Query 036985
Match_columns 424
No_of_seqs 550 out of 4198
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.1E-44 4.6E-49 387.7 30.6 377 24-424 24-421 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.5E-39 1.6E-43 344.7 23.0 332 82-422 116-467 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-35 2.5E-40 278.8 5.2 324 84-422 78-431 (873)
4 KOG4194 Membrane glycoprotein 100.0 1E-34 2.2E-39 272.4 8.7 322 87-423 55-381 (873)
5 KOG0444 Cytoskeletal regulator 100.0 3.1E-34 6.8E-39 271.1 -7.2 317 82-419 53-374 (1255)
6 KOG0444 Cytoskeletal regulator 100.0 2.1E-32 4.6E-37 258.8 -2.8 317 82-420 5-352 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 2.1E-31 4.6E-36 240.2 -6.9 329 74-421 127-542 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 2.6E-28 5.5E-33 220.3 -6.7 311 83-418 182-562 (565)
9 KOG0618 Serine/threonine phosp 99.9 6.7E-26 1.5E-30 223.7 2.4 318 85-422 46-467 (1081)
10 PLN03210 Resistant to P. syrin 99.9 1.5E-22 3.4E-27 219.4 24.4 323 81-416 555-902 (1153)
11 PRK15387 E3 ubiquitin-protein 99.9 3.4E-23 7.3E-28 210.1 16.0 256 86-396 203-458 (788)
12 PRK15387 E3 ubiquitin-protein 99.9 1.1E-22 2.3E-27 206.5 18.8 243 85-378 223-465 (788)
13 PLN03210 Resistant to P. syrin 99.9 2.7E-22 5.8E-27 217.5 23.2 319 84-421 532-884 (1153)
14 KOG4237 Extracellular matrix p 99.9 1.5E-25 3.3E-30 202.1 -2.8 251 84-339 67-359 (498)
15 PRK15370 E3 ubiquitin-protein 99.9 1.8E-21 4E-26 198.6 21.1 330 20-396 54-428 (754)
16 KOG0618 Serine/threonine phosp 99.9 1.7E-24 3.7E-29 213.9 -2.4 244 85-344 22-327 (1081)
17 PRK15370 E3 ubiquitin-protein 99.9 2.9E-21 6.4E-26 197.1 14.8 251 84-371 178-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 9.9E-22 2.2E-26 185.6 -0.0 284 88-394 2-318 (319)
19 KOG4237 Extracellular matrix p 99.8 5.7E-22 1.2E-26 179.2 -5.0 128 109-236 68-199 (498)
20 cd00116 LRR_RI Leucine-rich re 99.8 2.8E-20 6E-25 175.7 1.3 284 112-419 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 1.7E-19 3.7E-24 145.5 -5.3 155 82-262 31-186 (264)
22 KOG0617 Ras suppressor protein 99.7 2.5E-18 5.3E-23 138.9 -2.4 165 178-381 31-195 (264)
23 PLN03150 hypothetical protein; 99.6 1.9E-14 4.2E-19 146.5 13.6 162 22-193 365-528 (623)
24 KOG1909 Ran GTPase-activating 99.4 2.1E-14 4.5E-19 128.8 -2.9 90 103-193 25-133 (382)
25 KOG1909 Ran GTPase-activating 99.4 4.9E-14 1.1E-18 126.4 -1.0 247 82-338 28-310 (382)
26 KOG0532 Leucine-rich repeat (L 99.4 4.8E-14 1E-18 133.8 -1.9 174 206-402 78-253 (722)
27 KOG1259 Nischarin, modulator o 99.3 2.2E-13 4.8E-18 119.8 1.3 203 177-400 211-416 (490)
28 COG4886 Leucine-rich repeat (L 99.3 2.3E-12 4.9E-17 125.4 7.4 197 112-320 97-295 (394)
29 COG4886 Leucine-rich repeat (L 99.3 4.8E-12 1E-16 123.1 7.9 199 135-345 96-296 (394)
30 KOG0532 Leucine-rich repeat (L 99.3 1.5E-13 3.2E-18 130.5 -3.4 172 227-421 77-248 (722)
31 KOG3207 Beta-tubulin folding c 99.3 6.3E-13 1.4E-17 122.6 -0.5 210 130-340 119-340 (505)
32 KOG3207 Beta-tubulin folding c 99.2 1.1E-12 2.4E-17 121.0 0.3 208 153-371 118-339 (505)
33 PF14580 LRR_9: Leucine-rich r 99.2 1.1E-11 2.4E-16 104.4 4.1 84 245-333 60-147 (175)
34 KOG1259 Nischarin, modulator o 99.2 3.6E-12 7.7E-17 112.3 0.5 130 202-341 283-414 (490)
35 PLN03150 hypothetical protein; 99.1 1.1E-10 2.3E-15 119.3 8.9 107 304-419 420-527 (623)
36 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.2E-15 98.6 7.1 125 246-389 16-146 (175)
37 KOG4658 Apoptotic ATPase [Sign 99.1 3.7E-11 8E-16 125.4 4.3 107 84-191 545-653 (889)
38 KOG0531 Protein phosphatase 1, 99.1 7.9E-12 1.7E-16 122.0 -1.9 242 84-341 72-320 (414)
39 KOG0531 Protein phosphatase 1, 99.1 9.3E-12 2E-16 121.5 -2.1 128 106-238 70-199 (414)
40 KOG4658 Apoptotic ATPase [Sign 99.0 2.2E-10 4.7E-15 119.7 6.3 128 84-214 523-653 (889)
41 PF13855 LRR_8: Leucine rich r 98.9 9.2E-10 2E-14 76.3 3.5 57 110-166 3-59 (61)
42 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 3E-14 75.4 3.8 61 132-192 1-61 (61)
43 KOG2982 Uncharacterized conser 98.8 8.7E-10 1.9E-14 97.4 -0.4 200 131-334 70-287 (418)
44 COG5238 RNA1 Ran GTPase-activa 98.7 1E-09 2.3E-14 95.7 -3.6 268 106-398 28-318 (388)
45 KOG2120 SCF ubiquitin ligase, 98.6 5.8E-10 1.3E-14 98.5 -5.9 152 133-284 186-349 (419)
46 KOG1859 Leucine-rich repeat pr 98.6 9.2E-10 2E-14 107.9 -6.6 128 225-371 164-292 (1096)
47 KOG1859 Leucine-rich repeat pr 98.5 6.3E-10 1.4E-14 109.0 -9.4 195 84-285 84-291 (1096)
48 KOG4579 Leucine-rich repeat (L 98.5 1.4E-08 3E-13 79.7 -1.7 87 304-401 55-141 (177)
49 KOG2120 SCF ubiquitin ligase, 98.4 4.8E-09 1E-13 92.8 -5.4 179 181-368 186-373 (419)
50 COG5238 RNA1 Ran GTPase-activa 98.3 1.4E-07 3.1E-12 82.5 1.4 246 152-420 26-316 (388)
51 KOG1644 U2-associated snRNP A' 98.2 2.7E-06 5.9E-11 71.5 5.3 105 225-335 42-149 (233)
52 KOG2982 Uncharacterized conser 98.1 6.2E-07 1.3E-11 79.6 0.5 206 133-342 46-265 (418)
53 PF12799 LRR_4: Leucine Rich r 98.1 2.1E-06 4.5E-11 54.6 2.6 40 359-400 2-41 (44)
54 KOG4579 Leucine-rich repeat (L 98.1 2.4E-07 5.1E-12 72.9 -2.5 85 106-193 51-136 (177)
55 PF12799 LRR_4: Leucine Rich r 98.0 8.2E-06 1.8E-10 51.9 3.6 38 250-288 2-39 (44)
56 KOG1644 U2-associated snRNP A' 98.0 1.6E-05 3.5E-10 67.0 6.0 59 109-169 43-101 (233)
57 PF08263 LRRNT_2: Leucine rich 98.0 1.6E-05 3.5E-10 50.3 4.5 40 28-77 2-43 (43)
58 PRK15386 type III secretion pr 97.9 4.1E-05 8.9E-10 72.8 8.7 71 84-167 52-123 (426)
59 PRK15386 type III secretion pr 97.9 8E-05 1.7E-09 70.8 10.2 136 104-259 48-187 (426)
60 KOG3665 ZYG-1-like serine/thre 97.8 1.2E-05 2.7E-10 82.5 3.8 134 247-391 146-283 (699)
61 KOG3665 ZYG-1-like serine/thre 97.6 2.6E-05 5.6E-10 80.1 2.6 83 107-191 147-231 (699)
62 KOG4341 F-box protein containi 97.6 2.4E-06 5.2E-11 79.4 -5.5 84 84-167 138-227 (483)
63 KOG4341 F-box protein containi 97.5 4.2E-06 9.2E-11 77.8 -4.8 276 108-394 138-437 (483)
64 KOG2739 Leucine-rich acidic nu 97.4 5.9E-05 1.3E-09 66.3 1.6 40 106-145 63-104 (260)
65 PF13306 LRR_5: Leucine rich r 97.4 0.00075 1.6E-08 54.2 7.4 102 83-189 11-112 (129)
66 PF13306 LRR_5: Leucine rich r 97.3 0.00091 2E-08 53.7 7.5 84 103-189 7-90 (129)
67 KOG2739 Leucine-rich acidic nu 97.3 0.00014 3.1E-09 63.9 2.1 85 245-333 61-150 (260)
68 KOG2123 Uncharacterized conser 97.0 2.9E-05 6.3E-10 68.6 -4.8 99 226-332 20-123 (388)
69 KOG2123 Uncharacterized conser 96.7 4.6E-05 9.9E-10 67.4 -5.6 99 107-209 18-123 (388)
70 KOG4308 LRR-containing protein 96.5 1E-05 2.2E-10 79.5 -12.4 63 156-218 87-159 (478)
71 KOG4308 LRR-containing protein 96.3 3.4E-05 7.5E-10 75.9 -10.1 189 180-373 87-305 (478)
72 PF00560 LRR_1: Leucine Rich R 96.0 0.0018 3.9E-08 34.2 -0.1 19 360-379 2-20 (22)
73 PF13504 LRR_7: Leucine rich r 96.0 0.0041 8.9E-08 30.5 1.2 16 384-399 2-17 (17)
74 PF00560 LRR_1: Leucine Rich R 95.8 0.0036 7.9E-08 33.0 0.6 18 385-402 2-19 (22)
75 KOG1947 Leucine rich repeat pr 95.6 0.0014 3.1E-08 65.4 -2.7 36 304-339 403-440 (482)
76 KOG0473 Leucine-rich repeat pr 94.6 0.00065 1.4E-08 58.8 -7.0 87 104-193 38-124 (326)
77 smart00370 LRR Leucine-rich re 94.5 0.029 6.3E-07 30.8 1.8 22 383-404 2-23 (26)
78 smart00369 LRR_TYP Leucine-ric 94.5 0.029 6.3E-07 30.8 1.8 22 383-404 2-23 (26)
79 KOG0473 Leucine-rich repeat pr 93.2 0.0071 1.5E-07 52.5 -3.3 85 322-418 38-122 (326)
80 KOG3864 Uncharacterized conser 92.9 0.032 7E-07 47.5 0.3 86 302-394 101-187 (221)
81 KOG1947 Leucine rich repeat pr 92.5 0.051 1.1E-06 54.2 1.1 38 300-337 241-280 (482)
82 smart00364 LRR_BAC Leucine-ric 92.1 0.099 2.1E-06 28.6 1.4 18 383-400 2-19 (26)
83 KOG3864 Uncharacterized conser 91.7 0.018 3.8E-07 49.1 -2.7 85 250-337 102-187 (221)
84 PF13516 LRR_6: Leucine Rich r 91.6 0.061 1.3E-06 28.9 0.3 17 359-375 3-19 (24)
85 PF13516 LRR_6: Leucine Rich r 90.3 0.1 2.2E-06 28.0 0.3 20 326-345 2-21 (24)
86 smart00369 LRR_TYP Leucine-ric 88.4 0.44 9.5E-06 26.0 2.1 14 156-169 2-15 (26)
87 smart00370 LRR Leucine-rich re 88.4 0.44 9.5E-06 26.0 2.1 14 156-169 2-15 (26)
88 KOG4242 Predicted myosin-I-bin 87.9 2.6 5.6E-05 40.9 8.0 22 131-152 164-185 (553)
89 KOG3763 mRNA export factor TAP 81.6 1.4 3E-05 43.5 3.3 67 301-373 217-285 (585)
90 KOG4242 Predicted myosin-I-bin 75.8 12 0.00026 36.6 7.4 228 109-339 215-481 (553)
91 KOG3763 mRNA export factor TAP 75.7 1.6 3.5E-05 43.1 1.8 66 246-316 215-284 (585)
92 smart00365 LRR_SD22 Leucine-ri 75.1 2.6 5.7E-05 23.1 1.8 14 274-287 3-16 (26)
93 smart00368 LRR_RI Leucine rich 73.1 2.3 5E-05 23.7 1.3 11 328-338 4-14 (28)
94 smart00367 LRR_CC Leucine-rich 45.4 11 0.00023 20.4 0.8 10 359-368 3-12 (26)
95 PF02950 Conotoxin: Conotoxin; 27.5 25 0.00054 24.8 0.5 14 3-16 2-15 (75)
96 TIGR00864 PCC polycystin catio 24.8 52 0.0011 39.7 2.5 32 279-315 1-32 (2740)
97 PF05725 FNIP: FNIP Repeat; I 23.9 1.3E+02 0.0027 18.6 3.2 7 225-231 34-40 (44)
98 PF05399 EVI2A: Ectropic viral 23.3 1.4E+02 0.0031 25.8 4.2 36 4-39 131-166 (227)
99 TIGR00864 PCC polycystin catio 21.3 68 0.0015 38.8 2.6 32 138-169 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-44 Score=387.70 Aligned_cols=377 Identities=33% Similarity=0.500 Sum_probs=256.0
Q ss_pred cCCCHhHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeecCCCCCCCceeEEEeCCCCCccccCCC
Q 036985 24 SKTYWGDIQVMKELKNSLDPNSVSPGSCLSSWDFSVDPCDSLFSEKFTCGFRCDVSVSALSRVTELNLDQAGYSGSLSTT 103 (424)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~c~~~~~~~~~l~~L~L~~~~l~~~~~~~ 103 (424)
+...+.|..||.+||+++. +|...+.+|+...++|.| .|+.|+. .++++.|+++++.+++.++..
T Consensus 24 ~~~~~~~~~~l~~~~~~~~----~~~~~~~~w~~~~~~c~w-------~gv~c~~----~~~v~~L~L~~~~i~~~~~~~ 88 (968)
T PLN00113 24 SMLHAEELELLLSFKSSIN----DPLKYLSNWNSSADVCLW-------QGITCNN----SSRVVSIDLSGKNISGKISSA 88 (968)
T ss_pred cCCCHHHHHHHHHHHHhCC----CCcccCCCCCCCCCCCcC-------cceecCC----CCcEEEEEecCCCccccCChH
Confidence 3346689999999999983 455667899877889987 7999974 357999999999888888888
Q ss_pred cCCCCCCcEEEccCCCCCCCcchhcC-CCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCC
Q 036985 104 SWNLPYLETLDLSNNFFSGSIPESLS-NLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSL 182 (424)
Q Consensus 104 ~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 182 (424)
+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+.+.+|..++++++|
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 88899999999999988877776554 788888888888887766664 346677777777777776677777777777
Q ss_pred cEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCC
Q 036985 183 KRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHN 259 (424)
Q Consensus 183 ~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 259 (424)
++|++++|.+.+..|. +.++++|++|++++|.+.+..|..+. .+|++|++++|.+.+.+|..++.+++|++|++++|
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 7777777776665555 66677777777777777666665554 66677777777766666666666677777777776
Q ss_pred cCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCc
Q 036985 260 KLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFT 339 (424)
Q Consensus 260 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 339 (424)
.+.+.+|..+..+++|++|++++|++.+. .+..+ ..+++|++|++++|.+.+.+|..+..+++|+.|++++|.++
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l----~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGP-IPPSI----FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeecc-CchhH----hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 66666666666666666666666666542 22222 34455555555555555555555555555555555555555
Q ss_pred ccCchhHHhhcCCCC----------------CCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCC-CCCCcc
Q 036985 340 GMIPTEYAIRVAVPG----------------PGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLY-RCPFSF 402 (424)
Q Consensus 340 ~~~~~~~~~~~~l~~----------------~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~-~ip~~~ 402 (424)
+.+|..+..+.++.. ..+++|+.|++++|++++.+|..+..+ ++|+.|++++|.++ .+|..+
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSL 400 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHHH
Confidence 555555444433000 112236666666666666666666666 36666666666665 556555
Q ss_pred ccccCCCcccccccCccCCCCC
Q 036985 403 FFCQGARQKSLVECNRFTPVIP 424 (424)
Q Consensus 403 ~~~~~~l~~l~l~~n~l~~~~p 424 (424)
..+.. |+.+++++|++++.+|
T Consensus 401 ~~~~~-L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 401 GACRS-LRRVRLQDNSFSGELP 421 (968)
T ss_pred hCCCC-CCEEECcCCEeeeECC
Confidence 55555 7788888887776654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.5e-39 Score=344.73 Aligned_cols=332 Identities=31% Similarity=0.444 Sum_probs=220.3
Q ss_pred CCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 82 ALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
.+++|++|++++|.+++.+|. ..+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 567788888888888776663 456777777887777777777777777777777777777777777777777777777
Q ss_pred ecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCC
Q 036985 162 YLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQ 238 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~ 238 (424)
++++|.+.+.+|..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..|..+. ++|++|++++|.+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 7777777777777777777777777777777766665 77777777777777777766666655 67777777777777
Q ss_pred CCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCC
Q 036985 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGML 318 (424)
Q Consensus 239 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 318 (424)
+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++. .+..+ ..+++|++|++++|.+.+.+
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~-~~~~~----~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK-IPVAL----TSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc-CChhH----hcCCCCCEEECcCCCCcCcC
Confidence 66777777777777777777777766777677777777777777776652 22222 44566666666666666666
Q ss_pred hhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCC----------------CCCCCCccEEEccCCcCccccChhhhhhc
Q 036985 319 PLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVP----------------GPGIAPFQRLLLGGNYLFGAIPRSLLELQ 382 (424)
Q Consensus 319 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~----------------~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~ 382 (424)
|..++.+++|+.|++++|++++.+|..+.....+. ...+++|+.|++++|++++.+|..+..+
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l- 427 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL- 427 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC-
Confidence 66666666666666666666666665554433210 0234446666666666666666666666
Q ss_pred cCCcEEEccCCCCCCC-CCccccccCCCcccccccCccCCC
Q 036985 383 PGSANVRLADNCLYRC-PFSFFFCQGARQKSLVECNRFTPV 422 (424)
Q Consensus 383 ~~L~~L~l~~N~l~~i-p~~~~~~~~~l~~l~l~~n~l~~~ 422 (424)
++|+.|++++|.++.. |..++.+. +|+.+++++|++.+.
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMP-SLQMLSLARNKFFGG 467 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCC-CCcEEECcCceeeee
Confidence 3666666666666532 22222222 244444444444443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-35 Score=278.80 Aligned_cols=324 Identities=23% Similarity=0.276 Sum_probs=217.1
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
...+.|++++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+..-.++++.++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 34566777777777666666677777777777777666 55654444445666666666655444444545555555555
Q ss_pred ccCcCC------------------------CCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCC
Q 036985 164 DYNNLE------------------------GTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGK 218 (424)
Q Consensus 164 ~~n~l~------------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~ 218 (424)
+.|.++ ..-...|..+.+|..|.|+.|+++..++. |.++++|+.|+|..|++...
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 555444 44444444444555555555555533333 44555555555555555433
Q ss_pred CCCccc--cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCC
Q 036985 219 LPAILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTND 296 (424)
Q Consensus 219 ~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~ 296 (424)
-...|. ++|+.|.+..|.+.......|..+.++++|+|+.|++...--.++.++..|+.|++++|.|..+....+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--- 313 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--- 313 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh---
Confidence 222333 555556666666655555566677777777777777776666677777778888888887777654433
Q ss_pred CcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccCh
Q 036985 297 NNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPR 376 (424)
Q Consensus 297 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~ 376 (424)
..+++|++|+|++|+++...+..|..+..|+.|+|++|.+...-...|..+.+ |++|||++|.++..+.+
T Consensus 314 --sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss--------L~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 314 --SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS--------LHKLDLRSNELSWCIED 383 (873)
T ss_pred --hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh--------hhhhcCcCCeEEEEEec
Confidence 56778888888888888777777888888888888888877655556665555 99999999999766554
Q ss_pred h---hhhhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccCCC
Q 036985 377 S---LLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTPV 422 (424)
Q Consensus 377 ~---~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~~ 422 (424)
. |..+ |+|+.|.+.||+|.+||...|.....|+.|+|.+|.|..+
T Consensus 384 aa~~f~gl-~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 384 AAVAFNGL-PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred chhhhccc-hhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 3 5566 6999999999999999999999988899999999988654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1e-34 Score=272.38 Aligned_cols=322 Identities=20% Similarity=0.199 Sum_probs=280.8
Q ss_pred eEEEeCCCCCccccCCCcCC--CCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecc
Q 036985 87 TELNLDQAGYSGSLSTTSWN--LPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLD 164 (424)
Q Consensus 87 ~~L~L~~~~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~ 164 (424)
..+++++..+....-..+.. .+.-+.|++++|++...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 45666666554321111111 134567999999999888999999999999999999999 788866667779999999
Q ss_pred cCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCC
Q 036985 165 YNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTV 241 (424)
Q Consensus 165 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~ 241 (424)
+|.|...-.+.+..++.|+.|||+.|.++..... +..-.++++|+|++|.|+......|. .+|..|.|+.|+++...
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 9999988889999999999999999999965554 77778999999999999987777776 79999999999999888
Q ss_pred hhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhh
Q 036985 242 PESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLF 321 (424)
Q Consensus 242 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 321 (424)
+..|.++++|+.|+|..|+|.-.--..|.++++|+.|.+..|.+..+....|. .+.++++|+|+.|+++..-..+
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy-----~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY-----GLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee-----eecccceeecccchhhhhhccc
Confidence 88999999999999999999844356788999999999999999998777764 6889999999999999888889
Q ss_pred hcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCc
Q 036985 322 MALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFS 401 (424)
Q Consensus 322 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~ 401 (424)
+-+++.|+.|++++|.|...-++.+..+.+ |+.|+|++|+|+..-+..|..+. .|++|+|++|.++.+.+.
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~Wsftqk--------L~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e~ 359 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQK--------LKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAEG 359 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhccc--------ceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHhh
Confidence 999999999999999999888888887777 99999999999988888999995 999999999999999999
Q ss_pred cccccCCCcccccccCccCCCC
Q 036985 402 FFFCQGARQKSLVECNRFTPVI 423 (424)
Q Consensus 402 ~~~~~~~l~~l~l~~n~l~~~~ 423 (424)
.|.+.++|++|+|+.|.++..|
T Consensus 360 af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEEEE
Confidence 9999999999999999987653
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.1e-34 Score=271.13 Aligned_cols=317 Identities=27% Similarity=0.333 Sum_probs=272.1
Q ss_pred CCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCC-cchhcCCCcCCceEEcccCcccccCCccccCCCcCce
Q 036985 82 ALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGS-IPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEE 160 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 160 (424)
.+.+++.|.+.+|++. .+-..+..++.|+.+++..|++... +|..+..+..|..||||+|++. +.|..+.+-.++-+
T Consensus 53 ~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIV 130 (1255)
T ss_pred HHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEE
Confidence 4567888888888876 3455677889999999998888533 6778889999999999999998 78888888899999
Q ss_pred EecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcC-
Q 036985 161 LYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNL- 237 (424)
Q Consensus 161 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l- 237 (424)
|+|++|+|..+....|.+++.|-.||+++|++...+|...++..|++|+|++|.+....-..++ ++|..|.+++.+-
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 9999999985555566788999999999999998888888999999999999987654444444 7888888888553
Q ss_pred CCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCC
Q 036985 238 QGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGM 317 (424)
Q Consensus 238 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 317 (424)
...+|.++..+.+|..+|+|.|++. .+|+.+..+++|+.|+|++|+|+++.... ..-.+|++|++|.|+++ .
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~------~~W~~lEtLNlSrNQLt-~ 282 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTE------GEWENLETLNLSRNQLT-V 282 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccH------HHHhhhhhhccccchhc-c
Confidence 3467888999999999999999998 89999999999999999999999865433 34578999999999999 7
Q ss_pred ChhhhcCCCCCCEEeccCCcCc-ccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCC
Q 036985 318 LPLFMALMPKLSALSLENNKFT-GMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLY 396 (424)
Q Consensus 318 ~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~ 396 (424)
+|.++..+++|+.|.+.+|+++ .-+|..++++.+ |+.+..++|.+. .+|++++.+ +.|+.|.|+.|.+.
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~--------Levf~aanN~LE-lVPEglcRC-~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ--------LEVFHAANNKLE-LVPEGLCRC-VKLQKLKLDHNRLI 352 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhh--------hHHHHhhccccc-cCchhhhhh-HHHHHhccccccee
Confidence 8999999999999999999887 358999999988 999999999996 899999999 59999999999999
Q ss_pred CCCCccccccCCCcccccccCcc
Q 036985 397 RCPFSFFFCQGARQKSLVECNRF 419 (424)
Q Consensus 397 ~ip~~~~~~~~~l~~l~l~~n~l 419 (424)
++|+.+..+.. ++.|++..|.=
T Consensus 353 TLPeaIHlL~~-l~vLDlreNpn 374 (1255)
T KOG0444|consen 353 TLPEAIHLLPD-LKVLDLRENPN 374 (1255)
T ss_pred echhhhhhcCC-cceeeccCCcC
Confidence 99999999988 99999988863
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.1e-32 Score=258.81 Aligned_cols=317 Identities=25% Similarity=0.343 Sum_probs=225.1
Q ss_pred CCCceeEEEeCCCCCcc-ccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCce
Q 036985 82 ALSRVTELNLDQAGYSG-SLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEE 160 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 160 (424)
-++-++.+|+++|.++| ..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..++.++.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 35667788888888874 57777778888888888888877 77888888888888888888877 45556777888888
Q ss_pred EecccCcCCC-CchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc---cCCcEEEcccCc
Q 036985 161 LYLDYNNLEG-TIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP---TSLVQISMRNNN 236 (424)
Q Consensus 161 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~~L~~L~l~~n~ 236 (424)
+++.+|++.. -+|..+..+..|..||+++|++...+..+..-+++.+|+|++|+|.. +|..+. ..|-.|||++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccch
Confidence 8888887763 36777778888888888888888655557777888888888888874 444433 667778888888
Q ss_pred CCCCChhhhcCCCCCcEEEeeCCcCCCC-------------------------cCccccCCCCCCEEeccCCcCCCCCCC
Q 036985 237 LQGTVPESLKLLSYLQVVDLSHNKLSGS-------------------------VPSFVFSHPSLQQLTLSFNQFTSIQQP 291 (424)
Q Consensus 237 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-------------------------~~~~l~~~~~L~~L~L~~n~l~~~~~~ 291 (424)
+. .+|+.+..+.+|++|+|++|.+... +|..+..+.+|..++++.|.+..++.-
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPec 240 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPEC 240 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHH
Confidence 87 5666777788888888888876522 344444445555555555555443221
Q ss_pred CCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCc
Q 036985 292 APTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLF 371 (424)
Q Consensus 292 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~ 371 (424)
. -.+++|+.|+||+|+|+.. ....+...+|++|++++|+++ ..|..+++++. |+.|.+.+|+++
T Consensus 241 --l----y~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k--------L~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 241 --L----YKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTK--------LTKLYANNNKLT 304 (1255)
T ss_pred --H----hhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHH--------HHHHHhccCccc
Confidence 1 2345555666666655522 223344455666666666665 56666666666 888888888764
Q ss_pred -cccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccC
Q 036985 372 -GAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFT 420 (424)
Q Consensus 372 -~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~ 420 (424)
.-+|++++.+. +|+.+..++|.++-+|.++..|.+ |++|.|+||++-
T Consensus 305 FeGiPSGIGKL~-~Levf~aanN~LElVPEglcRC~k-L~kL~L~~NrLi 352 (1255)
T KOG0444|consen 305 FEGIPSGIGKLI-QLEVFHAANNKLELVPEGLCRCVK-LQKLKLDHNRLI 352 (1255)
T ss_pred ccCCccchhhhh-hhHHHHhhccccccCchhhhhhHH-HHHhccccccee
Confidence 34788888886 888888888888888999988988 999999999863
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=2.1e-31 Score=240.16 Aligned_cols=329 Identities=27% Similarity=0.334 Sum_probs=213.2
Q ss_pred eeecCCCCCCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCcccc
Q 036985 74 FRCDVSVSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIG 153 (424)
Q Consensus 74 ~~c~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~ 153 (424)
..|..+++.+-.+..++..+|+++ ..|+.+.++.++..+++.+|+++...|..+. ++.|++||...|.+. .+|+.++
T Consensus 127 ~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg 203 (565)
T KOG0472|consen 127 KELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELG 203 (565)
T ss_pred eecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhc
Confidence 344444555666777777777776 4566677777777777777777744443333 777777777777766 6777777
Q ss_pred CCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc-cCCcEEE
Q 036985 154 SLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP-TSLVQIS 231 (424)
Q Consensus 154 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~ 231 (424)
.+.+|+.|++..|.+. ..| .|..+..|++|+++.|++.-.+.+ ..+++++.+||+.+|+++.......- .+|+.||
T Consensus 204 ~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLD 281 (565)
T ss_pred chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhc
Confidence 7777777777777776 455 677777777777777777644444 55777777777777777643333322 6677777
Q ss_pred cccCcCCCCChhhhcCCCCCcEEEeeCCcCCC------------------------------------------------
Q 036985 232 MRNNNLQGTVPESLKLLSYLQVVDLSHNKLSG------------------------------------------------ 263 (424)
Q Consensus 232 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~------------------------------------------------ 263 (424)
+++|.++ ..|..++++ +|+.|.+.+|.+..
T Consensus 282 lSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~ 359 (565)
T KOG0472|consen 282 LSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIY 359 (565)
T ss_pred ccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchh
Confidence 7777777 455666666 67777777766540
Q ss_pred ----------------CcCccccCCC---CCCEEeccCCcCCCCCCCC------------------CCCCCcccCCCCcE
Q 036985 264 ----------------SVPSFVFSHP---SLQQLTLSFNQFTSIQQPA------------------PTNDNNIFSSQLIA 306 (424)
Q Consensus 264 ----------------~~~~~l~~~~---~L~~L~L~~n~l~~~~~~~------------------~~~~~~~~~~~L~~ 306 (424)
.+|+.++... -....+++.|++.+++... +.......+++|..
T Consensus 360 ~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 360 AIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTF 439 (565)
T ss_pred hhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhccee
Confidence 1122111111 1344455555554432110 00000134556666
Q ss_pred EEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCc
Q 036985 307 VDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSA 386 (424)
Q Consensus 307 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~ 386 (424)
|++++|-+. .+|..++.+..|+.|+++.|++. .+|........ ++.+-.++|++...-|+++.++. +|.
T Consensus 440 L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~--------lEtllas~nqi~~vd~~~l~nm~-nL~ 508 (565)
T KOG0472|consen 440 LDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT--------LETLLASNNQIGSVDPSGLKNMR-NLT 508 (565)
T ss_pred eecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHH--------HHHHHhccccccccChHHhhhhh-hcc
Confidence 666666555 45555666666666666666664 45555555444 56555666677655556688885 999
Q ss_pred EEEccCCCCCCCCCccccccCCCcccccccCccCC
Q 036985 387 NVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTP 421 (424)
Q Consensus 387 ~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~ 421 (424)
.||+.+|.+++||..++++.. ++.+++.+|+|++
T Consensus 509 tLDL~nNdlq~IPp~Lgnmtn-L~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 509 TLDLQNNDLQQIPPILGNMTN-LRHLELDGNPFRQ 542 (565)
T ss_pred eeccCCCchhhCChhhccccc-eeEEEecCCccCC
Confidence 999999999999999999999 9999999999995
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=2.6e-28 Score=220.32 Aligned_cols=311 Identities=25% Similarity=0.272 Sum_probs=216.4
Q ss_pred CCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCcccc-CCCcCceE
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIG-SLSSLEEL 161 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~-~l~~L~~L 161 (424)
+++++++|+..|.++ .+|+.++.+.+|+-|++..|+|. .+| .|.++..|+.+.++.|.|. .+|.+.. +++++.+|
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceee
Confidence 445555665555553 56666777777777777777776 455 5677777777777777666 5555543 77888888
Q ss_pred ecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCC-----------------------
Q 036985 162 YLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGK----------------------- 218 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~----------------------- 218 (424)
|+.+|+++ ..|+.+..+.+|.+||+++|.+++.++.++++ +|+.|.+.+|.+...
T Consensus 258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred eccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence 88888887 67788888888888888888888777778888 788888877765310
Q ss_pred ---------------CCCccc-----cCCcEEEcccCcCCC-------------------------CChhhhcCCCCCc-
Q 036985 219 ---------------LPAILP-----TSLVQISMRNNNLQG-------------------------TVPESLKLLSYLQ- 252 (424)
Q Consensus 219 ---------------~~~~~~-----~~L~~L~l~~n~l~~-------------------------~~~~~l~~l~~L~- 252 (424)
.+..+. .+.+.|++++-+++. ++|..+..++.+.
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 000011 233444444444442 2333332222222
Q ss_pred EEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEe
Q 036985 253 VVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALS 332 (424)
Q Consensus 253 ~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 332 (424)
.+++++|.+. .+|..++.+++|..|++++|-+.+++... +.+..|+.|+++.|.|. .+|..+.....++.+-
T Consensus 416 ~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~------~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtll 487 (565)
T KOG0472|consen 416 DLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEM------GSLVRLQTLNLSFNRFR-MLPECLYELQTLETLL 487 (565)
T ss_pred HHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhh------hhhhhhheecccccccc-cchHHHhhHHHHHHHH
Confidence 2334444443 67778888999999999999999865433 45677999999999998 7788888888899988
Q ss_pred ccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCccc
Q 036985 333 LENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKS 412 (424)
Q Consensus 333 L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l 412 (424)
.++|++...-+..+..+.+ |..|||.+|.+. .+|..+++++ +|++|.++||+|. .|......++....+
T Consensus 488 as~nqi~~vd~~~l~nm~n--------L~tLDL~nNdlq-~IPp~Lgnmt-nL~hLeL~gNpfr-~Pr~~iLmkgT~aiL 556 (565)
T KOG0472|consen 488 ASNNQIGSVDPSGLKNMRN--------LTTLDLQNNDLQ-QIPPILGNMT-NLRHLELDGNPFR-QPRHQILMKGTAAIL 556 (565)
T ss_pred hccccccccChHHhhhhhh--------cceeccCCCchh-hCChhhcccc-ceeEEEecCCccC-CCHHHHhccChHHHH
Confidence 8999998666666777766 999999999996 7999999997 9999999999998 776554444433333
Q ss_pred ccccCc
Q 036985 413 LVECNR 418 (424)
Q Consensus 413 ~l~~n~ 418 (424)
....++
T Consensus 557 ~ylrdr 562 (565)
T KOG0472|consen 557 SYLRDR 562 (565)
T ss_pred HHhccc
Confidence 333333
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=6.7e-26 Score=223.74 Aligned_cols=318 Identities=25% Similarity=0.363 Sum_probs=209.8
Q ss_pred ceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecc
Q 036985 85 RVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLD 164 (424)
Q Consensus 85 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~ 164 (424)
+|++|++++|.+. ..|..+..+.+|+.|+++.|.|. ..|.+..++.+|+++.|.+|.+. .+|..+..+.+|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 3788888887775 45666777777778888877776 56677777777777777777776 677777777777777777
Q ss_pred cCcCCCCchhhcCCCCCC----------------------------------------c-EEEeecccccccCCCCCCCC
Q 036985 165 YNNLEGTIPASFNGLSSL----------------------------------------K-RLEIQSNKLTGEFPELGSLK 203 (424)
Q Consensus 165 ~n~l~~~~~~~l~~l~~L----------------------------------------~-~L~l~~n~l~~~~~~l~~l~ 203 (424)
+|.+. .+|..+..++.+ + .|++.+|.+. ..++..+.
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--~~dls~~~ 199 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME--VLDLSNLA 199 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh--hhhhhhcc
Confidence 77765 344332222222 2 2444444443 11122222
Q ss_pred --------------------CcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCC
Q 036985 204 --------------------NLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSG 263 (424)
Q Consensus 204 --------------------~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 263 (424)
+|+.|+..+|.++.......+.++++++++.|+++ .+|+++..+.+|+.++..+|+++.
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~ 278 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA 278 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHh
Confidence 23333334444432222222367788888888887 455888888888888888877752
Q ss_pred ----------------------CcCccccCCCCCCEEeccCCcCCCCCCCCCC--------------------CCCcccC
Q 036985 264 ----------------------SVPSFVFSHPSLQQLTLSFNQFTSIQQPAPT--------------------NDNNIFS 301 (424)
Q Consensus 264 ----------------------~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~--------------------~~~~~~~ 301 (424)
.+|.......+|++|+|..|++...+...+. .......
T Consensus 279 lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~ 358 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNH 358 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhh
Confidence 2455555677888888888888775431110 0011234
Q ss_pred CCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCch-hHHhhcCCCCCCCCCccEEEccCCcCccccChhhhh
Q 036985 302 SQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPT-EYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLE 380 (424)
Q Consensus 302 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 380 (424)
+.|+.|++.+|.+++..-..+.++++|+.|+|++|++. .+|. .+.++.. |++|+||+|+++ .+|+.+..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~--------LeeL~LSGNkL~-~Lp~tva~ 428 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEE--------LEELNLSGNKLT-TLPDTVAN 428 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHH--------hHHHhcccchhh-hhhHHHHh
Confidence 56778888888888776667888888888888888887 4443 4444555 888888888886 67888888
Q ss_pred hccCCcEEEccCCCCCCCCCccccccCCCcccccccCccCCC
Q 036985 381 LQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTPV 422 (424)
Q Consensus 381 l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~~ 422 (424)
+ +.|++|...+|++..+| .+..... ++.+|++||.++-+
T Consensus 429 ~-~~L~tL~ahsN~l~~fP-e~~~l~q-L~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 429 L-GRLHTLRAHSNQLLSFP-ELAQLPQ-LKVLDLSCNNLSEV 467 (1081)
T ss_pred h-hhhHHHhhcCCceeech-hhhhcCc-ceEEecccchhhhh
Confidence 8 48888888888888888 5555554 78888888887654
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.5e-22 Score=219.39 Aligned_cols=323 Identities=17% Similarity=0.159 Sum_probs=166.0
Q ss_pred CCCCceeEEEeCCCC------CccccCCCcCCCC-CCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCcccc
Q 036985 81 SALSRVTELNLDQAG------YSGSLSTTSWNLP-YLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIG 153 (424)
Q Consensus 81 ~~~~~l~~L~L~~~~------l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~ 153 (424)
.++++++.|.+..+. +...+|..+..++ .|+.|++.++.+. .+|..| ...+|++|++++|.+. .++..+.
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~ 631 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVH 631 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccc
Confidence 456677777765442 2223444444443 4666666666655 455444 3456666666666665 4555566
Q ss_pred CCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc-cCCcEEE
Q 036985 154 SLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP-TSLVQIS 231 (424)
Q Consensus 154 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~ 231 (424)
.+++|++|+++++.....+| .+..+++|++|++++|......|. +..+++|+.|++++|.....+|.... ++|+.|+
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~ 710 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN 710 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence 66666666666654333444 355666666666666543333333 56666666666666543334444333 5666666
Q ss_pred cccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCC--CCCCCcccCCCCcEEEc
Q 036985 232 MRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPA--PTNDNNIFSSQLIAVDI 309 (424)
Q Consensus 232 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~--~~~~~~~~~~~L~~L~L 309 (424)
+++|......|.. ..+|++|++++|.+. .+|..+ .+++|++|++.++....+.... .........++|++|++
T Consensus 711 Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 711 LSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred CCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 6665443333322 245666666666655 344333 3455555555443221110000 00000012344555555
Q ss_pred cCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCC---C----------CCCCCCccEEEccCCcCccccCh
Q 036985 310 SNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAV---P----------GPGIAPFQRLLLGGNYLFGAIPR 376 (424)
Q Consensus 310 s~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l---~----------~~~~~~L~~L~Ls~N~l~~~~p~ 376 (424)
++|...+.+|..++++++|+.|++++|...+.+|... .+.++ . ....++|++|+|++|.++ .+|.
T Consensus 786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~ 863 (1153)
T PLN03210 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPW 863 (1153)
T ss_pred CCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChH
Confidence 5554444455555555555555555554333344322 11110 0 001234667777777775 5677
Q ss_pred hhhhhccCCcEEEccC-CCCCCCCCccccccCCCccccccc
Q 036985 377 SLLELQPGSANVRLAD-NCLYRCPFSFFFCQGARQKSLVEC 416 (424)
Q Consensus 377 ~~~~l~~~L~~L~l~~-N~l~~ip~~~~~~~~~l~~l~l~~ 416 (424)
++..+ ++|++|++++ |+++.+|..+..+.. |+.+++++
T Consensus 864 si~~l-~~L~~L~L~~C~~L~~l~~~~~~L~~-L~~L~l~~ 902 (1153)
T PLN03210 864 WIEKF-SNLSFLDMNGCNNLQRVSLNISKLKH-LETVDFSD 902 (1153)
T ss_pred HHhcC-CCCCEEECCCCCCcCccCcccccccC-CCeeecCC
Confidence 77777 4777777776 456677666555544 55555543
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.90 E-value=3.4e-23 Score=210.07 Aligned_cols=256 Identities=30% Similarity=0.377 Sum_probs=144.1
Q ss_pred eeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEeccc
Q 036985 86 VTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDY 165 (424)
Q Consensus 86 l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~ 165 (424)
-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++ .+|.. .++|++|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 445666666665 3454443 35666666666666 3443 2356666777666666 34432 24666666666
Q ss_pred CcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhh
Q 036985 166 NNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESL 245 (424)
Q Consensus 166 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 245 (424)
|.+. .+|.. ..+|+.|++++|+++..+. ..++|+.|++++|.+++. +. +...|+.|++++|.+++ +|..
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~L-p~-lp~~L~~L~Ls~N~L~~-LP~l- 340 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL-PA-LPSELCKLWAYNNQLTS-LPTL- 340 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCccccC-CC-CcccccccccccCcccc-cccc-
Confidence 6665 33332 2456666666666664322 235566667766666643 22 23456666666666653 3321
Q ss_pred cCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCC
Q 036985 246 KLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALM 325 (424)
Q Consensus 246 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 325 (424)
..+|+.|++++|+++ .+|.. .++|+.|++++|+++.++. ...+|+.|++++|.+++ +|.. .
T Consensus 341 --p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~---------l~~~L~~LdLs~N~Lt~-LP~l---~ 401 (788)
T PRK15387 341 --PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPA---------LPSGLKELIVSGNRLTS-LPVL---P 401 (788)
T ss_pred --ccccceEecCCCccC-CCCCC---CcccceehhhccccccCcc---------cccccceEEecCCcccC-CCCc---c
Confidence 135666666666666 34432 2456666666666665321 12356666666666663 3322 2
Q ss_pred CCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCC
Q 036985 326 PKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLY 396 (424)
Q Consensus 326 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~ 396 (424)
++|+.|++++|++++ +|.... . |+.|++++|+|+ .+|..+.++ ++|+.|++++|+|+
T Consensus 402 s~L~~LdLS~N~Lss-IP~l~~---~--------L~~L~Ls~NqLt-~LP~sl~~L-~~L~~LdLs~N~Ls 458 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPMLPS---G--------LLSLSVYRNQLT-RLPESLIHL-SSETTVNLEGNPLS 458 (788)
T ss_pred cCCCEEEccCCcCCC-CCcchh---h--------hhhhhhccCccc-ccChHHhhc-cCCCeEECCCCCCC
Confidence 456666666666653 443221 2 566666666665 566666666 36666666666665
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.90 E-value=1.1e-22 Score=206.45 Aligned_cols=243 Identities=28% Similarity=0.379 Sum_probs=102.2
Q ss_pred ceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecc
Q 036985 85 RVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLD 164 (424)
Q Consensus 85 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~ 164 (424)
+++.|++.+|.++. +|. ..++|++|++++|+++ .+|.. .++|++|++++|.++ .+|..+ .+|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEECc
Confidence 34455555554442 221 1244555555555544 22321 234445555555444 223211 334445555
Q ss_pred cCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhh
Q 036985 165 YNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPES 244 (424)
Q Consensus 165 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 244 (424)
+|+++ .+|. ..++|++|++++|.+++.... ...|+.|++++|.+++ +|. +..+|+.|++++|+++. +|..
T Consensus 291 ~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~-LP~-lp~~Lq~LdLS~N~Ls~-LP~l 360 (788)
T PRK15387 291 GNQLT-SLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-LPT-LPSGLQELSVSDNQLAS-LPTL 360 (788)
T ss_pred CCccc-cccc---cccccceeECCCCccccCCCC---cccccccccccCcccc-ccc-cccccceEecCCCccCC-CCCC
Confidence 55444 2222 123455555555554432111 1234444455554442 221 22345555555555442 2221
Q ss_pred hcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcC
Q 036985 245 LKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMAL 324 (424)
Q Consensus 245 l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 324 (424)
..+|+.|++++|.+. .+|.. ..+|+.|++++|++++++.. .++|+.|++++|.+++ +|..
T Consensus 361 ---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---------~s~L~~LdLS~N~Lss-IP~l--- 420 (788)
T PRK15387 361 ---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---------PSELKELMVSGNRLTS-LPML--- 420 (788)
T ss_pred ---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc---------ccCCCEEEccCCcCCC-CCcc---
Confidence 134444455555544 23321 13445555555554443210 1344455555555442 2321
Q ss_pred CCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhh
Q 036985 325 MPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSL 378 (424)
Q Consensus 325 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~ 378 (424)
..+|+.|++++|+++ .+|..+..+.. |+.|+|++|.+++..|..+
T Consensus 421 ~~~L~~L~Ls~NqLt-~LP~sl~~L~~--------L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 PSGLLSLSVYRNQLT-RLPESLIHLSS--------ETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhhccCccc-ccChHHhhccC--------CCeEECCCCCCCchHHHHH
Confidence 123444555555554 34444444433 5555555555554444444
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.7e-22 Score=217.54 Aligned_cols=319 Identities=18% Similarity=0.220 Sum_probs=231.9
Q ss_pred CceeEEEeCCCCCcc--ccCCCcCCCCCCcEEEccCCCC------CCCcchhcCCCc-CCceEEcccCcccccCCccccC
Q 036985 84 SRVTELNLDQAGYSG--SLSTTSWNLPYLETLDLSNNFF------SGSIPESLSNLT-RLIRLGLSRNSFSGEIPASIGS 154 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~--~~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~~l~-~L~~L~L~~n~i~~~~p~~~~~ 154 (424)
.+++.+.+.-..+.. ..+.+|..+++|+.|.+..+.. ...+|..|..++ +|+.|.+.++.+. .+|..| .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 455555554333322 2345688999999999976642 234677777765 6999999999988 778777 5
Q ss_pred CCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEc
Q 036985 155 LSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP--TSLVQISM 232 (424)
Q Consensus 155 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l 232 (424)
..+|++|++.+|.+. .++..+..+++|+.|+++++.....+|.+..+++|+.|++++|.....+|..+. ++|+.|++
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 789999999999987 678888999999999999887656777888999999999999876667777665 89999999
Q ss_pred ccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCC
Q 036985 233 RNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNN 312 (424)
Q Consensus 233 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n 312 (424)
++|..-..+|..+ ++++|+.|++++|...+..|.. ..+|++|++++|.++.++.. ..+++|++|++.++
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~-------~~l~~L~~L~l~~~ 757 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSN-------LRLENLDELILCEM 757 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccccc-------cccccccccccccc
Confidence 9976555666655 7899999999999766566643 46899999999999876432 24678899988875
Q ss_pred CCC-------CCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCC---------------CCCCCccEEEccCCcC
Q 036985 313 ELQ-------GMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPG---------------PGIAPFQRLLLGGNYL 370 (424)
Q Consensus 313 ~l~-------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~---------------~~~~~L~~L~Ls~N~l 370 (424)
... ...+......++|+.|++++|...+.+|..++.+.++.. ..+++|+.|++++|..
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSR 837 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCc
Confidence 322 122223344579999999999888889998887766110 1233444444444433
Q ss_pred ccccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCcccccc-cCccCC
Q 036985 371 FGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVE-CNRFTP 421 (424)
Q Consensus 371 ~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~-~n~l~~ 421 (424)
...+|.. . ++|++|++++|.++.+|.++..+.. |+.++++ ||++..
T Consensus 838 L~~~p~~---~-~nL~~L~Ls~n~i~~iP~si~~l~~-L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 838 LRTFPDI---S-TNISDLNLSRTGIEEVPWWIEKFSN-LSFLDMNGCNNLQR 884 (1153)
T ss_pred ccccccc---c-cccCEeECCCCCCccChHHHhcCCC-CCEEECCCCCCcCc
Confidence 2233321 1 3677788888888888888777766 8888875 466654
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=1.5e-25 Score=202.08 Aligned_cols=251 Identities=25% Similarity=0.273 Sum_probs=206.3
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEccc-CcccccCCccccCCCcCceEe
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSR-NSFSGEIPASIGSLSSLEELY 162 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~ 162 (424)
...++|+|..|+|+...+.+|+.+++|+.|||++|.|+.+.|++|.+++.|..|-+.+ |+|+..-...|+++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3568999999999988889999999999999999999989999999999988887766 899966667799999999999
Q ss_pred cccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCC------------CCCcc------
Q 036985 163 LDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGK------------LPAIL------ 223 (424)
Q Consensus 163 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~------------~~~~~------ 223 (424)
+..|.+.-...+.|..+++|..|.+.+|.+...... +..+..++.+.+..|.+... .+..+
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 999999988889999999999999999999866654 88888899998888773211 11100
Q ss_pred ------------------ccCCcEE--Ec-ccCcCCCCCh-hhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEecc
Q 036985 224 ------------------PTSLVQI--SM-RNNNLQGTVP-ESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLS 281 (424)
Q Consensus 224 ------------------~~~L~~L--~l-~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~ 281 (424)
...++.+ .+ +.+...+..| ..|..+++|+.|++++|.++++-+.+|.....++.|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 0111111 11 1122222223 458899999999999999999889999999999999999
Q ss_pred CCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCc
Q 036985 282 FNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFT 339 (424)
Q Consensus 282 ~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 339 (424)
.|++..+....+ ..+..|+.|+|.+|+|+...|.+|..+..|.+|+|-.|.+.
T Consensus 307 ~N~l~~v~~~~f-----~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 307 RNKLEFVSSGMF-----QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cchHHHHHHHhh-----hccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 999998766655 57889999999999999999999999999999999888664
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.88 E-value=1.8e-21 Score=198.55 Aligned_cols=330 Identities=22% Similarity=0.296 Sum_probs=216.2
Q ss_pred hhhccCCCHhHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCCCCC-C--------CcccceeecCCCCCCCceeEEE
Q 036985 20 WLAESKTYWGDIQVMKELKNSLDPNSVSPGSCLSSWDFSVDPCDSLFS-E--------KFTCGFRCDVSVSALSRVTELN 90 (424)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~-~--------~~~~~~~c~~~~~~~~~l~~L~ 90 (424)
++......+.|.+.+.+..+.+...+. -..--..|....+.|.-... . .-...|.|.+ +.++++.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~l~~p~~-~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~-----~~vt~l~ 127 (754)
T PRK15370 54 CHPPETASPEEIKSKFECLRMLAFPAY-ADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG-----KSVTYTR 127 (754)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcCCch-hhccccccCCCCcccccCCcchhhheeeecCCceEEecCC-----Ccccccc
Confidence 345677888999999988888742111 01112348888899975320 0 1123467765 5556655
Q ss_pred eCCCCCccc---------------------cC-------CCc-----CCCCCCcEEEccCCCCCCCcchhcCCCcCCceE
Q 036985 91 LDQAGYSGS---------------------LS-------TTS-----WNLPYLETLDLSNNFFSGSIPESLSNLTRLIRL 137 (424)
Q Consensus 91 L~~~~l~~~---------------------~~-------~~~-----~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 137 (424)
..+...... .+ ..+ .-..+...|+++++.++ .+|..+. +.|+.|
T Consensus 128 ~~g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L 204 (754)
T PRK15370 128 VTESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTL 204 (754)
T ss_pred cccccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEE
Confidence 544321100 00 000 01134677888888877 4565443 478888
Q ss_pred EcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCC
Q 036985 138 GLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISG 217 (424)
Q Consensus 138 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~ 217 (424)
++++|.++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++++|.+...+..+. .+|+.|++++|+++.
T Consensus 205 ~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~ 276 (754)
T PRK15370 205 ILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISC 276 (754)
T ss_pred EecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCc
Confidence 88888888 5666554 57888888888887 4565543 478888888888874433332 478888888888873
Q ss_pred CCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCC
Q 036985 218 KLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDN 297 (424)
Q Consensus 218 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 297 (424)
+|..+..+|+.|++++|+++. +|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.++.++.
T Consensus 277 -LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~LP~------- 342 (754)
T PRK15370 277 -LPENLPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTSLPA------- 342 (754)
T ss_pred -cccccCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCccccCCh-------
Confidence 565566788888888888874 344332 46888888888887 355433 2678888888888887542
Q ss_pred cccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChh
Q 036985 298 NIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRS 377 (424)
Q Consensus 298 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~ 377 (424)
...++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+.. . |+.|++++|+++ .+|..
T Consensus 343 -~l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~--s--------L~~LdLs~N~L~-~LP~s 406 (754)
T PRK15370 343 -SLPPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPA--A--------LQIMQASRNNLV-RLPES 406 (754)
T ss_pred -hhcCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHH--H--------HHHHhhccCCcc-cCchh
Confidence 12367888888888887 3555443 58888888888887 46665542 3 788888888886 56665
Q ss_pred hhhhc---cCCcEEEccCCCCC
Q 036985 378 LLELQ---PGSANVRLADNCLY 396 (424)
Q Consensus 378 ~~~l~---~~L~~L~l~~N~l~ 396 (424)
+..+. |.+..+++.+|+|.
T Consensus 407 l~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhcCCCccEEEeeCCCcc
Confidence 54431 57788888888875
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=1.7e-24 Score=213.92 Aligned_cols=244 Identities=27% Similarity=0.337 Sum_probs=161.4
Q ss_pred ceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecc
Q 036985 85 RVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLD 164 (424)
Q Consensus 85 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~ 164 (424)
.++.|+++.|.+-...-+++.+.-+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|++|.|.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 3788888888765433344445555999999999998 78889999999999999999999 788889999999999999
Q ss_pred cCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCC-------------------cCCCCCCCcccc
Q 036985 165 YNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDN-------------------AISGKLPAILPT 225 (424)
Q Consensus 165 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~ 225 (424)
+|.+. ..|.++..+++|++|++++|.+...+..+..+..+..+..++| .+.+.+.....
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~- 177 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY- 177 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh-
Confidence 99987 8899999999999999999998854443555555555555544 33333333222
Q ss_pred CCc-EEEcccCcCCCCChhhhcCCCCCc--------------------EEEeeCCcCCCCcCccccCCCCCCEEeccCCc
Q 036985 226 SLV-QISMRNNNLQGTVPESLKLLSYLQ--------------------VVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQ 284 (424)
Q Consensus 226 ~L~-~L~l~~n~l~~~~~~~l~~l~~L~--------------------~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~ 284 (424)
.++ .|++.+|.+... .+..+.+|+ .|+.++|.++...+ -....+|+++++++|+
T Consensus 178 ~l~~~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 178 NLTHQLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNN 252 (1081)
T ss_pred hhheeeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhh
Confidence 222 477777776621 233333333 33334444331111 1122456667777776
Q ss_pred CCCCCCCCCCCCCcccCCCCcEEEccCCCCCCC----------------------ChhhhcCCCCCCEEeccCCcCcccC
Q 036985 285 FTSIQQPAPTNDNNIFSSQLIAVDISNNELQGM----------------------LPLFMALMPKLSALSLENNKFTGMI 342 (424)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----------------------~~~~l~~l~~L~~L~L~~N~l~~~~ 342 (424)
++.++ .++ ..+.+|+.++..+|.++.. +|...+..+.|++|+|..|++. ..
T Consensus 253 l~~lp--~wi----~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~l 325 (1081)
T KOG0618|consen 253 LSNLP--EWI----GACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SL 325 (1081)
T ss_pred hhcch--HHH----HhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-cc
Confidence 66654 233 5567777777777776422 2223334566777777777765 34
Q ss_pred ch
Q 036985 343 PT 344 (424)
Q Consensus 343 ~~ 344 (424)
|+
T Consensus 326 p~ 327 (1081)
T KOG0618|consen 326 PD 327 (1081)
T ss_pred ch
Confidence 43
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.86 E-value=2.9e-21 Score=197.07 Aligned_cols=251 Identities=27% Similarity=0.415 Sum_probs=198.5
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
.+.+.|++++++++. +|..+. +.|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 567899999999884 565443 57999999999999 5666554 58999999999998 5676554 58999999
Q ss_pred ccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChh
Q 036985 164 DYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPE 243 (424)
Q Consensus 164 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 243 (424)
++|.+. .+|..+. .+|+.|++++|+++..+..+. ++|+.|++++|.++. +|..+..+|+.|++++|.++. +|.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~-LP~ 321 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTA-LPE 321 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCcccc-CCc
Confidence 999998 6677664 589999999999995443343 589999999999985 455556789999999999985 444
Q ss_pred hhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhc
Q 036985 244 SLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMA 323 (424)
Q Consensus 244 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 323 (424)
.+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++.++. ...+.|++|++++|+++. +|..+.
T Consensus 322 ~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~--------~lp~~L~~LdLs~N~Lt~-LP~~l~ 387 (754)
T PRK15370 322 TL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPE--------TLPPTITTLDVSRNALTN-LPENLP 387 (754)
T ss_pred cc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCCh--------hhcCCcCEEECCCCcCCC-CCHhHH
Confidence 43 3789999999999984 666553 799999999999987543 123689999999999995 455444
Q ss_pred CCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCc
Q 036985 324 LMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLF 371 (424)
Q Consensus 324 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~ 371 (424)
..|+.|++++|++. .+|..+..+.. ..+.+..|++.+|.++
T Consensus 388 --~sL~~LdLs~N~L~-~LP~sl~~~~~----~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 --AALQIMQASRNNLV-RLPESLPHFRG----EGPQPTRIIVEYNPFS 428 (754)
T ss_pred --HHHHHHhhccCCcc-cCchhHHHHhh----cCCCccEEEeeCCCcc
Confidence 37999999999998 67776665543 3455899999999987
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=9.9e-22 Score=185.56 Aligned_cols=284 Identities=21% Similarity=0.181 Sum_probs=136.2
Q ss_pred EEEeCCCCCcc-ccCCCcCCCCCCcEEEccCCCCCCC----cchhcCCCcCCceEEcccCcccc------cCCccccCCC
Q 036985 88 ELNLDQAGYSG-SLSTTSWNLPYLETLDLSNNFFSGS----IPESLSNLTRLIRLGLSRNSFSG------EIPASIGSLS 156 (424)
Q Consensus 88 ~L~L~~~~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~------~~p~~~~~l~ 156 (424)
.|+|.++.+++ .....+..++.|++|+++++.+++. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35566666653 2334445666677777777777432 34455566667777777766552 1233455566
Q ss_pred cCceEecccCcCCCCchhhcCCCCC---CcEEEeecccccccCCC-----CCCC-CCcCEEEccCCcCCCCCCCccccCC
Q 036985 157 SLEELYLDYNNLEGTIPASFNGLSS---LKRLEIQSNKLTGEFPE-----LGSL-KNLYFLDASDNAISGKLPAILPTSL 227 (424)
Q Consensus 157 ~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~l~~n~l~~~~~~-----l~~l-~~L~~L~l~~n~l~~~~~~~~~~~L 227 (424)
+|++|++++|.+.+..+..+..+.+ |++|++++|.+++.... +..+ ++|+.|++++|.+++....
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------ 155 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------ 155 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH------
Confidence 7777777777666444444433333 66666666655521110 2233 4444444444444321100
Q ss_pred cEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCC----cCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCC
Q 036985 228 VQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGS----VPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQ 303 (424)
Q Consensus 228 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 303 (424)
.+...+..+++|++|++++|.+++. ++..+...++|+.|++++|.+++..... .......+++
T Consensus 156 ------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~-l~~~~~~~~~ 222 (319)
T cd00116 156 ------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA-LAETLASLKS 222 (319)
T ss_pred ------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHH-HHHHhcccCC
Confidence 1223344455566666666665532 1222333445666666666554321100 0000023455
Q ss_pred CcEEEccCCCCCCCChhhhc-----CCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccc----c
Q 036985 304 LIAVDISNNELQGMLPLFMA-----LMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGA----I 374 (424)
Q Consensus 304 L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~----~ 374 (424)
|++|++++|.+++.....+. ..+.|+.|++++|.+++.....+..... .+++|+++++++|.++.. +
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~----~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA----EKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh----cCCCccEEECCCCCCcHHHHHHH
Confidence 66666666655532222111 1256666666666655222221211111 123366666666666533 2
Q ss_pred ChhhhhhccCCcEEEccCCC
Q 036985 375 PRSLLELQPGSANVRLADNC 394 (424)
Q Consensus 375 p~~~~~l~~~L~~L~l~~N~ 394 (424)
...+....+.|+++++.+|+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 299 AESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHhhcCCchhhcccCCCC
Confidence 22222221355666666554
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=5.7e-22 Score=179.17 Aligned_cols=128 Identities=29% Similarity=0.358 Sum_probs=111.7
Q ss_pred CCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEeccc-CcCCCCchhhcCCCCCCcEEEe
Q 036985 109 YLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDY-NNLEGTIPASFNGLSSLKRLEI 187 (424)
Q Consensus 109 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l 187 (424)
.-..++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+-|.+|.++++|.+|.+.+ |+|+......|.++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 467899999999977788999999999999999999999999999999998887776 9999877789999999999999
Q ss_pred ecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCc
Q 036985 188 QSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNN 236 (424)
Q Consensus 188 ~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~ 236 (424)
..|++.-.... +..++++..|.+.+|.+.......+. ..++.+.+..|.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 99999866665 89999999999999998755554555 677888877776
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=2.8e-20 Score=175.66 Aligned_cols=284 Identities=22% Similarity=0.235 Sum_probs=179.6
Q ss_pred EEEccCCCCC-CCcchhcCCCcCCceEEcccCccccc----CCccccCCCcCceEecccCcCCC------CchhhcCCCC
Q 036985 112 TLDLSNNFFS-GSIPESLSNLTRLIRLGLSRNSFSGE----IPASIGSLSSLEELYLDYNNLEG------TIPASFNGLS 180 (424)
Q Consensus 112 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~l~ 180 (424)
.|+|..+.++ ......+..++.|++|+++++.+++. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4667777766 23445556667788888888877432 34445566677777777776652 1233455566
Q ss_pred CCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCC----CChhhhcCC-CCCcEE
Q 036985 181 SLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQG----TVPESLKLL-SYLQVV 254 (424)
Q Consensus 181 ~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L 254 (424)
+|++|++++|.+.+..+. +..+.+ . ++|++|++++|++.+ .+...+..+ ++|++|
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~-----------------~--~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR-----------------S--SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc-----------------c--CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence 666666666665532221 211111 0 125555555555442 223445666 899999
Q ss_pred EeeCCcCCCC----cCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCC----hhhhcCCC
Q 036985 255 DLSHNKLSGS----VPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGML----PLFMALMP 326 (424)
Q Consensus 255 ~Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~l~~l~ 326 (424)
++++|.+++. ++..+..+++|++|++++|.+++....... ......++|++|++++|.+++.. ...+..++
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA-EGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH-HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 9999999843 334566778999999999999862211110 00033469999999999997543 34566789
Q ss_pred CCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCcc----ccChhhhhhccCCcEEEccCCCCCCCC---
Q 036985 327 KLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFG----AIPRSLLELQPGSANVRLADNCLYRCP--- 399 (424)
Q Consensus 327 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~----~~p~~~~~l~~~L~~L~l~~N~l~~ip--- 399 (424)
+|++|++++|.+++.....+..... ...+.|++|++++|.+++ .+...+... ++|+++++++|.+++-+
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~---~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALL---SPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHh---ccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHHHHH
Confidence 9999999999998754444443210 022459999999999973 334455556 58999999999998432
Q ss_pred -Ccccccc-CCCcccccccCcc
Q 036985 400 -FSFFFCQ-GARQKSLVECNRF 419 (424)
Q Consensus 400 -~~~~~~~-~~l~~l~l~~n~l 419 (424)
.....+. ..++.+++..|++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 298 LAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhhcCCchhhcccCCCCC
Confidence 1122333 4588888888764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=1.7e-19 Score=145.55 Aligned_cols=155 Identities=31% Similarity=0.502 Sum_probs=117.5
Q ss_pred CCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 82 ALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
++.+++.|.|++|.++ .+|+.++.+.+|+.|++.+|+|+ .+|..++.+++|+.|+++-|++. .+|..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4577888888888887 45666888888888888888887 67778888888888888888887 788888888888888
Q ss_pred ecccCcCCC-CchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCC
Q 036985 162 YLDYNNLEG-TIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGT 240 (424)
Q Consensus 162 ~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~ 240 (424)
|+.+|++.. ..|..|..+..|+.|++++|.+.-.+++++++++|+.|.+.+|.+- .
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-----------------------~ 164 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-----------------------S 164 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-----------------------h
Confidence 888887763 4677777788888888888888766666777777777777777654 3
Q ss_pred ChhhhcCCCCCcEEEeeCCcCC
Q 036985 241 VPESLKLLSYLQVVDLSHNKLS 262 (424)
Q Consensus 241 ~~~~l~~l~~L~~L~Ls~n~l~ 262 (424)
.|..++.++.|++|.+.+|+++
T Consensus 165 lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred CcHHHHHHHHHHHHhcccceee
Confidence 4455555555555555555555
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=2.5e-18 Score=138.89 Aligned_cols=165 Identities=30% Similarity=0.484 Sum_probs=114.4
Q ss_pred CCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEee
Q 036985 178 GLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLS 257 (424)
Q Consensus 178 ~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 257 (424)
++..++.|.+++|+++..+|.++.+.+|+.|++.+|+++ ..|..++.+++|+.|+++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-----------------------~lp~~issl~klr~lnvg 87 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-----------------------ELPTSISSLPKLRILNVG 87 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-----------------------hcChhhhhchhhhheecc
Confidence 344455555555555555555555555555555555444 456677777888888888
Q ss_pred CCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCc
Q 036985 258 HNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNK 337 (424)
Q Consensus 258 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~ 337 (424)
.|++. ..|..|+.+|.|+.||+.+|++.+-..|.-+ -.+..|+.|++++|.+. .+|..++++++|+.|.+..|.
T Consensus 88 mnrl~-~lprgfgs~p~levldltynnl~e~~lpgnf----f~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 88 MNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNF----FYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhhh-cCccccCCCchhhhhhccccccccccCCcch----hHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 88776 6777888888888888888877764444322 35677788888888887 667778888888888888887
Q ss_pred CcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhh
Q 036985 338 FTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLEL 381 (424)
Q Consensus 338 l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l 381 (424)
+. ..|.+++.+.. |++|++.+|+++ .+|..+.++
T Consensus 162 ll-~lpkeig~lt~--------lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTR--------LRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred hh-hCcHHHHHHHH--------HHHHhcccceee-ecChhhhhh
Confidence 76 57888888777 888888888886 566666544
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=1.9e-14 Score=146.52 Aligned_cols=162 Identities=35% Similarity=0.511 Sum_probs=130.1
Q ss_pred hccCCCHhHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeecCC-CCCCCceeEEEeCCCCCcccc
Q 036985 22 AESKTYWGDIQVMKELKNSLDPNSVSPGSCLSSWDFSVDPCDSLFSEKFTCGFRCDVS-VSALSRVTELNLDQAGYSGSL 100 (424)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~c~~~-~~~~~~l~~L~L~~~~l~~~~ 100 (424)
.+..+.+.|..||..+|++++. +. ..+|. .++|... ...|.|+.|... ......++.|+|+++.+.|.+
T Consensus 365 ~~~~t~~~~~~aL~~~k~~~~~----~~--~~~W~--g~~C~p~--~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i 434 (623)
T PLN03150 365 AESKTLLEEVSALQTLKSSLGL----PL--RFGWN--GDPCVPQ--QHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI 434 (623)
T ss_pred cccccCchHHHHHHHHHHhcCC----cc--cCCCC--CCCCCCc--ccccccceeeccCCCCceEEEEEECCCCCccccC
Confidence 3456778899999999998842 11 13685 3677410 012589999631 112235899999999999999
Q ss_pred CCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCC-
Q 036985 101 STTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGL- 179 (424)
Q Consensus 101 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l- 179 (424)
|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++++++|++|+|++|.+.+.+|..+...
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~ 514 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888653
Q ss_pred CCCcEEEeeccccc
Q 036985 180 SSLKRLEIQSNKLT 193 (424)
Q Consensus 180 ~~L~~L~l~~n~l~ 193 (424)
.++..+++.+|...
T Consensus 515 ~~~~~l~~~~N~~l 528 (623)
T PLN03150 515 LHRASFNFTDNAGL 528 (623)
T ss_pred ccCceEEecCCccc
Confidence 46677888877643
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=2.1e-14 Score=128.83 Aligned_cols=90 Identities=27% Similarity=0.324 Sum_probs=50.0
Q ss_pred CcCCCCCCcEEEccCCCCCCC----cchhcCCCcCCceEEcccCcccc----cCCcc-------ccCCCcCceEecccCc
Q 036985 103 TSWNLPYLETLDLSNNFFSGS----IPESLSNLTRLIRLGLSRNSFSG----EIPAS-------IGSLSSLEELYLDYNN 167 (424)
Q Consensus 103 ~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~----~~p~~-------~~~l~~L~~L~L~~n~ 167 (424)
....+..++.+++++|.+... +...+.+.+.|+..++++= ++| .+|+. +...++|++|+||+|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 345677788888888887633 3345566677777777642 222 23332 2334566666666665
Q ss_pred CCCCchhhc----CCCCCCcEEEeeccccc
Q 036985 168 LEGTIPASF----NGLSSLKRLEIQSNKLT 193 (424)
Q Consensus 168 l~~~~~~~l----~~l~~L~~L~l~~n~l~ 193 (424)
+....+..| ..+..|++|+|.+|.+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 554333332 33455555555555443
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.37 E-value=4.9e-14 Score=126.43 Aligned_cols=247 Identities=23% Similarity=0.321 Sum_probs=153.5
Q ss_pred CCCceeEEEeCCCCCccc----cCCCcCCCCCCcEEEccCCC---CCCCcc-------hhcCCCcCCceEEcccCccccc
Q 036985 82 ALSRVTELNLDQAGYSGS----LSTTSWNLPYLETLDLSNNF---FSGSIP-------ESLSNLTRLIRLGLSRNSFSGE 147 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~~~----~~~~~~~l~~L~~L~L~~n~---i~~~~~-------~~~~~l~~L~~L~L~~n~i~~~ 147 (424)
.+..++.++|++|.+... +...+.+.+.|+..++++-. ....+| .++..+++|++|+||.|.+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 357899999999998542 34556778899999998752 223344 3456788999999999999755
Q ss_pred CCccc----cCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCcc
Q 036985 148 IPASI----GSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAIL 223 (424)
Q Consensus 148 ~p~~~----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 223 (424)
-+..| ..+..|++|.|.+|.+.-.....++. .|.+|. .+. ....-++|+++...+|++.......+
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k------k~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK------KAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh------ccCCCcceEEEEeeccccccccHHHH
Confidence 55443 46789999999999886332222211 111111 000 02233445555555555443332222
Q ss_pred c------cCCcEEEcccCcCCC----CChhhhcCCCCCcEEEeeCCcCCCC----cCccccCCCCCCEEeccCCcCCCCC
Q 036985 224 P------TSLVQISMRNNNLQG----TVPESLKLLSYLQVVDLSHNKLSGS----VPSFVFSHPSLQQLTLSFNQFTSIQ 289 (424)
Q Consensus 224 ~------~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~ 289 (424)
. +.|+.+.+..|.+.. .....+..+++|+.|||.+|-++.. +...+..+++|+.|++++|.+..-.
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence 1 445555555555432 2335677888888888888887743 3345666788888888888887633
Q ss_pred CCCCCCCCcccCCCCcEEEccCCCCCCC----ChhhhcCCCCCCEEeccCCcC
Q 036985 290 QPAPTNDNNIFSSQLIAVDISNNELQGM----LPLFMALMPKLSALSLENNKF 338 (424)
Q Consensus 290 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l 338 (424)
...+........+.|+.|.+.+|.++.. +...+...|.|+.|+|++|.+
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2222222223467788888888887632 223445577888888888877
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.36 E-value=4.8e-14 Score=133.79 Aligned_cols=174 Identities=29% Similarity=0.391 Sum_probs=143.2
Q ss_pred CEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCC
Q 036985 206 YFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFN 283 (424)
Q Consensus 206 ~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n 283 (424)
...|++.|++. .+|..+. ..|+.+.+..|.+. .+|..+..+..|..||++.|++. ..|..++.++ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 44567777766 3333333 66777777778777 77888999999999999999998 7788887765 899999999
Q ss_pred cCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEE
Q 036985 284 QFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRL 363 (424)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L 363 (424)
+++.++.+. +..++|..||.+.|++. .+|..++.+.+|+.|++..|++. .+|++++.++ |..|
T Consensus 154 kl~~lp~~i------g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp---------Li~l 216 (722)
T KOG0532|consen 154 KLTSLPEEI------GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP---------LIRL 216 (722)
T ss_pred ccccCCccc------ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc---------eeee
Confidence 999865543 56788999999999998 56777899999999999999998 6788888543 8999
Q ss_pred EccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCcc
Q 036985 364 LLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSF 402 (424)
Q Consensus 364 ~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~ 402 (424)
|+|.|+++ .+|-+|.+++ .|++|-|.+|.+++=|..+
T Consensus 217 DfScNkis-~iPv~fr~m~-~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 217 DFSCNKIS-YLPVDFRKMR-HLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred ecccCcee-ecchhhhhhh-hheeeeeccCCCCCChHHH
Confidence 99999997 7999999996 9999999999999877654
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.34 E-value=2.2e-13 Score=119.84 Aligned_cols=203 Identities=23% Similarity=0.195 Sum_probs=132.1
Q ss_pred CCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc-cCCcEEEccc-CcCCCCChhhhcCCCCCcEE
Q 036985 177 NGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP-TSLVQISMRN-NNLQGTVPESLKLLSYLQVV 254 (424)
Q Consensus 177 ~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L 254 (424)
..+.+|+.+.++.+.-.....-...-|.|+++.+....+.. .+...+ ..+.....+. .-.+|.....+..+..|+++
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~-~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD-VPSLLPETILADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecccccc-cccccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence 34456666666655433111112233556666655444332 111111 1111111111 11223333344556778999
Q ss_pred EeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEecc
Q 036985 255 DLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLE 334 (424)
Q Consensus 255 ~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 334 (424)
||++|.|+ .+...+.-.|.++.|++++|.+..+... ..+++|+.|||++|.++ .+..+-..+.+.++|.|+
T Consensus 290 DLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nL-------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 290 DLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNL-------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred cccccchh-hhhhhhhhccceeEEeccccceeeehhh-------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 99999998 6667777789999999999999886543 56789999999999888 445666778899999999
Q ss_pred CCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccc-cChhhhhhccCCcEEEccCCCCCCCCC
Q 036985 335 NNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGA-IPRSLLELQPGSANVRLADNCLYRCPF 400 (424)
Q Consensus 335 ~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~-~p~~~~~l~~~L~~L~l~~N~l~~ip~ 400 (424)
+|.+.. -..+.++.+ |..||+++|+|... --.+++++ |-|+.+.+.+|++..+|+
T Consensus 361 ~N~iE~--LSGL~KLYS--------LvnLDl~~N~Ie~ldeV~~IG~L-PCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYS--------LVNLDLSSNQIEELDEVNHIGNL-PCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhHhh--hhhhHhhhh--------heeccccccchhhHHHhcccccc-cHHHHHhhcCCCccccch
Confidence 998863 245666666 99999999988532 23457778 799999999999988875
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=2.3e-12 Score=125.41 Aligned_cols=197 Identities=36% Similarity=0.471 Sum_probs=134.4
Q ss_pred EEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCC-cCceEecccCcCCCCchhhcCCCCCCcEEEeecc
Q 036985 112 TLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLS-SLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSN 190 (424)
Q Consensus 112 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 190 (424)
.+++..+.+.. ....+..++.++.|++.+|.++ .++.....+. +|++|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 57777777642 2334556677888888888888 5666666664 8888888888877 55567778888888888888
Q ss_pred cccccCCCCCCCCCcCEEEccCCcCCCCCCCc-cccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccc
Q 036985 191 KLTGEFPELGSLKNLYFLDASDNAISGKLPAI-LPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFV 269 (424)
Q Consensus 191 ~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 269 (424)
+++...+.....+.|+.|++++|.+....+.. ....|+++.+++|.+. ..+..+.++.++..+.+.+|++. ..+..+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~ 251 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESI 251 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchh
Confidence 88855554557778888888888877444332 3355777777777533 34455667777777777777776 335566
Q ss_pred cCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChh
Q 036985 270 FSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPL 320 (424)
Q Consensus 270 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 320 (424)
..++++++|++++|.++.++. . ....+++.|++++|.+....+.
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~---~----~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS---L----GSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccccceecccccccccccc---c----cccCccCEEeccCccccccchh
Confidence 667777777777777776544 2 4556777777777777655544
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=4.8e-12 Score=123.14 Aligned_cols=199 Identities=28% Similarity=0.371 Sum_probs=159.2
Q ss_pred ceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCC-CCcEEEeecccccccCCCCCCCCCcCEEEccCC
Q 036985 135 IRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLS-SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDN 213 (424)
Q Consensus 135 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n 213 (424)
..+++..+.+. .....+..++.++.|++.+|.+. .++.....++ +|+.|++++|.+......+..+++|+.|++++|
T Consensus 96 ~~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 96 PSLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred ceeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 46888888875 23345666789999999999998 6666777774 999999999999966556899999999999999
Q ss_pred cCCCCCCCc-cccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCC
Q 036985 214 AISGKLPAI-LPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPA 292 (424)
Q Consensus 214 ~l~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~ 292 (424)
++....+.. ..+.++.|++++|.+. .+|........|++|.+++|.+. ..+..+..+.++..+.+.+|++... +.
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~--~~ 249 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL--PE 249 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec--cc
Confidence 998666554 4489999999999998 55665566677999999999654 4566788889999999999998763 22
Q ss_pred CCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchh
Q 036985 293 PTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTE 345 (424)
Q Consensus 293 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 345 (424)
.. ..++++++|++++|.++.... ++.+.+++.|++++|.+....+..
T Consensus 250 ~~----~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 250 SI----GNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hh----ccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 22 566789999999999985544 888999999999999988665543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1.5e-13 Score=130.52 Aligned_cols=172 Identities=23% Similarity=0.301 Sum_probs=153.4
Q ss_pred CcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcE
Q 036985 227 LVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIA 306 (424)
Q Consensus 227 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~ 306 (424)
-...+++.|++. .+|..+..+..|+.+.+..|.+. .+|..+..+..|.+|+++.|+++.++.... .--|+.
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-------~lpLkv 147 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLC-------DLPLKV 147 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhh-------cCccee
Confidence 456788999998 78888999999999999999998 889999999999999999999998766543 245899
Q ss_pred EEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCc
Q 036985 307 VDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSA 386 (424)
Q Consensus 307 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~ 386 (424)
|-+++|+++ .+|..++..+.|..||.+.|.+. .+|..++.+.+ |+.|.+..|++. .+|+.+..+ .|.
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s--------lr~l~vrRn~l~-~lp~El~~L--pLi 214 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS--------LRDLNVRRNHLE-DLPEELCSL--PLI 214 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH--------HHHHHHhhhhhh-hCCHHHhCC--cee
Confidence 999999999 67788889999999999999997 68888998888 999999999997 688889877 599
Q ss_pred EEEccCCCCCCCCCccccccCCCcccccccCccCC
Q 036985 387 NVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTP 421 (424)
Q Consensus 387 ~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~ 421 (424)
.||++.|++..||.++-.... |+.|.|+||++..
T Consensus 215 ~lDfScNkis~iPv~fr~m~~-Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 215 RLDFSCNKISYLPVDFRKMRH-LQVLQLENNPLQS 248 (722)
T ss_pred eeecccCceeecchhhhhhhh-heeeeeccCCCCC
Confidence 999999999999999988877 9999999999875
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6.3e-13 Score=122.58 Aligned_cols=210 Identities=24% Similarity=0.216 Sum_probs=101.0
Q ss_pred CCcCCceEEcccCcccccCC--ccccCCCcCceEecccCcCCCC--chhhcCCCCCCcEEEeecccccccCCC--CCCCC
Q 036985 130 NLTRLIRLGLSRNSFSGEIP--ASIGSLSSLEELYLDYNNLEGT--IPASFNGLSSLKRLEIQSNKLTGEFPE--LGSLK 203 (424)
Q Consensus 130 ~l~~L~~L~L~~n~i~~~~p--~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~--l~~l~ 203 (424)
++.+|+.+.|.++.+. ..+ .....+++++.|||+.|-+... +......+++|+.|+++.|++...... -..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4455555555555444 222 1233455555555555544421 112234455555555555555422222 22445
Q ss_pred CcCEEEccCCcCCCCCCCccc---cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCc-CccccCCCCCCEEe
Q 036985 204 NLYFLDASDNAISGKLPAILP---TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSV-PSFVFSHPSLQQLT 279 (424)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~~~~L~~L~ 279 (424)
+|+.|.++.|.++..-..... ++++.|++.+|.....-......++.|++|||++|++-... -...+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 555566666555422111111 55666666665322222223344556666666666655321 12344566666666
Q ss_pred ccCCcCCCCCCCCCC-CCCcccCCCCcEEEccCCCCCCCC-hhhhcCCCCCCEEeccCCcCcc
Q 036985 280 LSFNQFTSIQQPAPT-NDNNIFSSQLIAVDISNNELQGML-PLFMALMPKLSALSLENNKFTG 340 (424)
Q Consensus 280 L~~n~l~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~ 340 (424)
++.+.+.++..+..- ......+++|++|+++.|++.+.. -..+..+++|+.|.+..|.++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 666666665444321 011134566666666666664211 1233445566666666666553
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.1e-12 Score=121.01 Aligned_cols=208 Identities=22% Similarity=0.215 Sum_probs=144.1
Q ss_pred cCCCcCceEecccCcCCCCch-hhcCCCCCCcEEEeecccccccCCC---CCCCCCcCEEEccCCcCCCCCCCccc---c
Q 036985 153 GSLSSLEELYLDYNNLEGTIP-ASFNGLSSLKRLEIQSNKLTGEFPE---LGSLKNLYFLDASDNAISGKLPAILP---T 225 (424)
Q Consensus 153 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~~~---~ 225 (424)
.++.+|+...|.++.+..... .....+++++.|+++.|-+....+. ...+++|+.|+++.|++......... .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467899999999988763221 3567899999999999988765443 67899999999999998644433322 7
Q ss_pred CCcEEEcccCcCCCC-ChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCC
Q 036985 226 SLVQISMRNNNLQGT-VPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQL 304 (424)
Q Consensus 226 ~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L 304 (424)
.++.|.++.|.++-. +...+..+|+|+.|++..|.....-.....-+..|+.|+|++|.+-+.+..... +.++.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~----~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKV----GTLPGL 273 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccc----ccccch
Confidence 888899988888742 223446788899999988853323333344467788889998888775544333 677888
Q ss_pred cEEEccCCCCCCC-Chhh-----hcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCc
Q 036985 305 IAVDISNNELQGM-LPLF-----MALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLF 371 (424)
Q Consensus 305 ~~L~Ls~n~l~~~-~~~~-----l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~ 371 (424)
+.|+++.+.+..+ .|+. ...+++|++|+++.|++.+ ++ .+..+.. .++|+.|.+..|.++
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~-sl~~l~~-----l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WR-SLNHLRT-----LENLKHLRITLNYLN 339 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-cc-ccchhhc-----cchhhhhhccccccc
Confidence 8888888887754 2222 3467888888888888853 22 1222111 233777777777775
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=1.1e-11 Score=104.42 Aligned_cols=84 Identities=25% Similarity=0.328 Sum_probs=27.1
Q ss_pred hcCCCCCcEEEeeCCcCCCCcCccc-cCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCC---hh
Q 036985 245 LKLLSYLQVVDLSHNKLSGSVPSFV-FSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGML---PL 320 (424)
Q Consensus 245 l~~l~~L~~L~Ls~n~l~~~~~~~l-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~---~~ 320 (424)
+..+++|++|++++|+++. +...+ ..+|+|+.|++++|+|.++...... ..+++|++|++.+|.++... ..
T Consensus 60 l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L----~~l~~L~~L~L~~NPv~~~~~YR~~ 134 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPL----SSLPKLRVLSLEGNPVCEKKNYRLF 134 (175)
T ss_dssp ----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGG----GG-TT--EEE-TT-GGGGSTTHHHH
T ss_pred ccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHH----HcCCCcceeeccCCcccchhhHHHH
Confidence 4455666666666666653 32222 2456666666666666554332222 34555555555555554221 11
Q ss_pred hhcCCCCCCEEec
Q 036985 321 FMALMPKLSALSL 333 (424)
Q Consensus 321 ~l~~l~~L~~L~L 333 (424)
.+..+|+|+.||-
T Consensus 135 vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 135 VIYKLPSLKVLDG 147 (175)
T ss_dssp HHHH-TT-SEETT
T ss_pred HHHHcChhheeCC
Confidence 3344555555543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=3.6e-12 Score=112.35 Aligned_cols=130 Identities=24% Similarity=0.319 Sum_probs=80.0
Q ss_pred CCCcCEEEccCCcCCCCCCC-ccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEec
Q 036985 202 LKNLYFLDASDNAISGKLPA-ILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTL 280 (424)
Q Consensus 202 l~~L~~L~l~~n~l~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L 280 (424)
...|+.+|+++|.|+..-.. .+.+.++.|++++|.+... ..+..+++|+.|||++|.++ .+..+-..+-++++|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 34455555555555422111 1115566666666666532 33667777778888887776 34444455667778888
Q ss_pred cCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCC-hhhhcCCCCCCEEeccCCcCccc
Q 036985 281 SFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGML-PLFMALMPKLSALSLENNKFTGM 341 (424)
Q Consensus 281 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~ 341 (424)
++|.+.++... ..+-+|+.||+++|+|.... ...++++|-|+.+.|.+|.+.+.
T Consensus 360 a~N~iE~LSGL-------~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIETLSGL-------RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhhhhh-------HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88877665332 45667778888888776432 23567778888888888877754
No 35
>PLN03150 hypothetical protein; Provisional
Probab=99.14 E-value=1.1e-10 Score=119.32 Aligned_cols=107 Identities=24% Similarity=0.267 Sum_probs=81.4
Q ss_pred CcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhcc
Q 036985 304 LIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQP 383 (424)
Q Consensus 304 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~ 383 (424)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..++.+.. |+.|+|++|++++.+|+.+.++ +
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~--------L~~LdLs~N~lsg~iP~~l~~L-~ 490 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS--------LEVLDLSYNSFNGSIPESLGQL-T 490 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCC--------CCEEECCCCCCCCCCchHHhcC-C
Confidence 677888888888888888888888888888888888888877776666 8888888888888888888888 4
Q ss_pred CCcEEEccCCCCC-CCCCccccccCCCcccccccCcc
Q 036985 384 GSANVRLADNCLY-RCPFSFFFCQGARQKSLVECNRF 419 (424)
Q Consensus 384 ~L~~L~l~~N~l~-~ip~~~~~~~~~l~~l~l~~n~l 419 (424)
+|++|++++|.++ .+|..+.....++..+++.+|..
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 8888888888876 77777665444455666666654
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=1e-10 Score=98.57 Aligned_cols=125 Identities=23% Similarity=0.244 Sum_probs=37.0
Q ss_pred cCCCCCcEEEeeCCcCCCCcCcccc-CCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcC
Q 036985 246 KLLSYLQVVDLSHNKLSGSVPSFVF-SHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMAL 324 (424)
Q Consensus 246 ~~l~~L~~L~Ls~n~l~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 324 (424)
.+..++++|+|.+|.|+. + +.++ .+.+|+.|++++|.++.++.- ..++.|++|++++|.++...+.....
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~l-------~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEGL-------PGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--TT-----------TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccCc-------cChhhhhhcccCCCCCCccccchHHh
Confidence 344556777777777763 2 2343 356677777777777765432 34567777777777776443322235
Q ss_pred CCCCCEEeccCCcCcccC-chhHHhhcCCCCCCCCCccEEEccCCcCccccCh----hhhhhccCCcEEE
Q 036985 325 MPKLSALSLENNKFTGMI-PTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPR----SLLELQPGSANVR 389 (424)
Q Consensus 325 l~~L~~L~L~~N~l~~~~-~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~----~~~~l~~~L~~L~ 389 (424)
+++|+.|++++|+|...- -..+..++. |+.|+|.+|.++.. +. .+..+ |+|+.||
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~--------L~~L~L~~NPv~~~-~~YR~~vi~~l-P~Lk~LD 146 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPK--------LRVLSLEGNPVCEK-KNYRLFVIYKL-PSLKVLD 146 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT----------EEE-TT-GGGGS-TTHHHHHHHH--TT-SEET
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCC--------cceeeccCCcccch-hhHHHHHHHHc-ChhheeC
Confidence 677777777777775421 123333333 77777777776533 22 13344 6666664
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=3.7e-11 Score=125.42 Aligned_cols=107 Identities=28% Similarity=0.376 Sum_probs=61.7
Q ss_pred CceeEEEeCCCC--CccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 84 SRVTELNLDQAG--YSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 84 ~~l~~L~L~~~~--l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
+.++.|-+.++. +......+|..++.|++|||++|.--+.+|..++++-+||+|+++++.+. .+|..++++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 345555555554 33233334555666666666665544456666666666666666666666 566666666666666
Q ss_pred ecccCcCCCCchhhcCCCCCCcEEEeeccc
Q 036985 162 YLDYNNLEGTIPASFNGLSSLKRLEIQSNK 191 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 191 (424)
++..+.....+|.....+++|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 666655444444445556666666665544
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.09 E-value=7.9e-12 Score=121.97 Aligned_cols=242 Identities=28% Similarity=0.280 Sum_probs=107.9
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
..+..+.++.+.+.. .-..+..++.|+.|++.+|.|.. +...+..+++|++|++++|.|+.. ..+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 334444444444432 12224445555555555555552 222244555555555555555533 22444455555555
Q ss_pred ccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCCh
Q 036985 164 DYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVP 242 (424)
Q Consensus 164 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~ 242 (424)
++|.+... ..+..++.|+.+++++|.+...... ...+.+++.+++.+|.+...........+..+++..|.++..-
T Consensus 148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~- 224 (414)
T KOG0531|consen 148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE- 224 (414)
T ss_pred ccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc-
Confidence 55555422 2344455555555555555533221 2444555555555555443222222233333344444443221
Q ss_pred hhhcCCC--CCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCC---
Q 036985 243 ESLKLLS--YLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGM--- 317 (424)
Q Consensus 243 ~~l~~l~--~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--- 317 (424)
.+.... +|+.+++++|++. ..+..+..+..+..|++..|++...... .....+..+....+.+...
T Consensus 225 -~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 225 -GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGL-------ERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred -CcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccccc-------cccchHHHhccCcchhcchhhh
Confidence 111112 2555555555554 2223344455555555555555543322 2223444444444444311
Q ss_pred Chh-hhcCCCCCCEEeccCCcCccc
Q 036985 318 LPL-FMALMPKLSALSLENNKFTGM 341 (424)
Q Consensus 318 ~~~-~l~~l~~L~~L~L~~N~l~~~ 341 (424)
... .....+.++.+.+..|.+...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred hccccccccccccccccccCccccc
Confidence 011 133445555555555555443
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.08 E-value=9.3e-12 Score=121.48 Aligned_cols=128 Identities=30% Similarity=0.386 Sum_probs=75.2
Q ss_pred CCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEE
Q 036985 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRL 185 (424)
Q Consensus 106 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 185 (424)
.+..++.+.+..|.+.. +-..+..+++|+.|++.+|.|.. +...+..+++|++|++++|.|+.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 45556666666666652 33346666777777777777763 332256667777777777777643 345556667777
Q ss_pred EeecccccccCCCCCCCCCcCEEEccCCcCCCCCCC--ccccCCcEEEcccCcCC
Q 036985 186 EIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPA--ILPTSLVQISMRNNNLQ 238 (424)
Q Consensus 186 ~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~L~~L~l~~n~l~ 238 (424)
++.+|.++ .+..+..++.|+.+++++|.+...... .-..+++.+++.+|.+.
T Consensus 146 ~l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 146 NLSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred eeccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 77777766 333455566666666766666544331 22244555555555443
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=2.2e-10 Score=119.74 Aligned_cols=128 Identities=27% Similarity=0.300 Sum_probs=101.2
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCC--CCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNF--FSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
..++.+.+.++.+.. ++.. ...+.|++|-+..|. +.......|..++.|++|||++|.--+.+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 456667766666542 2222 245579999999986 554455568889999999999987667899999999999999
Q ss_pred ecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCc
Q 036985 162 YLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNA 214 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~ 214 (424)
++++..+. .+|..+.++++|.+|++..+.-...++. ...+++|++|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999998 8899999999999999998876655666 5569999999987654
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=9.2e-10 Score=76.29 Aligned_cols=57 Identities=42% Similarity=0.540 Sum_probs=23.5
Q ss_pred CcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccC
Q 036985 110 LETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYN 166 (424)
Q Consensus 110 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 166 (424)
|++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444222233444444444444444444333334444444444444444
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.4e-09 Score=75.41 Aligned_cols=61 Identities=36% Similarity=0.531 Sum_probs=49.0
Q ss_pred cCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccc
Q 036985 132 TRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKL 192 (424)
Q Consensus 132 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 192 (424)
|+|++|++++|+++...+..|.++++|++|++++|.+....+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888866666788888888888888888877777888888888888888764
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=8.7e-10 Score=97.36 Aligned_cols=200 Identities=23% Similarity=0.182 Sum_probs=100.7
Q ss_pred CcCCceEEcccCcccc--cCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC--CCCCCCcC
Q 036985 131 LTRLIRLGLSRNSFSG--EIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE--LGSLKNLY 206 (424)
Q Consensus 131 l~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--l~~l~~L~ 206 (424)
++.++.+||.+|.|+. .+..-+.++|.|++|+++.|++...+...-....+|+.|.+.+..+.-.... +..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3444555555554441 1122233455555555555554422211112334555555555544322111 44555555
Q ss_pred EEEccCCcCCCC-----CCCccccCCcEEEcccCcCCC--CChhhhcCCCCCcEEEeeCCcCCCCc-CccccCCCCCCEE
Q 036985 207 FLDASDNAISGK-----LPAILPTSLVQISMRNNNLQG--TVPESLKLLSYLQVVDLSHNKLSGSV-PSFVFSHPSLQQL 278 (424)
Q Consensus 207 ~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~~~~L~~L 278 (424)
.|+++.|.+.-. ....+.+.++++..-.|.... .....-..++++..+.+..|.+...- ......+|.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 555555532211 111122445555544443210 01111234677777888888765332 2334456777788
Q ss_pred eccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChh------hhcCCCCCCEEecc
Q 036985 279 TLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPL------FMALMPKLSALSLE 334 (424)
Q Consensus 279 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~L~ 334 (424)
+|+.|+|.++...... ..+++|+.|.++++.+.+.... .++.+++++.|+=+
T Consensus 230 nL~~~~idswasvD~L----n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 230 NLGANNIDSWASVDAL----NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhcccccccHHHHHHH----cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 8888888776544444 5678888888888877644322 24566777776544
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.66 E-value=1e-09 Score=95.67 Aligned_cols=268 Identities=18% Similarity=0.170 Sum_probs=126.3
Q ss_pred CCCCCcEEEccCCCCCCCcc----hhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCC
Q 036985 106 NLPYLETLDLSNNFFSGSIP----ESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSS 181 (424)
Q Consensus 106 ~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 181 (424)
-+..+..++||+|.|..... ..+++-.+|+..+++.- ++|...+.+. .+| . ...+.+.+++.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~--~~L----------~-~Ll~aLlkcp~ 93 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELY--SNL----------V-MLLKALLKCPR 93 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHH--HHH----------H-HHHHHHhcCCc
Confidence 46667777777777764433 33444555666665542 1211111100 000 0 11123445555
Q ss_pred CcEEEeecccccccCCC-----CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEe
Q 036985 182 LKRLEIQSNKLTGEFPE-----LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDL 256 (424)
Q Consensus 182 L~~L~l~~n~l~~~~~~-----l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 256 (424)
|+..++++|.+....+. ++.-+.|++|.+++|.+.......++..|.+| .+| .-...-|.|+..+.
T Consensus 94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--a~n-------KKaa~kp~Le~vic 164 (388)
T COG5238 94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--AYN-------KKAADKPKLEVVIC 164 (388)
T ss_pred ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--HHH-------hhhccCCCceEEEe
Confidence 55555555555544433 44555666666666655422221111111111 111 11233456666666
Q ss_pred eCCcCCCCcC----ccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCC----ChhhhcCCCCC
Q 036985 257 SHNKLSGSVP----SFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGM----LPLFMALMPKL 328 (424)
Q Consensus 257 s~n~l~~~~~----~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L 328 (424)
..|++..-.. ..+.....|+.+.+.+|.|...............+.+|+.||+..|-++-. +...+..++.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 6666652111 112233466666777766654222111111113456777777777766532 22344556667
Q ss_pred CEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccC------hhhhhhccCCcEEEccCCCCCCC
Q 036985 329 SALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIP------RSLLELQPGSANVRLADNCLYRC 398 (424)
Q Consensus 329 ~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p------~~~~~l~~~L~~L~l~~N~l~~i 398 (424)
+.|.+..|-++.....++..-. .....++|..|...+|.+.+.+- .....-.|-|..+.+.+|.|...
T Consensus 245 rEL~lnDClls~~G~~~v~~~f--~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRF--NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hhccccchhhccccHHHHHHHh--hhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 7777777766654443332211 11234557777777775543221 11111115566666677766543
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.8e-10 Score=98.48 Aligned_cols=152 Identities=22% Similarity=0.213 Sum_probs=87.2
Q ss_pred CCceEEcccCcccc-cCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeeccc-ccccCCC--CCCCCCcCEE
Q 036985 133 RLIRLGLSRNSFSG-EIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNK-LTGEFPE--LGSLKNLYFL 208 (424)
Q Consensus 133 ~L~~L~L~~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~--l~~l~~L~~L 208 (424)
.|+++||++..|+. .+-..+..+.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+. ++..... +.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47777777766652 122234566777777777777777666677777777777777653 3321111 5667777777
Q ss_pred EccCCcCCCCCCCc----cccCCcEEEcccCcC---CCCChhhhcCCCCCcEEEeeCCcC-CCCcCccccCCCCCCEEec
Q 036985 209 DASDNAISGKLPAI----LPTSLVQISMRNNNL---QGTVPESLKLLSYLQVVDLSHNKL-SGSVPSFVFSHPSLQQLTL 280 (424)
Q Consensus 209 ~l~~n~l~~~~~~~----~~~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~l~~~~~L~~L~L 280 (424)
+++.+.+....... +.++|+.|+++++.- ...+..-...+++|.+|||++|.. +......+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77776654333211 125666777766431 112222235667777777776542 2222334555666666666
Q ss_pred cCCc
Q 036985 281 SFNQ 284 (424)
Q Consensus 281 ~~n~ 284 (424)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 6664
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.59 E-value=9.2e-10 Score=107.88 Aligned_cols=128 Identities=27% Similarity=0.314 Sum_probs=78.7
Q ss_pred cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCC
Q 036985 225 TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQL 304 (424)
Q Consensus 225 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L 304 (424)
..|.+.+.++|.+. .+..++.-++.++.|+|++|+++.. +.+..++.|+.|||++|.+..++.... .. ..|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~-----~g-c~L 234 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSM-----VG-CKL 234 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccch-----hh-hhh
Confidence 45666666777666 4455666677777777777777643 356677777777777777776543322 12 237
Q ss_pred cEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCc-hhHHhhcCCCCCCCCCccEEEccCCcCc
Q 036985 305 IAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIP-TEYAIRVAVPGPGIAPFQRLLLGGNYLF 371 (424)
Q Consensus 305 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~l~~~~~~~L~~L~Ls~N~l~ 371 (424)
+.|.+++|.++.. ..+.++.+|+.||+++|-+.+.-- .-+..+.. |+.|.|.+|.+.
T Consensus 235 ~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~--------L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSS--------LIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHH--------HHHHhhcCCccc
Confidence 7777777777633 235667777777777776654211 12233333 667777777664
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.53 E-value=6.3e-10 Score=109.02 Aligned_cols=195 Identities=25% Similarity=0.245 Sum_probs=109.8
Q ss_pred CceeEEEeCCCCCcccc-CCCcCCCCCCcEEEccCCCCCCCcchhcCCC-cCCceEEcccCccc---ccCCc---ccc--
Q 036985 84 SRVTELNLDQAGYSGSL-STTSWNLPYLETLDLSNNFFSGSIPESLSNL-TRLIRLGLSRNSFS---GEIPA---SIG-- 153 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~i~---~~~p~---~~~-- 153 (424)
.+.+.+.+-...-.+.. |..+..+..|++|.+.++.+.. ...+..+ ..|++|..++ .+. ..+.. .+.
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccc
Confidence 34455544433222222 5567788899999999988762 1122221 1344443322 111 00000 111
Q ss_pred -CCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc-cCCcEEE
Q 036985 154 -SLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP-TSLVQIS 231 (424)
Q Consensus 154 -~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~ 231 (424)
..-.|.+.+.++|.+. ....++.-++.|+.|+|++|+++... .+..+++|++||+++|.+.....-... ..|..|.
T Consensus 161 ~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeee
Confidence 1235666677777766 44556666677777777777777432 567777777777777777633221111 4577777
Q ss_pred cccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCc-CccccCCCCCCEEeccCCcC
Q 036985 232 MRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSV-PSFVFSHPSLQQLTLSFNQF 285 (424)
Q Consensus 232 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~~~~L~~L~L~~n~l 285 (424)
+++|.++.. ..+.++.+|+.||+++|-+.+.- -..+..+..|+.|+|.+|.+
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 777776632 35567777777777777665431 12244456677777777765
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.47 E-value=1.4e-08 Score=79.73 Aligned_cols=87 Identities=25% Similarity=0.289 Sum_probs=40.2
Q ss_pred CcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhcc
Q 036985 304 LIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQP 383 (424)
Q Consensus 304 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~ 383 (424)
|+..+|++|.+....+..-..++.++.|++++|.|+ .+|.+++.++. |+.|++++|.+. ..|+.+..+.
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~a--------Lr~lNl~~N~l~-~~p~vi~~L~- 123 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPA--------LRSLNLRFNPLN-AEPRVIAPLI- 123 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHH--------hhhcccccCccc-cchHHHHHHH-
Confidence 334444444444333333333344455555555554 34444444444 555555555553 3444444443
Q ss_pred CCcEEEccCCCCCCCCCc
Q 036985 384 GSANVRLADNCLYRCPFS 401 (424)
Q Consensus 384 ~L~~L~l~~N~l~~ip~~ 401 (424)
++-+|+..+|.+..||..
T Consensus 124 ~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 124 KLDMLDSPENARAEIDVD 141 (177)
T ss_pred hHHHhcCCCCccccCcHH
Confidence 455555555555555444
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=4.8e-09 Score=92.77 Aligned_cols=179 Identities=18% Similarity=0.120 Sum_probs=76.8
Q ss_pred CCcEEEeecccccccCCC--CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCc-CCCCC-hhhhcCCCCCcEE
Q 036985 181 SLKRLEIQSNKLTGEFPE--LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNN-LQGTV-PESLKLLSYLQVV 254 (424)
Q Consensus 181 ~L~~L~l~~n~l~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~L 254 (424)
.|++||++...++..... +..+.+|+.|.+.++++.+.+...+. ..|+.|+++.+. ++... .-.+..++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355566655555422111 44555555555555555554444443 455555555532 32211 1123455555555
Q ss_pred EeeCCcCCCCcCcccc--CCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCC-CCCCCChhhhcCCCCCCEE
Q 036985 255 DLSHNKLSGSVPSFVF--SHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNN-ELQGMLPLFMALMPKLSAL 331 (424)
Q Consensus 255 ~Ls~n~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L 331 (424)
+++++.+........- --++|+.|+++++.-.- ... .+......+++|.+|||++| .++......|..++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-~~s-h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-QKS-HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-hhh-HHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 5555554422111110 01445555555542110 000 00000134555555555555 2333333344555555555
Q ss_pred eccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCC
Q 036985 332 SLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGN 368 (424)
Q Consensus 332 ~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N 368 (424)
.+++|. +.+|+.+-.+.. .++|.+|++.++
T Consensus 344 SlsRCY--~i~p~~~~~l~s-----~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCY--DIIPETLLELNS-----KPSLVYLDVFGC 373 (419)
T ss_pred ehhhhc--CCChHHeeeecc-----CcceEEEEeccc
Confidence 555554 234443333222 344555555443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.35 E-value=1.4e-07 Score=82.54 Aligned_cols=246 Identities=17% Similarity=0.067 Sum_probs=146.2
Q ss_pred ccCCCcCceEecccCcCCCCchhh----cCCCCCCcEEEeeccccc---c--------cCCCCCCCCCcCEEEccCCcCC
Q 036985 152 IGSLSSLEELYLDYNNLEGTIPAS----FNGLSSLKRLEIQSNKLT---G--------EFPELGSLKNLYFLDASDNAIS 216 (424)
Q Consensus 152 ~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~---~--------~~~~l~~l~~L~~L~l~~n~l~ 216 (424)
+..+..+..++||+|.+....... +.+-.+|+..+++.--.. . ..+.+..+|+|+..++++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 334677888888888877543333 344566766666553211 0 1122456677777777777665
Q ss_pred CCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCc-------------cccCCCCCCEEeccCC
Q 036985 217 GKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPS-------------FVFSHPSLQQLTLSFN 283 (424)
Q Consensus 217 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-------------~l~~~~~L~~L~L~~n 283 (424)
...+.. .-+.+++-+.|++|.+++|.+....-. -...-|.|+......|
T Consensus 106 ~~~~e~------------------L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 106 SEFPEE------------------LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred cccchH------------------HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 433322 123445566777777777766422111 1223488999999999
Q ss_pred cCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCCh-----hhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCC
Q 036985 284 QFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLP-----LFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIA 358 (424)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~ 358 (424)
++..-+.. ..+.....-..|+++.+..|.|..... ..+..+.+|+.|||..|.++......++.... .++
T Consensus 168 Rlengs~~-~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~----~W~ 242 (388)
T COG5238 168 RLENGSKE-LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC----EWN 242 (388)
T ss_pred hhccCcHH-HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc----ccc
Confidence 98763221 111111222578999999998873311 23446789999999999998665555554332 355
Q ss_pred CccEEEccCCcCccccChhhhh-----hccCCcEEEccCCCCC--C-----CCCccccccCCCcccccccCccC
Q 036985 359 PFQRLLLGGNYLFGAIPRSLLE-----LQPGSANVRLADNCLY--R-----CPFSFFFCQGARQKSLVECNRFT 420 (424)
Q Consensus 359 ~L~~L~Ls~N~l~~~~p~~~~~-----l~~~L~~L~l~~N~l~--~-----ip~~~~~~~~~l~~l~l~~n~l~ 420 (424)
.|+.|.+..|.++..-...+.. ..|+|..|...+|-.. . +|.-.......|..+.+.+|+|.
T Consensus 243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 5899999999887554444322 1278999999998653 2 22222222233555666677764
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.18 E-value=2.7e-06 Score=71.54 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=70.2
Q ss_pred cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCC
Q 036985 225 TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQL 304 (424)
Q Consensus 225 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L 304 (424)
.....+|+++|.+... ..|..++.|.+|.+.+|+|+.+.|..-.-+++|+.|.+.+|.|..+...... ..++.|
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL----a~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL----ASCPKL 115 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh----ccCCcc
Confidence 4455666777666422 4566777788888888888866665555567788888888877765544444 567788
Q ss_pred cEEEccCCCCCCCC---hhhhcCCCCCCEEeccC
Q 036985 305 IAVDISNNELQGML---PLFMALMPKLSALSLEN 335 (424)
Q Consensus 305 ~~L~Ls~n~l~~~~---~~~l~~l~~L~~L~L~~ 335 (424)
++|.+-+|.++..- -..+..+|+|+.||+.+
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 88888888776321 12456677888888764
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=6.2e-07 Score=79.65 Aligned_cols=206 Identities=17% Similarity=0.158 Sum_probs=121.7
Q ss_pred CCceEEcccCcccccCC-cccc-CCCcCceEecccCcCCC--CchhhcCCCCCCcEEEeecccccccCCCC-CCCCCcCE
Q 036985 133 RLIRLGLSRNSFSGEIP-ASIG-SLSSLEELYLDYNNLEG--TIPASFNGLSSLKRLEIQSNKLTGEFPEL-GSLKNLYF 207 (424)
Q Consensus 133 ~L~~L~L~~n~i~~~~p-~~~~-~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~l-~~l~~L~~ 207 (424)
-++.|.+.++.|...-. ..|+ ..+.++++||.+|.++. .+...+.+++.|+.|+++.|++...+..+ ....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 34455555555442111 1122 45678889999998873 34445678899999999999888666554 46678888
Q ss_pred EEccCCcCCCCCCCccc---cCCcEEEcccCcCCCC--ChhhhcCC-CCCcEEEeeCCcCCCC--cCccccCCCCCCEEe
Q 036985 208 LDASDNAISGKLPAILP---TSLVQISMRNNNLQGT--VPESLKLL-SYLQVVDLSHNKLSGS--VPSFVFSHPSLQQLT 279 (424)
Q Consensus 208 L~l~~n~l~~~~~~~~~---~~L~~L~l~~n~l~~~--~~~~l~~l-~~L~~L~Ls~n~l~~~--~~~~l~~~~~L~~L~ 279 (424)
|-+.+..+.-.....+. +.+++|.++.|.+... ........ +.+++|....|..... ....-.-+|++..+-
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 88888776544433333 5566666666633211 00011111 2334444433322100 001112347777888
Q ss_pred ccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCC-hhhhcCCCCCCEEeccCCcCcccC
Q 036985 280 LSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGML-PLFMALMPKLSALSLENNKFTGMI 342 (424)
Q Consensus 280 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~ 342 (424)
+..|.+.++...... ..++.+.-|+|+.|+|.... -+.+.+++.|+.|.+++|.+.+..
T Consensus 206 v~e~PlK~~s~ek~s----e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGS----EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred eecCcccchhhcccC----CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 888877765433322 45677778888888887432 246788899999999998887544
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=2.1e-06 Score=54.61 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=29.0
Q ss_pred CccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCC
Q 036985 359 PFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPF 400 (424)
Q Consensus 359 ~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~ 400 (424)
+|++|++++|+|+ .+|..+.++ ++|++|++++|+|+++|.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l-~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNL-PNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTC-TTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCc-ccCchHhCC-CCCCEEEecCCCCCCCcC
Confidence 4788888888887 466667888 588888888888887653
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=2.4e-07 Score=72.94 Aligned_cols=85 Identities=25% Similarity=0.392 Sum_probs=43.4
Q ss_pred CCCCCcEEEccCCCCCCCcchhc-CCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcE
Q 036985 106 NLPYLETLDLSNNFFSGSIPESL-SNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKR 184 (424)
Q Consensus 106 ~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 184 (424)
....|+..+|++|.+.. +|..| ...+.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++.+
T Consensus 51 ~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 33444555555555552 23222 23345555555555555 44555555555555555555554 44444444555555
Q ss_pred EEeeccccc
Q 036985 185 LEIQSNKLT 193 (424)
Q Consensus 185 L~l~~n~l~ 193 (424)
|+..+|.+.
T Consensus 128 Lds~~na~~ 136 (177)
T KOG4579|consen 128 LDSPENARA 136 (177)
T ss_pred hcCCCCccc
Confidence 555555544
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=8.2e-06 Score=51.85 Aligned_cols=38 Identities=34% Similarity=0.551 Sum_probs=22.2
Q ss_pred CCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCC
Q 036985 250 YLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSI 288 (424)
Q Consensus 250 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 288 (424)
+|++|++++|+++ .+|..+..+++|++|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 5666666666666 3444566666666666666666653
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.97 E-value=1.6e-05 Score=66.98 Aligned_cols=59 Identities=27% Similarity=0.390 Sum_probs=26.2
Q ss_pred CCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCC
Q 036985 109 YLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLE 169 (424)
Q Consensus 109 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~ 169 (424)
....+||++|.+. .. ..|..+++|.+|.+++|.|+.+.|.--..+++|+.|.|.+|.+.
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 3444555555543 11 13444455555555555555333332223444445555444443
No 57
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.95 E-value=1.6e-05 Score=50.33 Aligned_cols=40 Identities=43% Similarity=0.736 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCcccceeec
Q 036985 28 WGDIQVMKELKNSLDPNSVSPGSCLSSWDFS--VDPCDSLFSEKFTCGFRCD 77 (424)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~--~~~C~~~~~~~~~~~~~c~ 77 (424)
+.|++||++||.++. .++...+.+|..+ .++|.| .||+|+
T Consensus 2 ~~d~~aLl~~k~~l~---~~~~~~l~~W~~~~~~~~C~W-------~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLN---NDPSGVLSSWNPSSDSDPCSW-------SGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT----SC-CCCTT--TT--S-CCCS-------TTEEE-
T ss_pred cHHHHHHHHHHHhcc---cccCcccccCCCcCCCCCeee-------ccEEeC
Confidence 689999999999994 3456778999886 799998 799995
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=4.1e-05 Score=72.78 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=37.9
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccC-cccccCCccccCCCcCceEe
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRN-SFSGEIPASIGSLSSLEELY 162 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~p~~~~~l~~L~~L~ 162 (424)
.+++.|++++|.++. +|. + -++|++|.++++.--..+|..+. ++|++|++++| .+. .+|. +|++|+
T Consensus 52 ~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEE
Confidence 556777777776653 231 1 12477777766433224454332 46777777766 333 3342 355566
Q ss_pred cccCc
Q 036985 163 LDYNN 167 (424)
Q Consensus 163 L~~n~ 167 (424)
++.+.
T Consensus 119 L~~n~ 123 (426)
T PRK15386 119 IKGSA 123 (426)
T ss_pred eCCCC
Confidence 65444
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=8e-05 Score=70.85 Aligned_cols=136 Identities=20% Similarity=0.264 Sum_probs=83.6
Q ss_pred cCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccC-cCCCCchhhcCCCCCC
Q 036985 104 SWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYN-NLEGTIPASFNGLSSL 182 (424)
Q Consensus 104 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L 182 (424)
+..+++++.|++++|.++ .+|. + -++|++|.++++.--..+|..+. ++|++|++++| .+. .+| .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence 445688999999999887 5552 2 23699999988643336676553 58999999988 443 444 357
Q ss_pred cEEEeecccccccCCCCCCC-CCcCEEEccCCc-C-CCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCC
Q 036985 183 KRLEIQSNKLTGEFPELGSL-KNLYFLDASDNA-I-SGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHN 259 (424)
Q Consensus 183 ~~L~l~~n~l~~~~~~l~~l-~~L~~L~l~~n~-l-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 259 (424)
+.|++..+.... +..+ ++|+.|.+.++. . ....+..++.+|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 115 e~L~L~~n~~~~----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 115 RSLEIKGSATDS----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ceEEeCCCCCcc----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 777776654431 2222 256667664432 1 11223345577888888777654 2333332 56777777665
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=1.2e-05 Score=82.48 Aligned_cols=134 Identities=17% Similarity=0.195 Sum_probs=84.1
Q ss_pred CCCCCcEEEeeCCcCCCC-cCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCC-CChhhhcC
Q 036985 247 LLSYLQVVDLSHNKLSGS-VPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQG-MLPLFMAL 324 (424)
Q Consensus 247 ~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~ 324 (424)
.+|+|+.|.+++=.+... ......++|+|..||+++..++.+.. + +.+++|+.|.+.+=.+.. ..-..+.+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G---I----S~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG---I----SRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH---H----hccccHHHHhccCCCCCchhhHHHHhc
Confidence 467777777777555422 12334466777777777777776422 2 566777777777666653 22234667
Q ss_pred CCCCCEEeccCCcCccc--CchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEcc
Q 036985 325 MPKLSALSLENNKFTGM--IPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLA 391 (424)
Q Consensus 325 l~~L~~L~L~~N~l~~~--~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~ 391 (424)
+++|+.||+|....... +...+-.+.. .+|.|+.||.|++.+.+.+-+.+.+-.|+|+.+..-
T Consensus 219 L~~L~vLDIS~~~~~~~~~ii~qYlec~~----~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNNDDTKIIEQYLECGM----VLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred ccCCCeeeccccccccchHHHHHHHHhcc----cCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 88888888888755432 2333333333 567788888888888777766666555677666543
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=2.6e-05 Score=80.15 Aligned_cols=83 Identities=24% Similarity=0.335 Sum_probs=38.4
Q ss_pred CCCCcEEEccCCCCC-CCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCC-CchhhcCCCCCCcE
Q 036985 107 LPYLETLDLSNNFFS-GSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEG-TIPASFNGLSSLKR 184 (424)
Q Consensus 107 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~ 184 (424)
+|.|+.|.+.+-.+. +.+.....++|+|..||+|++.++.. ..++++++|+.|.+.+=.+.. ..-..+.++++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455555555554432 12223334455555555555555522 344555555555554443331 11123445555555
Q ss_pred EEeeccc
Q 036985 185 LEIQSNK 191 (424)
Q Consensus 185 L~l~~n~ 191 (424)
||+|...
T Consensus 225 LDIS~~~ 231 (699)
T KOG3665|consen 225 LDISRDK 231 (699)
T ss_pred eeccccc
Confidence 5555443
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.56 E-value=2.4e-06 Score=79.37 Aligned_cols=84 Identities=25% Similarity=0.177 Sum_probs=49.7
Q ss_pred CceeEEEeCCCCCccccC--CCcCCCCCCcEEEccCCC-CCCCcchhc-CCCcCCceEEcccC-cccccCCcc-ccCCCc
Q 036985 84 SRVTELNLDQAGYSGSLS--TTSWNLPYLETLDLSNNF-FSGSIPESL-SNLTRLIRLGLSRN-SFSGEIPAS-IGSLSS 157 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~--~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n-~i~~~~p~~-~~~l~~ 157 (424)
..+++|.++++.-.+.-+ ..-.++|+++.|.+.++. +++..-..+ ..+++|++|++..| .++...-.. -..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 467788888776544322 233567888888887775 333222223 35777888888774 444322221 235677
Q ss_pred CceEecccCc
Q 036985 158 LEELYLDYNN 167 (424)
Q Consensus 158 L~~L~L~~n~ 167 (424)
|++|+++.+.
T Consensus 218 L~~lNlSwc~ 227 (483)
T KOG4341|consen 218 LKYLNLSWCP 227 (483)
T ss_pred HHHhhhccCc
Confidence 8888887764
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.49 E-value=4.2e-06 Score=77.78 Aligned_cols=276 Identities=18% Similarity=0.061 Sum_probs=155.2
Q ss_pred CCCcEEEccCCCCCCCc--chhcCCCcCCceEEcccCc-ccccCCccc-cCCCcCceEecccCc-CCCCchh-hcCCCCC
Q 036985 108 PYLETLDLSNNFFSGSI--PESLSNLTRLIRLGLSRNS-FSGEIPASI-GSLSSLEELYLDYNN-LEGTIPA-SFNGLSS 181 (424)
Q Consensus 108 ~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~-i~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~ 181 (424)
..|+.|.++++.=.+.- -..-.+++++++|.+.++. +++..-..+ ..+++|++|++..+. ++...-+ --..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46889999988644332 2334578999999999884 443322233 357899999998853 3322222 2346899
Q ss_pred CcEEEeecccc-cccC--CCCCCCCCcCEEEccCCcCCCCCCCccc------cCCcEEEcccCc-CCCCCh-hhhcCCCC
Q 036985 182 LKRLEIQSNKL-TGEF--PELGSLKNLYFLDASDNAISGKLPAILP------TSLVQISMRNNN-LQGTVP-ESLKLLSY 250 (424)
Q Consensus 182 L~~L~l~~n~l-~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~------~~L~~L~l~~n~-l~~~~~-~~l~~l~~ 250 (424)
|++|+++.+.- ++.- +-..+...++.+.+.++.- .....+. ..+..+++..+. +++..- ..-..+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 99999998753 3311 1155566666665554321 1111111 335555555543 333221 11234667
Q ss_pred CcEEEeeCCcCCCCc-Ccc-ccCCCCCCEEeccCCc-CCCCCCCCCCCCCcccCCCCcEEEccCCCCC--CCChhhhcCC
Q 036985 251 LQVVDLSHNKLSGSV-PSF-VFSHPSLQQLTLSFNQ-FTSIQQPAPTNDNNIFSSQLIAVDISNNELQ--GMLPLFMALM 325 (424)
Q Consensus 251 L~~L~Ls~n~l~~~~-~~~-l~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~l~~l 325 (424)
|+.|+.+++.-.+.. -.. -...++|+.|-++.++ +++....... ..++.|+.+++.++... +.+...-.++
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----cCChhhhhhcccccceehhhhHhhhccCC
Confidence 788888776443221 111 2345788888888876 3432222222 56678888888877543 2223333467
Q ss_pred CCCCEEeccCCcCc-ccCchhHHhhcCCCCCCCCCccEEEccCCcC-ccccChhhhhhccCCcEEEccCCC
Q 036985 326 PKLSALSLENNKFT-GMIPTEYAIRVAVPGPGIAPFQRLLLGGNYL-FGAIPRSLLELQPGSANVRLADNC 394 (424)
Q Consensus 326 ~~L~~L~L~~N~l~-~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l-~~~~p~~~~~l~~~L~~L~l~~N~ 394 (424)
+.|+++.++++... +..-..+.... .++..|+.+.|+++.. ++..-+.+... ++|+.+++-+.+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~----c~~~~l~~lEL~n~p~i~d~~Le~l~~c-~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSS----CSLEGLEVLELDNCPLITDATLEHLSIC-RNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhcc----ccccccceeeecCCCCchHHHHHHHhhC-cccceeeeechh
Confidence 88888888877543 22111222211 2445588888888744 34444445555 578877777764
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.42 E-value=5.9e-05 Score=66.25 Aligned_cols=40 Identities=35% Similarity=0.438 Sum_probs=18.1
Q ss_pred CCCCCcEEEccCC--CCCCCcchhcCCCcCCceEEcccCccc
Q 036985 106 NLPYLETLDLSNN--FFSGSIPESLSNLTRLIRLGLSRNSFS 145 (424)
Q Consensus 106 ~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~i~ 145 (424)
.+++|+.|.++.| ++.+.++-....+|+|++|+++.|++.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 4445555555555 333333322333355555555555444
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.36 E-value=0.00075 Score=54.16 Aligned_cols=102 Identities=16% Similarity=0.206 Sum_probs=49.6
Q ss_pred CCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEe
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELY 162 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 162 (424)
.++++.+.+.. .+.......|..++.|+.+.+.++ +.......|.+++.++.+.+.. .+.......|..+++|+.++
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 34566666664 455444556677777777777664 5434445666776777777755 33323344566677777777
Q ss_pred cccCcCCCCchhhcCCCCCCcEEEeec
Q 036985 163 LDYNNLEGTIPASFNGLSSLKRLEIQS 189 (424)
Q Consensus 163 L~~n~l~~~~~~~l~~l~~L~~L~l~~ 189 (424)
+..+ +.......|.+. +|+.+.+..
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC
Confidence 7554 443444455555 666666654
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.33 E-value=0.00091 Score=53.68 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=32.5
Q ss_pred CcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCC
Q 036985 103 TSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSL 182 (424)
Q Consensus 103 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 182 (424)
.|.++++|+.+.+.. .+.......|.++++|+.+.+..+ +.......|.++++++++.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 345555555555553 333233344555555555555443 3323333455554555555543 2222223344445555
Q ss_pred cEEEeec
Q 036985 183 KRLEIQS 189 (424)
Q Consensus 183 ~~L~l~~ 189 (424)
+.+++..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 5555543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00014 Score=63.87 Aligned_cols=85 Identities=25% Similarity=0.327 Sum_probs=47.8
Q ss_pred hcCCCCCcEEEeeCC--cCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCC---h
Q 036985 245 LKLLSYLQVVDLSHN--KLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGML---P 319 (424)
Q Consensus 245 l~~l~~L~~L~Ls~n--~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~---~ 319 (424)
+-.+++|+.|.++.| ++.+.++-....+|+|++|++++|++..+...... ..+.+|..|++.+|..+... -
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl----~~l~nL~~Ldl~n~~~~~l~dyre 136 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL----KELENLKSLDLFNCSVTNLDDYRE 136 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh----hhhcchhhhhcccCCccccccHHH
Confidence 344566777777777 44444444444457777777777776654333222 44566777777777655421 1
Q ss_pred hhhcCCCCCCEEec
Q 036985 320 LFMALMPKLSALSL 333 (424)
Q Consensus 320 ~~l~~l~~L~~L~L 333 (424)
..|.-+++|++|+=
T Consensus 137 ~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDG 150 (260)
T ss_pred HHHHHhhhhccccc
Confidence 23455566666543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=2.9e-05 Score=68.64 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=54.8
Q ss_pred CCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCc
Q 036985 226 SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLI 305 (424)
Q Consensus 226 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~ 305 (424)
+++.|++.++.++++ ....+++.|+.|.|+-|+|+.. ..+..+.+|+.|+|..|.|.++.....+ ..+++|+
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YL----knlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYL----KNLPSLR 91 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHH----hcCchhh
Confidence 344555555555532 2344566666666666666633 2255566666666666666655443333 4556666
Q ss_pred EEEccCCCCCCCChh-----hhcCCCCCCEEe
Q 036985 306 AVDISNNELQGMLPL-----FMALMPKLSALS 332 (424)
Q Consensus 306 ~L~Ls~n~l~~~~~~-----~l~~l~~L~~L~ 332 (424)
.|.|..|.-.+.-+. .+..+|+|++||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666655443322 344566666654
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=4.6e-05 Score=67.44 Aligned_cols=99 Identities=28% Similarity=0.278 Sum_probs=72.5
Q ss_pred CCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCch-hhcCCCCCCcEE
Q 036985 107 LPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIP-ASFNGLSSLKRL 185 (424)
Q Consensus 107 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L 185 (424)
+.+.+.|+.-++.+.++ ....+|+.|++|.|+-|+|+..- .+..+++|++|+|..|.|....- .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 55677888888888743 23567889999999999988543 37788899999999998874211 234678888888
Q ss_pred EeecccccccCCC------CCCCCCcCEEE
Q 036985 186 EIQSNKLTGEFPE------LGSLKNLYFLD 209 (424)
Q Consensus 186 ~l~~n~l~~~~~~------l~~l~~L~~L~ 209 (424)
.|..|.-.+.... +.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888877655443 56677777776
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.53 E-value=1e-05 Score=79.55 Aligned_cols=63 Identities=24% Similarity=0.240 Sum_probs=38.8
Q ss_pred CcCceEecccCcCCCCch----hhcCCCCCCcEEEeecccccccCCC-----CCCC-CCcCEEEccCCcCCCC
Q 036985 156 SSLEELYLDYNNLEGTIP----ASFNGLSSLKRLEIQSNKLTGEFPE-----LGSL-KNLYFLDASDNAISGK 218 (424)
Q Consensus 156 ~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~-----l~~l-~~L~~L~l~~n~l~~~ 218 (424)
..+..|.|.+|.+..... ..+.....|+.|++++|.+.+.... +... ..+++|++..|.++..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~ 159 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE 159 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc
Confidence 347888888888875433 3456677888888888887732211 2222 4455566666555543
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.32 E-value=3.4e-05 Score=75.85 Aligned_cols=189 Identities=23% Similarity=0.204 Sum_probs=116.1
Q ss_pred CCCcEEEeecccccccCCC-----CCCCCCcCEEEccCCcCCCCCCCccc-------cCCcEEEcccCcCCCC----Chh
Q 036985 180 SSLKRLEIQSNKLTGEFPE-----LGSLKNLYFLDASDNAISGKLPAILP-------TSLVQISMRNNNLQGT----VPE 243 (424)
Q Consensus 180 ~~L~~L~l~~n~l~~~~~~-----l~~l~~L~~L~l~~n~l~~~~~~~~~-------~~L~~L~l~~n~l~~~----~~~ 243 (424)
..+..+.+.+|.+...... +...+.|+.|++++|.+.+.....+. ..++.|++..|.++.. +..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 3478889999988754332 67788899999999988744322222 4566677777777653 344
Q ss_pred hhcCCCCCcEEEeeCCcCCCC----cCcccc----CCCCCCEEeccCCcCCCCCCCCCCCCCcccCCC-CcEEEccCCCC
Q 036985 244 SLKLLSYLQVVDLSHNKLSGS----VPSFVF----SHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQ-LIAVDISNNEL 314 (424)
Q Consensus 244 ~l~~l~~L~~L~Ls~n~l~~~----~~~~l~----~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~-L~~L~Ls~n~l 314 (424)
.+.....++.++++.|.+... ++..+. ...++++|++.+|.++..... .........+. +.+|++..|.+
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~-~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA-LLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH-HHHHHHhccchhhHHHHHHhcCc
Confidence 556678888888888887421 222222 356778888888877642110 00000012233 56678888877
Q ss_pred CCCC----hhhhcCC-CCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccc
Q 036985 315 QGML----PLFMALM-PKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGA 373 (424)
Q Consensus 315 ~~~~----~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~ 373 (424)
.+.. ...+..+ ..++.++++.|.|++.....+..... .++.++++.+++|.+...
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~----~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLV----SCRQLEELSLSNNPLTDY 305 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHh----hhHHHHHhhcccCccccH
Confidence 6441 2233444 56677888888777666555554333 344577788888877543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.96 E-value=0.0018 Score=34.19 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=10.7
Q ss_pred ccEEEccCCcCccccChhhh
Q 036985 360 FQRLLLGGNYLFGAIPRSLL 379 (424)
Q Consensus 360 L~~L~Ls~N~l~~~~p~~~~ 379 (424)
|++|+|++|+++ .+|.+|.
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 566666666665 4555443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.95 E-value=0.0041 Score=30.48 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=7.4
Q ss_pred CCcEEEccCCCCCCCC
Q 036985 384 GSANVRLADNCLYRCP 399 (424)
Q Consensus 384 ~L~~L~l~~N~l~~ip 399 (424)
+|+.|++++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5566666666666554
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.77 E-value=0.0036 Score=33.02 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=11.2
Q ss_pred CcEEEccCCCCCCCCCcc
Q 036985 385 SANVRLADNCLYRCPFSF 402 (424)
Q Consensus 385 L~~L~l~~N~l~~ip~~~ 402 (424)
|++|++++|+|+.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 566666666666666653
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.58 E-value=0.0014 Score=65.36 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=21.1
Q ss_pred CcEEEccCCCCC-CCChhhhcC-CCCCCEEeccCCcCc
Q 036985 304 LIAVDISNNELQ-GMLPLFMAL-MPKLSALSLENNKFT 339 (424)
Q Consensus 304 L~~L~Ls~n~l~-~~~~~~l~~-l~~L~~L~L~~N~l~ 339 (424)
++.|+++.+... ...-..... +..++.+++.++...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 778888887643 222222222 567777878776543
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.60 E-value=0.00065 Score=58.77 Aligned_cols=87 Identities=25% Similarity=0.262 Sum_probs=54.0
Q ss_pred cCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCc
Q 036985 104 SWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLK 183 (424)
Q Consensus 104 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 183 (424)
+..+...+.||++.|++. ..-..|+-++.|..|+++.|.+. ..|..++....++.+++..|..+ ..|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 445556666666666554 23334555566666666666666 56666666666666666666655 5666666666666
Q ss_pred EEEeeccccc
Q 036985 184 RLEIQSNKLT 193 (424)
Q Consensus 184 ~L~l~~n~l~ 193 (424)
++++.+|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 6666666544
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.46 E-value=0.029 Score=30.84 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=17.7
Q ss_pred cCCcEEEccCCCCCCCCCcccc
Q 036985 383 PGSANVRLADNCLYRCPFSFFF 404 (424)
Q Consensus 383 ~~L~~L~l~~N~l~~ip~~~~~ 404 (424)
++|++|++++|.|+.+|...|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 3788888888888888887664
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.46 E-value=0.029 Score=30.84 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=17.7
Q ss_pred cCCcEEEccCCCCCCCCCcccc
Q 036985 383 PGSANVRLADNCLYRCPFSFFF 404 (424)
Q Consensus 383 ~~L~~L~l~~N~l~~ip~~~~~ 404 (424)
++|++|++++|.|+.+|...|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 3788888888888888887664
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.17 E-value=0.0071 Score=52.51 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=38.8
Q ss_pred hcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCc
Q 036985 322 MALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFS 401 (424)
Q Consensus 322 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~ 401 (424)
+..+.+.+.||++.|++. .....|..+.. ++.|+++.|.+. ..|..+.+.. .+..+++.+|+.+..|.+
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~--------~~rl~~sknq~~-~~~~d~~q~~-e~~~~~~~~n~~~~~p~s 106 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTR--------LVRLDLSKNQIK-FLPKDAKQQR-ETVNAASHKNNHSQQPKS 106 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHH--------HHHHhccHhhHh-hChhhHHHHH-HHHHHHhhccchhhCCcc
Confidence 334444445555555443 12223333333 445555555543 4455554442 444455555555555554
Q ss_pred cccccCCCcccccccCc
Q 036985 402 FFFCQGARQKSLVECNR 418 (424)
Q Consensus 402 ~~~~~~~l~~l~l~~n~ 418 (424)
...... ++++++..|.
T Consensus 107 ~~k~~~-~k~~e~k~~~ 122 (326)
T KOG0473|consen 107 QKKEPH-PKKNEQKKTE 122 (326)
T ss_pred ccccCC-cchhhhccCc
Confidence 444443 4444444443
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.92 E-value=0.032 Score=47.52 Aligned_cols=86 Identities=21% Similarity=0.097 Sum_probs=64.0
Q ss_pred CCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCC-cCccccChhhhh
Q 036985 302 SQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGN-YLFGAIPRSLLE 380 (424)
Q Consensus 302 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N-~l~~~~p~~~~~ 380 (424)
..++.+|-++..|..+.-..+.+++.++.|.+.+|.-.+. ..+..+.. ..++|+.|+|++| +||+.--.++.+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD--~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDD--WCLERLGG----LAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhh--HHHHHhcc----cccchheeeccCCCeechhHHHHHHH
Confidence 4578899999988877777788888899999988855432 22333322 4466999999988 888877788888
Q ss_pred hccCCcEEEccCCC
Q 036985 381 LQPGSANVRLADNC 394 (424)
Q Consensus 381 l~~~L~~L~l~~N~ 394 (424)
++ +|+.|.+.+=+
T Consensus 175 lk-nLr~L~l~~l~ 187 (221)
T KOG3864|consen 175 LK-NLRRLHLYDLP 187 (221)
T ss_pred hh-hhHHHHhcCch
Confidence 84 99988887643
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.53 E-value=0.051 Score=54.15 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=17.6
Q ss_pred cCCCCcEEEccCCC-CCCCChhhhcC-CCCCCEEeccCCc
Q 036985 300 FSSQLIAVDISNNE-LQGMLPLFMAL-MPKLSALSLENNK 337 (424)
Q Consensus 300 ~~~~L~~L~Ls~n~-l~~~~~~~l~~-l~~L~~L~L~~N~ 337 (424)
.+++|+.|+++++. +++..-..+.. +++|+.|.+.++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 34555555555554 44332222222 4555555554444
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.13 E-value=0.099 Score=28.59 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.6
Q ss_pred cCCcEEEccCCCCCCCCC
Q 036985 383 PGSANVRLADNCLYRCPF 400 (424)
Q Consensus 383 ~~L~~L~l~~N~l~~ip~ 400 (424)
++|++|++++|+|+++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 478899999999999987
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.70 E-value=0.018 Score=49.08 Aligned_cols=85 Identities=14% Similarity=0.070 Sum_probs=53.6
Q ss_pred CCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCC-CCCCCChhhhcCCCCC
Q 036985 250 YLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNN-ELQGMLPLFMALMPKL 328 (424)
Q Consensus 250 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~l~~L 328 (424)
.++.+|-++..|..+.-+.+..++.++.|.+.+|.--+-.....+. ...++|+.|++++| .|++..-..+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~---~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG---GLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc---ccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 4566677777666555566666677777776666432200000010 24578888888888 6776666678888888
Q ss_pred CEEeccCCc
Q 036985 329 SALSLENNK 337 (424)
Q Consensus 329 ~~L~L~~N~ 337 (424)
+.|.+.+=.
T Consensus 179 r~L~l~~l~ 187 (221)
T KOG3864|consen 179 RRLHLYDLP 187 (221)
T ss_pred HHHHhcCch
Confidence 888886543
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.61 E-value=0.061 Score=28.86 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=7.8
Q ss_pred CccEEEccCCcCccccC
Q 036985 359 PFQRLLLGGNYLFGAIP 375 (424)
Q Consensus 359 ~L~~L~Ls~N~l~~~~p 375 (424)
+|++|+|++|+|++..+
T Consensus 3 ~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 3 NLETLDLSNNQITDEGA 19 (24)
T ss_dssp T-SEEE-TSSBEHHHHH
T ss_pred CCCEEEccCCcCCHHHH
Confidence 35555555555554433
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.28 E-value=0.1 Score=28.00 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=10.7
Q ss_pred CCCCEEeccCCcCcccCchh
Q 036985 326 PKLSALSLENNKFTGMIPTE 345 (424)
Q Consensus 326 ~~L~~L~L~~N~l~~~~~~~ 345 (424)
++|++|+|++|+|++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 56666777777666544433
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.42 E-value=0.44 Score=25.98 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=7.3
Q ss_pred CcCceEecccCcCC
Q 036985 156 SSLEELYLDYNNLE 169 (424)
Q Consensus 156 ~~L~~L~L~~n~l~ 169 (424)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 87
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.42 E-value=0.44 Score=25.98 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=7.3
Q ss_pred CcCceEecccCcCC
Q 036985 156 SSLEELYLDYNNLE 169 (424)
Q Consensus 156 ~~L~~L~L~~n~l~ 169 (424)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=87.90 E-value=2.6 Score=40.93 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=13.7
Q ss_pred CcCCceEEcccCcccccCCccc
Q 036985 131 LTRLIRLGLSRNSFSGEIPASI 152 (424)
Q Consensus 131 l~~L~~L~L~~n~i~~~~p~~~ 152 (424)
-+.+++++++.|.+....|..+
T Consensus 164 npr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred cchhhhhccCCCcccccCCccc
Confidence 3456777777777765555444
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=81.65 E-value=1.4 Score=43.53 Aligned_cols=67 Identities=27% Similarity=0.387 Sum_probs=31.8
Q ss_pred CCCCcEEEccCCCCCCC--ChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccc
Q 036985 301 SSQLIAVDISNNELQGM--LPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGA 373 (424)
Q Consensus 301 ~~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~ 373 (424)
.+.+..+.|++|++... +...-...|+|+.|+|++|+..-....++.+... ..|++|-+.+|.++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~------l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG------LPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC------CCHHHeeecCCccccc
Confidence 34455555555554422 1122234566667777766222112223333222 2267777777776543
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=75.83 E-value=12 Score=36.59 Aligned_cols=228 Identities=20% Similarity=0.118 Sum_probs=111.1
Q ss_pred CCcEEEccCCCCCCCcchhcCCC---cCCceEEcccCcccc---cCCccccCCCcCceEecccCcCCC----Cch----h
Q 036985 109 YLETLDLSNNFFSGSIPESLSNL---TRLIRLGLSRNSFSG---EIPASIGSLSSLEELYLDYNNLEG----TIP----A 174 (424)
Q Consensus 109 ~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n~i~~---~~p~~~~~l~~L~~L~L~~n~l~~----~~~----~ 174 (424)
.+.+++++.|...+.+|..+..+ .-++.++.+...+.- .-+-.++.-++|+..+++.|.... +.+ +
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 46778888888776666544322 246677776655541 122234455677788887776541 111 2
Q ss_pred hcCCCCCCcEEEeecccccccCCC-----CC--CCCCcCEEEccCCcCCCCCCCc---cccCCcEEEcccCcCCCCChhh
Q 036985 175 SFNGLSSLKRLEIQSNKLTGEFPE-----LG--SLKNLYFLDASDNAISGKLPAI---LPTSLVQISMRNNNLQGTVPES 244 (424)
Q Consensus 175 ~l~~l~~L~~L~l~~n~l~~~~~~-----l~--~l~~L~~L~l~~n~l~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~ 244 (424)
.|+.-.++ +|++..+......+. .. .-+.=-.+++..|...+.-... +...++++....|.+.+.....
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v 373 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV 373 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence 23333455 666655543321111 00 0011123444444443222111 1156777777777776544332
Q ss_pred --hcCCCCCcEEEeeCCcCCC-CcCcccc--------CCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCC
Q 036985 245 --LKLLSYLQVVDLSHNKLSG-SVPSFVF--------SHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNE 313 (424)
Q Consensus 245 --l~~l~~L~~L~Ls~n~l~~-~~~~~l~--------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 313 (424)
...-+..+.+++..-.-.- .++.... ..--+..+.++.|.+... ....+ .....-+.+..|++++|.
T Consensus 374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~-l~s~i-n~l~stqtl~kldisgn~ 451 (553)
T KOG4242|consen 374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAG-LESAI-NKLLSTQTLAKLDISGNG 451 (553)
T ss_pred cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCccccc-HHHHH-HhhccCcccccccccCCC
Confidence 2334455666654432210 0111111 112355666666666542 11111 011344667788888876
Q ss_pred CCC----CChhhhcCCCCCCEEeccCCcCc
Q 036985 314 LQG----MLPLFMALMPKLSALSLENNKFT 339 (424)
Q Consensus 314 l~~----~~~~~l~~l~~L~~L~L~~N~l~ 339 (424)
... .+|..+....+++.+..+.|...
T Consensus 452 mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 452 MGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 643 24444555556777777766554
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.71 E-value=1.6 Score=43.08 Aligned_cols=66 Identities=23% Similarity=0.241 Sum_probs=34.5
Q ss_pred cCCCCCcEEEeeCCcCCCC--cCccccCCCCCCEEeccCC--cCCCCCCCCCCCCCcccCCCCcEEEccCCCCCC
Q 036985 246 KLLSYLQVVDLSHNKLSGS--VPSFVFSHPSLQQLTLSFN--QFTSIQQPAPTNDNNIFSSQLIAVDISNNELQG 316 (424)
Q Consensus 246 ~~l~~L~~L~Ls~n~l~~~--~~~~l~~~~~L~~L~L~~n--~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 316 (424)
.+.+.+..+.|++|++... +...-...|+|+.|+|++| .+........ .....|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K-----~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK-----LKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh-----hcCCCHHHeeecCCcccc
Confidence 3456667777777776532 1111223467777777777 3332111100 223456677777776653
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.06 E-value=2.6 Score=23.10 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=6.7
Q ss_pred CCCEEeccCCcCCC
Q 036985 274 SLQQLTLSFNQFTS 287 (424)
Q Consensus 274 ~L~~L~L~~n~l~~ 287 (424)
+|+.|++++|+|+.
T Consensus 3 ~L~~L~L~~NkI~~ 16 (26)
T smart00365 3 NLEELDLSQNKIKK 16 (26)
T ss_pred ccCEEECCCCccce
Confidence 44445555554443
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.06 E-value=2.3 Score=23.68 Aligned_cols=11 Identities=55% Similarity=0.767 Sum_probs=4.4
Q ss_pred CCEEeccCCcC
Q 036985 328 LSALSLENNKF 338 (424)
Q Consensus 328 L~~L~L~~N~l 338 (424)
|++|+|++|.+
T Consensus 4 L~~LdL~~N~i 14 (28)
T smart00368 4 LRELDLSNNKL 14 (28)
T ss_pred cCEEECCCCCC
Confidence 33444444433
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=45.45 E-value=11 Score=20.38 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=5.3
Q ss_pred CccEEEccCC
Q 036985 359 PFQRLLLGGN 368 (424)
Q Consensus 359 ~L~~L~Ls~N 368 (424)
.|++|+|++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3555555555
No 95
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=27.53 E-value=25 Score=24.77 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHH
Q 036985 3 TLSFSLSFSVLLLA 16 (424)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (424)
.+..+++|.++||.
T Consensus 2 KLt~vliVavLllt 15 (75)
T PF02950_consen 2 KLTCVLIVAVLLLT 15 (75)
T ss_dssp --------------
T ss_pred CcchHHHHHHHHHH
Confidence 34444444444444
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.77 E-value=52 Score=39.71 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=17.7
Q ss_pred eccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCC
Q 036985 279 TLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQ 315 (424)
Q Consensus 279 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 315 (424)
||++|+|+.++...+ ..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F-----~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGIC-----ANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHh-----ccCCCceEEEeeCCccc
Confidence 356666666544333 34556666666666554
No 97
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=23.94 E-value=1.3e+02 Score=18.61 Aligned_cols=7 Identities=43% Similarity=0.486 Sum_probs=2.7
Q ss_pred cCCcEEE
Q 036985 225 TSLVQIS 231 (424)
Q Consensus 225 ~~L~~L~ 231 (424)
.+|++|.
T Consensus 34 ~sl~~L~ 40 (44)
T PF05725_consen 34 NSLKSLS 40 (44)
T ss_pred CCceEEE
Confidence 3344433
No 98
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=23.26 E-value=1.4e+02 Score=25.82 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHhhhhccCCCHhHHHHHHHHHh
Q 036985 4 LSFSLSFSVLLLATASWLAESKTYWGDIQVMKELKN 39 (424)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 39 (424)
+--+++|.+++|+|...+-++......+..|++-|+
T Consensus 131 LIClIIIAVLfLICT~LfLSTVVLANKVS~LKrskQ 166 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLFLSTVVLANKVSSLKRSKQ 166 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566677777777777777788888887766
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.32 E-value=68 Score=38.83 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=26.7
Q ss_pred EcccCcccccCCccccCCCcCceEecccCcCC
Q 036985 138 GLSRNSFSGEIPASIGSLSSLEELYLDYNNLE 169 (424)
Q Consensus 138 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~ 169 (424)
||++|+|+...+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998666677888999999999998776
Done!