BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036985
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 147/320 (45%), Gaps = 42/320 (13%)
Query: 86 VTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFS 145
+ EL L G++G + T N L +L LS N+ SG+IP SL +L++L L L N
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 146 GEIPASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKN 204
GEIP + G IP+ + ++L + + +N+LTGE P+ +G L+N
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 205 LYFLDASDNAISGKLPAILPT--SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLS 262
L L S+N+ SG +PA L SL+ + + N GT+P ++ + Q ++ N ++
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIA 571
Query: 263 GSVPSFVFSHPSLQQLTLSFN--QFTSIQ----------------------QPAPTNDNN 298
G ++ + ++ + N +F I+ +PT DNN
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 299 IFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIA 358
++ +D+S N L G +P + MP L L+L +N +G IP E +
Sbjct: 632 ---GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG--------DLR 680
Query: 359 PFQRLLLGGNYLFGAIPRSL 378
L L N L G IP+++
Sbjct: 681 GLNILDLSSNKLDGRIPQAM 700
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 118/246 (47%), Gaps = 18/246 (7%)
Query: 110 LETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPA-SIGXXXXXXXXXXXXXXX 168
L LDLS N F G++P + + L L LS N+FSGE+P ++
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 169 XGTIPASFNGLS-SLKRLEIQSNKLTGE-FPEL-----GSLKNLYFLDASDNAISGKLPA 221
G +P S LS SL L++ SN +G P L +L+ LY +N +GK+P
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL---QNNGFTGKIPP 412
Query: 222 ILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLT 279
L + LV + + N L GT+P SL LS L+ + L N L G +P + +L+ L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 280 LSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFT 339
L FN T +N N L + +SNN L G +P ++ + L+ L L NN F+
Sbjct: 473 LDFNDLTGEIPSGLSNCTN-----LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 340 GMIPTE 345
G IP E
Sbjct: 528 GNIPAE 533
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 126/301 (41%), Gaps = 71/301 (23%)
Query: 110 LETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXXXXXX 169
L+ LD+S N SG ++S T L L +S N F G IP
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP------------------- 265
Query: 170 GTIPASFNGLSSLKRLEIQSNKLTGEFPEL--GSLKNLYFLDASDNAISGKLPAIL--PT 225
+P L SL+ L + NK TGE P+ G+ L LD S N G +P +
Sbjct: 266 --LP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 226 SLVQISMRNNNLQGTVP-ESLKLLSYLQVVDLSHNKLSGSVPSFV--------------- 269
L +++ +NN G +P ++L + L+V+DLS N+ SG +P +
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 270 -FSHP-----------SLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGM 317
FS P +LQ+L L N FT P +N S+L+++ +S N L G
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-----CSELVSLHLSFNYLSGT 433
Query: 318 LPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRS 377
+P + + KL L L N G IP E + + L+L N L G IP
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMY--------VKTLETLILDFNDLTGEIPSG 485
Query: 378 L 378
L
Sbjct: 486 L 486
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 49/245 (20%)
Query: 91 LDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPA 150
LD +G + + N L + LSNN +G IP+ + L L L LS NSFSG IPA
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 151 SIGXXXXXXXXXXXXXXXXGTIPASF---------NGLSSLKRLEIQSNKLTGEFPELGS 201
+G GTIPA+ N ++ + + I+++ + E G+
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 202 L--------------------------------------KNLYFLDASDNAISGKLPAIL 223
L ++ FLD S N +SG +P +
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 224 PTS--LVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLS 281
+ L +++ +N++ G++P+ + L L ++DLS NKL G +P + + L ++ LS
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 282 FNQFT 286
N +
Sbjct: 713 NNNLS 717
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 137/341 (40%), Gaps = 44/341 (12%)
Query: 115 LSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXXXXXXGTIPA 174
LSN+ +GS+ L L LSRNS SG + P
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 175 SFNG---LSSLKRLEIQSNKLTGE-------FPELGSLKNLYFLDASDNAISGKLPAILP 224
+G L+SL+ L++ +N ++G G LK+L S N ISG +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVDVSRC 199
Query: 225 TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQ 284
+L + + +NN +P L S LQ +D+S NKLSG + + L+ L +S NQ
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 285 FTSIQQPAPTND-------NNIFSSQ-----------LIAVDISNNELQGMLPLFMALMP 326
F P P N F+ + L +D+S N G +P F
Sbjct: 259 FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 327 KLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSA 386
L +L+L +N F+G +P + ++ + + L L N G +P SL L
Sbjct: 319 LLESLALSSNNFSGELPMDTLLK-------MRGLKVLDLSFNEFSGELPESLTNLSASLL 371
Query: 387 NVRLADNCLYRCPFSFFFCQGAR---QKSLVECNRFTPVIP 424
+ L+ N + P CQ + Q+ ++ N FT IP
Sbjct: 372 TLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 73 GFRCDVSVSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLT 132
G R + ++ LS N+ Y G S T N + LD+S N SG IP+ + ++
Sbjct: 598 GIRSE-QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 133 RLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKL 192
L L L N SG IP +G G IP + + L+ L +++ +N L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 193 TGEFPELGSLK 203
+G PE+G +
Sbjct: 717 SGPIPEMGQFE 727
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 25/212 (11%)
Query: 80 VSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESL--------SNL 131
+ L + L L +SG++ + L LDL+ N F+G+IP ++ +N
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
Query: 132 TRLIRLGLSRNS--------------FSGEIPASIGXXXXXXXXXXXXXXXXGTIPASFN 177
R +N F G + G +F+
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 178 GLSSLKRLEIQSNKLTGEFP-ELGSLKNLYFLDASDNAISGKLPAILPT--SLVQISMRN 234
S+ L++ N L+G P E+GS+ L+ L+ N ISG +P + L + + +
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 235 NNLQGTVPESLKLLSYLQVVDLSHNKLSGSVP 266
N L G +P+++ L+ L +DLS+N LSG +P
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 170 GTIPASFNGLSSLKRLEIQSNKLTGEFP-ELGSLKNLYFLDASDNAISGKLPAILP--TS 226
G IP + L L + N ++G P E+G L+ L LD S N + G++P + T
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 227 LVQISMRNNNLQGTVPE 243
L +I + NNNL G +PE
Sbjct: 706 LTEIDLSNNNLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 147/320 (45%), Gaps = 42/320 (13%)
Query: 86 VTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFS 145
+ EL L G++G + T N L +L LS N+ SG+IP SL +L++L L L N
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 146 GEIPASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKN 204
GEIP + G IP+ + ++L + + +N+LTGE P+ +G L+N
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 205 LYFLDASDNAISGKLPAILPT--SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLS 262
L L S+N+ SG +PA L SL+ + + N GT+P ++ + Q ++ N ++
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIA 568
Query: 263 GSVPSFVFSHPSLQQLTLSFN--QFTSIQ----------------------QPAPTNDNN 298
G ++ + ++ + N +F I+ +PT DNN
Sbjct: 569 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 299 IFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIA 358
++ +D+S N L G +P + MP L L+L +N +G IP E +
Sbjct: 629 ---GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG--------DLR 677
Query: 359 PFQRLLLGGNYLFGAIPRSL 378
L L N L G IP+++
Sbjct: 678 GLNILDLSSNKLDGRIPQAM 697
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 118/246 (47%), Gaps = 18/246 (7%)
Query: 110 LETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPA-SIGXXXXXXXXXXXXXXX 168
L LDLS N F G++P + + L L LS N+FSGE+P ++
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 169 XGTIPASFNGLS-SLKRLEIQSNKLTGE-FPEL-----GSLKNLYFLDASDNAISGKLPA 221
G +P S LS SL L++ SN +G P L +L+ LY +N +GK+P
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL---QNNGFTGKIPP 409
Query: 222 ILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLT 279
L + LV + + N L GT+P SL LS L+ + L N L G +P + +L+ L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 280 LSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFT 339
L FN T +N N L + +SNN L G +P ++ + L+ L L NN F+
Sbjct: 470 LDFNDLTGEIPSGLSNCTN-----LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 340 GMIPTE 345
G IP E
Sbjct: 525 GNIPAE 530
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 126/301 (41%), Gaps = 71/301 (23%)
Query: 110 LETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXXXXXX 169
L+ LD+S N SG ++S T L L +S N F G IP
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP------------------- 262
Query: 170 GTIPASFNGLSSLKRLEIQSNKLTGEFPEL--GSLKNLYFLDASDNAISGKLPAIL--PT 225
+P L SL+ L + NK TGE P+ G+ L LD S N G +P +
Sbjct: 263 --LP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 226 SLVQISMRNNNLQGTVP-ESLKLLSYLQVVDLSHNKLSGSVPSFV--------------- 269
L +++ +NN G +P ++L + L+V+DLS N+ SG +P +
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 270 -FSHP-----------SLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGM 317
FS P +LQ+L L N FT P +N S+L+++ +S N L G
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-----CSELVSLHLSFNYLSGT 430
Query: 318 LPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRS 377
+P + + KL L L N G IP E + + L+L N L G IP
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMY--------VKTLETLILDFNDLTGEIPSG 482
Query: 378 L 378
L
Sbjct: 483 L 483
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 49/245 (20%)
Query: 91 LDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPA 150
LD +G + + N L + LSNN +G IP+ + L L L LS NSFSG IPA
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 151 SIGXXXXXXXXXXXXXXXXGTIPASF---------NGLSSLKRLEIQSNKLTGEFPELGS 201
+G GTIPA+ N ++ + + I+++ + E G+
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 202 L--------------------------------------KNLYFLDASDNAISGKLPAIL 223
L ++ FLD S N +SG +P +
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 224 PTS--LVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLS 281
+ L +++ +N++ G++P+ + L L ++DLS NKL G +P + + L ++ LS
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 282 FNQFT 286
N +
Sbjct: 710 NNNLS 714
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 137/341 (40%), Gaps = 44/341 (12%)
Query: 115 LSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXXXXXXGTIPA 174
LSN+ +GS+ L L LSRNS SG + P
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 175 SFNG---LSSLKRLEIQSNKLTGE-------FPELGSLKNLYFLDASDNAISGKLPAILP 224
+G L+SL+ L++ +N ++G G LK+L S N ISG +
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVDVSRC 196
Query: 225 TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQ 284
+L + + +NN +P L S LQ +D+S NKLSG + + L+ L +S NQ
Sbjct: 197 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 285 FTSIQQPAPTND-------NNIFSSQ-----------LIAVDISNNELQGMLPLFMALMP 326
F P P N F+ + L +D+S N G +P F
Sbjct: 256 FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 327 KLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSA 386
L +L+L +N F+G +P + ++ + + L L N G +P SL L
Sbjct: 316 LLESLALSSNNFSGELPMDTLLK-------MRGLKVLDLSFNEFSGELPESLTNLSASLL 368
Query: 387 NVRLADNCLYRCPFSFFFCQGAR---QKSLVECNRFTPVIP 424
+ L+ N + P CQ + Q+ ++ N FT IP
Sbjct: 369 TLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 73 GFRCDVSVSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLT 132
G R + ++ LS N+ Y G S T N + LD+S N SG IP+ + ++
Sbjct: 595 GIRSE-QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 133 RLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKL 192
L L L N SG IP +G G IP + + L+ L +++ +N L
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 193 TGEFPELGSLK 203
+G PE+G +
Sbjct: 714 SGPIPEMGQFE 724
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 25/212 (11%)
Query: 80 VSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESL--------SNL 131
+ L + L L +SG++ + L LDL+ N F+G+IP ++ +N
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 566
Query: 132 TRLIRLGLSRNS--------------FSGEIPASIGXXXXXXXXXXXXXXXXGTIPASFN 177
R +N F G + G +F+
Sbjct: 567 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 626
Query: 178 GLSSLKRLEIQSNKLTGEFP-ELGSLKNLYFLDASDNAISGKLPAILPT--SLVQISMRN 234
S+ L++ N L+G P E+GS+ L+ L+ N ISG +P + L + + +
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 235 NNLQGTVPESLKLLSYLQVVDLSHNKLSGSVP 266
N L G +P+++ L+ L +DLS+N LSG +P
Sbjct: 687 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 27/133 (20%)
Query: 114 DLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXXXXXXGTIP 173
++++ + G + N ++ L +S N SG IP IG ++P
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-----------------SMP 653
Query: 174 ASFNGLSSLKRLEIQSNKLTGEFP-ELGSLKNLYFLDASDNAISGKLPAILP--TSLVQI 230
F L + N ++G P E+G L+ L LD S N + G++P + T L +I
Sbjct: 654 YLF-------ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 231 SMRNNNLQGTVPE 243
+ NNNL G +PE
Sbjct: 707 DLSNNNLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 4/191 (2%)
Query: 79 SVSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLG 138
+++ L+++ L + SG++ + L TLD S N SG++P S+S+L L+ +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 139 LSRNSFSGEIPASIGX-XXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFP 197
N SG IP S G G IP +F L +L +++ N L G+
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS 214
Query: 198 EL-GSLKNLYFLDASDNAISGKLPAI-LPTSLVQISMRNNNLQGTVPESLKLLSYLQVVD 255
L GS KN + + N+++ L + L +L + +RNN + GT+P+ L L +L ++
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 256 LSHNKLSGSVP 266
+S N L G +P
Sbjct: 275 VSFNNLCGEIP 285
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 119/287 (41%), Gaps = 50/287 (17%)
Query: 31 IQVMKELKNSLDPNSVSPGSCLSSWDFSVDPCDSLFSEKFTCGFRCDVSVSALSRVTELN 90
+Q+ K+L N + LSSW + D C+ + G CD RV N
Sbjct: 12 LQIKKDLGNP---------TTLSSWLPTTDCCNRTW-----LGVLCDTDTQTY-RVN--N 54
Query: 91 LDQAGYS----GSLSTTSWNLPYL-------------------------ETLDLSNNFFS 121
LD +G + + ++ NLPYL L +++ S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 122 GSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXXXXXXGTIPASFNGLSS 181
G+IP+ LS + L+ L S N+ SG +P SI G IP S+ S
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 182 L-KRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT--SLVQISMRNNNLQ 238
L + I N+LTG+ P + NL F+D S N + G + + + +I + N+L
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285
+ + + L L +DL +N++ G++P + L L +SFN
Sbjct: 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 182 LKRLEIQSNKLTGEFPELGSLKNLYFLD----ASDNAISGKLPAILP--TSLVQISMRNN 235
+ L++ L +P SL NL +L+ N + G +P + T L + + +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 236 NLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTN 295
N+ G +P+ L + L +D S+N LSG++P + S P+L +T N+ + A +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG----AIPD 167
Query: 296 DNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTG 340
FS ++ IS N L G +P A + L+ + L N G
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 47/171 (27%)
Query: 80 VSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIR-LG 138
+S + + L+ SG+L + +LP L + N SG+IP+S + ++L +
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 139 LSRNSFSGEIP----------------------------------------------ASI 152
+SRN +G+IP +
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 153 GXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLK 203
G GT+P L L L + N L GE P+ G+L+
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXX 165
NL L L L NN + P L NLT L RL LS N+ S +I A G
Sbjct: 110 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQ 166
Query: 166 XXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT 225
+ L++L+RL+I SNK++ + L L NL L A++N IS P + T
Sbjct: 167 VTDLKPLA----NLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILT 221
Query: 226 SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285
+L ++S+ N L+ +L L+ L +DL++N++S P + L +L L NQ
Sbjct: 222 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277
Query: 286 TSI 288
++I
Sbjct: 278 SNI 280
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 35/178 (19%)
Query: 89 LNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEI 148
LN +Q G+L++ L L LDL+NN S P LS LT+L L L N S
Sbjct: 228 LNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281
Query: 149 PASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFL 208
P + GL++L LE+ N+L P + +LKNL +L
Sbjct: 282 PLA--------------------------GLTALTNLELNENQLEDISP-ISNLKNLTYL 314
Query: 209 DASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVP 266
N IS P T L ++ NN + SL L+ + + HN++S P
Sbjct: 315 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXX 165
NL L L L NN + P L NLT L RL LS N+ S +I A G
Sbjct: 109 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQ 165
Query: 166 XXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT 225
+ L++L+RL+I SNK++ + L L NL L A++N IS P + T
Sbjct: 166 VTDLKPLA----NLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILT 220
Query: 226 SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285
+L ++S+ N L+ +L L+ L +DL++N++S P + L +L L NQ
Sbjct: 221 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 276
Query: 286 TSI 288
++I
Sbjct: 277 SNI 279
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 35/178 (19%)
Query: 89 LNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEI 148
LN +Q G+L++ L L LDL+NN S P LS LT+L L L N S
Sbjct: 227 LNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 280
Query: 149 PASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFL 208
P + GL++L LE+ N+L P + +LKNL +L
Sbjct: 281 PLA--------------------------GLTALTNLELNENQLEDISP-ISNLKNLTYL 313
Query: 209 DASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVP 266
N IS P T L ++ NN + SL L+ + + HN++S P
Sbjct: 314 TLYFNNISDISPVSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP 369
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXX 165
NL L L L NN + P L NLT L RL LS N+ S +I A G
Sbjct: 105 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLNFGNQ 161
Query: 166 XXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT 225
+ L++L+RL+I SNK++ + L L NL L A++N IS P + T
Sbjct: 162 VTDLKPLA----NLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILT 216
Query: 226 SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285
+L ++S+ N L+ +L L+ L +DL++N++S P + L +L L NQ
Sbjct: 217 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 272
Query: 286 TSI 288
++I
Sbjct: 273 SNI 275
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 35/178 (19%)
Query: 89 LNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEI 148
LN +Q G+L++ L L LDL+NN S P LS LT+L L L N S
Sbjct: 223 LNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 276
Query: 149 PASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFL 208
P + GL++L LE+ N+L P + +LKNL +L
Sbjct: 277 PLA--------------------------GLTALTNLELNENQLEDISP-ISNLKNLTYL 309
Query: 209 DASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVP 266
N IS P T L ++ NN + SL L+ + + HN++S P
Sbjct: 310 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXX 165
NL L L L NN + P L NLT L RL LS N+ S +I A G
Sbjct: 105 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLNFGNQ 161
Query: 166 XXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT 225
+ L++L+RL+I SNK++ + L L NL L A++N IS P + T
Sbjct: 162 VTDLKPLA----NLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILT 216
Query: 226 SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285
+L ++S+ N L+ +L L+ L +DL++N++S P + L +L L NQ
Sbjct: 217 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 272
Query: 286 TSI 288
++I
Sbjct: 273 SNI 275
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 35/178 (19%)
Query: 89 LNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEI 148
LN +Q G+L++ L L LDL+NN S P LS LT+L L L N S
Sbjct: 223 LNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 276
Query: 149 PASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFL 208
P + GL++L LE+ N+L P + +LKNL +L
Sbjct: 277 PLA--------------------------GLTALTNLELNENQLEDISP-ISNLKNLTYL 309
Query: 209 DASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVP 266
N IS P T L ++ NN + SL L+ + + HN++S P
Sbjct: 310 TLYFNNISDISPVSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 81/190 (42%), Gaps = 32/190 (16%)
Query: 106 NLPYLETLDLSNN--FFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXX 163
+LP LE LDLS N F G +S T L L LS F+G I
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVI--------------- 386
Query: 164 XXXXXXGTIPASFNGLSSLKRLEIQSNKLT--GEFPELGSLKNLYFLDASDNAISGKLPA 221
T+ ++F GL L+ L+ Q + L EF SL+NL +LD S
Sbjct: 387 -------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 222 ILP--TSLVQISMRNNNLQGT-VPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQL 278
I +SL + M N+ Q +P+ L L +DLS +L P+ S SLQ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 279 TLSFNQFTSI 288
+S N F S+
Sbjct: 500 NMSHNNFFSL 509
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 176 FNGLSSLKRLEIQSNKLTGEF-PEL-GSLKNLYFLDASDNAISGKLPAILPT--SLVQIS 231
FNGLSSL+ L++ N F P++ L+NL FLD S + P + SL ++
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 232 MRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHP-SLQQLTLSFNQF 285
M +NN K L+ LQV+D S N + S + P SL L L+ N F
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 179 LSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGK 218
L SLKRL SNK F E+ L +L FLD S N +S K
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFK 362
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 81/190 (42%), Gaps = 32/190 (16%)
Query: 106 NLPYLETLDLSNN--FFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXX 163
+LP LE LDLS N F G +S T L L LS F+G I
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVI--------------- 386
Query: 164 XXXXXXGTIPASFNGLSSLKRLEIQSNKLT--GEFPELGSLKNLYFLDASDNAISGKLPA 221
T+ ++F GL L+ L+ Q + L EF SL+NL +LD S
Sbjct: 387 -------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 222 ILP--TSLVQISMRNNNLQGT-VPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQL 278
I +SL + M N+ Q +P+ L L +DLS +L P+ S SLQ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 279 TLSFNQFTSI 288
++ NQ S+
Sbjct: 500 NMASNQLKSV 509
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 179 LSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGK 218
L SLKRL SNK F E+ L +L FLD S N +S K
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFK 362
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 80/190 (42%), Gaps = 32/190 (16%)
Query: 106 NLPYLETLDLSNN--FFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXX 163
+LP LE LDLS N F G +S L L LS F+G I
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS---FNGVI--------------- 410
Query: 164 XXXXXXGTIPASFNGLSSLKRLEIQSNKLT--GEFPELGSLKNLYFLDASDNAISGKLPA 221
T+ ++F GL L+ L+ Q + L EF SL+NL +LD S
Sbjct: 411 -------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463
Query: 222 ILP--TSLVQISMRNNNLQGT-VPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQL 278
I +SL + M N+ Q +P+ L L +DLS +L P+ S SLQ L
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 279 TLSFNQFTSI 288
+S N F S+
Sbjct: 524 NMSHNNFFSL 533
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 176 FNGLSSLKRLEIQSNKLTGEF-PEL-GSLKNLYFLDASDNAISGKLPAILPT--SLVQIS 231
FNGLSSL+ L++ N F P++ L+NL FLD S + P + SL ++
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 232 MRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHP-SLQQLTLSFNQF 285
M +NN K L+ LQV+D S N + S + P SL L L+ N F
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 179 LSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGK 218
L SLKRL SNK F E+ L +L FLD S N +S K
Sbjct: 348 LKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFK 386
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
Query: 184 RLEIQSNK--LTGEFPELGSLKNLYFLDASDNAI-SGKLPAILP-TSLVQISMRNNNL-- 237
LE+ +K LT P+L K+ L S+N + + L ++P T L Q+++ L
Sbjct: 12 HLEVNCDKRQLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK 69
Query: 238 ---QGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPT 294
GT+P L +DLSHN+L S+P + P+L L +SFN+ TS+ A
Sbjct: 70 LQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 295 NDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGM 341
+L + + NEL+ + P + PKL LSL NN+ T +
Sbjct: 122 G-----LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 181 SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT--SLVQISMRNNNLQ 238
+L R E+ ++ G P LG+L D S N + LP + T +L + + N L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTL------DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSI 288
+L+ L LQ + L N+L P + P L++L+L+ NQ T +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
Query: 184 RLEIQSNK--LTGEFPELGSLKNLYFLDASDNAI-SGKLPAILP-TSLVQISMRNNNL-- 237
LE+ +K LT P+L K+ L S+N + + L ++P T L Q+++ L
Sbjct: 12 HLEVNCDKRQLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK 69
Query: 238 ---QGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPT 294
GT+P L +DLSHN+L S+P + P+L L +SFN+ TS+ A
Sbjct: 70 LQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 295 NDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGM 341
+L + + NEL+ + P + PKL LSL NN+ T +
Sbjct: 122 G-----LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 181 SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT--SLVQISMRNNNLQ 238
+L R E+ ++ G P LG+L D S N + LP + T +L + + N L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTL------DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSI 288
+L+ L LQ + L N+L P + P L++L+L+ NQ T +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
Query: 184 RLEIQSNK--LTGEFPELGSLKNLYFLDASDNAI-SGKLPAILP-TSLVQISMRNNNL-- 237
LE+ +K LT P+L K+ L S+N + + L ++P T L Q+++ L
Sbjct: 12 HLEVNCDKRQLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK 69
Query: 238 ---QGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPT 294
GT+P L +DLSHN+L S+P + P+L L +SFN+ TS+ A
Sbjct: 70 LQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 295 NDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGM 341
+L + + NEL+ + P + PKL LSL NN+ T +
Sbjct: 122 G-----LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 181 SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT--SLVQISMRNNNLQ 238
+L R E+ ++ G P LG+L D S N + LP + T +L + + N L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTL------DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSI 288
+L+ L LQ + L N+L P + P L++L+L+ NQ T +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
Query: 184 RLEIQSNK--LTGEFPELGSLKNLYFLDASDNAI-SGKLPAILP-TSLVQISMRNNNL-- 237
LE+ +K LT P+L K+ L S+N + + L ++P T L Q+++ L
Sbjct: 12 HLEVNCDKRQLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK 69
Query: 238 ---QGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPT 294
GT+P L +DLSHN+L S+P + P+L L +SFN+ TS+ A
Sbjct: 70 LQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 295 NDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGM 341
+L + + NEL+ + P + PKL LSL NN+ T +
Sbjct: 122 G-----LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 181 SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT--SLVQISMRNNNLQ 238
+L R E+ ++ G P LG+L D S N + LP + T +L + + N L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTL------DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSI 288
+L+ L LQ + L N+L P + P L++L+L+ NQ T +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 184 RLEIQSNK--LTGEFPELGSLKNLYFLDASDNAI-SGKLPAILP-TSLVQISMRNNNL-- 237
LE+ +K LT P+L K+ L S+N + + L ++P T L Q+++ L
Sbjct: 12 HLEVNCDKRDLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK 69
Query: 238 ---QGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPT 294
GT+P L +DLSHN+L S+P + P+L L +SFN+ TS+ A
Sbjct: 70 LQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 295 NDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGM 341
+L + + NEL+ + P + PKL LSL NN T +
Sbjct: 122 G-----LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 181 SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT--SLVQISMRNNNLQ 238
+L R E+ ++ G P LG+L D S N + LP + T +L + + N L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTL------DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSI 288
+L+ L LQ + L N+L P + P L++L+L+ N T +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 184 RLEIQSNK--LTGEFPELGSLKNLYFLDASDNAI-SGKLPAILP-TSLVQISMRNNNL-- 237
LE+ +K LT P+L K+ L S+N + + L ++P T L Q+++ L
Sbjct: 12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69
Query: 238 ---QGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPT 294
GT+P L +DLSHN+L S+P + P+L L +SFN+ TS+ A
Sbjct: 70 LQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 295 NDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGM 341
+L + + NEL+ + P + PKL LSL NN T +
Sbjct: 122 G-----LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 181 SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT--SLVQISMRNNNLQ 238
+L R E+ ++ G P LG+L D S N + LP + T +L + + N L
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTL------DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSI 288
+L+ L LQ + L N+L P + P L++L+L+ N T +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 184 RLEIQSNK--LTGEFPELGSLKNLYFLDASDNAI-SGKLPAILP-TSLVQISMRNNNL-- 237
LE+ +K LT P+L K+ L S+N + + L ++P T L Q+++ L
Sbjct: 12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69
Query: 238 ---QGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPT 294
GT+P L +DLSHN+L S+P + P+L L +SFN+ TS+ A
Sbjct: 70 LQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 295 NDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGM 341
+L + + NEL+ + P + PKL LSL NN T +
Sbjct: 122 G-----LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 181 SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT--SLVQISMRNNNLQ 238
+L R E+ ++ G P LG+L D S N + LP + T +L + + N L
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTL------DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSI 288
+L+ L LQ + L N+L P + P L++L+L+ N T +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 184 RLEIQSNK--LTGEFPELGSLKNLYFLDASDNAI-SGKLPAILP-TSLVQISMRNNNL-- 237
LE+ +K LT P+L K+ L S+N + + L ++P T L Q+++ L
Sbjct: 12 HLEVNCDKRDLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK 69
Query: 238 ---QGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPT 294
GT+P L +DLSHN+L S+P + P+L L +SFN+ TS+ A
Sbjct: 70 LQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 295 NDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGM 341
+L + + NEL+ + P + PKL LSL NN T +
Sbjct: 122 G-----LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTEL 163
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 181 SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT--SLVQISMRNNNLQ 238
+L R E+ ++ G P LG+L D S N + LP + T +L + + N L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTL------DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSI 288
+L+ L LQ + L N+L P + P L++L+L+ N T +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTEL 163
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 184 RLEIQSNK--LTGEFPELGSLKNLYFLDASDNAI-SGKLPAILP-TSLVQISMRNNNL-- 237
LE+ +K LT P+L K+ L S+N + + L ++P T L Q+++ L
Sbjct: 12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69
Query: 238 ---QGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPT 294
GT+P L +DLSHN+L S+P + P+L L +SFN+ TS+ A
Sbjct: 70 LQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 295 NDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGM 341
+L + + NEL+ + P + PKL LSL NN T +
Sbjct: 122 G-----LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 181 SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT--SLVQISMRNNNLQ 238
+L R E+ ++ G P LG+L D S N + LP + T +L + + N L
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTL------DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSI 288
+L+ L LQ + L N+L P + P L++L+L+ N T +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 184 RLEIQSNK--LTGEFPELGSLKNLYFLDASDNAI-SGKLPAILP-TSLVQISMRNNNL-- 237
LE+ +K LT P+L K+ L S+N + + L ++P T L Q+++ L
Sbjct: 13 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK 70
Query: 238 ---QGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPT 294
GT+P L +DLSHN+L S+P + P+L L +SFN+ TS+ A
Sbjct: 71 LQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 122
Query: 295 NDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGM 341
+L + + NEL+ + P + PKL LSL NN T +
Sbjct: 123 G-----LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 164
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 181 SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT--SLVQISMRNNNLQ 238
+L R E+ ++ G P LG+L D S N + LP + T +L + + N L
Sbjct: 62 NLDRCELTKLQVDGTLPVLGTL------DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 114
Query: 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSI 288
+L+ L LQ + L N+L P + P L++L+L+ N T +
Sbjct: 115 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 164
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 171 TIPASFNGLSSLKRLEIQSNKLT--GEFPELGSLKNLYFLDASDNAISGKLPAILP--TS 226
T+ ++F GL L+ L+ Q + L EF SL+NL +LD S I +S
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 227 LVQISMRNNNLQGT-VPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285
L + M N+ Q +P+ L L +DLS +L P+ S SLQ L +S N F
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 286 TSI 288
S+
Sbjct: 212 FSL 214
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 176 FNGLSSLKRLEIQSNKLTGEF-PEL-GSLKNLYFLDASDNAISGKLPAILPT--SLVQIS 231
FNGLSSL+ L++ N F P++ L+NL FLD S + P + SL ++
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 232 MRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHP-SLQQLTLSFNQF 285
M +NN K L+ LQV+D S N + S + P SL L L+ N F
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 75/179 (41%), Gaps = 39/179 (21%)
Query: 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNS 143
+R+ LN D+ + P+LE L+L+ N S P + +NL L LGL N
Sbjct: 42 NRIKTLNQDEFA----------SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 144 FSGEIPASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNK----LTGEFPEL 199
IP + F GLS+L +L+I NK L F +L
Sbjct: 92 LK-LIPLGV-----------------------FTGLSNLTKLDISENKIVILLDYMFQDL 127
Query: 200 GSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSH 258
+LK+L D IS + + L SL Q+++ NL E+L L L V+ L H
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 175 SFNGLSSLKRLEIQSNKL----TGEFPELGSLKNLYFLDASDNAIS-GKLPAILPTSLVQ 229
+F+ L+ L+ L + NKL G F EL +L+ L+ D A+ G ++ +L +
Sbjct: 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV--NLAE 113
Query: 230 ISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSH-PSLQQLTLSFNQFTSI 288
+ + N L+ P L+ L + L +N+L S+P VF SL++L L NQ +
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRV 172
Query: 289 QQPAPTNDNNIFS--SQLIAVDISNNELQGMLPLFMALMPKLSALSLENN 336
+ A F ++L + + NN+L+ + + KL L L+ N
Sbjct: 173 PEGA-------FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 7/71 (9%)
Query: 180 SSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQ- 238
+SLK L++ +N+LT PEL +L L +++A +N ++ LP LPTSL +S+RNN L
Sbjct: 120 ASLKHLDVDNNQLTX-LPELPAL--LEYINADNNQLT-XLPE-LPTSLEVLSVRNNQLTF 174
Query: 239 -GTVPESLKLL 248
+PESL+ L
Sbjct: 175 LPELPESLEAL 185
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 64/238 (26%)
Query: 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXX 165
NL L L L NN + P L NLT L RL LS N+ S +I A
Sbjct: 105 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--------------- 146
Query: 166 XXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT 225
+GL+SL++L SN++T P L +L L LD S N +S
Sbjct: 147 ----------LSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVS--------- 186
Query: 226 SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285
IS+ L L+ L+ + ++N++S P + ++ L +L+L+ NQ
Sbjct: 187 ---DISV------------LAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQL 229
Query: 286 TSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIP 343
I A + L +D++NN++ + PL + + KL+ L L N+ + + P
Sbjct: 230 KDIGTLASL-------TNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 35/178 (19%)
Query: 89 LNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEI 148
LN +Q G+L++ L L LDL+NN S P LS LT+L L L N S
Sbjct: 224 LNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 277
Query: 149 PASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFL 208
P + GL++L LE+ N+L P + +LKNL +L
Sbjct: 278 PLA--------------------------GLTALTNLELNENQLEDISP-ISNLKNLTYL 310
Query: 209 DASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVP 266
N IS P T L ++ NN + SL L+ + + HN++S P
Sbjct: 311 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 31/162 (19%)
Query: 202 LKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVP------------------- 242
L NL ++ S+N ++ P T LV I M NN + P
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 121
Query: 243 -ESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFS 301
+ LK L+ L ++LS N +S S + SLQQL S NQ T ++ A
Sbjct: 122 IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKPLANL------- 172
Query: 302 SQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIP 343
+ L +DIS+N++ + +A + L +L NN+ + + P
Sbjct: 173 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 64/238 (26%)
Query: 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXX 165
NL L L L NN + P L NLT L RL LS N+ S +I A
Sbjct: 105 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--------------- 146
Query: 166 XXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT 225
+GL+SL++L SN++T P L +L L LD S N +S
Sbjct: 147 ----------LSGLTSLQQLSFSSNQVTDLKP-LANLTTLERLDISSNKVS--------- 186
Query: 226 SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285
IS+ L L+ L+ + ++N++S P + ++ L +L+L+ NQ
Sbjct: 187 ---DISV------------LAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQL 229
Query: 286 TSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIP 343
I A + L +D++NN++ + PL + + KL+ L L N+ + + P
Sbjct: 230 KDIGTLASL-------TNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 35/178 (19%)
Query: 89 LNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEI 148
LN +Q G+L++ L L LDL+NN S P LS LT+L L L N S
Sbjct: 224 LNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 277
Query: 149 PASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFL 208
P + GL++L LE+ N+L P + +LKNL +L
Sbjct: 278 PLA--------------------------GLTALTNLELNENQLEDISP-ISNLKNLTYL 310
Query: 209 DASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVP 266
N IS P T L ++ NN + SL L+ + + HN++S P
Sbjct: 311 TLYFNNISDISPVSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 31/162 (19%)
Query: 202 LKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVP------------------- 242
L NL ++ S+N ++ P T LV I M NN + P
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 121
Query: 243 -ESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFS 301
+ LK L+ L ++LS N +S S + SLQQL+ S NQ T ++ A
Sbjct: 122 IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPLANL------- 172
Query: 302 SQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIP 343
+ L +DIS+N++ + +A + L +L NN+ + + P
Sbjct: 173 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 64/238 (26%)
Query: 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXX 165
NL L L L NN + P L NLT L RL LS N+ S +I A
Sbjct: 105 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--------------- 146
Query: 166 XXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPT 225
+GL+SL++L SN++T P L +L L LD S N +S
Sbjct: 147 ----------LSGLTSLQQLSFSSNQVTDLKP-LANLTTLERLDISSNKVS--------- 186
Query: 226 SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285
IS+ L L+ L+ + ++N++S P + ++ L +L+L+ NQ
Sbjct: 187 ---DISV------------LAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQL 229
Query: 286 TSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIP 343
I A + L +D++NN++ + PL + + KL+ L L N+ + + P
Sbjct: 230 KDIGTLASL-------TNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 35/178 (19%)
Query: 89 LNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEI 148
LN +Q G+L++ L L LDL+NN S P LS LT+L L L N S
Sbjct: 224 LNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 277
Query: 149 PASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFL 208
P + GL++L LE+ N+L P + +LKNL +L
Sbjct: 278 PLA--------------------------GLTALTNLELNENQLEDISP-ISNLKNLTYL 310
Query: 209 DASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVP 266
N IS P T L ++ NN + SL L+ + + HN++S P
Sbjct: 311 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 31/162 (19%)
Query: 202 LKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVP------------------- 242
L NL ++ S+N ++ P T LV I M NN + P
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 121
Query: 243 -ESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFS 301
+ LK L+ L ++LS N +S S + SLQQL+ S NQ T ++ A
Sbjct: 122 IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPLANL------- 172
Query: 302 SQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIP 343
+ L +DIS+N++ + +A + L +L NN+ + + P
Sbjct: 173 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 27/187 (14%)
Query: 175 SFNGLSSLKRLEIQSNKLTG----EFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQI 230
F GL L L + +NK++ F L L+ LY S N + ++P LP+SLV++
Sbjct: 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI---SKNHLV-EIPPNLPSSLVEL 128
Query: 231 SMRNNNLQGTVPESLKLLSYLQVVDLSHNKL--SGSVPSFVFSHPSLQQLTLSFNQFTSI 288
+ +N ++ L + +++ N L SG P F L L +S + T I
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGLKLNYLRISEAKLTGI 187
Query: 289 QQPAPTNDNNIF----------------SSQLIAVDISNNELQGMLPLFMALMPKLSALS 332
+ P N + S+L + + +N+++ + ++ +P L L
Sbjct: 188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247
Query: 333 LENNKFT 339
L+NNK +
Sbjct: 248 LDNNKLS 254
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 180 SSLKRLEIQSNKLTG-EFPELGSLKNLYFLDASDNAI----SGKLPAILPTSLVQISMRN 234
+L L + NK+ E +L LY L N I +G L + LPT L ++ + N
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPT-LRELHLDN 250
Query: 235 NNLQGTVPESLKLLSYLQVVDLSHNKLS 262
N L VP L L LQVV L N ++
Sbjct: 251 NKL-SRVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 29/124 (23%)
Query: 86 VTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFS 145
VTEL LD ++ S N +L +DLSNN S +S SN+T+L+ L LS N
Sbjct: 33 VTELYLDGNQFTLVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 146 GEIPASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLT----GEFPELGS 201
IP P +F+GL SL+ L + N ++ G F +L +
Sbjct: 92 C-IP-----------------------PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127
Query: 202 LKNL 205
L +L
Sbjct: 128 LSHL 131
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 219 LPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQL 278
LP +P + ++ + N VP+ L +L ++DLS+N++S + L L
Sbjct: 25 LPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83
Query: 279 TLSFNQFTSI 288
LS+N+ I
Sbjct: 84 ILSYNRLRCI 93
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Query: 248 LSYLQVVDLSHNKLSGSVPSFVFSH-PSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIA 306
LS+LQV+ L+HN L+ S+P VFSH +L+ L+L+ N+ T + N + L
Sbjct: 479 LSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSH-------NDLPANLEI 530
Query: 307 VDISNNELQGMLPLFMALMPKLSALSLENNKF 338
+DIS N+L P + LS L + +NKF
Sbjct: 531 LDISRNQLLAPNP---DVFVSLSVLDITHNKF 559
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 113 LDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXXXXXXGTI 172
L+ + N F+ S+ + S L RL L L RN ++
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT------------------ 399
Query: 173 PASFNGLSSLKRLEIQSNKLTGEFPE--LGSLKNLYFLDASDNAISGKLPAILPTSLVQI 230
+SSL+ L++ N L + +++ L+ S N ++G + LP + +
Sbjct: 400 ----KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL 455
Query: 231 SMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSH-PSLQQLTLSFN 283
+ NN + ++P+ + L LQ ++++ N+L SVP VF SLQ + L N
Sbjct: 456 DLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 176 FNGLSSLKRLE---IQSNKLTGEFPELGSLKNLYFLDASD------NAISGKLPAILPTS 226
F G S+LKRL+ +Q N L F KN+ L+ D N+ + S
Sbjct: 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429
Query: 227 LVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFT 286
++ +++ +N L G+V L ++V+DL +N++ S+P V +LQ+L ++ NQ
Sbjct: 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK 486
Query: 287 SI 288
S+
Sbjct: 487 SV 488
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 9/160 (5%)
Query: 204 NLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSG 263
N+ L SD + P+S ++ N +V + L LQ + L N L
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391
Query: 264 --SVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLF 321
V + SL+ L +S N S + ++ ++ +++S+N L G +F
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNS----HAYDRTCAWAESILVLNLSSNMLTG--SVF 445
Query: 322 MALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQ 361
L PK+ L L NN+ IP + A+ +A Q
Sbjct: 446 RCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQ 484
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 218 KLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQ 277
K+P LP + ++NN + K L L + L +NK+S P L++
Sbjct: 45 KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104
Query: 278 LTLSFNQFTSIQQPAPT--NDNNIFSSQLIAVDISN-NELQGMLPLFMALMPKLSALSLE 334
L LS NQ + + P + + +++ V S N L M+ + + P L + +E
Sbjct: 105 LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIE 163
Query: 335 NNKFTGMIPTEYAIRVA 351
N F GM Y IR+A
Sbjct: 164 NGAFQGMKKLSY-IRIA 179
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 75/208 (36%), Gaps = 54/208 (25%)
Query: 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXX 165
NL L TL L NN S P + + L +L RL LS+N E+P +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENE 132
Query: 166 XXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGS---LKNLYFLDASDNAISGKLPAI 222
+ FNGL+ + +E+ +N L E G+ +K L ++ +D I+ +P
Sbjct: 133 ITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG 189
Query: 223 LPTSLVQISMR-----------------------------------------------NN 235
LP SL ++ + NN
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249
Query: 236 NLQGTVPESLKLLSYLQVVDLSHNKLSG 263
N VP L Y+QVV L +N +S
Sbjct: 250 NKLVKVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 218 KLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQ 277
K+P LP + ++NN + K L L + L +NK+S P L++
Sbjct: 45 KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104
Query: 278 LTLSFNQFTSIQQPAPT--NDNNIFSSQLIAVDISN-NELQGMLPLFMALMPKLSALSLE 334
L LS NQ + + P + + +++ V S N L M+ + + P L + +E
Sbjct: 105 LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIE 163
Query: 335 NNKFTGMIPTEYAIRVA 351
N F GM Y IR+A
Sbjct: 164 NGAFQGMKKLSY-IRIA 179
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 75/208 (36%), Gaps = 54/208 (25%)
Query: 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXXXXXXXXXXXX 165
NL L TL L NN S P + + L +L RL LS+N E+P +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENE 132
Query: 166 XXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGS---LKNLYFLDASDNAISGKLPAI 222
+ FNGL+ + +E+ +N L E G+ +K L ++ +D I+ +P
Sbjct: 133 ITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG 189
Query: 223 LPTSLVQISMR-----------------------------------------------NN 235
LP SL ++ + NN
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249
Query: 236 NLQGTVPESLKLLSYLQVVDLSHNKLSG 263
N VP L Y+QVV L +N +S
Sbjct: 250 NKLVKVPGGLADHKYIQVVYLHNNNISA 277
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 170 GTIPASFNGLSSLKRLEIQSNKLT--GEFPELGS-LKNLYFLDASDNAIS---GKLPAIL 223
T+ + L+ L+ L +Q N+L + E+ + +K+L LD S N++S K
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397
Query: 224 PTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFN 283
SL+ ++M +N L T+ L ++V+DL NK+ S+P V +LQ+L ++ N
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN 454
Query: 284 QFTSI 288
Q S+
Sbjct: 455 QLKSV 459
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 207 FLDASDNAISGKLPA-ILPTSLVQI-SMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGS 264
L+ S N IS + IL S ++I + +N +Q K L+ +DLSHNKL
Sbjct: 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK- 83
Query: 265 VPSFVFSHPS--LQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPL 320
+ HP+ L+ L LSFN F ++ P N+ + + + ++ E +LP+
Sbjct: 84 ----ISCHPTVNLKHLDLSFNAFDAL--PICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 99/269 (36%), Gaps = 65/269 (24%)
Query: 76 CDVSVSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLI 135
C++SV +L NL + +S STT L+ LDL+ G +P + L L
Sbjct: 249 CEMSVESL------NLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLK 301
Query: 136 RLGLSRNSFSGEIPASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSN--KLT 193
+L LS N F S A+F SL L I+ N KL
Sbjct: 302 KLVLSVNHFDQLCQIS---------------------AANF---PSLTHLYIRGNVKKLH 337
Query: 194 GEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQV 253
L L NL LD S N I L LK LS+LQ
Sbjct: 338 LGVGCLEKLGNLQTLDLSHNDIEASDCCSL--------------------QLKNLSHLQT 377
Query: 254 VDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDN----NIFSSQLIAVDI 309
++LSHN+ G P L+ L L+F + I P N + + +D
Sbjct: 378 LNLSHNEPLGLQSQAFKECPQLELLDLAFTRL-HINAPQSPFQNLHFLQVLNLTYCFLDT 436
Query: 310 SNNELQGMLPLFMALMPKLSALSLENNKF 338
SN L +A +P L L+L+ N F
Sbjct: 437 SNQHL-------LAGLPVLRHLNLKGNHF 458
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 27/169 (15%)
Query: 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSF-SGEIPAS--IGXXXXXXXXX 162
NL L L+LS+ S L+ L L L L NSF G I + +
Sbjct: 422 NLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILI 481
Query: 163 XXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGE-FPELGSLKNLYFLDASDNAISGKLPA 221
+F+GL ++ L++ N LTG+ L LK LY
Sbjct: 482 LSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLY--------------- 526
Query: 222 ILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVF 270
++M +NN++ P L LS +++LSHN L + + F
Sbjct: 527 --------LNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNIHF 567
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 173 PASFNGLSSLKRLEIQSNKLTG--EFPELGSLKNLYFLDASDNAI-SGKLPAILP--TSL 227
P SF+GL+SL+ L KL FP +G L L L+ + N I S KLPA T+L
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 150
Query: 228 VQISMRNNNLQGTVPESLKLLSYLQVVDLS 257
V + + N +Q L+ L V+LS
Sbjct: 151 VHVDLSYNYIQTITVNDLQFLRENPQVNLS 180
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 47/118 (39%), Gaps = 29/118 (24%)
Query: 98 GSLSTTSWNLPYLETLDLSNNF--FSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXX 155
GS+S LP L LDLS N FSG S L L L SF+G I S
Sbjct: 335 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL---SFNGAIIMS---- 387
Query: 156 XXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKL--TGEFPELGSLKNLYFLDAS 211
A+F GL L+ L+ Q + L EF SL+ L +LD S
Sbjct: 388 ------------------ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 427
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 38/209 (18%)
Query: 90 NLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSI-PESLSNLTRLIRLGLSRNSFSGEI 148
+D A ++G L LE LDLS+N S+ P + L RL L L R
Sbjct: 69 RIDAAAFTG--------LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ--- 117
Query: 149 PASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTG----EFPELGSLKN 204
+G P F GL++L+ L +Q N L F +LG+L +
Sbjct: 118 --ELG-------------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 205 LYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGS 264
L+ +++ + L SL ++ + N + P + + L L + L N LS
Sbjct: 157 LFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 215
Query: 265 VPSFVFSHPSLQQLTLSFNQFTSIQQPAP 293
+ +LQ L L+ N + + P
Sbjct: 216 PTEALAPLRALQYLRLNDNPWVCDCRARP 244
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 173 PASFNGLSSLKRLEIQSNKLTG--EFPELGSLKNLYFLDASDNAI-SGKLPAILP--TSL 227
P SF+GL+SL+ L KL FP +G L L L+ + N I S KLPA T+L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155
Query: 228 VQISMRNNNLQGTVPESLKLLSYLQVVDLS 257
V + + N +Q L+ L V+LS
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLS 185
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 78/218 (35%), Gaps = 56/218 (25%)
Query: 98 GSLSTTSWNLPYLETLDLSNNF--FSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGXX 155
GS+S LP L LDLS N FSG S L L L SF+G I S
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL---SFNGAIIMS---- 392
Query: 156 XXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKL--TGEFPELGSLKNLYFLDASDN 213
A+F GL L+ L+ Q + L EF SL+ L +LD S
Sbjct: 393 ------------------ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434
Query: 214 AISGKLPAIL--PTSLVQISM-----RNNNLQGTVPESLKL------------------- 247
I TSL + M ++N L + L
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494
Query: 248 -LSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQ 284
L LQ++++SHN L S SL L SFN+
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 38/209 (18%)
Query: 90 NLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSI-PESLSNLTRLIRLGLSRNSFSGEI 148
+D A ++G L LE LDLS+N S+ P + L RL L L R
Sbjct: 70 RIDAAAFTG--------LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ--- 118
Query: 149 PASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTG----EFPELGSLKN 204
+G P F GL++L+ L +Q N L F +LG+L +
Sbjct: 119 --ELG-------------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 205 LYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGS 264
L+ +++ + L SL ++ + N + P + + L L + L N LS
Sbjct: 158 LFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
Query: 265 VPSFVFSHPSLQQLTLSFNQFTSIQQPAP 293
+ +LQ L L+ N + + P
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARP 245
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 36/149 (24%)
Query: 226 SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285
L +SM NNNL+ ++ + + LQ + LS N+L+ S + PSL +S+N
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLL 198
Query: 286 TSIQQP-----------------APTN---------DNNIFSSQ-------LIAVDISNN 312
+++ P P N NN+ + L+ VD+S N
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258
Query: 313 ELQGMLPLFMALMPKLSALSLENNKFTGM 341
EL+ ++ M +L L + NN+ +
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVAL 287
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 36/155 (23%)
Query: 226 SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGS----VPSFVFSHPS------- 274
L +SM NNNL+ ++ + + LQ + LS N+L+ +PS ++ S
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207
Query: 275 -----LQQLTLSFNQFTSIQQPAPT-------NDNNIFSSQ-------LIAVDISNNELQ 315
+++L S N ++ P NN+ + L+ VD+S NEL+
Sbjct: 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE 267
Query: 316 GMLPLFMALMPKLSALSLENNKFTGM------IPT 344
++ M +L L + NN+ + IPT
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 302
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 171 TIPASFNGLSSLKR-LEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQ 229
T+ + GL + R + + + +L ELG + S + + G+LP LV+
Sbjct: 12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRI--------SSDGLFGRLP-----HLVK 58
Query: 230 ISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSI 288
+ ++ N L G P + + S++Q + L NK+ L+ L L NQ + +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 179 LSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNN 236
L +++ L + NKL + L L NL +L + N + + T+L ++ + N
Sbjct: 62 LPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 237 LQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSH-PSLQQLTLSFNQFTSI 288
LQ L+ L ++L+HN+L S+P VF +L +L LS+NQ S+
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSL 172
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 174 ASFNGLSSLKRLEIQSNKL----TGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQ 229
++ L++L L + N+L G F +L +LK L ++ ++ + L T+L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL-TNLTY 137
Query: 230 ISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSH-PSLQQLTLSFNQFTSI 288
+++ +N LQ L+ L +DLS+N+L S+P VF L+ L L NQ S+
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSV 196
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 218 KLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQ 277
++P LP ++ +I + N ++ P + L+ +DLS+N++S P SL
Sbjct: 25 EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84
Query: 278 LTLSFNQFTSI 288
L L N+ T +
Sbjct: 85 LVLYGNKITEL 95
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 218 KLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQ 277
++P LP ++ +I + N ++ P + L+ +DLS+N++S P SL
Sbjct: 25 EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84
Query: 278 LTLSFNQFTSI 288
L L N+ T +
Sbjct: 85 LVLYGNKITEL 95
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 13/110 (11%)
Query: 181 SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGT 240
SL+ L ++ N LT + PEL ++L FLD S+N SG + LP +L ++ +N ++
Sbjct: 258 SLEALNVRDNYLT-DLPELP--QSLTFLDVSENIFSGL--SELPPNLYYLNASSNEIRSL 312
Query: 241 VPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQ 290
L L+ +++S+NKL +P+ P L++L SFN + +
Sbjct: 313 C----DLPPSLEELNVSNNKL-IELPALP---PRLERLIASFNHLAEVPE 354
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 48/268 (17%)
Query: 83 LSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRN 142
+ +VT+ +L QA SL ++WN+ + LDLS N S L+ T+L L LS N
Sbjct: 14 IEKVTDSSLKQA--LASLRQSAWNV---KELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 143 SFSGEIPASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSL 202
+ LS+L+ L++ +N + EL
Sbjct: 69 VLYETL--------------------------DLESLSTLRTLDLNNNYV----QELLVG 98
Query: 203 KNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLS 262
++ L A++N IS ++ I + NN + S +Q +DL N++
Sbjct: 99 PSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 263 G-SVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLF 321
+ S +L+ L L +N ++ + ++L +D+S+N+L M P F
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVK-------GQVVFAKLKTLDLSSNKLAFMGPEF 210
Query: 322 MALMPKLSALSLENNKFTGMIPTEYAIR 349
+ ++ +SL NNK ++ E A+R
Sbjct: 211 QS-AAGVTWISLRNNK---LVLIEKALR 234
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 185 LEIQSNKL----TGEFPELGSLKNLYF----LDASDNAISGKLPAILPTSLVQISMRNNN 236
L++++N L G F EL SL LY L + N + KL TSL +++ N
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL-----TSLTYLNLSTNQ 87
Query: 237 LQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSH-PSLQQLTLSFNQFTSI 288
LQ L+ L+ + L+ N+L S+P VF L+ L L NQ S+
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSV 139
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 225 TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSH-PSLQQLTLSFN 283
TSL Q+ + N LQ L+ L ++LS N+L S+P+ VF L++L L+ N
Sbjct: 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTN 110
Query: 284 QFTSIQQPAPTNDNNIFS--SQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGM 341
Q S+ + +F +QL + + N+L+ + + L + L +N +
Sbjct: 111 QLQSLP-------DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163
Query: 342 IP 343
P
Sbjct: 164 CP 165
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 219 LPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSH-PSLQQ 277
+P +P + + N+L+ L+ L + L NKL S+P+ VF+ SL
Sbjct: 22 VPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTY 80
Query: 278 LTLSFNQFTSIQQPAPTNDNNIFS--SQLIAVDISNNELQGMLPLFMALMPKLSALSLEN 335
L LS NQ S+ N +F +QL + ++ N+LQ + + +L L L
Sbjct: 81 LNLSTNQLQSLP-------NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133
Query: 336 NKF 338
N+
Sbjct: 134 NQL 136
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 172 IPASFNGLSSLKRLEIQSNKLTGEFPELGS---LKNLYFLD 209
+PA LS+L+ L++ N+LT ELGS LK YF D
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD 302
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 234 NNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPS 267
N N +P +K LS L+V+DLSHN+L+ S+P+
Sbjct: 255 NGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPA 287
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 208 LDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPS 267
+D S +++ +P +PT+ + + +N + P L+ L +DL +N+L+ +P+
Sbjct: 22 VDCSGKSLA-SVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPA 79
Query: 268 FVFSH-PSLQQLTLSFNQFTSIQQPA 292
VF L QL+L+ NQ SI + A
Sbjct: 80 GVFDKLTQLTQLSLNDNQLKSIPRGA 105
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 174 ASFNGLSSLKRLEIQSNKL----TGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQ 229
++ L++L L + N+L G F +L +LK L ++ ++ + L T+L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL-TNLTY 137
Query: 230 ISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSH-PSLQQLTLSFNQFTSI 288
+ + +N LQ L+ L +DL +N+L S+P VF L+QL+L+ NQ S+
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKSV 196
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 208 LDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPS 267
+D S +++ +P +PT+ + + +N + P L+ L +DL +N+L+ +P+
Sbjct: 14 VDCSGKSLA-SVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPA 71
Query: 268 FVFSH-PSLQQLTLSFNQFTSIQQPA 292
VF L QL+L+ NQ SI + A
Sbjct: 72 GVFDKLTQLTQLSLNDNQLKSIPRGA 97
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 208 LDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPS 267
+D S +++ +P +PT+ + + +N + P L+ L +DL +N+L+ +P+
Sbjct: 14 VDCSGKSLAS-VPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPA 71
Query: 268 FVFSH-PSLQQLTLSFNQFTSIQQPA 292
VF L QL+L+ NQ SI + A
Sbjct: 72 GVFDKLTQLTQLSLNDNQLKSIPRGA 97
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 173 PASFNGLSSLKRLEIQSNKLTG----EFPELGSLKNLYFL-----DASDNAISGKLPAIL 223
P F GL++L+ L +Q N L F +LG+L +L+ ++A G
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGL----- 175
Query: 224 PTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFN 283
SL ++ + N++ P + + L L + L N LS + SLQ L L+ N
Sbjct: 176 -HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Query: 284 QFTSIQQPAP 293
+ + P
Sbjct: 235 PWVCDCRARP 244
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 217 GKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSH-PSL 275
+PA +PT ++ + NN + P L LQ + + NKL+ ++P+ VF L
Sbjct: 25 ASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQL 83
Query: 276 QQLTLSFNQFTSIQQPA 292
QL L+ N SI + A
Sbjct: 84 TQLDLNDNHLKSIPRGA 100
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 37/194 (19%)
Query: 174 ASFNGLSSLKRLEIQSNKLT----GEFPELGSLKNLYFLDASDNAIS----GKLPAILPT 225
+FNGL++L LE+ N+LT G F L LK L+ + +I ++P++
Sbjct: 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165
Query: 226 SLVQISMRNNNLQGTVPESLKLLSYLQV-------------------VDLSHNKLSGSVP 266
L ++ + +G E L L YL + +DLS N LS P
Sbjct: 166 DLGELKRLSYISEGAF-EGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP 224
Query: 267 SFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLP--LFMAL 324
LQ+L + +Q I++ A N L+ +++++N L +LP LF L
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDN-----LQSLVEINLAHNNLT-LLPHDLFTPL 278
Query: 325 MPKLSALSLENNKF 338
L + L +N +
Sbjct: 279 H-HLERIHLHHNPW 291
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 68/180 (37%), Gaps = 41/180 (22%)
Query: 44 NSVSPGSCLSSWDFSVDPCDSLFSEKFTCGFR-CDVSVSAL-----------SRVTELNL 91
NS + GS +F DP + F G + CD+S S + + + +L L
Sbjct: 248 NSYNMGSSFGHTNFK-DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306
Query: 92 DQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPAS 151
Q + W L +L L+LS NF NL +L L LS N +
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-----A 361
Query: 152 IGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLT----GEFPELGSLKNLYF 207
+G SF GL +LK L + +N+L G F L SL+ ++
Sbjct: 362 LG-------------------DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 212 DNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFS 271
DNA G T L+++++ N L + L L+V+DLS+N +
Sbjct: 316 DNAFWG------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369
Query: 272 HPSLQQLTLSFNQFTSI 288
P+L++L L NQ S+
Sbjct: 370 LPNLKELALDTNQLKSV 386
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 249 SYLQVVDLSHNKLSGSVPSFVFSH-PSLQQLTLSFNQFTSIQQPAPTNDNNIFS--SQLI 305
S ++ DLS +K+ + S VFSH L+QLTL+ N+ I D+N F + L+
Sbjct: 275 SGVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEINKI-------DDNAFWGLTHLL 326
Query: 306 AVDISNNELQGMLPLFMALMPKLSALSLENNKFTGM 341
+++S N L + + KL L L N +
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 178 GLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLP-AILPTSLVQISMRNNN 236
GL++L+ L I N + L +L L L A DN IS P A LP +L+++ ++NN
Sbjct: 149 GLTNLQYLSI-GNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLP-NLIEVHLKNNQ 206
Query: 237 LQGTVPESLKLLSYLQVVDLSHNKLS 262
+ P L S L +V L++ ++
Sbjct: 207 ISDVSP--LANTSNLFIVTLTNQTIT 230
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 21/87 (24%)
Query: 173 PASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISM 232
P SF+GLSSLK+L + +++++ NA G SLV++++
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSL---------------IERNAFDGL------ASLVELNL 273
Query: 233 RNNNLQGTVPESLKLLSYLQVVDLSHN 259
+NNL + L YL + L HN
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 7/141 (4%)
Query: 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSF-SGEIPA--SIGXXXXXXXXX 162
NL L+ L+LS++ S + L L L L N F G I S+
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482
Query: 163 XXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPA 221
+F L + +++ N+LT E L LK +Y L+ + N IS LP+
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPS 541
Query: 222 ILPTSLVQ--ISMRNNNLQGT 240
+LP Q I++R N L T
Sbjct: 542 LLPILSQQRTINLRQNPLDCT 562
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 31/114 (27%)
Query: 180 SSLKRLEIQSNKLT----GEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNN 235
SS RLE++SNKL G F +L T L ++S+ N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKL-------------------------TQLTKLSLSQN 62
Query: 236 NLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSH-PSLQQLTLSFNQFTSI 288
+Q L+ L ++ L NKL S+P+ VF L++L L NQ S+
Sbjct: 63 QIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSV 115
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 204 NLYFLDASDNAISGKLPAILPTSLVQISMRN---NNLQGTVPESLKLLSYLQVVDLSHNK 260
N+ L+ + N + +LPA T Q++ + N + PE + L L+V++L HN+
Sbjct: 36 NITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 261 LSG-SVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQ--LIAVDISNNEL 314
LS S +F F +L +L L N I+ NN F Q LI +D+S+N L
Sbjct: 95 LSQLSDKTFAFC-TNLTELHLMSNSIQKIK-------NNPFVKQKNLITLDLSHNGL 143
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 204 NLYFLDASDNAISGKLPAILPTSLVQISMRN---NNLQGTVPESLKLLSYLQVVDLSHNK 260
N+ L+ + N + +LPA T Q++ + N + PE + L L+V++L HN+
Sbjct: 26 NITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 261 LSG-SVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQ--LIAVDISNNEL 314
LS S +F F +L +L L N I+ NN F Q LI +D+S+N L
Sbjct: 85 LSQLSDKTFAFC-TNLTELHLMSNSIQKIK-------NNPFVKQKNLITLDLSHNGL 133
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 204 NLYFLDASDNAISGKLPAILPTSLVQISMRN---NNLQGTVPESLKLLSYLQVVDLSHNK 260
N+ L+ + N + +LPA T Q++ + N + PE + L L+V++L HN+
Sbjct: 31 NITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 261 LSG-SVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQ--LIAVDISNNEL 314
LS S +F F +L +L L N I+ NN F Q LI +D+S+N L
Sbjct: 90 LSQLSDKTFAFC-TNLTELHLMSNSIQKIK-------NNPFVKQKNLITLDLSHNGL 138
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 174 ASFNGLSSLKRLEIQSNKL----TGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQ 229
A+F GL+ L L + N+L G F +L L L ++N ++ LP + L Q
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL---ANNQLA-SLPLGVFDHLTQ 108
Query: 230 IS---MRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSH-PSLQQLTLSFNQF 285
+ + N L+ L+ L+ + L+ N+L S+P+ F +LQ L+LS NQ
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Query: 286 TSIQQPA 292
S+ A
Sbjct: 168 QSVPHGA 174
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 174 ASFNGLSSLKRLEIQSNKL----TGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQ 229
A+F GL+ L L + N+L G F +L L L ++N ++ LP + L Q
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL---ANNQLA-SLPLGVFDHLTQ 108
Query: 230 IS---MRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSH-PSLQQLTLSFNQF 285
+ + N L+ L+ L+ + L+ N+L S+P+ F +LQ L+LS NQ
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Query: 286 TSIQQPA 292
S+ A
Sbjct: 168 QSVPHGA 174
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 171 TIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQI 230
T+ L + L++ N+L P L +L+ L L ASDNA+ L ++
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQEL 513
Query: 231 SMRNNNLQGTV 241
+ NN LQ +
Sbjct: 514 LLCNNRLQQSA 524
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 171 TIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQI 230
T+ L + L++ N+L P L +L+ L L ASDNA+ L ++
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQEL 513
Query: 231 SMRNNNLQGTV 241
+ NN LQ +
Sbjct: 514 LLCNNRLQQSA 524
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 235 NNLQG-TVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAP 293
NNL+ V SL+ L ++ +N+L G +P+F S L L L++NQ T I P
Sbjct: 315 NNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFG-SEIKLASLNLAYNQITEI----P 369
Query: 294 TNDNNIFSSQLIAVDISNNELQGMLPLFMA 323
N F+ Q+ + ++N+L+ + +F A
Sbjct: 370 ANFCG-FTEQVENLSFAHNKLKYIPNIFDA 398
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 111/268 (41%), Gaps = 48/268 (17%)
Query: 83 LSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRN 142
+ +VT+ +L QA SL ++WN+ LDLS N S L+ T+L L LS N
Sbjct: 14 IEKVTDSSLKQA--LASLRQSAWNVK---ELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 143 SFSGEIPASIGXXXXXXXXXXXXXXXXGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSL 202
+ LS+L+ L++ +N + EL
Sbjct: 69 VLYETLD--------------------------LESLSTLRTLDLNNNYV----QELLVG 98
Query: 203 KNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLS 262
++ L A++N IS ++ I + NN + S +Q +DL N++
Sbjct: 99 PSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 263 G-SVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLF 321
+ S +L+ L L +N ++ + ++L +D+S+N+L M P F
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVK-------GQVVFAKLKTLDLSSNKLAFMGPEF 210
Query: 322 MALMPKLSALSLENNKFTGMIPTEYAIR 349
+ ++ +SL NNK ++ E A+R
Sbjct: 211 QS-AAGVTWISLRNNK---LVLIEKALR 234
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 24/133 (18%)
Query: 241 VPESLKLLSYLQVVDLSHNKLSGSVPSFVFSH-PSLQQLTLSFNQFTSIQQ----PAPTN 295
VP+SL SY ++DLSHN LS + + +L L LS N I P P
Sbjct: 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN- 89
Query: 296 DNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGP 355
L +D+S+N L + + + L L L NN + +
Sbjct: 90 --------LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE-------- 133
Query: 356 GIAPFQRLLLGGN 368
+A Q+L L N
Sbjct: 134 DMAQLQKLYLSQN 146
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 88 ELNLDQAGYSGSLSTTSWNLPYL-----ETLDLSNNFFSGSIPESLSNL 131
++ + G SG++S + PY E LDL + + G +PE+ + L
Sbjct: 519 HVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPENKAGL 567
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 88 ELNLDQAGYSGSLSTTSWNLPYL-----ETLDLSNNFFSGSIPESLSNL 131
++ + G SG++S + PY E LDL + + G +PE+ + L
Sbjct: 519 HVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPENKAGL 567
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 88 ELNLDQAGYSGSLSTTSWNLPYL-----ETLDLSNNFFSGSIPESLSNL 131
++ + G SG++S + PY E LDL + + G +PE+ + L
Sbjct: 294 HVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPENKAGL 342
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 217 GKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQ 276
+PA +PT+ + + +N + P L L+ + L N+L G++P VF SL
Sbjct: 32 ASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFD--SLT 88
Query: 277 QLT---LSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSL 333
QLT L NQ T + P+ D + +L + N+L LP + + L+ L+L
Sbjct: 89 QLTVLDLGTNQLTVL--PSAVFDRLVHLKELF---MCCNKLTE-LPRGIERLTHLTHLAL 142
Query: 334 ENNKFTGM 341
+ N+ +
Sbjct: 143 DQNQLKSI 150
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 70 FTCGFRCDVSVSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLD-LSNNFFSGSI 124
FT G +V + R+ E DQA S WN P +E + LS N F G +
Sbjct: 33 FTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKV 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,021,516
Number of Sequences: 62578
Number of extensions: 421532
Number of successful extensions: 1467
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 297
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)