLS 484 (603)
Q Consensus 410 n-~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~l-~~L~~L~l~~N~l~ 484 (603)
| .+++..+..|..+++|+ +|++++|+++...+..|.. ++|++|++++|+ +++..+ .+..+ ++|+.|++++|+++
T Consensus 140 N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 6 66655555566666666 6666666666333334443 566666666663 664434 45556 66666666666666
Q ss_pred ccCCCcccccCCCCcccccCC
Q 036984 485 GKIPDRVAQFSTFEEDSYEGN 505 (603)
Q Consensus 485 ~~~p~~~~~l~~l~~~~l~gn 505 (603)
+ +|.. .++.++.+.++++
T Consensus 219 ~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 219 A-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp C-CCCT--TCTTCSEEECTTC
T ss_pred c-CChh--HhccCceeeccCc
Confidence 3 3332 4555555555544
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=7.7e-23 Score=208.88 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=23.5
Q ss_pred CchhhcCCCCCcEEeccCCCCccCcC----ccCCCCCCCCEEEcccCc
Q 036984 97 FPLGLCELVLLRELYIDNNDLSGSLP----LCLTNLTSLQVLDVSYNQ 140 (603)
Q Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~ 140 (603)
++..+..+++|++|+|++|.++...+ ..+.++++|++|+|++|.
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~ 71 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF 71 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccc
Confidence 33445555666666666666554322 235555566666665543
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2.5e-22 Score=201.12 Aligned_cols=258 Identities=17% Similarity=0.166 Sum_probs=164.1
Q ss_pred CCCcEEEccCCcCCCCCCCccccCCC--CCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcC-CchhhcCCCCCc
Q 036984 32 ASLRLLSLSYSRLNKNTILDQGFCQL--VHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRN-FPLGLCELVLLR 108 (603)
Q Consensus 32 ~~L~~L~Ls~n~i~~~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~ 108 (603)
..++.++++++.+.. ..+..+ ++++.|++++|.+.+..+..+.+++|++|++++|.+.+. .+..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCCH-----HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCCH-----HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 457788887776652 345555 777888888887777777666677888888888877654 566677777888
Q ss_pred EEeccCCCCccCcCccCCCCCCCCEEEcccC-cCCcc-CCcccccCCCCCcEEEccCc-eeeeecCccccCCCCCCceee
Q 036984 109 ELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN-QLTES-ISSSPLMLLTSIEELILSNN-HFQIPISLEPLSNLSKLKAFN 185 (603)
Q Consensus 109 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~l~~L~~L~~l~ 185 (603)
+|++++|.+++..+..++++++|++|++++| .+++. ++. .+..+++|++|++++| .++..
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~---------------- 184 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEK---------------- 184 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHH----------------
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChH----------------
Confidence 8888888777666677777778888888777 55532 333 4566677777777766 44311
Q ss_pred ccceeeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCC-CCCEEEcCCCc--cc-CCCCCCCccccccCCccEEEc
Q 036984 186 GEIYLETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQH-DLKNADLSHLN--LS-GEFPNWLMPIHCLQKLATLDV 261 (603)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~--i~-~~~~~~~~~~~~l~~L~~L~L 261 (603)
..+..+..++ +|+.|++++|. ++ +.++.. +..+++|+.|++
T Consensus 185 --------------------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~---~~~~~~L~~L~l 229 (336)
T 2ast_B 185 --------------------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL---VRRCPNLVHLDL 229 (336)
T ss_dssp --------------------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH---HHHCTTCSEEEC
T ss_pred --------------------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH---HhhCCCCCEEeC
Confidence 1234455666 77777777773 33 222322 455777788888
Q ss_pred cCcc-ccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEE
Q 036984 262 SNNF-FQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLI 340 (603)
Q Consensus 262 s~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 340 (603)
++|. +++..+..+.. +++|++|++++|. .+.. .....++.+++|++|++++| ++......+. ..++.|
T Consensus 230 ~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~--~~~~-----~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L 298 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQ-LNYLQHLSLSRCY--DIIP-----ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHL 298 (336)
T ss_dssp TTCTTCCGGGGGGGGG-CTTCCEEECTTCT--TCCG-----GGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTS
T ss_pred CCCCcCCHHHHHHHhC-CCCCCEeeCCCCC--CCCH-----HHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcce
Confidence 7777 55444444443 6788888887774 1110 11124556788888888888 4432222221 236666
Q ss_pred ecCCCcCccCCChhhhc
Q 036984 341 DLSHNNLSGHIPFCLVN 357 (603)
Q Consensus 341 ~Ls~n~l~~~~~~~~~~ 357 (603)
++++|++++..|..++.
T Consensus 299 ~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 299 QINCSHFTTIARPTIGN 315 (336)
T ss_dssp EESCCCSCCTTCSSCSS
T ss_pred EEecccCccccCCcccc
Confidence 68888888777765544
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.1e-20 Score=184.04 Aligned_cols=195 Identities=22% Similarity=0.320 Sum_probs=166.0
Q ss_pred ccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCc
Q 036984 250 IHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPA 329 (603)
Q Consensus 250 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 329 (603)
...+++|++|++++|.+. .++ . +..+++|+.|++++|.+.++. . +..+++|++|++++|.+++. .
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~-~~~l~~L~~L~L~~n~i~~~~---------~-~~~l~~L~~L~L~~n~l~~~--~ 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLA---------P-LKNLTKITELELSGNPLKNV--S 101 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCG---------G-GTTCCSCCEEECCSCCCSCC--G
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-h-hhccCCCCEEEccCCcCCCCh---------h-HccCCCCCEEEccCCcCCCc--h
Confidence 456889999999999998 666 3 345899999999999887543 2 67799999999999999864 3
Q ss_pred cccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcC
Q 036984 330 QLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSC 409 (603)
Q Consensus 330 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 409 (603)
.+..+++|+.|++++|++++. + .+..+++|+.|++++
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~-~------------------------------------------~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDV-T------------------------------------------PLAGLSNLQVLYLDL 138 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCC-G------------------------------------------GGTTCTTCCEEECCS
T ss_pred hhcCCCCCCEEECCCCCCCCc-h------------------------------------------hhcCCCCCCEEECCC
Confidence 689999999999999999731 1 245578999999999
Q ss_pred CCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCC
Q 036984 410 NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPD 489 (603)
Q Consensus 410 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 489 (603)
|.+++..+ +..+++|++|++++|.+++..+ +.++++|+.|++++|++++ ++.+..+++|++|++++|++++..|
T Consensus 139 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~- 212 (308)
T 1h6u_A 139 NQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVSP- 212 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCCCBCGG-
T ss_pred CccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc-ChhhcCCCCCCEEEccCCccCcccc-
Confidence 99996544 8899999999999999996544 8899999999999999995 4458889999999999999997654
Q ss_pred cccccCCCCcccccCCcCCC
Q 036984 490 RVAQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 490 ~~~~l~~l~~~~l~gn~~~c 509 (603)
+..++.++.+++++|++.+
T Consensus 213 -l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 213 -LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GTTCTTCCEEEEEEEEEEC
T ss_pred -ccCCCCCCEEEccCCeeec
Confidence 7889999999999999865
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=8.9e-21 Score=179.83 Aligned_cols=198 Identities=17% Similarity=0.187 Sum_probs=162.1
Q ss_pred CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcc-ccccCChhhhhcCCCCcEEecCC-CCcccccCCcCcccCC
Q 036984 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNF-FQGHIPVEIGTYLPGLMHLNLSR-NAFNDLSYNRLQGSIP 304 (603)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~~~ 304 (603)
++++.|++++|++++..+.. +..+++|++|++++|. ++ .++...+..+++|++|++++ |.+..+. +
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~---~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~--------~ 98 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHA---FSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYID--------P 98 (239)
T ss_dssp TTCCEEEEESCCCSEECTTT---TTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEEC--------T
T ss_pred CcccEEEEeCCcceEECHHH---ccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcC--------H
Confidence 38999999999998766655 6779999999999997 87 77777777799999999998 8776543 4
Q ss_pred ccccCCCCCCEEeccCCcCcccCCccccCCCCCC---EEecCCC-cCccCCChhhhcccccccccCCCCCCCcCCCCCCe
Q 036984 305 NWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVR---LIDLSHN-NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPAL 380 (603)
Q Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (603)
..+..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~---------------------------- 148 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV---------------------------- 148 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT----------------------------
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc----------------------------
Confidence 567779999999999999986 554 88889998 9999999 8863222
Q ss_pred eEEecCCCCCCcchhhhhcccce-EEECcCCCCcccCchhccCcCcCCEEeccccc-ccccCCcCCcCC-CCCCEEeCCC
Q 036984 381 SYFSPNGSPMGKEETVQILTSMS-GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN-LTGTIPITFSNL-KQIESLDLSY 457 (603)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~Ls~ 457 (603)
..+..+++|+ .|++++|+++...+..+.. ++|++|++++|+ +++..+..|.++ ++|+.||+++
T Consensus 149 -------------~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 149 -------------NAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp -------------TTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred -------------ccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 2345578999 9999999999555545555 899999999995 997778889999 9999999999
Q ss_pred CcCcccCCCccCCCCCCceecccCc
Q 036984 458 NLLHGKIPQLIVLTTLAVFRVAYNN 482 (603)
Q Consensus 458 N~l~~~~~~~~~l~~L~~L~l~~N~ 482 (603)
|++++..+. .+++|+.|+++++.
T Consensus 215 N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 215 TSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CccccCChh--HhccCceeeccCcc
Confidence 999944334 68899999998763
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=5.4e-22 Score=202.58 Aligned_cols=249 Identities=20% Similarity=0.300 Sum_probs=143.9
Q ss_pred cChhhccCCCCCEEEcCCCcccCCCCCCCc-cccccCCccEEEccCcc---ccccCChhh------hhcCCCCcEEecCC
Q 036984 219 FPKFLYHQHDLKNADLSHLNLSGEFPNWLM-PIHCLQKLATLDVSNNF---FQGHIPVEI------GTYLPGLMHLNLSR 288 (603)
Q Consensus 219 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~~~~l~~L~~L~Ls~n~---~~~~~~~~~------~~~l~~L~~L~L~~ 288 (603)
++..+..+++|+.|++++|.+.+..+..+. .+..+++|++|++++|. +.+.+|..+ +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 455667777788888888777654222110 14457778888887753 333444443 23467888888877
Q ss_pred CCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCcccc----CC---------CCCCEEecCCCcCcc-CCChh
Q 036984 289 NAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLC----QL---------KEVRLIDLSHNNLSG-HIPFC 354 (603)
Q Consensus 289 n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~Ls~n~l~~-~~~~~ 354 (603)
|.+.+.+. ..+|..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|+++. .+|.
T Consensus 104 n~l~~~~~----~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~- 178 (386)
T 2ca6_A 104 NAFGPTAQ----EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE- 178 (386)
T ss_dssp CCCCTTTH----HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH-
T ss_pred CcCCHHHH----HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH-
Confidence 76643110 02445566678888888888887644333333 33 788888888888762 2221
Q ss_pred hhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcc-----cCchhccCcCcCCEE
Q 036984 355 LVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG-----EIPTQIGYLTRIRAL 429 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L 429 (603)
+ ...+..+++|+.|++++|.++. ..+..+..+++|++|
T Consensus 179 l-------------------------------------~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L 221 (386)
T 2ca6_A 179 W-------------------------------------AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221 (386)
T ss_dssp H-------------------------------------HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEE
T ss_pred H-------------------------------------HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEE
Confidence 0 0123345566666666666652 122245566666666
Q ss_pred eccccccc----ccCCcCCcCCCCCCEEeCCCCcCccc----CC-Cc--cCCCCCCceecccCcccc----cCCCcc-cc
Q 036984 430 NLSHNNLT----GTIPITFSNLKQIESLDLSYNLLHGK----IP-QL--IVLTTLAVFRVAYNNLSG----KIPDRV-AQ 493 (603)
Q Consensus 430 ~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~-~~--~~l~~L~~L~l~~N~l~~----~~p~~~-~~ 493 (603)
+|++|.++ ..+|..+..+++|++|++++|.+++. ++ .+ ..+++|++|++++|.++. .+|..+ ..
T Consensus 222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence 66666664 34555556666666666666666543 22 33 225666666666666665 355544 33
Q ss_pred cCCCCcccccCCcCCC
Q 036984 494 FSTFEEDSYEGNPFLY 509 (603)
Q Consensus 494 l~~l~~~~l~gn~~~c 509 (603)
++.++.+++++|++..
T Consensus 302 l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 302 MPDLLFLELNGNRFSE 317 (386)
T ss_dssp CTTCCEEECTTSBSCT
T ss_pred CCCceEEEccCCcCCc
Confidence 5666666666666544
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=8.2e-21 Score=190.09 Aligned_cols=245 Identities=15% Similarity=0.164 Sum_probs=172.2
Q ss_pred cccEEeccCCCCCCCcChhhccC--CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCcccccc-CChhhhhcCCC
Q 036984 204 QLTSISLSGYRDDGTFPKFLYHQ--HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGH-IPVEIGTYLPG 280 (603)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~~~l~~ 280 (603)
.++.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++. .+..+++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE----HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSK 119 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS----CCCCBCCCEEECTTCEECHHHHHH-HHTTBCC
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh----hccCCCCCEEEccCCCcCHHHHHH-HHhhCCC
Confidence 4778888887765 4556666 7899999999988877665 34678899999999988644 443 3445889
Q ss_pred CcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCC-cCccc-CCccccCCCCCCEEecCCC-cCccC-CChhhh
Q 036984 281 LMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANN-YIEGE-IPAQLCQLKEVRLIDLSHN-NLSGH-IPFCLV 356 (603)
Q Consensus 281 L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~ 356 (603)
|++|++++|.+.+ ..+..++.+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++
T Consensus 120 L~~L~L~~~~l~~--------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~---- 187 (336)
T 2ast_B 120 LQNLSLEGLRLSD--------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ---- 187 (336)
T ss_dssp CSEEECTTCBCCH--------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH----
T ss_pred CCEEeCcCcccCH--------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH----
Confidence 9998888876543 34556677889999999998 67653 5566778889999999998 77632 12
Q ss_pred cccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcc-cceEEECcCC--CCc-ccCchhccCcCcCCEEecc
Q 036984 357 NTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILT-SMSGIDLSCN--KLT-GEIPTQIGYLTRIRALNLS 432 (603)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~Ls 432 (603)
..+..++ +|++|++++| .++ +.++..+..+++|++|+++
T Consensus 188 -------------------------------------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 188 -------------------------------------VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp -------------------------------------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred -------------------------------------HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 2344566 8888888888 454 3456666778888888888
Q ss_pred ccc-ccccCCcCCcCCCCCCEEeCCCCc-CcccCC-CccCCCCCCceecccCcccccCCCcccccC-CCCcccccCCcCC
Q 036984 433 HNN-LTGTIPITFSNLKQIESLDLSYNL-LHGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFS-TFEEDSYEGNPFL 508 (603)
Q Consensus 433 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~l~~~~l~gn~~~ 508 (603)
+|. +++..+..+.++++|++|++++|. +..... .+..+++|+.|++++| +. ...+..+. .+..+++++|.+.
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSC
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCc
Confidence 888 666667777888888888888885 322111 4667888888888887 22 12333342 3666667666654
Q ss_pred C
Q 036984 509 Y 509 (603)
Q Consensus 509 c 509 (603)
.
T Consensus 307 ~ 307 (336)
T 2ast_B 307 T 307 (336)
T ss_dssp C
T ss_pred c
Confidence 4
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.5e-19 Score=167.45 Aligned_cols=181 Identities=19% Similarity=0.236 Sum_probs=142.3
Q ss_pred cEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCC
Q 036984 257 ATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKE 336 (603)
Q Consensus 257 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 336 (603)
+.++.+++.+. .+|..+ .++|++|++++|.+..+. +..++.+++|++|++++|++++..+..|..+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLP--------NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCC--------TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCC--------hhhhcccccCcEEECCCCccCccChhhcCCCCC
Confidence 45667777776 566544 347788777777665332 344566888888888888888777777888899
Q ss_pred CCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccC
Q 036984 337 VRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEI 416 (603)
Q Consensus 337 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 416 (603)
|++|++++|++++..+ ..+..+++|+.|++++|.+++..
T Consensus 78 L~~L~Ls~n~l~~~~~-----------------------------------------~~~~~l~~L~~L~L~~N~l~~~~ 116 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPN-----------------------------------------GVFDKLTQLKELALNTNQLQSLP 116 (208)
T ss_dssp CCEEECCSSCCCCCCT-----------------------------------------TTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCEEECCCCcCCccCH-----------------------------------------hHhcCccCCCEEEcCCCcCcccC
Confidence 9999999998873322 22345778999999999998777
Q ss_pred chhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccccCCCcccccCC
Q 036984 417 PTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFST 496 (603)
Q Consensus 417 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~ 496 (603)
+..+..+++|++|++++|++++..+..|..+++|++|++++|++.+. +++|++|+++.|+++|.+|..++.++.
T Consensus 117 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 77789999999999999999977777789999999999999988753 568899999999999999987765543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=3.1e-19 Score=179.34 Aligned_cols=226 Identities=20% Similarity=0.152 Sum_probs=120.8
Q ss_pred CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcE-EecCCCCcccccCCcCcccCCc
Q 036984 227 HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMH-LNLSRNAFNDLSYNRLQGSIPN 305 (603)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~-L~L~~n~l~~l~~~~~~~~~~~ 305 (603)
+++++|+|++|+++...+.. +.++++|++|+|++|.+.+.+|...|..+++++. +.++.|++.. ..|.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~---f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~--------l~~~ 98 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGA---FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY--------INPE 98 (350)
T ss_dssp TTCSEEEEESCCCSEECTTS---STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE--------ECTT
T ss_pred CCCCEEEccCCcCCCcCHHH---HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc--------cCch
Confidence 35666666666665333333 4556666666666666544555555555555544 2333333332 2244
Q ss_pred cccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCC-cCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEe
Q 036984 306 WIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN-NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFS 384 (603)
Q Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (603)
.+..+++|++|++++|.+....+..+....++..+++.++ .+. .++
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~-------------------------------- 145 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIE-------------------------------- 145 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EEC--------------------------------
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-ccc--------------------------------
Confidence 4555666666666666665555545555555556665442 332 111
Q ss_pred cCCCCCCcchhhhh-cccceEEECcCCCCcccCchhccCcCcCCEEeccc-ccccccCCcCCcCCCCCCEEeCCCCcCcc
Q 036984 385 PNGSPMGKEETVQI-LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH-NNLTGTIPITFSNLKQIESLDLSYNLLHG 462 (603)
Q Consensus 385 ~~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 462 (603)
...+.. ...++.|++++|+++.. +......++|++|++++ |.++.+.++.|.++++|++||+++|+|+.
T Consensus 146 --------~~~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 146 --------RNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp --------TTSSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred --------ccchhhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 111112 23566777777777743 33333456677777764 55664444567777777777777777773
Q ss_pred cCCCccCCCCCCceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984 463 KIPQLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 463 ~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c 509 (603)
..+. .+.+|+.|.+.++.--+.+|. +..++.++.+++. +++.|
T Consensus 217 lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~-~~~~c 259 (350)
T 4ay9_X 217 LPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT-YPSHC 259 (350)
T ss_dssp CCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS-CHHHH
T ss_pred cChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCC-CCccc
Confidence 3331 133444444444433345564 5666677666664 44444
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.7e-18 Score=173.88 Aligned_cols=239 Identities=18% Similarity=0.158 Sum_probs=138.3
Q ss_pred cEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCC-chhhcCCCCCcE-Ee
Q 036984 35 RLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNF-PLGLCELVLLRE-LY 111 (603)
Q Consensus 35 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~-L~ 111 (603)
++++.++++++. +|..+ .+++++|+|++|+|+.+++++|. +++|++|+|++|++.+.+ +..|.+++++++ +.
T Consensus 12 ~~v~C~~~~Lt~---iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTE---IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCCS---CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCCc---cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 345556655553 22222 24566666666666666666665 666666666666654433 345566666554 44
Q ss_pred ccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCc-eeeeecCccccCCCCCCceeecccee
Q 036984 112 IDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNN-HFQIPISLEPLSNLSKLKAFNGEIYL 190 (603)
Q Consensus 112 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~l~~L~~L~~l~~~~~~ 190 (603)
+++|+++.+.|.+|.++++|++|++++|.+.. ++...+....++..+++.++ .+.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~----------------------- 142 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIH----------------------- 142 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCC-----------------------
T ss_pred ccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccc-----------------------
Confidence 45566665556666666666666666666653 33334444445555555432 221
Q ss_pred eeccCCCCCCCcccccEEeccCCCCCCCcChhhccC-CCCCEEEcCCCcccCCCCCCCccccccCCccEEEccC-ccccc
Q 036984 191 ETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQ-HDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSN-NFFQG 268 (603)
Q Consensus 191 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~-n~~~~ 268 (603)
...+..+..+ ..++.|++++|.+....+.. ....+|+.+++++ |.+.
T Consensus 143 --------------------------~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~----f~~~~L~~l~l~~~n~l~- 191 (350)
T 4ay9_X 143 --------------------------TIERNSFVGLSFESVILWLNKNGIQEIHNSA----FNGTQLDELNLSDNNNLE- 191 (350)
T ss_dssp --------------------------EECTTSSTTSBSSCEEEECCSSCCCEECTTS----STTEEEEEEECTTCTTCC-
T ss_pred --------------------------cccccchhhcchhhhhhccccccccCCChhh----ccccchhHHhhccCCccc-
Confidence 1111222222 24667777777776433332 2345688888875 4554
Q ss_pred cCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCC
Q 036984 269 HIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHN 345 (603)
Q Consensus 269 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 345 (603)
.+|...|..+++|+.|++++|++..+... .+.+|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus 192 ~i~~~~f~~l~~L~~LdLs~N~l~~lp~~-----------~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 192 ELPNDVFHGASGPVILDISRTRIHSLPSY-----------GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCTTTTTTEECCSEEECTTSCCCCCCSS-----------SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CCCHHHhccCcccchhhcCCCCcCccChh-----------hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 78877777788888888888877655421 13456666655543333555 4778888999998754
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=4.7e-19 Score=165.20 Aligned_cols=134 Identities=25% Similarity=0.253 Sum_probs=87.7
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCC
Q 036984 311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPM 390 (603)
Q Consensus 311 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (603)
+++++|++++|.++++.+..|..+++|+.|++++|++++..|.
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~------------------------------------- 74 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD------------------------------------- 74 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT-------------------------------------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH-------------------------------------
Confidence 5677777777777766666777777777777777777643332
Q ss_pred CcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccC
Q 036984 391 GKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIV 469 (603)
Q Consensus 391 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~ 469 (603)
.+..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..|..|.++++|+.|++++|++++..+ .+..
T Consensus 75 ----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 75 ----AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp ----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ----HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 22335567777777777765555556666777777777777766666666666777777777777665444 4556
Q ss_pred CCCCCceecccCcccc
Q 036984 470 LTTLAVFRVAYNNLSG 485 (603)
Q Consensus 470 l~~L~~L~l~~N~l~~ 485 (603)
+++|+.|++++|++.+
T Consensus 151 l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 151 LRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred CCCCCEEEeCCCCcCC
Confidence 6666666666666654
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=164.31 Aligned_cols=155 Identities=20% Similarity=0.216 Sum_probs=101.8
Q ss_pred cEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCC-ccccCCCCCCEEecCCCcCccCCChhhhcccc
Q 036984 282 MHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIP-AQLCQLKEVRLIDLSHNNLSGHIPFCLVNTAL 360 (603)
Q Consensus 282 ~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 360 (603)
+.+++++|.+..+ |..+ .+.+++|++++|.+++..+ ..|..+++|+.|++++|++++..+
T Consensus 14 ~~l~~s~n~l~~i---------P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-------- 74 (220)
T 2v70_A 14 TTVDCSNQKLNKI---------PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-------- 74 (220)
T ss_dssp TEEECCSSCCSSC---------CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT--------
T ss_pred CEeEeCCCCcccC---------ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH--------
Confidence 4666666655432 3322 2345777777777776643 446777777777777777763322
Q ss_pred cccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccC
Q 036984 361 SEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI 440 (603)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 440 (603)
..+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..
T Consensus 75 ---------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 121 (220)
T 2v70_A 75 ---------------------------------GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121 (220)
T ss_dssp ---------------------------------TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred ---------------------------------HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence 12334567777777777777666666777777777777777777666
Q ss_pred CcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCC
Q 036984 441 PITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIP 488 (603)
Q Consensus 441 ~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p 488 (603)
|..|.++++|++|++++|++++..| .+..+++|+.|++++|++.+..+
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7777777777777777777776655 66667777777777777766444
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=3.3e-19 Score=179.79 Aligned_cols=178 Identities=22% Similarity=0.228 Sum_probs=127.1
Q ss_pred ccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcccc-CCCCCCEEeccCCcCcccCCccccCC
Q 036984 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID-RLPQISYLLLANNYIEGEIPAQLCQL 334 (603)
Q Consensus 256 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l 334 (603)
-+.++++++.+. .+|..+. +.++.|+|++|.+..+. +..+. .+++|++|++++|.++++.+..|..+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~--------~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLR--------AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEEC--------TTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccC--------hhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence 367889988887 7887654 36788888888776544 33344 57888888888888887777788888
Q ss_pred CCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcc
Q 036984 335 KEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTG 414 (603)
Q Consensus 335 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 414 (603)
++|++|+|++|++++..+ ..+..+++|+.|+|++|.+++
T Consensus 88 ~~L~~L~Ls~N~l~~~~~-----------------------------------------~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDE-----------------------------------------FLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp TTCCEEECCSSCCCEECT-----------------------------------------TTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCEEECCCCcCCcCCH-----------------------------------------HHhCCCcCCCEEECCCCcccE
Confidence 888888888888863222 223446778888888888887
Q ss_pred cCchhccCcCcCCEEecccccccccCCcCC---cCCCCCCEEeCCCCcCcccCC-CccCCCC--CCceecccCccccc
Q 036984 415 EIPTQIGYLTRIRALNLSHNNLTGTIPITF---SNLKQIESLDLSYNLLHGKIP-QLIVLTT--LAVFRVAYNNLSGK 486 (603)
Q Consensus 415 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~--L~~L~l~~N~l~~~ 486 (603)
..+..|..+++|++|+|++|++++..+..| ..+++|+.||+++|++++..+ .+..++. ++.|++++|++.+.
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 777778888888888888888875544445 457788888888888874333 4555655 36777777777653
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.2e-18 Score=168.13 Aligned_cols=173 Identities=24% Similarity=0.387 Sum_probs=116.9
Q ss_pred ccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCc
Q 036984 250 IHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPA 329 (603)
Q Consensus 250 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 329 (603)
...+++|+.|++++|.+. .++. +..+++|+.|++++|.+.++. . +..+++|++|++++|.+++. .
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~---------~-l~~l~~L~~L~l~~n~l~~~--~ 106 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIK---------P-LANLKNLGWLFLDENKVKDL--S 106 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG---------G-GTTCTTCCEEECCSSCCCCG--G
T ss_pred hhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCc---------c-cccCCCCCEEECCCCcCCCC--h
Confidence 345566666666666665 4442 233667777776666655332 1 45567777777777777642 2
Q ss_pred cccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcC
Q 036984 330 QLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSC 409 (603)
Q Consensus 330 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 409 (603)
.+..+++|++|++++|++++. ..+..+++|+.|++++
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~~-------------------------------------------~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISDI-------------------------------------------NGLVHLPQLESLYLGN 143 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCCC-------------------------------------------GGGGGCTTCCEEECCS
T ss_pred hhccCCCCCEEECCCCcCCCC-------------------------------------------hhhcCCCCCCEEEccC
Confidence 367777777777777777521 1234466777788887
Q ss_pred CCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCcccc
Q 036984 410 NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSG 485 (603)
Q Consensus 410 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~ 485 (603)
|.+++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|.+++ ++.+..+++|+.|++++|+++.
T Consensus 144 n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 144 NKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEEC
T ss_pred CcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccC
Confidence 777744 467778888888888888875544 7778888888888888874 4567778888888888888774
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=6.1e-19 Score=163.26 Aligned_cols=136 Identities=27% Similarity=0.314 Sum_probs=89.8
Q ss_pred HhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCC
Q 036984 29 ELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLL 107 (603)
Q Consensus 29 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (603)
..+++|++|++++|.++.. .+..|..+++|++|++++|.++.+++..|. +++|++|++++|.+++..+..|.++++|
T Consensus 25 ~~~~~l~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSL--PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CCCTTCSEEECCSSCCCCC--CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCcEEEcCCCccCcC--ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 3355677777777776642 234466677777777777777776666665 6777777777777776555556677777
Q ss_pred cEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceee
Q 036984 108 RELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQ 167 (603)
Q Consensus 108 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~ 167 (603)
++|++++|++++..+..|.++++|++|++++|.+++ ++...+..+++|++|++++|++.
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBC
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCee
Confidence 777777777766555556677777777777777763 44435666677777777776543
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=7.8e-19 Score=185.45 Aligned_cols=187 Identities=24% Similarity=0.373 Sum_probs=149.7
Q ss_pred CCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccc
Q 036984 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI 307 (603)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l 307 (603)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|+.|++++|.+..+ |. +
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-----~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~i---------p~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-----PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTL---------PE-L 118 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-----CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCC---------CC-C
T ss_pred CccEEEeCCCCCCc-cCHhH-----cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCc---------ch-h
Confidence 89999999999886 66542 378999999999998 788 2368999999998877643 33 3
Q ss_pred cCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCC
Q 036984 308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG 387 (603)
Q Consensus 308 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (603)
.. +|++|++++|.+++ +|. .+++|+.|++++|++++ +|.
T Consensus 119 ~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---------------------------------- 157 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---------------------------------- 157 (571)
T ss_dssp CT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----------------------------------
T ss_pred hc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----------------------------------
Confidence 32 89999999999987 554 67899999999999974 331
Q ss_pred CCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCC-------CEEeCCCCcC
Q 036984 388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQI-------ESLDLSYNLL 460 (603)
Q Consensus 388 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l 460 (603)
.+++|+.|++++|.+++ +|. +. ++|+.|+|++|+|+ .+|. |.+ +| +.|++++|+|
T Consensus 158 ----------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 158 ----------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp ----------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred ----------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence 25789999999999996 555 65 89999999999999 6666 654 77 9999999999
Q ss_pred cccCC-CccCCCCCCceecccCcccccCCCcccccC
Q 036984 461 HGKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFS 495 (603)
Q Consensus 461 ~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~ 495 (603)
+ .+| .+..+++|+.|++++|++++.+|..++.+.
T Consensus 220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 9 466 677899999999999999998887776654
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=4.7e-18 Score=159.53 Aligned_cols=156 Identities=21% Similarity=0.202 Sum_probs=120.0
Q ss_pred CCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhccc
Q 036984 280 GLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTA 359 (603)
Q Consensus 280 ~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 359 (603)
+-+.++.+++.+..+ |..+ .++|++|++++|.+++..+..|..+++|+.|++++|++....
T Consensus 20 s~~~v~c~~~~l~~i---------p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-------- 80 (229)
T 3e6j_A 20 SGTTVDCRSKRHASV---------PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-------- 80 (229)
T ss_dssp ETTEEECTTSCCSSC---------CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------
T ss_pred eCCEeEccCCCcCcc---------CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC--------
Confidence 346677777766543 3322 278889999999998888888888899999999999886321
Q ss_pred ccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccccccccc
Q 036984 360 LSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT 439 (603)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 439 (603)
...+..+++|+.|+|++|.+++..+..|..+++|++|+|++|+++ .
T Consensus 81 ---------------------------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~ 126 (229)
T 3e6j_A 81 ---------------------------------VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-E 126 (229)
T ss_dssp ---------------------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-S
T ss_pred ---------------------------------hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-c
Confidence 223445778888888888888777777788888888888888888 6
Q ss_pred CCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccCcccccCC
Q 036984 440 IPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYNNLSGKIP 488 (603)
Q Consensus 440 ~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~p 488 (603)
+|..+..+++|+.|++++|++++..+ .+..+++|+.|++++|++.+..+
T Consensus 127 lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 77778888888888888888886555 57778888888888888887554
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=4.4e-18 Score=158.62 Aligned_cols=157 Identities=25% Similarity=0.283 Sum_probs=126.0
Q ss_pred cEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCC
Q 036984 257 ATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKE 336 (603)
Q Consensus 257 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 336 (603)
+.+++++|.++ .+|..+. +.++.|++++|.+..+. .+..++.+++|++|++++|.+++..+..|..+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~-------~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLE-------ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEEC-------CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccC-------chhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence 46777777776 6776543 35677777777765442 1234566888999999999998888888899999
Q ss_pred CCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccC
Q 036984 337 VRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEI 416 (603)
Q Consensus 337 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 416 (603)
|++|++++|++++..+ ..+..+++|++|+|++|.+++..
T Consensus 83 L~~L~Ls~N~l~~~~~-----------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~ 121 (220)
T 2v70_A 83 VNEILLTSNRLENVQH-----------------------------------------KMFKGLESLKTLMLRSNRITCVG 121 (220)
T ss_dssp CCEEECCSSCCCCCCG-----------------------------------------GGGTTCSSCCEEECTTSCCCCBC
T ss_pred CCEEECCCCccCccCH-----------------------------------------hHhcCCcCCCEEECCCCcCCeEC
Confidence 9999999999874433 23445778999999999999888
Q ss_pred chhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC
Q 036984 417 PTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP 465 (603)
Q Consensus 417 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 465 (603)
|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++.+..+
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 8899999999999999999998889999999999999999999987554
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.5e-18 Score=174.97 Aligned_cols=178 Identities=23% Similarity=0.224 Sum_probs=129.5
Q ss_pred CEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhh-cCCCCcEEecCCCCcccccCCcCcccCCcccc
Q 036984 230 KNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGT-YLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID 308 (603)
Q Consensus 230 ~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~ 308 (603)
+.++++++.+. .+|..+ .+.++.|+|++|.++ .++...+. .+++|+.|++++|.+..+. +..+.
T Consensus 21 ~~l~c~~~~l~-~iP~~~-----~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~--------~~~~~ 85 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL-----PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFIS--------SEAFV 85 (361)
T ss_dssp TEEECCSSCCS-SCCSSC-----CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEEC--------TTTTT
T ss_pred CEEEeCCCCcC-ccCccC-----CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccC--------hhhcc
Confidence 67888888876 455432 245788888888887 56555554 5888888888888776543 34566
Q ss_pred CCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCC
Q 036984 309 RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGS 388 (603)
Q Consensus 309 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (603)
.+++|++|+|++|+++...+..|..+++|+.|+|++|++++..|
T Consensus 86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------------------------------------ 129 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR------------------------------------ 129 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------------------------------------
T ss_pred CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH------------------------------------
Confidence 68888888888888887777778888888888888888874333
Q ss_pred CCCcchhhhhcccceEEECcCCCCcccCchhc---cCcCcCCEEecccccccccCCcCCcCCCC--CCEEeCCCCcCccc
Q 036984 389 PMGKEETVQILTSMSGIDLSCNKLTGEIPTQI---GYLTRIRALNLSHNNLTGTIPITFSNLKQ--IESLDLSYNLLHGK 463 (603)
Q Consensus 389 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~ 463 (603)
..+..+++|+.|+|++|.+++..+..+ ..+++|+.|+|++|+|++..+..+..++. ++.|++++|++.+.
T Consensus 130 -----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 130 -----NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp -----TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred -----HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 233446788888888888886555445 56788888888888888655566777766 47888888888753
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=7.5e-18 Score=157.01 Aligned_cols=154 Identities=21% Similarity=0.272 Sum_probs=119.8
Q ss_pred cEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCC
Q 036984 257 ATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKE 336 (603)
Q Consensus 257 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 336 (603)
+.++++++.++ .+|..+. ++++.|++++|.+..+. +..+..+++|++|++++|.+++..+..|.++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~--------~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 81 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIP--------PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEEC--------TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcC--------HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC
Confidence 57888888887 7776553 57888888887776543 345566888888888888888877888888888
Q ss_pred CCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccC
Q 036984 337 VRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEI 416 (603)
Q Consensus 337 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 416 (603)
|++|++++|+++.. | ...+..+++|+.|+|++|.+++..
T Consensus 82 L~~L~Ls~N~l~~l-~----------------------------------------~~~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 82 LNSLVLYGNKITEL-P----------------------------------------KSLFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp CCEEECCSSCCCCC-C----------------------------------------TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCEEECCCCcCCcc-C----------------------------------------HhHccCCCCCCEEECCCCCCCEeC
Confidence 88888888888732 2 223445678888888888888777
Q ss_pred chhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCccc
Q 036984 417 PTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGK 463 (603)
Q Consensus 417 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 463 (603)
+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus 121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 88888888888888888888877777788888888888888888753
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=7.3e-18 Score=158.23 Aligned_cols=156 Identities=24% Similarity=0.292 Sum_probs=125.2
Q ss_pred ccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCC
Q 036984 256 LATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLK 335 (603)
Q Consensus 256 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 335 (603)
.+.++.+++.+. .+|..+. ++|+.|++++|.+..+ .|..+..+++|++|++++|.++...+..|..++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~--------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKL--------EPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCcc--------CHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence 567888888887 7887653 6889988888776543 356677788999999999999877777788899
Q ss_pred CCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCccc
Q 036984 336 EVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGE 415 (603)
Q Consensus 336 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 415 (603)
+|+.|++++|++++..+ ..+..+++|+.|++++|+++ .
T Consensus 89 ~L~~L~Ls~N~l~~l~~-----------------------------------------~~~~~l~~L~~L~Ls~N~l~-~ 126 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPS-----------------------------------------AVFDRLVHLKELFMCCNKLT-E 126 (229)
T ss_dssp TCCEEECCSSCCCCCCT-----------------------------------------TTTTTCTTCCEEECCSSCCC-S
T ss_pred CcCEEECCCCcCCccCh-----------------------------------------hHhCcchhhCeEeccCCccc-c
Confidence 99999999998874322 23345778999999999998 6
Q ss_pred CchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC
Q 036984 416 IPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP 465 (603)
Q Consensus 416 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 465 (603)
+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 127 lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 77788889999999999999997777778889999999999999886543
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7e-18 Score=164.52 Aligned_cols=173 Identities=21% Similarity=0.291 Sum_probs=144.2
Q ss_pred hccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCccc
Q 036984 223 LYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGS 302 (603)
Q Consensus 223 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~ 302 (603)
...+++|+.|++++|.+... +. +..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.++.
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~~----~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~------- 106 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-QG----IQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLS------- 106 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TT----GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGG-------
T ss_pred hhhcCcccEEEccCCCcccC-hh----HhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCCh-------
Confidence 45788899999999988743 43 678899999999999998 4554 455899999999999876542
Q ss_pred CCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeE
Q 036984 303 IPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSY 382 (603)
Q Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (603)
.+..+++|++|++++|.+++. ..+..+++|+.|++++|++++.
T Consensus 107 ---~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-------------------------------- 149 (291)
T 1h6t_A 107 ---SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-------------------------------- 149 (291)
T ss_dssp ---GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--------------------------------
T ss_pred ---hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--------------------------------
Confidence 367799999999999999864 4688999999999999999732
Q ss_pred EecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcc
Q 036984 383 FSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG 462 (603)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 462 (603)
..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 150 -----------~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 -----------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -----------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred -----------hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 234567899999999999996655 88999999999999999954 4 48899999999999999985
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=6.6e-18 Score=180.48 Aligned_cols=189 Identities=21% Similarity=0.258 Sum_probs=103.9
Q ss_pred ccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEE
Q 036984 205 LTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHL 284 (603)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L 284 (603)
+..+.+..+.+.+.. .+..+++|+.|++++|.+.. ++. +..+++|+.|+|++|.+. .++. +..+++|+.|
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~~----l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQG----IQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CTT----GGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEE
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-ChH----HccCCCCCEEEeeCCCCC-CChh--hccCCCCCEE
Confidence 333444444443322 24456666666666666643 232 556666666666666666 3333 3336666666
Q ss_pred ecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccc
Q 036984 285 NLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGY 364 (603)
Q Consensus 285 ~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 364 (603)
+|++|.+.+++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++++.
T Consensus 93 ~Ls~N~l~~l~----------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-------------- 146 (605)
T 1m9s_A 93 FLDENKIKDLS----------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-------------- 146 (605)
T ss_dssp ECCSSCCCCCT----------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--------------
T ss_pred ECcCCCCCCCh----------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--------------
Confidence 66666554321 344566666666666666542 3455666666666666666421
Q ss_pred cCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCC
Q 036984 365 YDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITF 444 (603)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 444 (603)
..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.|++. ..+
T Consensus 147 -----------------------------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l 193 (605)
T 1m9s_A 147 -----------------------------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RAL 193 (605)
T ss_dssp -----------------------------GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGG
T ss_pred -----------------------------hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHH
Confidence 122335556666666666654443 55566666666666666542 235
Q ss_pred cCCCCCCEEeCCCCcCcc
Q 036984 445 SNLKQIESLDLSYNLLHG 462 (603)
Q Consensus 445 ~~l~~L~~L~Ls~N~l~~ 462 (603)
..+++|+.|+|++|++++
T Consensus 194 ~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCTTCSEEECCSEEEEC
T ss_pred ccCCCCCEEEccCCcCcC
Confidence 556666666666666553
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=3e-17 Score=173.35 Aligned_cols=179 Identities=25% Similarity=0.436 Sum_probs=148.6
Q ss_pred CCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccC
Q 036984 254 QKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ 333 (603)
Q Consensus 254 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 333 (603)
.+++.|++++|.++ .+|..++ ++|+.|++++|.+..+ | ..+++|++|++++|.+++ +|. +..
T Consensus 59 ~~L~~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~~i---------p---~~l~~L~~L~Ls~N~l~~-ip~-l~~ 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALISL---------P---ELPASLEYLDACDNRLST-LPE-LPA 120 (571)
T ss_dssp TTCSEEECCSSCCS-CCCSCCC---TTCSEEECCSSCCSCC---------C---CCCTTCCEEECCSSCCSC-CCC-CCT
T ss_pred CCccEEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCccc---------c---cccCCCCEEEccCCCCCC-cch-hhc
Confidence 38999999999998 5887663 6899999999987644 3 236899999999999997 555 554
Q ss_pred CCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCc
Q 036984 334 LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLT 413 (603)
Q Consensus 334 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 413 (603)
+|+.|++++|++++ +|. .+++|+.|++++|.++
T Consensus 121 --~L~~L~Ls~N~l~~-lp~--------------------------------------------~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 121 --SLKHLDVDNNQLTM-LPE--------------------------------------------LPALLEYINADNNQLT 153 (571)
T ss_dssp --TCCEEECCSSCCSC-CCC--------------------------------------------CCTTCCEEECCSSCCS
T ss_pred --CCCEEECCCCcCCC-CCC--------------------------------------------cCccccEEeCCCCccC
Confidence 99999999999974 431 2678999999999999
Q ss_pred ccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCC-------CceecccCccccc
Q 036984 414 GEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTL-------AVFRVAYNNLSGK 486 (603)
Q Consensus 414 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L-------~~L~l~~N~l~~~ 486 (603)
+ +|. .+++|++|+|++|++++ +|. |. ++|+.|++++|+|+ .+|.+.. +| +.|++++|+++ .
T Consensus 154 ~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~~~~--~L~~~~~~L~~L~Ls~N~l~-~ 221 (571)
T 3cvr_A 154 M-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPAVPV--RNHHSEETEIFFRCRENRIT-H 221 (571)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCCCC----------CCEEEECCSSCCC-C
T ss_pred c-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhhHHH--hhhcccccceEEecCCCcce-e
Confidence 6 554 57899999999999996 666 65 89999999999999 5554433 77 99999999999 5
Q ss_pred CCCcccccCCCCcccccCCcCCC
Q 036984 487 IPDRVAQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 487 ~p~~~~~l~~l~~~~l~gn~~~c 509 (603)
+|..+..++.++.+++++|++.+
T Consensus 222 lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 222 IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCGGGGGSCTTEEEECCSSSCCH
T ss_pred cCHHHhcCCCCCEEEeeCCcCCC
Confidence 88888889999999999999866
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2e-17 Score=176.72 Aligned_cols=190 Identities=23% Similarity=0.370 Sum_probs=122.5
Q ss_pred CCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcccc
Q 036984 229 LKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID 308 (603)
Q Consensus 229 L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~ 308 (603)
+..+.+..+.+.+..+ ...+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.++. . +.
T Consensus 23 l~~l~l~~~~i~~~~~-----~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~---------~-l~ 84 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT-----QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIK---------P-LT 84 (605)
T ss_dssp HHHHHTTCSCTTSEEC-----HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCG---------G-GG
T ss_pred HHHHhccCCCcccccc-----hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCCh---------h-hc
Confidence 3334455554443222 455677777777777776 4542 334677777777777665432 1 55
Q ss_pred CCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCC
Q 036984 309 RLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGS 388 (603)
Q Consensus 309 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (603)
.+++|+.|+|++|.+.+. + .+..+++|+.|+|++|++.+.
T Consensus 85 ~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l-------------------------------------- 124 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDI-------------------------------------- 124 (605)
T ss_dssp GCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--------------------------------------
T ss_pred cCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--------------------------------------
Confidence 577777777777777642 2 567777777777777777521
Q ss_pred CCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCcc
Q 036984 389 PMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLI 468 (603)
Q Consensus 389 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 468 (603)
..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++ +|.+.
T Consensus 125 -----~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~l~ 194 (605)
T 1m9s_A 125 -----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALA 194 (605)
T ss_dssp -----GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGT
T ss_pred -----ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-ChHHc
Confidence 1234466777777777777744 456777777777777777775544 6677777777777777774 45666
Q ss_pred CCCCCCceecccCccccc
Q 036984 469 VLTTLAVFRVAYNNLSGK 486 (603)
Q Consensus 469 ~l~~L~~L~l~~N~l~~~ 486 (603)
.+++|+.|++++|++++.
T Consensus 195 ~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 195 GLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TCTTCSEEECCSEEEECC
T ss_pred cCCCCCEEEccCCcCcCC
Confidence 777777777777777653
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=2.1e-17 Score=150.54 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=63.1
Q ss_pred cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceec
Q 036984 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRV 478 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l 478 (603)
+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..+...-...++...+
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~ 156 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSL 156 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCC
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCC
Confidence 44555556666666555555666777777777777777777777777777777777777777765441111111222334
Q ss_pred ccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984 479 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 479 ~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~ 512 (603)
..+...+..|..+ ......++..+.+.|..+
T Consensus 157 ~~~~~~C~~P~~l---~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 157 NGGAARCGAPSKV---RDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp SGGGCBBCSSTTT---TTSBGGGSCTTTCCCCCC
T ss_pred CCCCCCCCCChHH---cCCChhhCcHhhcCcCCC
Confidence 4444444455433 222334455555556443
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3.4e-17 Score=149.91 Aligned_cols=85 Identities=18% Similarity=0.277 Sum_probs=47.6
Q ss_pred cccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCcc
Q 036984 251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQ 330 (603)
Q Consensus 251 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 330 (603)
..+++|+.|++++|.+. .+| .+ ..+++|++|++++|.+.++ ..+..+++|++|++++|.+++..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~l~~n~~~~~----------~~l~~l~~L~~L~l~~n~l~~~~~~~ 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GI-EYAHNIKDLTINNIHATNY----------NPISGLSNLERLRIMGKDVTSDKIPN 107 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TG-GGCTTCSEEEEESCCCSCC----------GGGTTCTTCCEEEEECTTCBGGGSCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HH-hcCCCCCEEEccCCCCCcc----------hhhhcCCCCCEEEeECCccCcccChh
Confidence 34556666666666665 444 22 2355666666665543321 23444566666666666666555555
Q ss_pred ccCCCCCCEEecCCCcCc
Q 036984 331 LCQLKEVRLIDLSHNNLS 348 (603)
Q Consensus 331 ~~~l~~L~~L~Ls~n~l~ 348 (603)
+..+++|++|++++|+++
T Consensus 108 l~~l~~L~~L~Ls~n~i~ 125 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHD 125 (197)
T ss_dssp CTTCTTCCEEECCSSBCB
T ss_pred hcCCCCCCEEEecCCccC
Confidence 666666666666666655
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.9e-17 Score=158.73 Aligned_cols=171 Identities=18% Similarity=0.230 Sum_probs=123.0
Q ss_pred ccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccc
Q 036984 252 CLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQL 331 (603)
Q Consensus 252 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 331 (603)
.+.++..++++++.+. .++ . +..+++|+.|++++|.+.++. .+..+++|++|++++|.+++..+ +
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~-~~~l~~L~~L~l~~n~i~~l~----------~l~~l~~L~~L~L~~N~i~~~~~--l 81 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-S-QKELSGVQNFNGDNSNIQSLA----------GMQFFTNLKELHLSHNQISDLSP--L 81 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-C-HHHHTTCSEEECTTSCCCCCT----------TGGGCTTCCEEECCSSCCCCCGG--G
T ss_pred HHHHHHHHHhcCCCcc-ccc-c-hhhcCcCcEEECcCCCcccch----------HHhhCCCCCEEECCCCccCCChh--h
Confidence 4556677777777776 444 2 233677888887777765432 34557788888888888876544 7
Q ss_pred cCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCC
Q 036984 332 CQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNK 411 (603)
Q Consensus 332 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 411 (603)
..+++|+.|++++|++++ +|. ... ++|+.|++++|.
T Consensus 82 ~~l~~L~~L~L~~N~l~~-l~~------------------------------------------~~~-~~L~~L~L~~N~ 117 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKN-LNG------------------------------------------IPS-ACLSRLFLDNNE 117 (263)
T ss_dssp TTCSSCCEEECCSSCCSC-CTT------------------------------------------CCC-SSCCEEECCSSC
T ss_pred ccCCCCCEEECCCCccCC-cCc------------------------------------------ccc-CcccEEEccCCc
Confidence 788888888888888763 110 011 578888888888
Q ss_pred CcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCccccc
Q 036984 412 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLSGK 486 (603)
Q Consensus 412 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~ 486 (603)
+++. + .+..+++|++|++++|++++. + .+..+++|+.|++++|++++. +.+..+++|+.|++++|++++.
T Consensus 118 l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 118 LRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 8753 3 577888888888888888854 3 577888888888888888855 6677888888888888888754
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=3.3e-17 Score=149.98 Aligned_cols=151 Identities=19% Similarity=0.257 Sum_probs=108.0
Q ss_pred CCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhc
Q 036984 278 LPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVN 357 (603)
Q Consensus 278 l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 357 (603)
+++|+.|++++|.+.++. .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..
T Consensus 43 l~~L~~L~l~~n~i~~l~----------~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~--- 107 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT----------GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPN--- 107 (197)
T ss_dssp HHTCCEEEEESSCCSCCT----------TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCC---
T ss_pred cCCccEEeccCCCccChH----------HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChh---
Confidence 567888888877765432 35557788888888886653 246777888888888888886433322
Q ss_pred ccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEeccccc-c
Q 036984 358 TALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN-L 436 (603)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l 436 (603)
+..+++|+.|++++|.+++..+..+..+++|++|++++|. +
T Consensus 108 --------------------------------------l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i 149 (197)
T 4ezg_A 108 --------------------------------------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149 (197)
T ss_dssp --------------------------------------CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred --------------------------------------hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence 2336778888888888887677778888888888888887 6
Q ss_pred cccCCcCCcCCCCCCEEeCCCCcCcccCCCccCCCCCCceecccCccc
Q 036984 437 TGTIPITFSNLKQIESLDLSYNLLHGKIPQLIVLTTLAVFRVAYNNLS 484 (603)
Q Consensus 437 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~N~l~ 484 (603)
+ .+| .+.++++|++|++++|++++ ++.+..+++|++|++++|++.
T Consensus 150 ~-~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 150 T-DIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp C-CCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC---
T ss_pred c-ccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcccC
Confidence 5 444 57778888888888888874 446777788888888888765
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=5.1e-17 Score=155.77 Aligned_cols=168 Identities=20% Similarity=0.296 Sum_probs=106.0
Q ss_pred CCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCccc
Q 036984 228 DLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWI 307 (603)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l 307 (603)
++..++++++.+.+.. . +..+++|+.|++++|.+. .++ . +..+++|+.|++++|.+.++. . +
T Consensus 20 ~l~~l~l~~~~i~~~~-~----~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~---------~-l 81 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-S----QKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLS---------P-L 81 (263)
T ss_dssp HHHHHHHTCSCTTSEE-C----HHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCG---------G-G
T ss_pred HHHHHHhcCCCccccc-c----hhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCCh---------h-h
Confidence 3444455555554222 1 455666666666666665 455 2 233666777666666655432 1 5
Q ss_pred cCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCC
Q 036984 308 DRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNG 387 (603)
Q Consensus 308 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (603)
..+++|++|++++|++++..+ +.. ++|+.|++++|++++.
T Consensus 82 ~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~------------------------------------- 121 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT------------------------------------- 121 (263)
T ss_dssp TTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS-------------------------------------
T ss_pred ccCCCCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCC-------------------------------------
Confidence 556777777777777765322 222 6777777777777531
Q ss_pred CCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCccc
Q 036984 388 SPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGK 463 (603)
Q Consensus 388 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 463 (603)
..+..+++|+.|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 122 ------~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 122 ------DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ------GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ------hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 1234466777777777777744 3 577778888888888888755 5677788888888888887744
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=3.7e-16 Score=142.12 Aligned_cols=112 Identities=22% Similarity=0.317 Sum_probs=103.0
Q ss_pred ccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceec
Q 036984 400 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRV 478 (603)
Q Consensus 400 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l 478 (603)
++++.|++++|.++ .+|..+..+++|++|+|++|+|++..+..|.++++|++|++++|++++..| .+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 57999999999998 677899999999999999999998888899999999999999999997777 7999999999999
Q ss_pred ccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984 479 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 479 ~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~ 512 (603)
++|++++..+..+..++.++.+++++|||.|++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 9999997777778899999999999999999543
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.5e-19 Score=190.36 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=35.6
Q ss_pred cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccC-CcCCcCCCCCCEEeCCCCcCcccCC
Q 036984 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI-PITFSNLKQIESLDLSYNLLHGKIP 465 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~ 465 (603)
+++|+.|+|++|.+++ +| .+..+++|++|+|++|++++.. |..|.++++|+.|++++|++++.+|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 4455555555555553 33 4555555555555555555444 5555555555555555555554443
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=2.4e-16 Score=143.47 Aligned_cols=113 Identities=22% Similarity=0.296 Sum_probs=99.4
Q ss_pred ccceEEECcCCCCcccCch-hccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCcee
Q 036984 400 TSMSGIDLSCNKLTGEIPT-QIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFR 477 (603)
Q Consensus 400 ~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~ 477 (603)
.++++|++++|.+++..+. .+..+++|++|+|++|++++..|..|.++++|++|++++|++++..+ .+..+++|++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 3788999999999866654 48889999999999999998888999999999999999999997777 588899999999
Q ss_pred cccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984 478 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 478 l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~ 512 (603)
+++|++++..|..+..++.++.+++++|+|.|.++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999889888899999999999999998554
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1.8e-16 Score=157.77 Aligned_cols=288 Identities=11% Similarity=0.061 Sum_probs=174.8
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCC-CCCCCEEEccCCcCC--CCccCcccCCCCCEEEccCCCCCcCCchhhcC----
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQ-LVHLQELYIRDNDLR--DSLLGAWQTTSLQELNVASNKLTRNFPLGLCE---- 103 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~-l~~L~~L~Ls~n~i~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~---- 103 (603)
+++++.|.++++- ..... ..+.. +++|++|||++|++. ...... ++.++.+.+..+.+ .+.+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~--~~l~~~l~~L~~LdLs~n~i~~~~~~~~~--~~~~~~~~~~~~~I---~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDF--RHLRDEFPSLKVLDISNAEIKMYSGKAGT--YPNGKFYIYMANFV---PAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHH--HHHHHSCTTCCEEEEEEEEECCEEESSSS--SGGGCCEEECTTEE---CTTTTEEEETT
T ss_pred hCceeEEEEeccc-cHHHH--HHHHHhhccCeEEecCcceeEEecCcccc--cccccccccccccc---CHHHhcccccc
Confidence 4567788887642 11100 12223 777888888888877 333222 23345555555533 3356677
Q ss_pred ----CCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeee---ecCccccC
Q 036984 104 ----LVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQI---PISLEPLS 176 (603)
Q Consensus 104 ----l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~---~~~~~~l~ 176 (603)
+++|+.|+|.+ .++.+.+.+|.++++|+.+++++|.+. .++..+|..+.++..+....+..-. ......+.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 88888888888 777777778888888888888888887 5666678877777777665532100 00111122
Q ss_pred CCCCCc-eeeccce-eeeccCCCCCCCcccccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccCCCCCCCccccccC
Q 036984 177 NLSKLK-AFNGEIY-LETESHYNSLTPKFQLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQ 254 (603)
Q Consensus 177 ~L~~L~-~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~ 254 (603)
++..|+ .+..... ......+..-....+++.+.+.+.-...........+++|+.+++++|.+....+.. |..++
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a---F~~~~ 250 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT---FAQKK 250 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT---TTTCT
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhh---hhCCC
Confidence 222222 1111000 000000001111224455555443221111111224788999999988887444443 67788
Q ss_pred CccEEEccCccccccCChhhhhcCCCCc-EEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccC
Q 036984 255 KLATLDVSNNFFQGHIPVEIGTYLPGLM-HLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQ 333 (603)
Q Consensus 255 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 333 (603)
+|+.+++.+| +. .++...|..+++|+ .+++.+ .+..++ +..|.+|++|+.+++++|.++.+.+.+|.+
T Consensus 251 ~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~--------~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 251 YLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIE--------FGAFMGCDNLRYVLATGDKITTLGDELFGN 319 (329)
T ss_dssp TCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEEC--------TTTTTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred CCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEc--------hhhhhCCccCCEEEeCCCccCccchhhhcC
Confidence 8999999887 66 78888888888898 888877 555554 345556889999999888888888888999
Q ss_pred CCCCCEEec
Q 036984 334 LKEVRLIDL 342 (603)
Q Consensus 334 l~~L~~L~L 342 (603)
+++|+.+..
T Consensus 320 ~~~L~~ly~ 328 (329)
T 3sb4_A 320 GVPSKLIYK 328 (329)
T ss_dssp TCCCCEEEC
T ss_pred Ccchhhhcc
Confidence 999988764
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=2.3e-16 Score=156.86 Aligned_cols=290 Identities=12% Similarity=0.038 Sum_probs=188.9
Q ss_pred CCCCceecccccccccccchHHHHHHhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc----
Q 036984 4 FKNLEHLVMDQMLVEVNTSFLQIVSELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ---- 79 (603)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~---- 79 (603)
+.+++.|.++++-- ..++.. ....+++|+.|||++|++...... ...++.++.+.+..+ .++..+|.
T Consensus 24 ~~~l~~L~l~g~i~--~~~~~~-l~~~l~~L~~LdLs~n~i~~~~~~---~~~~~~~~~~~~~~~---~I~~~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGKLN--AEDFRH-LRDEFPSLKVLDISNAEIKMYSGK---AGTYPNGKFYIYMAN---FVPAYAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEEEC--HHHHHH-HHHSCTTCCEEEEEEEEECCEEES---SSSSGGGCCEEECTT---EECTTTTEEEET
T ss_pred hCceeEEEEecccc--HHHHHH-HHHhhccCeEEecCcceeEEecCc---ccccccccccccccc---ccCHHHhccccc
Confidence 45688888888422 123333 233378999999999998722111 122233455555555 44455553
Q ss_pred -----CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcC---CccCCccccc
Q 036984 80 -----TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQL---TESISSSPLM 151 (603)
Q Consensus 80 -----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~ 151 (603)
+++|+.|++.+ .++.+.+.+|.++++|+.+++++|.+..+.+.+|.++.++..+.+..+.. ...+....|.
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 68899999988 78887778899999999999999988878888888888777777655321 1123334566
Q ss_pred CCCCCc-EEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCC-CCcccccEEeccCCCCCCCcChhhccCCCC
Q 036984 152 LLTSIE-ELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSL-TPKFQLTSISLSGYRDDGTFPKFLYHQHDL 229 (603)
Q Consensus 152 ~l~~L~-~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 229 (603)
.+..|+ .+.+.....-....+.......++..+....... ...+..+ ..+.+|+.+++.+|.++......|.++++|
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLD-NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCC-HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeec-HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 677776 4444332211000000011112222222211100 0000000 014589999999999988888899999999
Q ss_pred CEEEcCCCcccCCCCCCCccccccCCcc-EEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcccCCcccc
Q 036984 230 KNADLSHLNLSGEFPNWLMPIHCLQKLA-TLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWID 308 (603)
Q Consensus 230 ~~L~L~~n~i~~~~~~~~~~~~~l~~L~-~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~ 308 (603)
+.+++.+| +....+.. |..+++|+ .+++.+ .++ .++...|..|++|+.+++++|.+..++...| .
T Consensus 253 ~~l~l~~n-i~~I~~~a---F~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF--------~ 318 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRV---FSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELF--------G 318 (329)
T ss_dssp CEEECCTT-CCEECTTT---TTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTT--------C
T ss_pred CEEECCcc-cceehHHH---hhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhh--------c
Confidence 99999998 65444444 77899999 999998 776 7888889999999999999998887775444 4
Q ss_pred CCCCCCEEec
Q 036984 309 RLPQISYLLL 318 (603)
Q Consensus 309 ~l~~L~~L~L 318 (603)
++++|+.++.
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 5899998874
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=8.9e-16 Score=136.59 Aligned_cols=86 Identities=22% Similarity=0.223 Sum_probs=45.0
Q ss_pred cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCC-cCCcCCCCCCEEeCCCCcCcccCC----CccCCCCC
Q 036984 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP-ITFSNLKQIESLDLSYNLLHGKIP----QLIVLTTL 473 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~l~~L 473 (603)
+++|+.|++++|.+++.+|..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++++..+ .+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 4455555555555554444444445555555555555553211 445555555555555555554433 34455555
Q ss_pred CceecccCccc
Q 036984 474 AVFRVAYNNLS 484 (603)
Q Consensus 474 ~~L~l~~N~l~ 484 (603)
++|++++|.+.
T Consensus 150 ~~L~l~~n~~~ 160 (168)
T 2ell_A 150 TYLDGYDREDQ 160 (168)
T ss_dssp CEETTEETTSC
T ss_pred cEecCCCCChh
Confidence 55555555554
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=4.9e-18 Score=180.43 Aligned_cols=202 Identities=16% Similarity=0.190 Sum_probs=137.9
Q ss_pred cccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCc-c----cccCCcCcccCCccccCCCCCCEEe-ccCCcCc
Q 036984 251 HCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAF-N----DLSYNRLQGSIPNWIDRLPQISYLL-LANNYIE 324 (603)
Q Consensus 251 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-~----~l~~~~~~~~~~~~l~~l~~L~~L~-L~~n~l~ 324 (603)
..++.|+.|++++|.+. .+|..+.. +++|+.|++++|.. . .+......+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 34677788888888876 77777665 77788877765531 0 0011123345566666677777777 5555332
Q ss_pred ccCCc-----cccC--CCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhh
Q 036984 325 GEIPA-----QLCQ--LKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQ 397 (603)
Q Consensus 325 ~~~~~-----~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (603)
..... .+.. ...|+.|++++|.+++ +|. +.
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~------------------------------------------~~ 460 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH------------------------------------------LE 460 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC------------------------------------------GG
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC------------------------------------------cc
Confidence 11000 0000 1358889999998873 331 34
Q ss_pred hcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccC-C-CccCCCCCCc
Q 036984 398 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKI-P-QLIVLTTLAV 475 (603)
Q Consensus 398 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~-~~~~l~~L~~ 475 (603)
.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+|++ +| .+.++++|+.|++++|++++.+ | .+..+++|+.
T Consensus 461 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 5778999999999998 778888899999999999999985 56 7888999999999999998775 6 7888999999
Q ss_pred eecccCcccccCCCc---ccccCCCCcc
Q 036984 476 FRVAYNNLSGKIPDR---VAQFSTFEED 500 (603)
Q Consensus 476 L~l~~N~l~~~~p~~---~~~l~~l~~~ 500 (603)
|++++|++++..|.. +..++.++.+
T Consensus 538 L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 538 LNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred EEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 999999998765532 1224555544
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=4.4e-14 Score=143.37 Aligned_cols=82 Identities=9% Similarity=0.102 Sum_probs=46.9
Q ss_pred CCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEE
Q 036984 80 TTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEEL 159 (603)
Q Consensus 80 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L 159 (603)
+..++.+.+.++ ++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+. .+...+|..+.+|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCee
Confidence 455666665543 444445556553 5666666554 554555566663 566666654 444 3454466666666666
Q ss_pred EccCceee
Q 036984 160 ILSNNHFQ 167 (603)
Q Consensus 160 ~l~~n~~~ 167 (603)
++.+|.++
T Consensus 186 ~l~~n~l~ 193 (401)
T 4fdw_A 186 DLSKTKIT 193 (401)
T ss_dssp ECTTSCCS
T ss_pred ecCCCcce
Confidence 66665443
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=6.3e-15 Score=133.95 Aligned_cols=131 Identities=17% Similarity=0.250 Sum_probs=113.4
Q ss_pred cEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEecc
Q 036984 35 RLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYID 113 (603)
Q Consensus 35 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (603)
+.++++++.++.. +..+ .++|++|++++|.++.++ ..|. +++|++|++++|.+++..+..|.++++|++|+|+
T Consensus 13 ~~l~~~~~~l~~i---p~~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVL---PKGI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSC---CSCC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCcC---CCCC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 5889999988752 3333 368999999999999887 4555 9999999999999999888899999999999999
Q ss_pred CCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCc
Q 036984 114 NNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISL 172 (603)
Q Consensus 114 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 172 (603)
+|.+++..+.+|.++++|++|+|++|.++ .++...|..+++|++|++++|++.+....
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 99999888889999999999999999998 56666789999999999999999865543
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=3.4e-16 Score=171.58 Aligned_cols=143 Identities=24% Similarity=0.268 Sum_probs=75.4
Q ss_pred CCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeE
Q 036984 303 IPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSY 382 (603)
Q Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (603)
.+..+..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--------------------------- 266 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI--------------------------- 266 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG---------------------------
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh---------------------------
Confidence 3445555666666666666665 34444445666666666666665 444332
Q ss_pred EecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcc
Q 036984 383 FSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHG 462 (603)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 462 (603)
..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.|+ .+|..|.++++|+.|+|++|++++
T Consensus 267 --------------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 267 --------------KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp --------------GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred --------------hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 22456666666666666 45556666666666666666665 455556666666666666666665
Q ss_pred cCC-CccCC-CCCCceecccCcccccCCCc
Q 036984 463 KIP-QLIVL-TTLAVFRVAYNNLSGKIPDR 490 (603)
Q Consensus 463 ~~~-~~~~l-~~L~~L~l~~N~l~~~~p~~ 490 (603)
.+| .+... ..+..+++++|.+++.+|..
T Consensus 331 ~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 331 QFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 554 22111 11122445555555544443
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=1.6e-16 Score=174.24 Aligned_cols=212 Identities=18% Similarity=0.172 Sum_probs=101.2
Q ss_pred cccEEeccCCCCCCCcChhhccCCCCCEEEcCCCcccC---------CCCCCCccccccCCccEEEccCccccccCChhh
Q 036984 204 QLTSISLSGYRDDGTFPKFLYHQHDLKNADLSHLNLSG---------EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEI 274 (603)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~---------~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~ 274 (603)
.++.+++..+.+... +.. .++.++|+.+.+.+ ..+.. +..++.|+.|+|++|.+. .+|..+
T Consensus 174 ~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~---~~~l~~L~~L~Ls~n~l~-~l~~~~ 243 (727)
T 4b8c_D 174 LTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDS---KYDDQLWHALDLSNLQIF-NISANI 243 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGG
T ss_pred ccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhh---hccCCCCcEEECCCCCCC-CCChhh
Confidence 577777777766542 222 23334444443332 22332 556778888888888887 777777
Q ss_pred hhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChh
Q 036984 275 GTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFC 354 (603)
Q Consensus 275 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 354 (603)
+. +++|+.|+|++|.+. .+|..++.+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..
T Consensus 244 ~~-l~~L~~L~Ls~N~l~---------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~ 311 (727)
T 4b8c_D 244 FK-YDFLTRLYLNGNSLT---------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE 311 (727)
T ss_dssp GG-CCSCSCCBCTTSCCS---------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred cC-CCCCCEEEeeCCcCc---------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh
Confidence 74 778888777777654 44666777888888888888887 56777888888888888888775 44432
Q ss_pred hhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCc-CCEEeccc
Q 036984 355 LVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTR-IRALNLSH 433 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~Ls~ 433 (603)
+..+++|+.|+|++|.+++.+|..+..+.. +..|+|++
T Consensus 312 -----------------------------------------~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~ 350 (727)
T 4b8c_D 312 -----------------------------------------FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRD 350 (727)
T ss_dssp -----------------------------------------TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhcc
Confidence 233667888888888888777776654422 23467888
Q ss_pred ccccccCCcCCcCCCCCCEEeCCCC--------cCcccCC-CccCCCCCCceecccCccc
Q 036984 434 NNLTGTIPITFSNLKQIESLDLSYN--------LLHGKIP-QLIVLTTLAVFRVAYNNLS 484 (603)
Q Consensus 434 N~l~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~~-~~~~l~~L~~L~l~~N~l~ 484 (603)
|.+++.+|.. |+.|++++| .+.+..+ .+..+..+....+++|-+.
T Consensus 351 N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 351 NRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCCCCCCCCC-----------------------------------------------CCC
T ss_pred CcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 8887766643 455666666 2222222 3344555566666777664
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=3e-15 Score=133.14 Aligned_cols=135 Identities=21% Similarity=0.207 Sum_probs=114.6
Q ss_pred HhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCC
Q 036984 29 ELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLL 107 (603)
Q Consensus 29 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (603)
..+++|++|++++|.++.. ..+..+..+++|++|++++|.++.+ ..+. +++|++|++++|.+.+..|..+..+++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~-~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDG-KIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTT-BCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChh-hHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 3468899999999998732 2345678999999999999999988 5555 9999999999999998788888889999
Q ss_pred cEEeccCCCCccCcC-ccCCCCCCCCEEEcccCcCCccCCc---ccccCCCCCcEEEccCceee
Q 036984 108 RELYIDNNDLSGSLP-LCLTNLTSLQVLDVSYNQLTESISS---SPLMLLTSIEELILSNNHFQ 167 (603)
Q Consensus 108 ~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~~l~~L~~L~l~~n~~~ 167 (603)
++|++++|.+++..+ ..+.++++|++|++++|.+++ .+. ..+..+++|++|++++|.+.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999999986432 789999999999999999985 443 36889999999999999765
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.2e-15 Score=131.03 Aligned_cols=81 Identities=21% Similarity=0.251 Sum_probs=40.2
Q ss_pred cccceEEECcCCCCcccCchhccCcCcCCEEeccccccccc-CCcCCcCCCCCCEEeCCCCcCcccCC----CccCCCCC
Q 036984 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT-IPITFSNLKQIESLDLSYNLLHGKIP----QLIVLTTL 473 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~l~~L 473 (603)
+++|+.|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ .+..+++|
T Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 44455555555555544444444455555555555555532 12445555555555555555554333 24445555
Q ss_pred Cceecc
Q 036984 474 AVFRVA 479 (603)
Q Consensus 474 ~~L~l~ 479 (603)
+.|+++
T Consensus 143 ~~L~l~ 148 (149)
T 2je0_A 143 TYLDGY 148 (149)
T ss_dssp CEETTB
T ss_pred ccccCC
Confidence 555543
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=1.5e-13 Score=139.49 Aligned_cols=248 Identities=10% Similarity=0.134 Sum_probs=147.6
Q ss_pred cccCCCCCCCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCC
Q 036984 52 QGFCQLVHLQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSL 131 (603)
Q Consensus 52 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 131 (603)
.+|.++ +|+.+.+..+ ++.+...+|.-.+|+.+.+.+ .+..+.+.+|.++++|+.+++++|+++.+...+|. ..+|
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L 205 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI 205 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence 345443 4555555444 555555555533455555554 44444445555555555555555555544444444 3555
Q ss_pred CEEEcccCcCCccCCcccccCCCCCcEEEccCceeeeecCccccCCCCCCceeeccceeeeccCCCCCCCcccccEEecc
Q 036984 132 QVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIPISLEPLSNLSKLKAFNGEIYLETESHYNSLTPKFQLTSISLS 211 (603)
Q Consensus 132 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 211 (603)
+.+.+..+ +. .++..+|.++++|+.+.+..+- + .+. ... |.. .+|+.+.+.
T Consensus 206 ~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l-~-~I~---------------------~~a---F~~-~~L~~i~lp 256 (401)
T 4fdw_A 206 EEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENV-S-TIG---------------------QEA---FRE-SGITTVKLP 256 (401)
T ss_dssp SEEECCTT-CC-EECTTTTTTCTTCCCEECCTTC-C-EEC---------------------TTT---TTT-CCCSEEEEE
T ss_pred CEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCc-c-Ccc---------------------ccc---ccc-CCccEEEeC
Confidence 55555533 33 3444455555555555555431 1 111 111 111 356666663
Q ss_pred CCCCCCCcChhhccCCCCCEEEcCCCcccC----CCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecC
Q 036984 212 GYRDDGTFPKFLYHQHDLKNADLSHLNLSG----EFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLS 287 (603)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~ 287 (603)
+.+.......|..+++|+.+++.++.+.. .++.. .|..+++|+.+++. +.+. .++...|..|++|+.+.+.
T Consensus 257 -~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 257 -NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp -TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT--TTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEEEEC
T ss_pred -CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH--HhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEEEEC
Confidence 33444456778888888888888776531 12222 26778888988888 4466 7777888888889988885
Q ss_pred CCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccCCccccCCC-CCCEEecCCCcC
Q 036984 288 RNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLK-EVRLIDLSHNNL 347 (603)
Q Consensus 288 ~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l 347 (603)
.+ +..++. ..|.++ +|+.+++.+|.+....+..|.+++ .++.|.+..+.+
T Consensus 332 ~~-l~~I~~--------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 332 AN-VTQINF--------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TT-CCEECT--------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cc-ccEEcH--------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 54 455443 344457 888999988888777777787774 678888877654
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=1.1e-13 Score=141.15 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=52.3
Q ss_pred hhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCC
Q 036984 396 VQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLA 474 (603)
Q Consensus 396 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~ 474 (603)
+..+.+|+.+.+.++ ++.....+|.++++|+.++|.++ ++.+...+|.++.+|+.+++..+ ++.... .|..+++|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 344566666666544 44445556777777777777644 55455667777777777777665 553333 677777777
Q ss_pred ceecccC
Q 036984 475 VFRVAYN 481 (603)
Q Consensus 475 ~L~l~~N 481 (603)
.+++..+
T Consensus 370 ~i~lp~~ 376 (394)
T 4fs7_A 370 KVELPKR 376 (394)
T ss_dssp EEEEEGG
T ss_pred EEEECCC
Confidence 7777544
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.3e-14 Score=130.25 Aligned_cols=114 Identities=22% Similarity=0.229 Sum_probs=101.4
Q ss_pred cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCcee
Q 036984 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFR 477 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~ 477 (603)
+++|+.|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+ .+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 3689999999999997777778999999999999999997777788999999999999999997666 578899999999
Q ss_pred cccCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984 478 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 478 l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~ 512 (603)
+++|++++..+..+..++.++.+++++|++.|.++
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999997666667889999999999999999443
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=5e-14 Score=126.35 Aligned_cols=130 Identities=22% Similarity=0.222 Sum_probs=108.5
Q ss_pred CcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcEEec
Q 036984 34 LRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRELYI 112 (603)
Q Consensus 34 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (603)
.+.++++++.+... +. .-.++|++|++++|.++.+++..|. +++|++|++++|.+++..+..|..+++|++|++
T Consensus 9 ~~~l~~~~~~l~~~---p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV---PT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSC---CT--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCccC---CC--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 46788888887652 22 2347899999999999988888877 899999999999999877777889999999999
Q ss_pred cCCCCccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCceeeee
Q 036984 113 DNNDLSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNNHFQIP 169 (603)
Q Consensus 113 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 169 (603)
++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++|++.+.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeecc
Confidence 999999777777889999999999999998 46665778899999999999988753
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=6.2e-15 Score=128.22 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=109.1
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCcE
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLRE 109 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (603)
++++++|++++|.++.. ..+..+..+++|++|++++|.++++ ..+. +++|++|++++|.+++..|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG-KLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTT-BCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChh-HHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 57899999999998721 2345788999999999999999988 5555 999999999999999878888888999999
Q ss_pred EeccCCCCccC-cCccCCCCCCCCEEEcccCcCCccCCc---ccccCCCCCcEEEccC
Q 036984 110 LYIDNNDLSGS-LPLCLTNLTSLQVLDVSYNQLTESISS---SPLMLLTSIEELILSN 163 (603)
Q Consensus 110 L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~~l~~L~~L~l~~ 163 (603)
|++++|.+++. .+..+.++++|++|++++|.+++ .+. ..+..+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence 99999999863 34789999999999999999985 443 3688899999998863
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=4.7e-14 Score=125.38 Aligned_cols=109 Identities=26% Similarity=0.256 Sum_probs=93.9
Q ss_pred cceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecc
Q 036984 401 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVA 479 (603)
Q Consensus 401 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~ 479 (603)
+.+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|++++|++++..+ .+..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999998 5665554 789999999999998888889999999999999999996666 57889999999999
Q ss_pred cCcccccCCCcccccCCCCcccccCCcCCCCCC
Q 036984 480 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLYGQP 512 (603)
Q Consensus 480 ~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~~ 512 (603)
+|++++..+..+..++.++.+++++||+.|.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998777778899999999999999999543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=2.7e-14 Score=127.95 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=50.0
Q ss_pred cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCc--CCcCCCCCCEEeCCCCcCcccCCC----ccCCCC
Q 036984 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPI--TFSNLKQIESLDLSYNLLHGKIPQ----LIVLTT 472 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----~~~l~~ 472 (603)
+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|+.|++++|+++...+. +..+++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~ 141 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ 141 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCc
Confidence 455666666666666444444466666666666666665 3333 556666666666666666632222 555666
Q ss_pred CCceecccCccc
Q 036984 473 LAVFRVAYNNLS 484 (603)
Q Consensus 473 L~~L~l~~N~l~ 484 (603)
|+.|++++|...
T Consensus 142 L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 142 VRVLDFQKVKLK 153 (176)
T ss_dssp CSEETTEECCHH
T ss_pred cceeCCCcCCHH
Confidence 666666666554
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=9.1e-13 Score=134.32 Aligned_cols=219 Identities=10% Similarity=0.039 Sum_probs=145.4
Q ss_pred hhccCCCCCEEEcCCCcccCCCCCCCccccccCCccEEEccCccccccCChhhhhcCCCCcEEecCCCCcccccCCcCcc
Q 036984 222 FLYHQHDLKNADLSHLNLSGEFPNWLMPIHCLQKLATLDVSNNFFQGHIPVEIGTYLPGLMHLNLSRNAFNDLSYNRLQG 301 (603)
Q Consensus 222 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 301 (603)
.|..+++|+.+.+..+.. .++.. .+..+.+|+.+++..+ +. .++...|..++.|+.+.+..+.. .+
T Consensus 157 aF~~c~~L~~i~l~~~~~--~I~~~--~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~-~i------- 222 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSME--TLHNG--LFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLY-YL------- 222 (394)
T ss_dssp TTTTCTTCCEEECCTTCC--EECTT--TTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCC-EE-------
T ss_pred hhcccCCCcEEecCCccc--eeccc--cccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCce-Ee-------
Confidence 455566666666654321 12221 1556677777777655 43 56666666677777766655432 11
Q ss_pred cCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCee
Q 036984 302 SIPNWIDRLPQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALS 381 (603)
Q Consensus 302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (603)
........+|+.+.+... ++.+...+|..+..|+.+.+..+...
T Consensus 223 --~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~--------------------------------- 266 (394)
T 4fs7_A 223 --GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR--------------------------------- 266 (394)
T ss_dssp --CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE---------------------------------
T ss_pred --ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce---------------------------------
Confidence 112223467788877643 33456677888888888888766442
Q ss_pred EEecCCCCCCcchhhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCc
Q 036984 382 YFSPNGSPMGKEETVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLH 461 (603)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 461 (603)
.....+..+..++.+....+.+ ...+|..+.+|+.+.+.++ ++.+...+|.++.+|+.+++.++ ++
T Consensus 267 ---------i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~ 332 (394)
T 4fs7_A 267 ---------IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE 332 (394)
T ss_dssp ---------ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred ---------eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence 1123344566777777665433 3356888999999999876 66577788999999999999865 66
Q ss_pred ccCC-CccCCCCCCceecccCcccccCCCcccccCCCCcccccCC
Q 036984 462 GKIP-QLIVLTTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGN 505 (603)
Q Consensus 462 ~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn 505 (603)
.... .|..+++|+.+++..+ +...-...|..+..|+.+.+..+
T Consensus 333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 3434 7899999999999877 66566677888888988877554
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=5e-14 Score=126.20 Aligned_cols=129 Identities=21% Similarity=0.175 Sum_probs=102.7
Q ss_pred cCCCcEEEccCCcCCCCCCCccccCCC-CCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCCCCcCCchhhcCCCCCc
Q 036984 31 MASLRLLSLSYSRLNKNTILDQGFCQL-VHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNKLTRNFPLGLCELVLLR 108 (603)
Q Consensus 31 ~~~L~~L~Ls~n~i~~~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (603)
+++|++|++++|.++.. + .+..+ ++|++|++++|.++++ ..+. +++|++|++++|.+++..+..+..+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i---~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI---E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCSC---C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCchh---H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 67889999999988752 2 34444 4899999999998887 4455 88999999999999886656668899999
Q ss_pred EEeccCCCCccCcCc--cCCCCCCCCEEEcccCcCCccCCcc---cccCCCCCcEEEccCceee
Q 036984 109 ELYIDNNDLSGSLPL--CLTNLTSLQVLDVSYNQLTESISSS---PLMLLTSIEELILSNNHFQ 167 (603)
Q Consensus 109 ~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~---~~~~l~~L~~L~l~~n~~~ 167 (603)
+|++++|.++. .|. .+.++++|++|++++|.++ .+|.. .+..+++|+.|++++|...
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999874 554 7888999999999999987 45552 3788899999999888765
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1.4e-13 Score=122.71 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=89.2
Q ss_pred eEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccC
Q 036984 403 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYN 481 (603)
Q Consensus 403 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N 481 (603)
+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|++++|+|++..+ .+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67899999987 6666554 789999999999998888889999999999999999996555 4678999999999999
Q ss_pred cccccCCCcccccCCCCcccccCCcCCCCC
Q 036984 482 NLSGKIPDRVAQFSTFEEDSYEGNPFLYGQ 511 (603)
Q Consensus 482 ~l~~~~p~~~~~l~~l~~~~l~gn~~~c~~ 511 (603)
++++..+..+..++.++.+++++|++.|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 999766666888899999999999998843
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=8.6e-13 Score=117.14 Aligned_cols=106 Identities=26% Similarity=0.251 Sum_probs=73.4
Q ss_pred CCEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccC
Q 036984 60 LQELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYN 139 (603)
Q Consensus 60 L~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 139 (603)
.+++++++|.++.++... .++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 356677777776666544 366777777777777766667777777777777777777666666777777777777777
Q ss_pred cCCccCCcccccCCCCCcEEEccCceeee
Q 036984 140 QLTESISSSPLMLLTSIEELILSNNHFQI 168 (603)
Q Consensus 140 ~i~~~~~~~~~~~l~~L~~L~l~~n~~~~ 168 (603)
.+++ ++...|..+++|++|++++|++.+
T Consensus 89 ~l~~-~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKS-IPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCC-CCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCE-eCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7763 444467777777777777777653
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.4e-12 Score=116.13 Aligned_cols=105 Identities=28% Similarity=0.320 Sum_probs=76.8
Q ss_pred CEEEccCCcCCCCccCcccCCCCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEcccCc
Q 036984 61 QELYIRDNDLRDSLLGAWQTTSLQELNVASNKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQ 140 (603)
Q Consensus 61 ~~L~Ls~n~i~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 140 (603)
+.+++++|.++.++... .++|++|++++|++.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 56777777777766654 3677777777777777667777777778888888887776655667777788888888887
Q ss_pred CCccCCcccccCCCCCcEEEccCceeee
Q 036984 141 LTESISSSPLMLLTSIEELILSNNHFQI 168 (603)
Q Consensus 141 i~~~~~~~~~~~l~~L~~L~l~~n~~~~ 168 (603)
++ .++...+..+++|++|++++|++..
T Consensus 93 l~-~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LK-SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cc-eeCHHHhccccCCCEEEeCCCCccc
Confidence 77 4555467777788888888877653
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.4e-15 Score=139.29 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=31.4
Q ss_pred cccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCC-cCCcCCCCCCEEeCCCCcCccc
Q 036984 399 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP-ITFSNLKQIESLDLSYNLLHGK 463 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~ 463 (603)
+++|+.|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++.
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 3455555555555553 22 34555555555555555553221 2344555555555555555443
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.40 E-value=3e-11 Score=123.08 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=71.3
Q ss_pred cccCCCC-CCCEEEccCCcCCCCccCccc-CCCCCEEEccCCC---CCcCCchhhcCCCCCcEEeccCCCCccCcCccCC
Q 036984 52 QGFCQLV-HLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNK---LTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLT 126 (603)
Q Consensus 52 ~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 126 (603)
.+|.++. .|+.+.+..+ ++.|...+|. +.+|+.+.+..+. ++.+...+|.++.+|+.+.+..+ ++.+...+|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4566664 4777777653 7777777777 7777777776653 55555567777777777766654 3435556677
Q ss_pred CCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccCc
Q 036984 127 NLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSNN 164 (603)
Q Consensus 127 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n 164 (603)
++.+|+.+.+..+ +. .+....|..+.+|+.+.+..+
T Consensus 135 ~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT
T ss_pred hhcccccccccce-ee-eecccceecccccccccccce
Confidence 7777777777543 22 345556777777777776554
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=7.9e-15 Score=134.20 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=103.8
Q ss_pred CCccEEEccCccccccCCh------hhhhcCCCCcEEecCCCCcccccCCcCcccCCccccCCCCCCEEeccCCcCcccC
Q 036984 254 QKLATLDVSNNFFQGHIPV------EIGTYLPGLMHLNLSRNAFNDLSYNRLQGSIPNWIDRLPQISYLLLANNYIEGEI 327 (603)
Q Consensus 254 ~~L~~L~Ls~n~~~~~~~~------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (603)
+.++.++++.+.+.+.+|. .+. .+++|+.|++++|.+.++ | .+..+++|++|++++|.++ .+
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~l---------~-~~~~l~~L~~L~l~~n~l~-~l 85 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEKI---------S-SLSGMENLRILSLGRNLIK-KI 85 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESCC---------C-CHHHHTTCCEEEEEEEEEC-SC
T ss_pred ccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCccc---------c-ccccCCCCCEEECCCCCcc-cc
Confidence 3444444444444443332 333 377788877777766532 3 4556788888888888887 45
Q ss_pred CccccCCCCCCEEecCCCcCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEEEC
Q 036984 328 PAQLCQLKEVRLIDLSHNNLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGIDL 407 (603)
Q Consensus 328 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 407 (603)
|..+..+++|+.|++++|++++ +| .+..+++|+.|++
T Consensus 86 ~~~~~~~~~L~~L~L~~N~l~~-l~------------------------------------------~~~~l~~L~~L~l 122 (198)
T 1ds9_A 86 ENLDAVADTLEELWISYNQIAS-LS------------------------------------------GIEKLVNLRVLYM 122 (198)
T ss_dssp SSHHHHHHHCSEEEEEEEECCC-HH------------------------------------------HHHHHHHSSEEEE
T ss_pred cchhhcCCcCCEEECcCCcCCc-CC------------------------------------------ccccCCCCCEEEC
Confidence 6666777888888888888863 11 2445778889999
Q ss_pred cCCCCcccCc-hhccCcCcCCEEecccccccccCCcC----------CcCCCCCCEEeCCCCcCc
Q 036984 408 SCNKLTGEIP-TQIGYLTRIRALNLSHNNLTGTIPIT----------FSNLKQIESLDLSYNLLH 461 (603)
Q Consensus 408 s~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~ 461 (603)
++|.+++..+ ..+..+++|++|++++|.+++..|.. +..+++|+.|| +|.++
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 9998885433 46888999999999999998765543 66778888877 66655
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.33 E-value=1.4e-10 Score=118.07 Aligned_cols=92 Identities=10% Similarity=0.096 Sum_probs=67.7
Q ss_pred CCCCccCccc-CC-CCCEEEccCCCCCcCCchhhcCCCCCcEEeccCCC---CccCcCccCCCCCCCCEEEcccCcCCcc
Q 036984 70 LRDSLLGAWQ-TT-SLQELNVASNKLTRNFPLGLCELVLLRELYIDNND---LSGSLPLCLTNLTSLQVLDVSYNQLTES 144 (603)
Q Consensus 70 i~~~~~~~~~-~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 144 (603)
++.|...+|. ++ .|+.+.+-.+ ++.+...+|.++.+|+.+.+..+. ++.+...+|.++.+|+.+.+..+ ++ .
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-E 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-E
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-e
Confidence 5677778887 54 5888888654 666677788888888888887763 55566677888888888777654 44 4
Q ss_pred CCcccccCCCCCcEEEccCc
Q 036984 145 ISSSPLMLLTSIEELILSNN 164 (603)
Q Consensus 145 ~~~~~~~~l~~L~~L~l~~n 164 (603)
+...+|..+.+|+.+.+..+
T Consensus 128 I~~~aF~~c~~L~~i~lp~~ 147 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG 147 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT
T ss_pred ehhhhhhhhcccccccccce
Confidence 55557888888888887654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=7.2e-12 Score=125.43 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=49.4
Q ss_pred EECcCC-CCcccCchhccCcCcCCEEeccc-ccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCCceecccC
Q 036984 405 IDLSCN-KLTGEIPTQIGYLTRIRALNLSH-NNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLAVFRVAYN 481 (603)
Q Consensus 405 L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~N 481 (603)
++++++ +++ .+|. +..+++|++|+|++ |.|++..+..|.++++|+.|+|++|+|++.+| .|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 444 2343 55555555555553 55554444445555555555555555554444 3444555555555555
Q ss_pred cccccCCCcccccCCCCcccccCCcCCCC
Q 036984 482 NLSGKIPDRVAQFSTFEEDSYEGNPFLYG 510 (603)
Q Consensus 482 ~l~~~~p~~~~~l~~l~~~~l~gn~~~c~ 510 (603)
++++..|..+..++ ++.+++.+|++.|.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 55533333333332 45555555555553
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=1.9e-14 Score=144.59 Aligned_cols=141 Identities=21% Similarity=0.171 Sum_probs=82.1
Q ss_pred HHHHhcCCCcEEEccCCcCCCCCC--CccccC-CCCCCCEEEccCCcCCCCccCccc--CCCCCEEEccCCCCCcCCchh
Q 036984 26 IVSELMASLRLLSLSYSRLNKNTI--LDQGFC-QLVHLQELYIRDNDLRDSLLGAWQ--TTSLQELNVASNKLTRNFPLG 100 (603)
Q Consensus 26 ~~~~~~~~L~~L~Ls~n~i~~~~~--~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~ 100 (603)
++...++.|+.|+|++|.++.... +...+. ..++|++|+|++|.+++.....+. +++|++|+|++|.++......
T Consensus 66 l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 66 FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 344556788888888888764211 111222 336788888888877654443333 567778888888776543333
Q ss_pred h-----cCCCCCcEEeccCCCCccC----cCccCCCCCCCCEEEcccCcCCccC----CcccccCCCCCcEEEccCceee
Q 036984 101 L-----CELVLLRELYIDNNDLSGS----LPLCLTNLTSLQVLDVSYNQLTESI----SSSPLMLLTSIEELILSNNHFQ 167 (603)
Q Consensus 101 ~-----~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~~l~~L~~L~l~~n~~~ 167 (603)
+ ...++|++|+|++|.++.. ++.++..+++|++|+|++|.+++.. +. .+...++|++|++++|.++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCC
Confidence 3 2356677777777776532 2233455666777777777665311 11 3344455666666555543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=2.3e-13 Score=136.78 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=5.9
Q ss_pred CCCCEEeCCCCcCc
Q 036984 448 KQIESLDLSYNLLH 461 (603)
Q Consensus 448 ~~L~~L~Ls~N~l~ 461 (603)
++|++||+++|.|+
T Consensus 239 ~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 239 PSLELLHLYFNELS 252 (372)
T ss_dssp SSCCEEECTTSSCC
T ss_pred CCCCEEeccCCCCC
Confidence 34444444444443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=7.8e-11 Score=117.85 Aligned_cols=105 Identities=26% Similarity=0.247 Sum_probs=69.0
Q ss_pred EEEccCC-cCCCCccCccc-CCCCCEEEccC-CCCCcCCchhhcCCCCCcEEeccCCCCccCcCccCCCCCCCCEEEccc
Q 036984 62 ELYIRDN-DLRDSLLGAWQ-TTSLQELNVAS-NKLTRNFPLGLCELVLLRELYIDNNDLSGSLPLCLTNLTSLQVLDVSY 138 (603)
Q Consensus 62 ~L~Ls~n-~i~~~~~~~~~-~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 138 (603)
.++++++ +++.+|. +. +++|++|+|++ |.+.++.+..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3466665 6666655 43 66677777765 677766666677777777777777777766666677777777777777
Q ss_pred CcCCccCCcccccCCCCCcEEEccCceeeeec
Q 036984 139 NQLTESISSSPLMLLTSIEELILSNNHFQIPI 170 (603)
Q Consensus 139 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 170 (603)
|+++ .+|...+..++ |+.|++.+|.+.+..
T Consensus 90 N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp SCCS-CCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred Cccc-eeCHHHcccCC-ceEEEeeCCCccCCC
Confidence 7776 35543555444 777777777766443
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=1.4e-08 Score=102.65 Aligned_cols=63 Identities=10% Similarity=0.142 Sum_probs=40.0
Q ss_pred hhhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCC
Q 036984 395 TVQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYN 458 (603)
Q Consensus 395 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 458 (603)
.|..+++|+.+.+.++.++.....+|.++++|+.+.|.++ ++.+...+|.++.+|+.+.+..+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 3445566666666666666555566777777777777644 55455566777777777777554
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.05 E-value=2e-08 Score=101.65 Aligned_cols=84 Identities=10% Similarity=0.086 Sum_probs=55.1
Q ss_pred hhhcccceEEECcCCCCcccCchhccCcCcCCEEecccccccccCCcCCcCCCCCCEEeCCCCcCcccCC-CccCCCCCC
Q 036984 396 VQILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLKQIESLDLSYNLLHGKIP-QLIVLTTLA 474 (603)
Q Consensus 396 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~ 474 (603)
+..+.+|+.+.+..+ +......+|.++++|+.+.+.++.++.+...+|.++.+|+.+++..+ ++.... .|..+++|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 444556666666543 44345556777777888888777777666677777778888877654 442333 677777777
Q ss_pred ceecccC
Q 036984 475 VFRVAYN 481 (603)
Q Consensus 475 ~L~l~~N 481 (603)
.+.+..+
T Consensus 337 ~i~ip~~ 343 (379)
T 4h09_A 337 TISYPKS 343 (379)
T ss_dssp CCCCCTT
T ss_pred EEEECCc
Confidence 7777543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=7.5e-09 Score=102.89 Aligned_cols=63 Identities=13% Similarity=0.260 Sum_probs=32.9
Q ss_pred cccceEEECcCCCCcccCchhcc---CcCcCCEEeccccccccc----CCcCCcCCCCCCEEeCCCCcCc
Q 036984 399 LTSMSGIDLSCNKLTGEIPTQIG---YLTRIRALNLSHNNLTGT----IPITFSNLKQIESLDLSYNLLH 461 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 461 (603)
+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 45666666666666543322222 355666666666665542 2222234455666666666554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=2.6e-08 Score=99.07 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=32.9
Q ss_pred cccceEEECcCCCCcccC----chhccCcCcCCEEecccccccccCCcCCcC-CCCCCEEeCCCCc
Q 036984 399 LTSMSGIDLSCNKLTGEI----PTQIGYLTRIRALNLSHNNLTGTIPITFSN-LKQIESLDLSYNL 459 (603)
Q Consensus 399 l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~ 459 (603)
++.|+.|+|+.|.+++.. +..+..+++|+.|+|++|.|++.....+.. + ..++|++++.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 456666777666666432 223345567777777777666433332322 1 3456777665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=2e-08 Score=90.01 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=19.9
Q ss_pred cCCCCCCEEeccCC-cCccc----CCccccCCCCCCEEecCCCcCc
Q 036984 308 DRLPQISYLLLANN-YIEGE----IPAQLCQLKEVRLIDLSHNNLS 348 (603)
Q Consensus 308 ~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 348 (603)
...+.|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 33455555555555 44322 2223344455555555555554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.47 E-value=7.2e-08 Score=90.73 Aligned_cols=66 Identities=24% Similarity=0.241 Sum_probs=32.6
Q ss_pred HhcCCCcEEEccCCcCCCCCCCccccCCCCCCCEEEccCCcCCCCcc-Cccc-CCCCCEEEccCCCCCc
Q 036984 29 ELMASLRLLSLSYSRLNKNTILDQGFCQLVHLQELYIRDNDLRDSLL-GAWQ-TTSLQELNVASNKLTR 95 (603)
Q Consensus 29 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~-~~~L~~L~Ls~n~l~~ 95 (603)
+.+++|+.|+|++|++++...++..+..+++|+.|+|++|.++++.. ..+. + +|++|++++|.+.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 34566666666666665432223334455666666666665554411 1111 1 55555555555543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=3.5e-08 Score=88.43 Aligned_cols=121 Identities=12% Similarity=0.155 Sum_probs=90.3
Q ss_pred CCccccCCCCCCEEecCCC-cCccCCChhhhcccccccccCCCCCCCcCCCCCCeeEEecCCCCCCcchhhhhcccceEE
Q 036984 327 IPAQLCQLKEVRLIDLSHN-NLSGHIPFCLVNTALSEGYYDAVAPTWDHASAPALSYFSPNGSPMGKEETVQILTSMSGI 405 (603)
Q Consensus 327 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 405 (603)
+...+...+.|++|+|++| .+.......+ ...+...++|++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l-------------------------------------~~~L~~~~~L~~L 70 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKAC-------------------------------------AEALKTNTYVKKF 70 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHH-------------------------------------HHHHTTCCSCCEE
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHH-------------------------------------HHHHHhCCCcCEE
Confidence 3456677899999999999 8863211111 1223345789999
Q ss_pred ECcCCCCcccC----chhccCcCcCCEEeccccccccc----CCcCCcCCCCCCEEeC--CCCcCcccCC-----CccCC
Q 036984 406 DLSCNKLTGEI----PTQIGYLTRIRALNLSHNNLTGT----IPITFSNLKQIESLDL--SYNLLHGKIP-----QLIVL 470 (603)
Q Consensus 406 ~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~~~-----~~~~l 470 (603)
+|++|.+.+.. ...+...++|++|+|++|.|++. +...+...++|++|++ ++|.+..... .+...
T Consensus 71 ~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n 150 (185)
T 1io0_A 71 SIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN 150 (185)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC
T ss_pred ECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence 99999998543 34455668999999999999863 4566777889999999 8899985422 45567
Q ss_pred CCCCceecccCccc
Q 036984 471 TTLAVFRVAYNNLS 484 (603)
Q Consensus 471 ~~L~~L~l~~N~l~ 484 (603)
++|++|++++|.+.
T Consensus 151 ~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 151 TTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCCSSHH
T ss_pred CCcCEEeccCCCCC
Confidence 89999999999886
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=6.7e-07 Score=84.14 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=37.1
Q ss_pred hcccceEEECcCCCCcc--cCchhccCcCcCCEEecccccccccCCcCCcCCC--CCCEEeCCCCcCcccC
Q 036984 398 ILTSMSGIDLSCNKLTG--EIPTQIGYLTRIRALNLSHNNLTGTIPITFSNLK--QIESLDLSYNLLHGKI 464 (603)
Q Consensus 398 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~ 464 (603)
.+++|+.|+|++|.+++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|++++|++.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 45666666676666665 2334455666666666666666643 2222222 5666666666665443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=1e-06 Score=76.74 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=40.2
Q ss_pred CCCCEEEccCCcCCCCccCccc-CCCCCEEEccCCC-CCcCCchhhcCC----CCCcEEeccCCC-CccCcCccCCCCCC
Q 036984 58 VHLQELYIRDNDLRDSLLGAWQ-TTSLQELNVASNK-LTRNFPLGLCEL----VLLRELYIDNND-LSGSLPLCLTNLTS 130 (603)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~~-~~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-i~~~~~~~~~~l~~ 130 (603)
.+|+.||++++.+++.....+. +++|++|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3455555555555544444444 5555555555553 333222233332 245555555553 44333334445555
Q ss_pred CCEEEcccC
Q 036984 131 LQVLDVSYN 139 (603)
Q Consensus 131 L~~L~L~~n 139 (603)
|++|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=3.4e-06 Score=73.43 Aligned_cols=36 Identities=17% Similarity=0.045 Sum_probs=23.0
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCCEEecCCCc
Q 036984 311 PQISYLLLANNYIEGEIPAQLCQLKEVRLIDLSHNN 346 (603)
Q Consensus 311 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 346 (603)
.+|+.||+++|.+++..-..+.++++|+.|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 356666666666665555555666677777776664
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.50 E-value=0.00018 Score=59.59 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=18.9
Q ss_pred CCceecccCcccccCCCcccccCCCCcccccCCcCCC
Q 036984 473 LAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLY 509 (603)
Q Consensus 473 L~~L~l~~N~l~~~~p~~~~~l~~l~~~~l~gn~~~c 509 (603)
|+.|+|++|+|+..-+..+..++.++.+++++|||.|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4444444444443333334455555556666666666
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.42 E-value=4.4e-05 Score=67.74 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=8.6
Q ss_pred ccCCCCCCEEecCCCcCc
Q 036984 331 LCQLKEVRLIDLSHNNLS 348 (603)
Q Consensus 331 ~~~l~~L~~L~Ls~n~l~ 348 (603)
+..-+.|+.|+|++|++.
T Consensus 66 L~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HTTCSCCCEEECTTSCCB
T ss_pred HhhCCCcCEEEccCCCCC
Confidence 333444555555555443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.21 E-value=0.0001 Score=65.37 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=62.8
Q ss_pred hhcccceEEECcCCCCcccC----chhccCcCcCCEEeccccccccc----CCcCCcCCCCCCEEeCCCCc---Cccc--
Q 036984 397 QILTSMSGIDLSCNKLTGEI----PTQIGYLTRIRALNLSHNNLTGT----IPITFSNLKQIESLDLSYNL---LHGK-- 463 (603)
Q Consensus 397 ~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~---l~~~-- 463 (603)
..-+.|+.|+|++|.+.+.. ...+..-+.|++|+|++|.|++. +.+.+..-+.|++|+|++|. +...
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 34578999999999998543 34455668899999999999853 33446666789999998763 3322
Q ss_pred --CC-CccCCCCCCceecccCccc
Q 036984 464 --IP-QLIVLTTLAVFRVAYNNLS 484 (603)
Q Consensus 464 --~~-~~~~l~~L~~L~l~~N~l~ 484 (603)
+. .+..-++|+.|+++.|.+.
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhCCCcCeEeccCCCcc
Confidence 22 4556788888988877643
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.85 E-value=0.0024 Score=52.79 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=14.7
Q ss_pred CcEEeccCCCCccCcCccCCCCCCCCEEEcccCcC
Q 036984 107 LRELYIDNNDLSGSLPLCLTNLTSLQVLDVSYNQL 141 (603)
Q Consensus 107 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i 141 (603)
|++|+|++|+|+.+.+..|..+++|+.|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433333344444444444444433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.97 E-value=14 Score=28.18 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=5.0
Q ss_pred cCCCCCCCCEEEc
Q 036984 124 CLTNLTSLQVLDV 136 (603)
Q Consensus 124 ~~~~l~~L~~L~L 136 (603)
+|.++.+|+.+.+
T Consensus 38 aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 38 MFSGCTALEKLIL 50 (100)
T ss_dssp SSTTCTTCCCEEE
T ss_pred HHhccCCccEEEE
Confidence 3333333333333
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.70 E-value=7.6 Score=29.67 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=23.2
Q ss_pred CccCcCccCCCCCCCCEEEcccCcCCccCCcccccCCCCCcEEEccC
Q 036984 117 LSGSLPLCLTNLTSLQVLDVSYNQLTESISSSPLMLLTSIEELILSN 163 (603)
Q Consensus 117 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~ 163 (603)
++.+...+|.++.+|+.+.+-.+ ++ .+...+|..+.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 34444455555556665555543 22 23344555666666555544
No 167
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=24.44 E-value=24 Score=21.26 Aligned_cols=6 Identities=0% Similarity=0.003 Sum_probs=2.2
Q ss_pred hcchhh
Q 036984 565 YVNPYW 570 (603)
Q Consensus 565 ~~~~~~ 570 (603)
.+..|.
T Consensus 28 Li~~w~ 33 (39)
T 2l6w_A 28 LIMLWQ 33 (39)
Confidence 333333
Done!