Query 036985
Match_columns 424
No_of_seqs 550 out of 4198
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 12:15:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.5E-46 1.2E-50 390.8 27.9 376 22-424 5-459 (768)
2 4eco_A Uncharacterized protein 100.0 3.4E-46 1.2E-50 382.6 19.5 382 23-424 24-559 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 1.8E-43 6E-48 369.5 24.2 373 23-416 263-785 (876)
4 3rgz_A Protein brassinosteroid 100.0 9.9E-44 3.4E-48 372.2 20.5 259 83-346 293-558 (768)
5 3v47_A TOLL-like receptor 5B a 100.0 1.5E-41 5.3E-46 335.1 24.0 327 84-424 30-412 (455)
6 1ogq_A PGIP-2, polygalacturona 100.0 3.7E-41 1.3E-45 315.8 16.9 297 25-372 2-306 (313)
7 4eco_A Uncharacterized protein 100.0 7.7E-40 2.6E-44 335.5 22.4 323 82-421 247-601 (636)
8 2id5_A Lingo-1, leucine rich r 100.0 4.1E-38 1.4E-42 312.5 27.5 299 84-396 32-333 (477)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-38 4.4E-43 325.5 23.9 336 80-422 52-560 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-38 1.3E-42 321.9 24.8 330 83-420 31-534 (606)
11 3t6q_A CD180 antigen; protein- 100.0 7.4E-38 2.5E-42 319.9 26.7 326 84-424 33-442 (606)
12 4ecn_A Leucine-rich repeat pro 100.0 3.5E-38 1.2E-42 329.5 24.7 323 80-421 444-841 (876)
13 3t6q_A CD180 antigen; protein- 100.0 8E-38 2.7E-42 319.6 25.7 328 80-421 53-463 (606)
14 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-38 7.6E-43 317.8 21.1 160 247-422 322-483 (520)
15 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.3E-38 2.5E-42 317.0 23.0 318 84-422 52-512 (562)
16 2z63_A TOLL-like receptor 4, v 100.0 6.6E-38 2.2E-42 317.8 22.6 330 80-424 48-535 (570)
17 2id5_A Lingo-1, leucine rich r 100.0 7.8E-38 2.7E-42 310.5 22.0 318 87-421 14-334 (477)
18 3v47_A TOLL-like receptor 5B a 100.0 1.2E-37 4.1E-42 307.3 21.9 306 80-399 50-412 (455)
19 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-37 4.7E-42 314.1 22.7 140 84-223 26-168 (549)
20 3o6n_A APL1; leucine-rich repe 100.0 7.7E-37 2.6E-41 295.5 24.7 310 82-421 43-353 (390)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-36 4.8E-41 304.7 25.6 315 84-422 21-459 (520)
22 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-36 6.5E-41 320.2 26.2 303 83-399 23-378 (844)
23 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-36 3.8E-41 322.0 24.2 336 81-424 45-543 (844)
24 3oja_B Anopheles plasmodium-re 100.0 1.7E-36 5.9E-41 308.8 24.7 309 83-421 50-359 (597)
25 2z63_A TOLL-like receptor 4, v 100.0 9.4E-37 3.2E-41 309.3 21.7 330 84-424 28-511 (570)
26 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-36 1.2E-40 311.4 25.4 256 82-337 47-364 (680)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.2E-36 2.4E-40 302.4 26.0 314 85-422 32-488 (562)
28 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-35 6.1E-40 306.2 28.6 339 84-423 222-600 (680)
29 4fmz_A Internalin; leucine ric 100.0 5.8E-35 2E-39 277.8 29.7 305 82-420 42-346 (347)
30 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-36 5.1E-41 306.5 19.0 333 80-422 46-512 (549)
31 1o6v_A Internalin A; bacterial 100.0 2.6E-34 8.9E-39 284.2 28.4 304 81-421 65-389 (466)
32 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-34 4.7E-39 296.8 25.0 135 84-218 52-188 (635)
33 1o6v_A Internalin A; bacterial 100.0 1.1E-33 3.9E-38 279.6 28.7 306 83-424 45-370 (466)
34 3o6n_A APL1; leucine-rich repe 100.0 4.5E-34 1.5E-38 276.1 23.7 288 106-422 43-333 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-33 5.7E-38 277.0 27.3 318 81-424 61-391 (457)
36 4fmz_A Internalin; leucine ric 100.0 2.1E-33 7.3E-38 267.0 27.2 285 81-397 63-347 (347)
37 3bz5_A Internalin-J, INLJ; leu 100.0 2.6E-33 8.9E-38 275.6 26.8 300 82-422 40-354 (457)
38 2ft3_A Biglycan; proteoglycan, 100.0 4.8E-33 1.6E-37 263.0 24.8 290 85-418 34-331 (332)
39 3oja_B Anopheles plasmodium-re 100.0 3.6E-33 1.2E-37 284.3 24.1 288 106-422 49-339 (597)
40 1xku_A Decorin; proteoglycan, 100.0 8.1E-33 2.8E-37 261.2 24.2 291 85-418 32-330 (330)
41 1xku_A Decorin; proteoglycan, 100.0 8.8E-33 3E-37 261.0 24.3 268 109-421 32-307 (330)
42 2ft3_A Biglycan; proteoglycan, 100.0 5.6E-33 1.9E-37 262.5 22.5 274 83-394 53-331 (332)
43 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-34 1.3E-38 268.0 13.8 254 108-400 50-309 (313)
44 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-32 5.1E-37 281.7 23.8 327 80-420 72-580 (635)
45 4fcg_A Uncharacterized protein 100.0 2.6E-33 8.9E-38 264.0 16.5 285 23-371 21-314 (328)
46 1jl5_A Outer protein YOPM; leu 100.0 6.5E-32 2.2E-36 265.4 20.0 302 80-421 30-371 (454)
47 1jl5_A Outer protein YOPM; leu 100.0 1.6E-30 5.5E-35 255.5 27.4 292 84-424 91-415 (454)
48 2z80_A TOLL-like receptor 2, v 100.0 2.1E-31 7E-36 254.0 17.3 270 92-375 39-318 (353)
49 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-33 4.7E-38 278.6 -5.0 324 83-420 27-411 (461)
50 2z80_A TOLL-like receptor 2, v 100.0 1.4E-30 4.6E-35 248.3 15.5 274 107-398 30-316 (353)
51 2z66_A Variable lymphocyte rec 100.0 2.7E-30 9.2E-35 241.3 15.8 245 88-341 11-263 (306)
52 2z66_A Variable lymphocyte rec 100.0 1.1E-29 3.7E-34 237.2 16.6 248 111-373 10-263 (306)
53 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-32 6.4E-37 270.5 -2.6 334 84-421 3-384 (461)
54 3zyi_A Leucine-rich repeat-con 100.0 1.1E-28 3.8E-33 242.9 23.7 226 85-339 76-303 (452)
55 4fcg_A Uncharacterized protein 100.0 2.6E-29 9E-34 236.7 18.2 239 106-400 79-318 (328)
56 3zyi_A Leucine-rich repeat-con 100.0 1.5E-28 5.1E-33 242.0 23.2 247 87-372 57-304 (452)
57 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-28 4.2E-33 227.6 20.7 256 86-380 13-270 (285)
58 3zyj_A Leucine-rich repeat-con 100.0 2.4E-28 8.3E-33 239.6 24.0 243 88-340 47-293 (440)
59 3g06_A SSPH2 (leucine-rich rep 100.0 2.2E-28 7.4E-33 247.8 23.0 260 84-398 40-299 (622)
60 3zyj_A Leucine-rich repeat-con 100.0 2.8E-28 9.5E-33 239.2 22.9 229 83-316 63-293 (440)
61 3o53_A Protein LRIM1, AGAP0063 100.0 8.8E-31 3E-35 245.8 3.8 260 85-393 11-272 (317)
62 1ozn_A Reticulon 4 receptor; N 100.0 9.2E-29 3.1E-33 228.5 16.1 204 83-286 31-238 (285)
63 3g06_A SSPH2 (leucine-rich rep 100.0 3.9E-27 1.3E-31 238.6 26.6 261 108-423 40-300 (622)
64 1wwl_A Monocyte differentiatio 100.0 2.4E-30 8.3E-35 242.2 2.4 84 130-214 93-184 (312)
65 3o53_A Protein LRIM1, AGAP0063 100.0 4.8E-30 1.6E-34 240.8 4.3 264 110-422 12-278 (317)
66 1wwl_A Monocyte differentiatio 100.0 1.9E-29 6.4E-34 236.2 5.0 202 178-396 93-309 (312)
67 3oja_A Leucine-rich immune mol 100.0 1.6E-28 5.5E-33 243.5 10.5 234 133-391 35-270 (487)
68 2o6q_A Variable lymphocyte rec 99.9 4.9E-26 1.7E-30 208.5 22.1 216 59-315 2-218 (270)
69 3oja_A Leucine-rich immune mol 99.9 1.4E-27 4.8E-32 236.7 7.9 237 154-415 32-270 (487)
70 2z62_A TOLL-like receptor 4, v 99.9 2.7E-25 9.4E-30 204.1 20.0 225 89-343 12-241 (276)
71 2z62_A TOLL-like receptor 4, v 99.9 1.3E-24 4.3E-29 199.7 20.3 209 84-317 28-239 (276)
72 3rfs_A Internalin B, repeat mo 99.9 2.3E-25 8E-30 204.1 12.3 226 109-382 20-246 (272)
73 3rfs_A Internalin B, repeat mo 99.9 2.1E-25 7.3E-30 204.4 11.3 226 84-349 19-245 (272)
74 2o6q_A Variable lymphocyte rec 99.9 7.6E-24 2.6E-28 193.9 21.5 200 181-396 17-218 (270)
75 1p9a_G Platelet glycoprotein I 99.9 4.2E-24 1.4E-28 197.5 18.9 200 176-395 6-207 (290)
76 3goz_A Leucine-rich repeat-con 99.9 7E-26 2.4E-30 216.4 6.8 269 88-375 2-301 (362)
77 4glp_A Monocyte differentiatio 99.9 7.8E-24 2.7E-28 197.8 18.1 223 107-340 63-308 (310)
78 3goz_A Leucine-rich repeat-con 99.9 7.1E-26 2.4E-30 216.3 4.2 247 83-348 21-306 (362)
79 3ogk_B Coronatine-insensitive 99.9 1.2E-26 4.2E-31 236.0 -2.4 322 85-422 139-528 (592)
80 1p9a_G Platelet glycoprotein I 99.9 3.3E-23 1.1E-27 191.5 20.6 197 82-285 8-207 (290)
81 4glp_A Monocyte differentiatio 99.9 2.7E-24 9.2E-29 200.9 11.6 223 84-316 64-308 (310)
82 2ast_B S-phase kinase-associat 99.9 4E-25 1.4E-29 208.8 5.0 247 133-399 48-309 (336)
83 2xwt_C Thyrotropin receptor; s 99.9 2.3E-23 8E-28 187.0 16.2 196 109-336 32-236 (239)
84 2ast_B S-phase kinase-associat 99.9 2.3E-25 8E-30 210.5 3.0 264 71-380 39-315 (336)
85 2ca6_A RAN GTPase-activating p 99.9 2.5E-25 8.5E-30 214.5 3.2 247 124-399 24-319 (386)
86 2ca6_A RAN GTPase-activating p 99.9 5.5E-26 1.9E-30 219.1 -1.7 264 100-393 24-340 (386)
87 3ogk_B Coronatine-insensitive 99.9 2.1E-26 7.3E-31 234.3 -5.5 332 83-421 111-502 (592)
88 3m19_A Variable lymphocyte rec 99.9 8.4E-23 2.9E-27 184.8 18.4 185 72-287 8-193 (251)
89 2xwt_C Thyrotropin receptor; s 99.9 3.4E-23 1.2E-27 186.0 15.1 196 84-312 31-236 (239)
90 1h6u_A Internalin H; cell adhe 99.9 1.8E-22 6.3E-27 188.2 16.3 195 104-340 37-231 (308)
91 3m19_A Variable lymphocyte rec 99.9 6.6E-22 2.3E-26 178.9 19.0 178 181-373 15-194 (251)
92 1h6u_A Internalin H; cell adhe 99.9 5.4E-22 1.8E-26 185.0 16.7 193 82-287 39-231 (308)
93 4ay9_X Follicle-stimulating ho 99.9 1.6E-21 5.6E-26 185.2 18.0 236 88-336 13-256 (350)
94 2p1m_B Transport inhibitor res 99.9 2E-24 7E-29 219.7 -4.2 322 83-420 104-519 (594)
95 4ay9_X Follicle-stimulating ho 99.9 1.2E-20 4.1E-25 179.2 19.3 238 111-369 12-257 (350)
96 3cvr_A Invasion plasmid antige 99.9 3.4E-21 1.2E-25 192.8 15.5 201 54-286 35-243 (571)
97 2o6s_A Variable lymphocyte rec 99.9 4.7E-21 1.6E-25 168.2 14.1 160 108-274 28-190 (208)
98 2p1m_B Transport inhibitor res 99.8 3.7E-23 1.3E-27 210.4 -0.9 332 82-420 64-494 (594)
99 3cvr_A Invasion plasmid antige 99.8 2.8E-20 9.7E-25 186.2 17.8 196 133-351 60-255 (571)
100 2o6s_A Variable lymphocyte rec 99.8 3E-20 1E-24 163.0 15.1 177 112-325 11-188 (208)
101 1h6t_A Internalin B; cell adhe 99.8 1.5E-19 5.2E-24 167.0 13.7 169 106-287 44-214 (291)
102 1h6t_A Internalin B; cell adhe 99.8 2.8E-19 9.4E-24 165.2 14.8 191 185-402 29-219 (291)
103 1m9s_A Internalin B; cell inva 99.8 1E-19 3.5E-24 184.0 11.8 189 84-287 21-211 (605)
104 2xot_A Amphoterin-induced prot 99.8 2.6E-19 9E-24 170.6 13.6 178 207-396 22-202 (361)
105 3e6j_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 155.5 15.6 132 108-239 40-173 (229)
106 2v9t_B SLIT homolog 2 protein 99.8 1.2E-18 4.1E-23 154.1 15.3 153 206-372 14-166 (220)
107 2xot_A Amphoterin-induced prot 99.8 7.2E-19 2.5E-23 167.6 13.9 173 87-262 21-202 (361)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-18 4.1E-23 154.1 13.6 153 207-373 15-168 (220)
109 2v9t_B SLIT homolog 2 protein 99.8 2.6E-18 9E-23 151.9 15.3 130 87-219 14-144 (220)
110 4ezg_A Putative uncharacterize 99.8 6.4E-19 2.2E-23 153.1 10.5 151 225-396 44-194 (197)
111 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-18 5.8E-23 153.1 13.0 157 226-399 12-170 (220)
112 3e6j_A Variable lymphocyte rec 99.8 5.1E-18 1.7E-22 151.1 16.1 156 205-375 21-176 (229)
113 1m9s_A Internalin B; cell inva 99.8 5.2E-18 1.8E-22 171.6 16.4 192 155-372 20-211 (605)
114 4ezg_A Putative uncharacterize 99.8 2.9E-18 1E-22 148.9 12.6 151 83-262 43-194 (197)
115 1dce_A Protein (RAB geranylger 99.8 2.9E-21 1E-25 194.1 -8.3 120 251-389 443-566 (567)
116 4b8c_D Glucose-repressible alc 99.8 6.3E-20 2.2E-24 190.0 -0.0 233 25-283 128-369 (727)
117 1xeu_A Internalin C; cellular 99.7 1.4E-18 4.9E-23 157.9 8.3 62 128-193 37-98 (263)
118 1xeu_A Internalin C; cellular 99.7 2.4E-18 8.3E-23 156.4 9.5 148 130-287 17-164 (263)
119 1dce_A Protein (RAB geranylger 99.7 1.8E-20 6.2E-25 188.4 -9.4 110 274-402 442-552 (567)
120 2ell_A Acidic leucine-rich nuc 99.7 4.2E-17 1.5E-21 137.7 10.6 140 247-402 22-166 (168)
121 1w8a_A SLIT protein; signaling 99.7 2E-17 6.8E-22 143.0 8.7 130 87-219 11-142 (192)
122 2ell_A Acidic leucine-rich nuc 99.7 5.6E-17 1.9E-21 137.0 10.6 135 82-218 22-162 (168)
123 1w8a_A SLIT protein; signaling 99.7 1E-16 3.5E-21 138.5 10.9 133 227-375 10-143 (192)
124 4b8c_D Glucose-repressible alc 99.7 7.5E-18 2.6E-22 174.4 3.8 193 85-286 192-404 (727)
125 3sb4_A Hypothetical leucine ri 99.7 3E-17 1E-21 154.3 7.4 282 83-390 24-328 (329)
126 2je0_A Acidic leucine-rich nuc 99.7 6.8E-17 2.3E-21 133.6 7.7 128 83-212 16-149 (149)
127 2je0_A Acidic leucine-rich nuc 99.7 3.1E-16 1.1E-20 129.6 11.0 129 248-392 16-149 (149)
128 2wfh_A SLIT homolog 2 protein 99.7 7.9E-16 2.7E-20 132.9 12.7 127 87-217 13-140 (193)
129 3sb4_A Hypothetical leucine ri 99.6 2.2E-16 7.5E-21 148.4 8.0 257 83-365 48-328 (329)
130 2o6r_A Variable lymphocyte rec 99.6 2.5E-15 8.6E-20 127.9 13.8 130 87-219 10-140 (177)
131 2o6r_A Variable lymphocyte rec 99.6 2.4E-15 8.1E-20 128.1 11.9 133 250-399 8-140 (177)
132 2wfh_A SLIT homolog 2 protein 99.6 7.6E-15 2.6E-19 126.8 14.6 129 206-341 13-141 (193)
133 4fdw_A Leucine rich hypothetic 99.6 2.8E-14 9.6E-19 137.3 19.5 264 107-396 112-383 (401)
134 4fdw_A Leucine rich hypothetic 99.6 5.5E-14 1.9E-18 135.2 18.8 259 132-416 113-379 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.6 9.4E-15 3.2E-19 124.2 9.4 135 244-397 14-154 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.6 6.2E-15 2.1E-19 125.4 8.0 129 83-216 18-153 (176)
137 4fs7_A Uncharacterized protein 99.5 4E-13 1.4E-17 129.3 19.0 302 80-411 67-392 (394)
138 3g39_A Variable lymphocyte rec 99.5 6.2E-14 2.1E-18 118.4 11.1 108 86-196 11-118 (170)
139 1ds9_A Outer arm dynein; leuci 99.5 1.9E-16 6.6E-21 137.5 -5.6 135 242-397 41-186 (198)
140 2r9u_A Variable lymphocyte rec 99.5 2.2E-13 7.4E-18 115.5 11.5 106 87-195 15-120 (174)
141 1ds9_A Outer arm dynein; leuci 99.5 1.8E-16 6.2E-21 137.7 -8.5 133 127-287 43-186 (198)
142 3g39_A Variable lymphocyte rec 99.5 3.3E-13 1.1E-17 113.9 11.6 106 110-218 11-117 (170)
143 2r9u_A Variable lymphocyte rec 99.4 6.1E-13 2.1E-17 112.7 11.6 105 111-218 15-120 (174)
144 4fs7_A Uncharacterized protein 99.4 1.7E-11 5.7E-16 118.0 17.4 292 97-417 60-376 (394)
145 3un9_A NLR family member X1; l 99.4 1.9E-14 6.6E-19 137.0 -3.3 174 203-381 72-262 (372)
146 3un9_A NLR family member X1; l 99.3 5.9E-14 2E-18 133.7 -2.5 169 225-398 72-254 (372)
147 2ifg_A High affinity nerve gro 99.3 1.1E-11 3.9E-16 116.9 10.3 103 89-194 13-117 (347)
148 4gt6_A Cell surface protein; l 99.2 1.2E-09 4.2E-14 104.9 22.8 292 102-419 57-390 (394)
149 2ifg_A High affinity nerve gro 99.2 2.6E-11 9E-16 114.4 10.2 104 112-218 12-118 (347)
150 4gt6_A Cell surface protein; l 99.2 7.2E-10 2.5E-14 106.5 20.2 283 85-395 65-390 (394)
151 4h09_A Hypothetical leucine ri 99.0 2.7E-08 9.1E-13 94.9 21.4 296 84-407 46-356 (379)
152 2ra8_A Uncharacterized protein 99.0 6.9E-11 2.4E-15 111.7 3.2 104 83-189 106-228 (362)
153 2ra8_A Uncharacterized protein 99.0 1.3E-09 4.5E-14 102.9 8.9 160 225-396 139-320 (362)
154 4h09_A Hypothetical leucine ri 98.8 3.8E-07 1.3E-11 86.9 20.9 288 102-416 40-342 (379)
155 1io0_A Tropomodulin; LRR prote 98.7 1.7E-09 5.9E-14 92.2 -0.1 123 243-370 30-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 4.6E-09 1.6E-13 89.5 1.0 126 265-396 28-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 6.7E-07 2.3E-11 80.2 7.3 79 302-389 170-257 (267)
158 3rw6_A Nuclear RNA export fact 98.3 2.7E-07 9.3E-12 82.7 4.0 104 104-210 137-258 (267)
159 3e4g_A ATP synthase subunit S, 98.3 5.1E-07 1.8E-11 75.2 4.3 82 85-166 62-149 (176)
160 3e4g_A ATP synthase subunit S, 98.2 7.2E-07 2.4E-11 74.3 3.1 84 108-191 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 4.8E-06 1.7E-10 70.7 1.1 43 245-287 37-84 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 1.2E-05 4.2E-10 68.2 3.0 123 268-396 36-170 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0025 8.6E-08 50.2 6.9 55 277-339 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.003 1E-07 49.7 6.9 56 207-262 12-68 (130)
165 2lz0_A Uncharacterized protein 60.2 23 0.0008 25.6 6.1 38 102-140 14-51 (100)
166 2lz0_A Uncharacterized protein 59.9 28 0.00095 25.2 6.5 47 119-166 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-46 Score=390.79 Aligned_cols=376 Identities=27% Similarity=0.381 Sum_probs=261.8
Q ss_pred hccCCCHhHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeecCCCCCCCceeEEEeCCCCCccc--
Q 036985 22 AESKTYWGDIQVMKELKNSLDPNSVSPGSCLSSWDFSVDPCDSLFSEKFTCGFRCDVSVSALSRVTELNLDQAGYSGS-- 99 (424)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~c~~~~~~~~~l~~L~L~~~~l~~~-- 99 (424)
+++...+.|++||++||+++. +|. .+++|..+.|||.| .||.|+. ++|+.|+|+++.+.|.
T Consensus 5 ~~~~~~~~~~~all~~k~~~~----~~~-~l~~W~~~~~~C~w-------~gv~C~~-----~~v~~L~L~~~~l~g~~~ 67 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLP----DKN-LLPDWSSNKNPCTF-------DGVTCRD-----DKVTSIDLSSKPLNVGFS 67 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCS----CTT-SSTTCCTTSCGGGS-------TTEEEET-----TEEEEEECTTSCCCEEHH
T ss_pred ccccCCHHHHHHHHHHHhhCC----Ccc-cccCCCCCCCCcCC-------cceEECC-----CcEEEEECCCCCcCCccC
Confidence 445557889999999999993 555 78999877899998 8999983 6899999999888775
Q ss_pred -cC-----------------------CCcCCCCCCcEEEccCCCCCCCcch--hcCCCcCCceEEcccCcccccCCccc-
Q 036985 100 -LS-----------------------TTSWNLPYLETLDLSNNFFSGSIPE--SLSNLTRLIRLGLSRNSFSGEIPASI- 152 (424)
Q Consensus 100 -~~-----------------------~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~i~~~~p~~~- 152 (424)
++ ..++.+++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+..|..+
T Consensus 68 ~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 147 (768)
T 3rgz_A 68 AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147 (768)
T ss_dssp HHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSC
T ss_pred ccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHh
Confidence 33 4677888888888888888877777 78888888888888888887777665
Q ss_pred cCCCcCceEecccCcCCCCchhh---cCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc--cCC
Q 036985 153 GSLSSLEELYLDYNNLEGTIPAS---FNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP--TSL 227 (424)
Q Consensus 153 ~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L 227 (424)
.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+ +..+++|++|++++|.+++.++. +. ++|
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L 225 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCSAL 225 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCCSC
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc-cccCCCC
Confidence 78888888888888888777766 7788888888888888876544 47888888999998888877766 44 888
Q ss_pred cEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEE
Q 036985 228 VQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAV 307 (424)
Q Consensus 228 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L 307 (424)
++|++++|.+++..|..+..+++|++|++++|.+.+.+|.. .+++|++|++++|++++. .+.... ..+++|++|
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~-ip~~~~---~~~~~L~~L 299 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGE-IPDFLS---GACDTLTGL 299 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEES-CCCCSC---TTCTTCSEE
T ss_pred CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCc-cCHHHH---hhcCcCCEE
Confidence 88999888888888888888888888888888887666553 667777777777776642 222210 223555555
Q ss_pred EccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchh-HHhhcC-------------------------CC-----CCC
Q 036985 308 DISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTE-YAIRVA-------------------------VP-----GPG 356 (424)
Q Consensus 308 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~-------------------------l~-----~~~ 356 (424)
++++|.+++.+|..++.+++|++|++++|.+++.+|.. +..+.+ +. ...
T Consensus 300 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred ECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 55555555555555555555555555555555444443 333333 10 000
Q ss_pred -------------CCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCC-CCCCccccccCCCcccccccCccCCC
Q 036985 357 -------------IAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLY-RCPFSFFFCQGARQKSLVECNRFTPV 422 (424)
Q Consensus 357 -------------~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~-~ip~~~~~~~~~l~~l~l~~n~l~~~ 422 (424)
+++|++|++++|++++.+|..+.++ ++|++|++++|.++ .+|..+..+.. |+.++++.|++++.
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGE 457 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTT-CCEEECCSSCCCSC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEECcCCcccCcccHHHhcCCC-CCEEECCCCcccCc
Confidence 2345555555555555555555555 36666666666665 44555544444 66666666666655
Q ss_pred CC
Q 036985 423 IP 424 (424)
Q Consensus 423 ~p 424 (424)
+|
T Consensus 458 ~p 459 (768)
T 3rgz_A 458 IP 459 (768)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.4e-46 Score=382.59 Aligned_cols=382 Identities=19% Similarity=0.251 Sum_probs=285.5
Q ss_pred ccCCCHhHHHHHHHHHhhCCCC-CC---CCCCCCCCCCCCCCCCCCCCCCCcccceeecCCCCCCCceeEEEeCCCCCcc
Q 036985 23 ESKTYWGDIQVMKELKNSLDPN-SV---SPGSCLSSWDFSVDPCDSLFSEKFTCGFRCDVSVSALSRVTELNLDQAGYSG 98 (424)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~~~w~~~~~~C~~~~~~~~~~~~~c~~~~~~~~~l~~L~L~~~~l~~ 98 (424)
+++....|+.||.+++.++++. |. ++.++..+|+.+.++|.|+. ..||.|+.. .+|+.|+|+++.+.|
T Consensus 24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~----~~GV~C~~~----~~V~~L~L~~~~l~g 95 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGA----QPGVSLNSN----GRVTGLSLEGFGASG 95 (636)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTC----CTTEEECTT----CCEEEEECTTSCCEE
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccC----CCCeEEcCC----CCEEEEEecCcccCC
Confidence 3445567999999999998632 21 12234558988888898732 268999862 789999999999999
Q ss_pred ccCCCcCCCCCCcEEEccCCCC----------------------------------------------------------
Q 036985 99 SLSTTSWNLPYLETLDLSNNFF---------------------------------------------------------- 120 (424)
Q Consensus 99 ~~~~~~~~l~~L~~L~L~~n~i---------------------------------------------------------- 120 (424)
.+|+.++++++|++|+|++|.+
T Consensus 96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~ 175 (636)
T 4eco_A 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175 (636)
T ss_dssp EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence 9999999999999999988843
Q ss_pred --------------------CCCcchhcCCCcCCceEEcccCccccc-----------------CCcccc--CCCcCceE
Q 036985 121 --------------------SGSIPESLSNLTRLIRLGLSRNSFSGE-----------------IPASIG--SLSSLEEL 161 (424)
Q Consensus 121 --------------------~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------~p~~~~--~l~~L~~L 161 (424)
++ +|..++++++|++|++++|.+++. +|..++ ++++|++|
T Consensus 176 ~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L 254 (636)
T 4eco_A 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254 (636)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred ccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence 33 778899999999999999999975 899988 99999999
Q ss_pred ecccCcCCCCchhhcCCCCCCcEEEeeccc-ccc-cCCC-CCCC------CCcCEEEccCCcCCCCCCC--ccc--cCCc
Q 036985 162 YLDYNNLEGTIPASFNGLSSLKRLEIQSNK-LTG-EFPE-LGSL------KNLYFLDASDNAISGKLPA--ILP--TSLV 228 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~-l~~l------~~L~~L~l~~n~l~~~~~~--~~~--~~L~ 228 (424)
++++|.+.+.+|..+.++++|++|++++|+ +++ ..|. +..+ ++|++|++++|.++ .+|. .+. ++|+
T Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG 333 (636)
T ss_dssp EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence 999999999999999999999999999998 887 5554 5554 88888888888888 6666 554 7888
Q ss_pred EEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCC-CCEEeccCCcCCCCCCCCCCCCCcccCCCCcEE
Q 036985 229 QISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPS-LQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAV 307 (424)
Q Consensus 229 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L 307 (424)
+|++++|.+++.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++.++..... ..+++|++|
T Consensus 334 ~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~----~~l~~L~~L 407 (636)
T 4eco_A 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDA----KSVSVMSAI 407 (636)
T ss_dssp EEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCT----TCSSCEEEE
T ss_pred EEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhh----cccCccCEE
Confidence 88888888887777 7777788888888888887 67777777777 88888888887754322111 123356666
Q ss_pred EccCCCCCCCChhhhc-------CCCCCCEEeccCCcCcccCchhH-HhhcCC-------------CCC----------C
Q 036985 308 DISNNELQGMLPLFMA-------LMPKLSALSLENNKFTGMIPTEY-AIRVAV-------------PGP----------G 356 (424)
Q Consensus 308 ~Ls~n~l~~~~~~~l~-------~l~~L~~L~L~~N~l~~~~~~~~-~~~~~l-------------~~~----------~ 356 (424)
++++|.+++..|..+. .+++|++|++++|+++ .+|..+ ..+.++ +.. .
T Consensus 408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486 (636)
T ss_dssp ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred ECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence 6666666655555555 4555666666666555 333322 222221 111 1
Q ss_pred CCCccEEEccCCcCccccChhhh--hhccCCcEEEccCCCCCCCCCccccccCCCccccc------ccCccCCCCC
Q 036985 357 IAPFQRLLLGGNYLFGAIPRSLL--ELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLV------ECNRFTPVIP 424 (424)
Q Consensus 357 ~~~L~~L~Ls~N~l~~~~p~~~~--~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l------~~n~l~~~~p 424 (424)
+++|++|+|++|+++ .+|..+. .+ ++|++|++++|+|+.+|..+..+.. |+.+++ ++|++.+.+|
T Consensus 487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l-~~L~~L~Ls~N~l~~ip~~~~~l~~-L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT-KLSDDFRATTL-PYLVGIDLSYNSFSKFPTQPLNSST-LKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp GGGCCEEECCSSCCC-BCCGGGSTTTC-TTCCEEECCSSCCSSCCCGGGGCSS-CCEEECCSCBCTTCCBCCCCCC
T ss_pred cCCccEEECcCCcCC-ccChhhhhccC-CCcCEEECCCCCCCCcChhhhcCCC-CCEEECCCCcccccCcccccCh
Confidence 226999999999998 7888886 77 5999999999999999998888766 999998 5677777766
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-43 Score=369.49 Aligned_cols=373 Identities=19% Similarity=0.230 Sum_probs=260.3
Q ss_pred ccCCCHhHHHHHHHHHhhCCCCCCCCCCCCCCCCCCC-----CC--CCCCCCCCc--c---cceeecCCCCCCCceeEEE
Q 036985 23 ESKTYWGDIQVMKELKNSLDPNSVSPGSCLSSWDFSV-----DP--CDSLFSEKF--T---CGFRCDVSVSALSRVTELN 90 (424)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~-----~~--C~~~~~~~~--~---~~~~c~~~~~~~~~l~~L~ 90 (424)
++.....|+.||.+||++++. | +|..+. +| |.|.....+ | .||.|+. -.+|+.|+
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~----~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~----~~~V~~L~ 329 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDG----K-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN----NGRVTGLS 329 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTG----G-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT----TSCEEEEE
T ss_pred ccccchHHHHHHHHHHHHcCC----C-----CCCcCCCcccccCCccccccccccccccCcCceEecC----CCCEEEEE
Confidence 445667899999999999942 2 565433 56 887332222 3 7999985 27899999
Q ss_pred eCCCCCccccCCCcCCCCCCcEEEc-cCCCCCCC----------------------------------------------
Q 036985 91 LDQAGYSGSLSTTSWNLPYLETLDL-SNNFFSGS---------------------------------------------- 123 (424)
Q Consensus 91 L~~~~l~~~~~~~~~~l~~L~~L~L-~~n~i~~~---------------------------------------------- 123 (424)
|+++.+.|.+|+.++++++|++|+| ++|.+.|.
T Consensus 330 Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~ 409 (876)
T 4ecn_A 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409 (876)
T ss_dssp CTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred CccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence 9999999999999999999999999 66643222
Q ss_pred ------------------------------cchhcCCCcCCceEEcccCcccc-----------------cCCcccc--C
Q 036985 124 ------------------------------IPESLSNLTRLIRLGLSRNSFSG-----------------EIPASIG--S 154 (424)
Q Consensus 124 ------------------------------~~~~~~~l~~L~~L~L~~n~i~~-----------------~~p~~~~--~ 154 (424)
+|..|+++++|++|+|++|.+++ .+|..++ +
T Consensus 410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~ 489 (876)
T 4ecn_A 410 RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489 (876)
T ss_dssp TCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred hCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc
Confidence 77889999999999999999997 3888887 9
Q ss_pred CCcCceEecccCcCCCCchhhcCCCCCCcEEEeeccc-ccc-cCCC--------CCCCCCcCEEEccCCcCCCCCCC--c
Q 036985 155 LSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNK-LTG-EFPE--------LGSLKNLYFLDASDNAISGKLPA--I 222 (424)
Q Consensus 155 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~--------l~~l~~L~~L~l~~n~l~~~~~~--~ 222 (424)
+++|++|+|++|.+.+.+|..|.++++|++|++++|+ +++ .+|. +..+++|++|++++|.++ .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 9999999999999999999999999999999999998 876 4442 345568999999999888 6666 5
Q ss_pred cc--cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCC-CCEEeccCCcCCCCCCCCCCCC---
Q 036985 223 LP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPS-LQQLTLSFNQFTSIQQPAPTND--- 296 (424)
Q Consensus 223 ~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~-L~~L~L~~n~l~~~~~~~~~~~--- 296 (424)
+. ++|+.|++++|.++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++.++.......
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSC
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCC
Confidence 54 78888888888888 666 7888888888888888888 77777888887 8888888888875542111000
Q ss_pred ----------------------CcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCC
Q 036985 297 ----------------------NNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPG 354 (424)
Q Consensus 297 ----------------------~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 354 (424)
.....++|++|++++|.++...+..+..+++|+.|+|++|+++ .+|..+.....-..
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNY 724 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCC
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccc
Confidence 0001235666666666666433333446667777777777666 44443322110000
Q ss_pred CCCCCccEEEccCCcCccccChhhh--hhccCCcEEEccCCCCCCCCCccccccCCCccccccc
Q 036985 355 PGIAPFQRLLLGGNYLFGAIPRSLL--ELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVEC 416 (424)
Q Consensus 355 ~~~~~L~~L~Ls~N~l~~~~p~~~~--~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~ 416 (424)
.++++|++|+|++|+++ .+|..+. .+ ++|+.|++++|+|+.+|..++.+.. |+.|++++
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l-~~L~~L~Ls~N~L~~lp~~l~~L~~-L~~L~Ls~ 785 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTL-PYLSNMDVSYNCFSSFPTQPLNSSQ-LKAFGIRH 785 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGGGSTTTC-TTCCEEECCSSCCSSCCCGGGGCTT-CCEEECCC
T ss_pred cccCCccEEECCCCCCc-cchHHhhhccC-CCcCEEEeCCCCCCccchhhhcCCC-CCEEECCC
Confidence 01224666666666665 4555554 45 3666666666666666655554444 55555543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.9e-44 Score=372.21 Aligned_cols=259 Identities=33% Similarity=0.447 Sum_probs=161.9
Q ss_pred CCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchh-cCCCcCCceEEcccCcccccCCccccCCC-cCce
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPES-LSNLTRLIRLGLSRNSFSGEIPASIGSLS-SLEE 160 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~i~~~~p~~~~~l~-~L~~ 160 (424)
++++++|++++|.+++..|..++++++|++|++++|.+.+.+|.. +.++++|++|++++|.+++.+|..+.+++ +|++
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 378888888888888888888888888888888888887667654 88888888888888888877777776665 6666
Q ss_pred EecccCcCCCCchhhcCC--CCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccC
Q 036985 161 LYLDYNNLEGTIPASFNG--LSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNN 235 (424)
Q Consensus 161 L~L~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n 235 (424)
|++++|.+.+.+|..+.. +++|++|++++|.+++..+. +..+++|++|++++|.+++..+..+. ++|+.|++++|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 666666666555555544 55566666666655554444 55555555555555555555555444 55555555555
Q ss_pred cCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCC
Q 036985 236 NLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQ 315 (424)
Q Consensus 236 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 315 (424)
.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++. .+..+ ..+++|++|++++|+++
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~----~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWI----GRLENLAILKLSNNSFS 527 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGG----GGCTTCCEEECCSSCCE
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc-CChHH----hcCCCCCEEECCCCccc
Confidence 55555555555555555555555555555555555555555555555555542 22222 34455555555555555
Q ss_pred CCChhhhcCCCCCCEEeccCCcCcccCchhH
Q 036985 316 GMLPLFMALMPKLSALSLENNKFTGMIPTEY 346 (424)
Q Consensus 316 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 346 (424)
+.+|..+..+++|++|++++|+++|.+|..+
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred CcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 5555555555555555555555555555444
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-41 Score=335.12 Aligned_cols=327 Identities=20% Similarity=0.189 Sum_probs=278.6
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCc-chhcCCCcCCceEEcccCcccccCCccccCCCcCceEe
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSI-PESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELY 162 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 162 (424)
+++++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 67999999999999988999999999999999999997555 56899999999999999999988899999999999999
Q ss_pred cccCcCCCCchhh--cCCCCCCcEEEeecccccccCCC--CCCCCCcCEEEccCCcCCCCCCCccc----cCCcEEEccc
Q 036985 163 LDYNNLEGTIPAS--FNGLSSLKRLEIQSNKLTGEFPE--LGSLKNLYFLDASDNAISGKLPAILP----TSLVQISMRN 234 (424)
Q Consensus 163 L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~----~~L~~L~l~~ 234 (424)
+++|.+.+..+.. +..+++|++|++++|.+++..+. +..+++|++|++++|.+++..+..+. .+++.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999999766665 89999999999999999988676 78999999999999999988776664 5677777877
Q ss_pred CcCCCCChhh--------hcCCCCCcEEEeeCCcCCCCcCcccc------------------------------------
Q 036985 235 NNLQGTVPES--------LKLLSYLQVVDLSHNKLSGSVPSFVF------------------------------------ 270 (424)
Q Consensus 235 n~l~~~~~~~--------l~~l~~L~~L~Ls~n~l~~~~~~~l~------------------------------------ 270 (424)
|.+.+..+.. +..+++|++|++++|++++..|..+.
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 7777544332 22456777777777777654433221
Q ss_pred ---CCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHH
Q 036985 271 ---SHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYA 347 (424)
Q Consensus 271 ---~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 347 (424)
..++|++|++++|.++++. +..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~-~~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALL-KSVF----SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEEC-TTTT----TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred ccccccCceEEEecCccccccc-hhhc----ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc
Confidence 1257899999999988753 3333 6788999999999999988888999999999999999999988888888
Q ss_pred hhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccCCCCC
Q 036985 348 IRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTPVIP 424 (424)
Q Consensus 348 ~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~~~p 424 (424)
.+.+ |++|++++|++++..|..+..+ ++|++|++++|+|+++|...+....+|+.+++++|++++..|
T Consensus 345 ~l~~--------L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 345 NLDK--------LEVLDLSYNHIRALGDQSFLGL-PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTT--------CCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred Cccc--------CCEEECCCCcccccChhhcccc-ccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7766 9999999999998889999999 599999999999999999887666669999999999998765
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.7e-41 Score=315.80 Aligned_cols=297 Identities=29% Similarity=0.456 Sum_probs=245.2
Q ss_pred CCCHhHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCcccceeecCCCCCCCceeEEEeCCCCCcc--cc
Q 036985 25 KTYWGDIQVMKELKNSLDPNSVSPGSCLSSWDFSVDPCD--SLFSEKFTCGFRCDVSVSALSRVTELNLDQAGYSG--SL 100 (424)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~C~--~~~~~~~~~~~~c~~~~~~~~~l~~L~L~~~~l~~--~~ 100 (424)
.|.+.|.+||.+||++++ +|. .+.+|..+.++|. | .||.|+... ...++++|+++++.+++ .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~----~~~-~l~~W~~~~~~C~~~w-------~gv~C~~~~-~~~~l~~L~L~~~~l~~~~~~ 68 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG----NPT-TLSSWLPTTDCCNRTW-------LGVLCDTDT-QTYRVNNLDLSGLNLPKPYPI 68 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT----CCG-GGTTCCTTSCTTTTCS-------TTEEECCSS-SCCCEEEEEEECCCCSSCEEC
T ss_pred CCCHHHHHHHHHHHHhcC----Ccc-cccCCCCCCCCCcCCC-------cceEeCCCC-CCceEEEEECCCCCccCCccc
Confidence 578899999999999994 333 5788987788998 6 899998521 12689999999999998 88
Q ss_pred CCCcCCCCCCcEEEccC-CCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCC
Q 036985 101 STTSWNLPYLETLDLSN-NFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGL 179 (424)
Q Consensus 101 ~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 179 (424)
|..+.++++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..|.++++|++|++++|.+.+.+|..+..+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 99999999999999995 88988899999999999999999999998899999999999999999999998888899999
Q ss_pred CCCcEEEeecccccccCCC-CCCCC-CcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEee
Q 036985 180 SSLKRLEIQSNKLTGEFPE-LGSLK-NLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLS 257 (424)
Q Consensus 180 ~~L~~L~l~~n~l~~~~~~-l~~l~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 257 (424)
++|++|++++|.+++..+. +..++ +|++|++++|.++ +..|..+..++ |++|+++
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~----------------------~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT----------------------GKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE----------------------EECCGGGGGCC-CSEEECC
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee----------------------ccCChHHhCCc-ccEEECc
Confidence 9999999999988866665 66665 6666666655544 45556666665 8888888
Q ss_pred CCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCc
Q 036985 258 HNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNK 337 (424)
Q Consensus 258 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~ 337 (424)
+|.+++..|..+..+++|++|++++|.+++.... . ..+++|++|++++|++++.+|..+..+++|++|++++|+
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~----~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--V----GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--C----CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--c----cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 8888877777788888888888888888763222 2 456889999999999998889999999999999999999
Q ss_pred CcccCchhHHhhcCCCCCCCCCccEEEccCCc-Ccc
Q 036985 338 FTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNY-LFG 372 (424)
Q Consensus 338 l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~-l~~ 372 (424)
++|.+|.. ..+.+ |+.+++++|. +.|
T Consensus 280 l~~~ip~~-~~l~~--------L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 280 LCGEIPQG-GNLQR--------FDVSAYANNKCLCG 306 (313)
T ss_dssp EEEECCCS-TTGGG--------SCGGGTCSSSEEES
T ss_pred ccccCCCC-ccccc--------cChHHhcCCCCccC
Confidence 99998875 55555 9999999997 655
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.7e-40 Score=335.51 Aligned_cols=323 Identities=19% Similarity=0.252 Sum_probs=283.2
Q ss_pred CCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCC-CCC-CcchhcCCC------cCCceEEcccCcccccCCc--c
Q 036985 82 ALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNF-FSG-SIPESLSNL------TRLIRLGLSRNSFSGEIPA--S 151 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~i~~~~p~--~ 151 (424)
++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++++ ++|++|++++|.++ .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 68899999999999999999999999999999999998 998 789888876 99999999999999 8898 8
Q ss_pred ccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCC-cCEEEccCCcCCCCCCCccc----cC
Q 036985 152 IGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKN-LYFLDASDNAISGKLPAILP----TS 226 (424)
Q Consensus 152 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~----~~ 226 (424)
++++++|++|++++|.+.|.+| .+..+++|++|++++|.++..+..+..+++ |++|++++|.++ .+|..+. ++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 9999999999999999998888 999999999999999999955555999999 999999999999 6666655 37
Q ss_pred CcEEEcccCcCCCCChhhhc-------CCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCC--C
Q 036985 227 LVQISMRNNNLQGTVPESLK-------LLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTND--N 297 (424)
Q Consensus 227 L~~L~l~~n~l~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~--~ 297 (424)
|+.|++++|.+++..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|+++.++...+... .
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 99999999999999888888 78899999999999995444456678999999999999997554332100 0
Q ss_pred cccCCCCcEEEccCCCCCCCChhhhc--CCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEc------cCCc
Q 036985 298 NIFSSQLIAVDISNNELQGMLPLFMA--LMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLL------GGNY 369 (424)
Q Consensus 298 ~~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~L------s~N~ 369 (424)
...+++|++|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+.+ |++|+| ++|+
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~--------L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST--------LKGFGIRNQRDAQGNR 553 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS--------CCEEECCSCBCTTCCB
T ss_pred ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC--------CCEEECCCCcccccCc
Confidence 012238999999999999 6777776 99999999999999997 8988888777 999999 5688
Q ss_pred CccccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccCC
Q 036985 370 LFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTP 421 (424)
Q Consensus 370 l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~ 421 (424)
+.+.+|..+.++ ++|++|++++|+|+.+|..++ ..|+.+++++|++..
T Consensus 554 l~~~~p~~l~~l-~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 554 TLREWPEGITLC-PSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCCCCCTTGGGC-SSCCEEECCSSCCCBCCSCCC---TTCCEEECCSCTTCE
T ss_pred ccccChHHHhcC-CCCCEEECCCCcCCccCHhHh---CcCCEEECcCCCCcc
Confidence 899999999999 599999999999999999866 459999999998763
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=312.53 Aligned_cols=299 Identities=20% Similarity=0.211 Sum_probs=167.1
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
++++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 35566666666666555555666666666666666666555556666666666666666666444444556666666666
Q ss_pred ccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCC
Q 036985 164 DYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGT 240 (424)
Q Consensus 164 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~ 240 (424)
++|.+.+..+..|.++++|++|++++|.+.+..+. +..+++|++|++++|.+++..+..+. ++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 66666655555566666666666666666555443 55666666666666655544333332 5555555555555555
Q ss_pred ChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChh
Q 036985 241 VPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPL 320 (424)
Q Consensus 241 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 320 (424)
.+..+..+++|++|++++|...+.++.......+|++|++++|++++++...+ ..+++|++|++++|.+++..+.
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV-----RHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH-----TTCTTCCEEECCSSCCCEECTT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh-----cCccccCeeECCCCcCCccChh
Confidence 55555555555555555555554444444444455555555555554321111 3345555555555555555555
Q ss_pred hhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCC
Q 036985 321 FMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLY 396 (424)
Q Consensus 321 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~ 396 (424)
.+..+++|+.|+|++|++++..|..+..+.+ |++|+|++|++++..+..|..+ ++|++|++++|+++
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--------L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNY--------LRVLNVSGNQLTTLEESVFHSV-GNLETLILDSNPLA 333 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTT--------CCEEECCSSCCSCCCGGGBSCG-GGCCEEECCSSCEE
T ss_pred hccccccCCEEECCCCccceECHHHhcCccc--------CCEEECCCCcCceeCHhHcCCC-cccCEEEccCCCcc
Confidence 5555555555555555555555555544444 5555555555554444444445 35555555555554
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-38 Score=325.47 Aligned_cols=336 Identities=18% Similarity=0.142 Sum_probs=215.2
Q ss_pred CCCCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCc
Q 036985 80 VSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLE 159 (424)
Q Consensus 80 ~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 159 (424)
+.+++++++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|+
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 34567777777777777766666777777777777777777766677777777777777777777755556677777777
Q ss_pred eEecccCcCCC-CchhhcCCCCCCcEEEeecccccccCCC-C--------------------------------------
Q 036985 160 ELYLDYNNLEG-TIPASFNGLSSLKRLEIQSNKLTGEFPE-L-------------------------------------- 199 (424)
Q Consensus 160 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l-------------------------------------- 199 (424)
+|++++|.+.+ .+|..++++++|++|++++|.+++..+. +
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L 211 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeec
Confidence 77777777764 4567777777777777777765543221 1
Q ss_pred --------------------------------------------------------------------------------
Q 036985 200 -------------------------------------------------------------------------------- 199 (424)
Q Consensus 200 -------------------------------------------------------------------------------- 199 (424)
T Consensus 212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 291 (606)
T 3vq2_A 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291 (606)
T ss_dssp ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEE
T ss_pred cCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEE
Confidence
Q ss_pred ------------CCCCCcCEEEccCCcCCCCCCCc----------------------cccCCcEEEcccCcCCCC--Chh
Q 036985 200 ------------GSLKNLYFLDASDNAISGKLPAI----------------------LPTSLVQISMRNNNLQGT--VPE 243 (424)
Q Consensus 200 ------------~~l~~L~~L~l~~n~l~~~~~~~----------------------~~~~L~~L~l~~n~l~~~--~~~ 243 (424)
..+++|+.|++++|.+ +.++.. ..++|++|++++|.+++. .+.
T Consensus 292 l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 370 (606)
T 3vq2_A 292 LAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSY 370 (606)
T ss_dssp EESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCH
T ss_pred ecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhh
Confidence 1111233333333333 111110 015677777777777654 366
Q ss_pred hhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhc
Q 036985 244 SLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMA 323 (424)
Q Consensus 244 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 323 (424)
.+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+......+ ..+++|++|++++|.+++..|..+.
T Consensus 371 ~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF----LSLEKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT----TTCTTCCEEECTTSCCEECCTTTTT
T ss_pred hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh----hccccCCEEECcCCCCCccchhhhc
Confidence 77778888888888887763 556677777777777777777664332222 3445555555555555554555555
Q ss_pred CCCCCCEEeccCCcCccc-CchhHHhhcCCC----------------CCCCCCccEEEccCCcCccccChhhhhhccCCc
Q 036985 324 LMPKLSALSLENNKFTGM-IPTEYAIRVAVP----------------GPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSA 386 (424)
Q Consensus 324 ~l~~L~~L~L~~N~l~~~-~~~~~~~~~~l~----------------~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~ 386 (424)
.+++|++|++++|.+++. +|..+..+.++. ...+++|++|++++|++++..|..+..+ ++|+
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~ 524 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL-YSLS 524 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC-TTCC
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC-CcCC
Confidence 555555555555555442 333333333210 0234458888888888888888888888 4888
Q ss_pred EEEccCCCCCCCCCccccccCCCcccccccCccCCC
Q 036985 387 NVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTPV 422 (424)
Q Consensus 387 ~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~~ 422 (424)
+|++++|+|+.+|..+.....+++.+++++|++...
T Consensus 525 ~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp EEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred EEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 888888888888888777665688888888888753
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-38 Score=321.86 Aligned_cols=330 Identities=22% Similarity=0.139 Sum_probs=256.8
Q ss_pred CCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEe
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELY 162 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 162 (424)
.+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 36799999999999988888999999999999999999987788999999999999999999988899999999999999
Q ss_pred cccCcCCCCchhhcCCCCCCcEEEeecccccc-cCCC-CCCCCCcCEEEccCCcCCCCCCCccc----------------
Q 036985 163 LDYNNLEGTIPASFNGLSSLKRLEIQSNKLTG-EFPE-LGSLKNLYFLDASDNAISGKLPAILP---------------- 224 (424)
Q Consensus 163 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~---------------- 224 (424)
+++|.+.+..+..++++++|++|++++|.+.+ ..|. +.++++|++|++++|.+++..+..+.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999998777889999999999999999986 3354 99999999999999988765544322
Q ss_pred -------------cCCcEEEcccCcCC-----------------------------------------------------
Q 036985 225 -------------TSLVQISMRNNNLQ----------------------------------------------------- 238 (424)
Q Consensus 225 -------------~~L~~L~l~~n~l~----------------------------------------------------- 238 (424)
.+|+.|++++|.+.
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 12333333333221
Q ss_pred -------------------------------------------------CCCh--------------------hhhcCCC
Q 036985 239 -------------------------------------------------GTVP--------------------ESLKLLS 249 (424)
Q Consensus 239 -------------------------------------------------~~~~--------------------~~l~~l~ 249 (424)
+.+| ..+..++
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~ 350 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP 350 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCT
T ss_pred cccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCC
Confidence 1111 0123455
Q ss_pred CCcEEEeeCCcCCCC--cCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCCh-hhhcCCC
Q 036985 250 YLQVVDLSHNKLSGS--VPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLP-LFMALMP 326 (424)
Q Consensus 250 ~L~~L~Ls~n~l~~~--~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~ 326 (424)
+|++|++++|.+++. .+..+..+++|++|++++|.+++++ ..+ ..+++|++|++++|.+.+..+ ..+..++
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--ANF----MGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC--CCC----TTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch--hhc----cCCCCCCeeECCCCccCCccChhhhhccc
Confidence 667777777777654 3778889999999999999998865 233 678999999999999998877 6889999
Q ss_pred CCCEEeccCCcCcccCchhHHhhcCCC-----------------CCCCCCccEEEccCCcCccccChhhhhhccCCcEEE
Q 036985 327 KLSALSLENNKFTGMIPTEYAIRVAVP-----------------GPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVR 389 (424)
Q Consensus 327 ~L~~L~L~~N~l~~~~~~~~~~~~~l~-----------------~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~ 389 (424)
+|++|++++|.+++..|..+..+.++. ...+++|++|++++|++++..|..+..+ ++|++|+
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~ 503 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL-HRLQLLN 503 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEE
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc-ccCCEEE
Confidence 999999999999998888887766521 1345667777777777766666666666 3777777
Q ss_pred ccCCCCCCC-CCccccccCCCcccccccCccC
Q 036985 390 LADNCLYRC-PFSFFFCQGARQKSLVECNRFT 420 (424)
Q Consensus 390 l~~N~l~~i-p~~~~~~~~~l~~l~l~~n~l~ 420 (424)
+++|+++.+ |..+..+.. |+.+++++|+++
T Consensus 504 Ls~N~l~~~~~~~~~~l~~-L~~L~l~~N~l~ 534 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYS-LSTLDCSFNRIE 534 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTT-CCEEECTTSCCC
T ss_pred CCCCcCCCcCHHHccCCCc-CCEEECCCCcCc
Confidence 777777665 333333333 777777777766
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.4e-38 Score=319.86 Aligned_cols=326 Identities=19% Similarity=0.137 Sum_probs=219.6
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
.++++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 46888888888888877888888888888888888888777888888888888888888888777888888888888888
Q ss_pred ccCcCCCCchhhcCCCCCCcEEEeecccccccC-CCCCCCCCcCEEEccCCcCCCCCCCccc--cCCc--EEEcccCcCC
Q 036985 164 DYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEF-PELGSLKNLYFLDASDNAISGKLPAILP--TSLV--QISMRNNNLQ 238 (424)
Q Consensus 164 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~--~L~l~~n~l~ 238 (424)
++|.+++..+..+.++++|++|++++|.+++.. +.+..+++|++|++++|.+++..+..+. ++++ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 888888766777888888888888888887643 4455578888888888877655443333 4444 4555555444
Q ss_pred C---------------------------------------------------------------------------CChh
Q 036985 239 G---------------------------------------------------------------------------TVPE 243 (424)
Q Consensus 239 ~---------------------------------------------------------------------------~~~~ 243 (424)
+ ..+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 3 3334
Q ss_pred hhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChh-hh
Q 036985 244 SLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPL-FM 322 (424)
Q Consensus 244 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l 322 (424)
.+..+++|++|++++|.++ .+|..+..+++|++|++++|+++++... .+ ..+++|++|++++|.+.+.++. .+
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~-~~----~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI-SA----SNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG-CG----GGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchh-hh----hccCcCCEEECCCCCcccccchhhh
Confidence 4445555555555555555 4444455555555555555555543221 11 3445555555555555533332 35
Q ss_pred cCCCCCCEEeccCCcCcccC--chhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCC-C
Q 036985 323 ALMPKLSALSLENNKFTGMI--PTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRC-P 399 (424)
Q Consensus 323 ~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~i-p 399 (424)
..+++|++|++++|.+++.. +..+..+ ++|++|++++|++++..|..+..+ ++|++|++++|.++.. |
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--------~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNL--------SHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTC--------TTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCCEECCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccC--------CCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCcCCCccc
Confidence 55556666666666555443 3344443 448888888888887778888888 4888888888888754 3
Q ss_pred CccccccCCCcccccccCccCCCCC
Q 036985 400 FSFFFCQGARQKSLVECNRFTPVIP 424 (424)
Q Consensus 400 ~~~~~~~~~l~~l~l~~n~l~~~~p 424 (424)
...+....+|+.+++++|++.+..|
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred chhhhCcccCCEEECCCCccCCcCH
Confidence 4433333448888888888877644
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.5e-38 Score=329.54 Aligned_cols=323 Identities=21% Similarity=0.275 Sum_probs=248.4
Q ss_pred CCCCCceeEEEeCCCCCcc-----------------ccCCCcC--CCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcc
Q 036985 80 VSALSRVTELNLDQAGYSG-----------------SLSTTSW--NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLS 140 (424)
Q Consensus 80 ~~~~~~l~~L~L~~~~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 140 (424)
++++++|+.|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|.++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 4567889999999999988 3787777 89999999999998888888889999999999999
Q ss_pred cCc-ccc-cCCccccCCC-------cCceEecccCcCCCCchh--hcCCCCCCcEEEeecccccccCCCCCCCCCcCEEE
Q 036985 141 RNS-FSG-EIPASIGSLS-------SLEELYLDYNNLEGTIPA--SFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLD 209 (424)
Q Consensus 141 ~n~-i~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 209 (424)
+|+ +++ .+|..+++++ +|++|++++|.+. .+|. .+.++++|++|++++|.++ .+|.+..+++|+.|+
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~ 601 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLK 601 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEE
Confidence 997 887 6776655544 8888888888888 7777 7888888888888888887 445777777888888
Q ss_pred ccCCcCCCCCCCccc--cC-CcEEEcccCcCCCCChhhhcCCC-------------------------------CCcEEE
Q 036985 210 ASDNAISGKLPAILP--TS-LVQISMRNNNLQGTVPESLKLLS-------------------------------YLQVVD 255 (424)
Q Consensus 210 l~~n~l~~~~~~~~~--~~-L~~L~l~~n~l~~~~~~~l~~l~-------------------------------~L~~L~ 255 (424)
+++|.++ .+|..+. ++ |+.|++++|.++ .+|..+...+ +|+.|+
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 8888777 5554444 55 777777777766 4444443332 455555
Q ss_pred eeCCcCCCCcCccc-cCCCCCCEEeccCCcCCCCCCCCCCCC--CcccCCCCcEEEccCCCCCCCChhhhc--CCCCCCE
Q 036985 256 LSHNKLSGSVPSFV-FSHPSLQQLTLSFNQFTSIQQPAPTND--NNIFSSQLIAVDISNNELQGMLPLFMA--LMPKLSA 330 (424)
Q Consensus 256 Ls~n~l~~~~~~~l-~~~~~L~~L~L~~n~l~~~~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~ 330 (424)
+++|.++ .+|..+ ..+++|+.|++++|+++.++...+... ....+++|++|+|++|+++ .+|..+. .+++|+.
T Consensus 680 Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 680 LSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSN 757 (876)
T ss_dssp CCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCE
T ss_pred ccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCE
Confidence 5555555 333333 366788888888888886544322100 0022348999999999999 6677776 8999999
Q ss_pred EeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccC------CcCccccChhhhhhccCCcEEEccCCCCCCCCCcccc
Q 036985 331 LSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGG------NYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFF 404 (424)
Q Consensus 331 L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~------N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~ 404 (424)
|+|++|++++ +|..+..+.+ |+.|+|++ |++.+.+|..+.++ ++|++|++++|+|+.+|..++
T Consensus 758 L~Ls~N~L~~-lp~~l~~L~~--------L~~L~Ls~N~~ls~N~l~~~ip~~l~~L-~~L~~L~Ls~N~L~~Ip~~l~- 826 (876)
T 4ecn_A 758 MDVSYNCFSS-FPTQPLNSSQ--------LKAFGIRHQRDAEGNRILRQWPTGITTC-PSLIQLQIGSNDIRKVDEKLT- 826 (876)
T ss_dssp EECCSSCCSS-CCCGGGGCTT--------CCEEECCCCBCTTCCBCCCCCCTTGGGC-SSCCEEECCSSCCCBCCSCCC-
T ss_pred EEeCCCCCCc-cchhhhcCCC--------CCEEECCCCCCcccccccccChHHHhcC-CCCCEEECCCCCCCccCHhhc-
Confidence 9999999997 7888887777 99999976 88889999999999 599999999999999999866
Q ss_pred ccCCCcccccccCccCC
Q 036985 405 CQGARQKSLVECNRFTP 421 (424)
Q Consensus 405 ~~~~l~~l~l~~n~l~~ 421 (424)
.+|+.+++++|++..
T Consensus 827 --~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 827 --PQLYILDIADNPNIS 841 (876)
T ss_dssp --SSSCEEECCSCTTCE
T ss_pred --CCCCEEECCCCCCCc
Confidence 359999999999864
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8e-38 Score=319.60 Aligned_cols=328 Identities=20% Similarity=0.124 Sum_probs=254.6
Q ss_pred CCCCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCc
Q 036985 80 VSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLE 159 (424)
Q Consensus 80 ~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 159 (424)
+.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|+
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence 45677788888888877777777777788888888888877766677777777777777777777765566677777777
Q ss_pred eEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCc---------------------------------
Q 036985 160 ELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNL--------------------------------- 205 (424)
Q Consensus 160 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L--------------------------------- 205 (424)
+|++++|.+.+.....+..+++|++|++++|.+++..+. +..+++|
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence 777777777654333444466677777666666544333 3344444
Q ss_pred --------------------------------------------CEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCC
Q 036985 206 --------------------------------------------YFLDASDNAISGKLPAILP--TSLVQISMRNNNLQG 239 (424)
Q Consensus 206 --------------------------------------------~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~ 239 (424)
+.|++++|.+++..+..+. ++|++|++++|.++
T Consensus 213 ~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~- 291 (606)
T 3t6q_A 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291 (606)
T ss_dssp SCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-
T ss_pred hhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-
Confidence 4445555555544444454 78999999999998
Q ss_pred CChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCC-
Q 036985 240 TVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGML- 318 (424)
Q Consensus 240 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~- 318 (424)
.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+........+ ..+++|++|++++|.+++..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL----ENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT----TTCTTCCEEECCSSCCCEEEE
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh----hccCcCCEEECCCCccccccC
Confidence 6788899999999999999999988888899999999999999998852223223 67899999999999999765
Q ss_pred -hhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChh-hhhhccCCcEEEccCCCCC
Q 036985 319 -PLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRS-LLELQPGSANVRLADNCLY 396 (424)
Q Consensus 319 -~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~-~~~l~~~L~~L~l~~N~l~ 396 (424)
+..+..+++|++|++++|.+.+..|..+..+.+ |++|++++|++++..|.. +..+ ++|++|++++|.++
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--------L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ--------LELLDLAFTRLKVKDAQSPFQNL-HLLKVLNLSHSLLD 438 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT--------CSEEECTTCCEECCTTCCTTTTC-TTCCEEECTTCCCB
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc--------CCeEECCCCcCCCcccchhhhCc-ccCCEEECCCCccC
Confidence 778999999999999999999988888887776 999999999998876654 7788 59999999999999
Q ss_pred CCCCccccccCCCcccccccCccCC
Q 036985 397 RCPFSFFFCQGARQKSLVECNRFTP 421 (424)
Q Consensus 397 ~ip~~~~~~~~~l~~l~l~~n~l~~ 421 (424)
.++...+....+|+.+++++|++.+
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CcCHHHHhCCCCCCEEECCCCCCCc
Confidence 7765554444559999999999876
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=317.82 Aligned_cols=160 Identities=23% Similarity=0.202 Sum_probs=98.0
Q ss_pred CCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCC-CCCCCCCcccCCCCcEEEccCCCCCCCChh-hhcC
Q 036985 247 LLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQ-PAPTNDNNIFSSQLIAVDISNNELQGMLPL-FMAL 324 (424)
Q Consensus 247 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~ 324 (424)
.+++|++|++++|++++..|..+..+++|++|++++|++++++. +..+ ..+++|++|++++|.+++.+|. .+..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~----~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT----TQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH----TTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH----hhCCCCCEEECCCCcCCcccccchhcc
Confidence 44555555555555555455555555555555555555554211 1111 3345555555555555543333 2445
Q ss_pred CCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCcccc
Q 036985 325 MPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFF 404 (424)
Q Consensus 325 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~ 404 (424)
+++|+.|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+ ++|++|++++|+|+.+|...+.
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~----------~~L~~L~Ls~N~l~-~ip~~~~~l-~~L~~L~L~~N~l~~l~~~~~~ 465 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP----------PRIKVLDLHSNKIK-SIPKQVVKL-EALQELNVASNQLKSVPDGIFD 465 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC----------TTCCEEECCSSCCC-CCCGGGGGC-TTCCEEECCSSCCCCCCTTTTT
T ss_pred CccCCEEECcCCCCCcchhhhhc----------ccCCEEECCCCccc-ccchhhhcC-CCCCEEECCCCcCCccCHHHhc
Confidence 55555555555555544443322 34888999999887 788888888 5899999999999999887444
Q ss_pred ccCCCcccccccCccCCC
Q 036985 405 CQGARQKSLVECNRFTPV 422 (424)
Q Consensus 405 ~~~~l~~l~l~~n~l~~~ 422 (424)
...+|+.+++++|+++..
T Consensus 466 ~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TCTTCCEEECCSSCBCCC
T ss_pred cCCcccEEECcCCCCccc
Confidence 444588999999988753
No 15
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.3e-38 Score=316.96 Aligned_cols=318 Identities=21% Similarity=0.182 Sum_probs=238.2
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 67888999999888877778888899999999999888777888888899999999999888 56655 7888999999
Q ss_pred ccCcCCC-CchhhcCCCCCCcEEEeecccccccCCCCCCCCCc--CEEEccCCcC--CCCCCCccc--------------
Q 036985 164 DYNNLEG-TIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNL--YFLDASDNAI--SGKLPAILP-------------- 224 (424)
Q Consensus 164 ~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~~~-------------- 224 (424)
++|.+.+ ..|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..+..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 206 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCc
Confidence 9988886 3457888888899999988888752 23444444 7777777776 443332221
Q ss_pred ---------------------------------------------------------------------cCCcEEEcccC
Q 036985 225 ---------------------------------------------------------------------TSLVQISMRNN 235 (424)
Q Consensus 225 ---------------------------------------------------------------------~~L~~L~l~~n 235 (424)
.+|++|++++|
T Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 286 (562)
T 3a79_B 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286 (562)
T ss_dssp SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred cchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEecc
Confidence 15666666666
Q ss_pred cCCCCChhhh-----------------------------------------------------cCCCCCcEEEeeCCcCC
Q 036985 236 NLQGTVPESL-----------------------------------------------------KLLSYLQVVDLSHNKLS 262 (424)
Q Consensus 236 ~l~~~~~~~l-----------------------------------------------------~~l~~L~~L~Ls~n~l~ 262 (424)
.+++.+|..+ ..+++|++|++++|+++
T Consensus 287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~ 366 (562)
T 3a79_B 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366 (562)
T ss_dssp EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC
T ss_pred EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccc
Confidence 6665554433 56677888888888888
Q ss_pred CCcCccccCCCCCCEEeccCCcCCCCCC-CCCCCCCcccCCCCcEEEccCCCCCCCCh-hhhcCCCCCCEEeccCCcCcc
Q 036985 263 GSVPSFVFSHPSLQQLTLSFNQFTSIQQ-PAPTNDNNIFSSQLIAVDISNNELQGMLP-LFMALMPKLSALSLENNKFTG 340 (424)
Q Consensus 263 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~ 340 (424)
+..|..+..+++|++|++++|++++++. +..+ ..+++|++|++++|.+++.+| ..+..+++|++|++++|++++
T Consensus 367 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT----KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT----TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred cchhhhhcccCCCCEEECCCCCcCCcccchhhh----cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 7777777788888888888888876532 1122 456788888888888876344 346777888888888888876
Q ss_pred cCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccC
Q 036985 341 MIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFT 420 (424)
Q Consensus 341 ~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~ 420 (424)
.+|..+. ++|++|++++|+++ .+|..+..+ ++|++|++++|+|+.+|...+....+|+.+++++|++.
T Consensus 443 ~~~~~l~----------~~L~~L~L~~N~l~-~ip~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 443 SVFRCLP----------PKVKVLDLHNNRIM-SIPKDVTHL-QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp GGGSSCC----------TTCSEEECCSSCCC-CCCTTTTSS-CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred chhhhhc----------CcCCEEECCCCcCc-ccChhhcCC-CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 6554432 24999999999997 688888888 59999999999999999884444445999999999987
Q ss_pred CC
Q 036985 421 PV 422 (424)
Q Consensus 421 ~~ 422 (424)
+.
T Consensus 511 c~ 512 (562)
T 3a79_B 511 CT 512 (562)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-38 Score=317.81 Aligned_cols=330 Identities=21% Similarity=0.220 Sum_probs=228.4
Q ss_pred CCCCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCc
Q 036985 80 VSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLE 159 (424)
Q Consensus 80 ~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 159 (424)
+.+++++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..++++++|+
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 34567777777777777766666677777777777777777765566777777777777777777754444577777777
Q ss_pred eEecccCcCCC-CchhhcCCCCCCcEEEeecccccccCCC-CCC------------------------------------
Q 036985 160 ELYLDYNNLEG-TIPASFNGLSSLKRLEIQSNKLTGEFPE-LGS------------------------------------ 201 (424)
Q Consensus 160 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~------------------------------------ 201 (424)
+|++++|.+.+ .+|..|.++++|++|++++|.+++..+. +..
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l 207 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEec
Confidence 77777777765 3567777777777777777765533221 111
Q ss_pred -------------------------------------------------------------------------CCCcCEE
Q 036985 202 -------------------------------------------------------------------------LKNLYFL 208 (424)
Q Consensus 202 -------------------------------------------------------------------------l~~L~~L 208 (424)
+++|+.|
T Consensus 208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L 287 (570)
T 2z63_A 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287 (570)
T ss_dssp ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEE
T ss_pred ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEE
Confidence 2333334
Q ss_pred EccCCcCCCCCCCc--------------------------------------------cccCCcEEEcccCcCCCCC--h
Q 036985 209 DASDNAISGKLPAI--------------------------------------------LPTSLVQISMRNNNLQGTV--P 242 (424)
Q Consensus 209 ~l~~n~l~~~~~~~--------------------------------------------~~~~L~~L~l~~n~l~~~~--~ 242 (424)
++++|.+.+ ++.. ..++|++|++++|.+++.. +
T Consensus 288 ~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 366 (570)
T 2z63_A 288 SLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366 (570)
T ss_dssp EEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEE
T ss_pred EecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccc
Confidence 433333321 1110 0134444444444444322 4
Q ss_pred hhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhh
Q 036985 243 ESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFM 322 (424)
Q Consensus 243 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l 322 (424)
..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+++....... ..+++|++|++++|.+.+..|..+
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~ 441 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVF----LSLRNLIYLDISHTHTRVAFNGIF 441 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTT----TTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhh----hcCCCCCEEeCcCCcccccchhhh
Confidence 4555666666666666666533 33366777777777777777764332333 567889999999998888888888
Q ss_pred cCCCCCCEEeccCCcCc-ccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCc
Q 036985 323 ALMPKLSALSLENNKFT-GMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFS 401 (424)
Q Consensus 323 ~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~ 401 (424)
..+++|++|++++|.++ +.+|..+..+.+ |++|++++|++++..|..+..+ ++|++|++++|+++.+|..
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~--------L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRN--------LTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTT--------CCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCSCCCTT
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccC--------CCEEECCCCccccCChhhhhcc-cCCCEEeCCCCcCCCCCHH
Confidence 88999999999999887 567777776666 9999999999998889999999 5999999999999999877
Q ss_pred cccccCCCcccccccCccCCCCC
Q 036985 402 FFFCQGARQKSLVECNRFTPVIP 424 (424)
Q Consensus 402 ~~~~~~~l~~l~l~~n~l~~~~p 424 (424)
.+....+|+.+++++|++++..|
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhhcccCCcEEEecCCcccCCCc
Confidence 65555559999999999998765
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.8e-38 Score=310.54 Aligned_cols=318 Identities=21% Similarity=0.206 Sum_probs=280.4
Q ss_pred eEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccC
Q 036985 87 TELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYN 166 (424)
Q Consensus 87 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 166 (424)
+.++.+++.++. +|..+ .+.+++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 456667777763 45444 368999999999999877889999999999999999999888999999999999999999
Q ss_pred cCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCChh
Q 036985 167 NLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTVPE 243 (424)
Q Consensus 167 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~~~ 243 (424)
.+....+..|.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+..+. ++|++|++++|.+++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 99977667789999999999999999988776 99999999999999999988777776 8999999999999988888
Q ss_pred hhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhc
Q 036985 244 SLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMA 323 (424)
Q Consensus 244 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 323 (424)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+. .+... ....+|++|++++|.+++..+..+.
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT-MTPNC----LYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE-ECTTT----TTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc-cCccc----ccCccccEEECcCCcccccCHHHhc
Confidence 899999999999999999987778899999999999999887653 22222 2345899999999999977777899
Q ss_pred CCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCccc
Q 036985 324 LMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFF 403 (424)
Q Consensus 324 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~ 403 (424)
.+++|+.|+|++|.+++..+..+..+.+ |++|+|++|++++..|..|..+ ++|++|++++|.|+.+|...+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--------L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLR--------LQEIQLVGGQLAVVEPYAFRGL-NYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTT--------CCEEECCSSCCSEECTTTBTTC-TTCCEEECCSSCCSCCCGGGB
T ss_pred CccccCeeECCCCcCCccChhhcccccc--------CCEEECCCCccceECHHHhcCc-ccCCEEECCCCcCceeCHhHc
Confidence 9999999999999999887777777666 9999999999999889999999 599999999999999999887
Q ss_pred cccCCCcccccccCccCC
Q 036985 404 FCQGARQKSLVECNRFTP 421 (424)
Q Consensus 404 ~~~~~l~~l~l~~n~l~~ 421 (424)
....+|+.+++++|++..
T Consensus 317 ~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 317 HSVGNLETLILDSNPLAC 334 (477)
T ss_dssp SCGGGCCEEECCSSCEEC
T ss_pred CCCcccCEEEccCCCccC
Confidence 766669999999999863
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-37 Score=307.31 Aligned_cols=306 Identities=24% Similarity=0.259 Sum_probs=260.9
Q ss_pred CCCCCceeEEEeCCCCCcccc-CCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCcc--ccCCC
Q 036985 80 VSALSRVTELNLDQAGYSGSL-STTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPAS--IGSLS 156 (424)
Q Consensus 80 ~~~~~~l~~L~L~~~~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~--~~~l~ 156 (424)
+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|.. +..++
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 467899999999999998655 567899999999999999999888999999999999999999998755554 89999
Q ss_pred cCceEecccCcCCCCchhh-cCCCCCCcEEEeecccccccCCC-CCCC--CCcCEEEccCCcCCCCCCCccc--------
Q 036985 157 SLEELYLDYNNLEGTIPAS-FNGLSSLKRLEIQSNKLTGEFPE-LGSL--KNLYFLDASDNAISGKLPAILP-------- 224 (424)
Q Consensus 157 ~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~-l~~l--~~L~~L~l~~n~l~~~~~~~~~-------- 224 (424)
+|++|++++|.+.+..|.. +.++++|++|++++|.+++..+. +..+ .+|+.|++++|.+.+..+..+.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 209 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence 9999999999999887776 88999999999999999987765 5444 6788888888888765544322
Q ss_pred --cCCcEEEcccCcCCCCChhhhcC---------------------------------------CCCCcEEEeeCCcCCC
Q 036985 225 --TSLVQISMRNNNLQGTVPESLKL---------------------------------------LSYLQVVDLSHNKLSG 263 (424)
Q Consensus 225 --~~L~~L~l~~n~l~~~~~~~l~~---------------------------------------l~~L~~L~Ls~n~l~~ 263 (424)
++|++|++++|.+++..+..+.. .++|++|++++|.+.+
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence 56888888888776544443321 2689999999999998
Q ss_pred CcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCc
Q 036985 264 SVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIP 343 (424)
Q Consensus 264 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 343 (424)
..|..+..+++|++|++++|+++++.... + ..+++|++|++++|.+++..+..+..+++|++|++++|++++..|
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNA-F----WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTT-T----TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred cchhhcccCCCCCEEECCCCcccccChhH-h----cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence 88999999999999999999999854433 3 578999999999999998889999999999999999999999889
Q ss_pred hhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCC-CCC
Q 036985 344 TEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLY-RCP 399 (424)
Q Consensus 344 ~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~-~ip 399 (424)
..+..+.+ |++|++++|++++..+..+..+ ++|++|++++|+++ .+|
T Consensus 365 ~~~~~l~~--------L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 365 QSFLGLPN--------LKELALDTNQLKSVPDGIFDRL-TSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTCTT--------CCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSSCBCCCTT
T ss_pred hhcccccc--------ccEEECCCCccccCCHhHhccC-CcccEEEccCCCcccCCC
Confidence 88887777 9999999999997666677888 59999999999997 566
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-37 Score=314.10 Aligned_cols=140 Identities=21% Similarity=0.161 Sum_probs=115.4
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
+++++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57899999999998887888889999999999999998777788889999999999999998776667888999999999
Q ss_pred ccCcCCC-CchhhcCCCCCCcEEEeecccc-cccCCC-CCCCCCcCEEEccCCcCCCCCCCcc
Q 036985 164 DYNNLEG-TIPASFNGLSSLKRLEIQSNKL-TGEFPE-LGSLKNLYFLDASDNAISGKLPAIL 223 (424)
Q Consensus 164 ~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l-~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~ 223 (424)
++|.+.+ ..|..+.++++|++|++++|.+ ....+. +..+++|++|++++|.+++..+..+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 9998876 3566788889999999998884 433333 8888888899998888887665544
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.7e-37 Score=295.53 Aligned_cols=310 Identities=19% Similarity=0.178 Sum_probs=264.6
Q ss_pred CCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 82 ALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
.+++++.++++++.++...+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35889999999999886655667899999999999999997777799999999999999999998888889999999999
Q ss_pred ecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCC
Q 036985 162 YLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGT 240 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~ 240 (424)
++++|.+....+..|.++++|++|++++|.+++..+. +..+++|++|++++|.+++. +....++|+.|++++|.+++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSCCSE-
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeecccccccc-
Confidence 9999999965555679999999999999999987776 89999999999999999865 33333899999999998874
Q ss_pred ChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChh
Q 036985 241 VPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPL 320 (424)
Q Consensus 241 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 320 (424)
+...++|++|++++|.+... |.. ..++|++|++++|.+++.+ .+ ..+++|++|++++|.+++..|.
T Consensus 201 ----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~~---~l----~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 201 ----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDTA---WL----LNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp ----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCCG---GG----GGCTTCSEEECCSSCCCEEESG
T ss_pred ----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCcccH---HH----cCCCCccEEECCCCcCCCcChh
Confidence 34557899999999999854 432 3579999999999998752 22 6789999999999999988899
Q ss_pred hhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCC
Q 036985 321 FMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPF 400 (424)
Q Consensus 321 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~ 400 (424)
.+..+++|+.|++++|++++ +|..+.. +++|++|++++|+++ .+|..+..+ ++|++|++++|.|+.+|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~--------l~~L~~L~L~~n~l~-~~~~~~~~l-~~L~~L~L~~N~i~~~~- 334 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVA-LNLYGQP--------IPTLKVLDLSHNHLL-HVERNQPQF-DRLENLYLDHNSIVTLK- 334 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCE-EECSSSC--------CTTCCEEECCSSCCC-CCGGGHHHH-TTCSEEECCSSCCCCCC-
T ss_pred HccccccCCEEECCCCcCcc-cCcccCC--------CCCCCEEECCCCcce-ecCcccccc-CcCCEEECCCCccceeC-
Confidence 99999999999999999986 4444443 445999999999998 678888889 59999999999999997
Q ss_pred ccccccCCCcccccccCccCC
Q 036985 401 SFFFCQGARQKSLVECNRFTP 421 (424)
Q Consensus 401 ~~~~~~~~l~~l~l~~n~l~~ 421 (424)
+..+. .|+.+++++|++..
T Consensus 335 -~~~~~-~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 335 -LSTHH-TLKNLTLSHNDWDC 353 (390)
T ss_dssp -CCTTC-CCSEEECCSSCEEH
T ss_pred -chhhc-cCCEEEcCCCCccc
Confidence 33444 49999999999863
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=304.73 Aligned_cols=315 Identities=21% Similarity=0.186 Sum_probs=250.7
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
+++++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 78999999999999888888999999999999999999888999999999999999999999 56665 8999999999
Q ss_pred ccCcCCC-CchhhcCCCCCCcEEEeecccccccCCCCCCCCCc--CEEEccCCcC--CCCCCCccc--------------
Q 036985 164 DYNNLEG-TIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNL--YFLDASDNAI--SGKLPAILP-------------- 224 (424)
Q Consensus 164 ~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~~~-------------- 224 (424)
++|.+.+ .+|..|+++++|++|++++|.+++ ..+..+++| +.|++++|.+ .+..+..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 9999987 478899999999999999999986 236667777 9999999988 444433322
Q ss_pred -----------------------------------------------------------------------cCCcEEEcc
Q 036985 225 -----------------------------------------------------------------------TSLVQISMR 233 (424)
Q Consensus 225 -----------------------------------------------------------------------~~L~~L~l~ 233 (424)
++|++|+++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 255 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence 157777777
Q ss_pred cCcCCCCChhhh-----cCCCCCcEEEeeCCcCCCCcC-cc-------------------------ccCCCCCCEEeccC
Q 036985 234 NNNLQGTVPESL-----KLLSYLQVVDLSHNKLSGSVP-SF-------------------------VFSHPSLQQLTLSF 282 (424)
Q Consensus 234 ~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~-------------------------l~~~~~L~~L~L~~ 282 (424)
+|.+++.+|..+ ..+++|+.+++++|.+ .+| .. ...+++|++|++++
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred cccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence 777776666665 5555555555555554 122 11 15677888888888
Q ss_pred CcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCC--CChhhhcCCCCCCEEeccCCcCcccCchh-HHhhcCCCCCCCCC
Q 036985 283 NQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQG--MLPLFMALMPKLSALSLENNKFTGMIPTE-YAIRVAVPGPGIAP 359 (424)
Q Consensus 283 n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~l~~~~~~~ 359 (424)
|++++. .+..+ ..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|.. +..+ ++
T Consensus 334 n~l~~~-~~~~~----~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l--------~~ 400 (520)
T 2z7x_B 334 NLLTDT-VFENC----GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT--------KS 400 (520)
T ss_dssp SCCCTT-TTTTC----CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC--------TT
T ss_pred CccChh-hhhhh----ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC--------cc
Confidence 888773 23333 567888888888888886 45567888888888888888888756653 4433 44
Q ss_pred ccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccCCC
Q 036985 360 FQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTPV 422 (424)
Q Consensus 360 L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~~ 422 (424)
|++|++++|++++.+|..+. ++|++|++++|+|+.+|..++.+.. |+.+++++|+++..
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~---~~L~~L~Ls~N~l~~ip~~~~~l~~-L~~L~L~~N~l~~l 459 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP---PRIKVLDLHSNKIKSIPKQVVKLEA-LQELNVASNQLKSV 459 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC---TTCCEEECCSSCCCCCCGGGGGCTT-CCEEECCSSCCCCC
T ss_pred CCEEECcCCCCCcchhhhhc---ccCCEEECCCCcccccchhhhcCCC-CCEEECCCCcCCcc
Confidence 99999999999888877664 4899999999999999999996666 99999999999853
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=320.19 Aligned_cols=303 Identities=20% Similarity=0.196 Sum_probs=219.0
Q ss_pred CCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCc-chhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSI-PESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
.+++++|+|++|.+++..+..|.++++|++|++++|...+.+ |..|.++++|++|+|++|.+.+..|..|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 478999999999999888889999999999999999665555 7789999999999999999998889999999999999
Q ss_pred ecccCcCCCCchhh--cCCCCCCcEEEeecccccccCCC--CCCCCCcCEEEccCCcCCCCCCCccc----cCCcEEEcc
Q 036985 162 YLDYNNLEGTIPAS--FNGLSSLKRLEIQSNKLTGEFPE--LGSLKNLYFLDASDNAISGKLPAILP----TSLVQISMR 233 (424)
Q Consensus 162 ~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~----~~L~~L~l~ 233 (424)
++++|.+.+..|.. +.++++|++|++++|.+++..+. +.++++|++|++++|.+++..+..+. ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999998766655 88999999999999999876553 88999999999999999887776654 677788888
Q ss_pred cCcCCCCChhhhcCCCC------CcEEEeeCCcCCCCcCccccC------------------------------------
Q 036985 234 NNNLQGTVPESLKLLSY------LQVVDLSHNKLSGSVPSFVFS------------------------------------ 271 (424)
Q Consensus 234 ~n~l~~~~~~~l~~l~~------L~~L~Ls~n~l~~~~~~~l~~------------------------------------ 271 (424)
+|.+.+..+..+..+++ |++|++++|.+.+..+..+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 87777766665555544 777777777665544433221
Q ss_pred --CCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhh
Q 036985 272 --HPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIR 349 (424)
Q Consensus 272 --~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~ 349 (424)
.++|+.|++++|.+.++.... + ..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~-~----~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRV-F----ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCC-S----SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred cccCCccEEECCCCcccccChhh-h----hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 145666666666665543222 2 445666666666666665555566666666666666666665555555544
Q ss_pred cCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCC
Q 036985 350 VAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCP 399 (424)
Q Consensus 350 ~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip 399 (424)
.+ |++|++++|++.+..+..+..+ ++|++|++++|.++.++
T Consensus 338 ~~--------L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 338 PK--------VAYIDLQKNHIAIIQDQTFKFL-EKLQTLDLRDNALTTIH 378 (844)
T ss_dssp TT--------CCEEECCSCCCCCCCSSCSCSC-CCCCEEEEETCCSCCCS
T ss_pred CC--------CCEEECCCCCCCccChhhhcCC-CCCCEEECCCCCCCccc
Confidence 44 6666666666655444455555 36666666666555544
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=321.95 Aligned_cols=336 Identities=24% Similarity=0.269 Sum_probs=183.9
Q ss_pred CCCCceeEEEeCCCCCcccc-CCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCcc--ccCCCc
Q 036985 81 SALSRVTELNLDQAGYSGSL-STTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPAS--IGSLSS 157 (424)
Q Consensus 81 ~~~~~l~~L~L~~~~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~--~~~l~~ 157 (424)
.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++|++++|.+++..|.. |.++++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 44556666666666444333 455666666666666666666555666666666666666666665544433 556666
Q ss_pred CceEecccCcCCCCch-hhcCCCCCCcEEEeecccccccCCC---------------------------CCCCCC-----
Q 036985 158 LEELYLDYNNLEGTIP-ASFNGLSSLKRLEIQSNKLTGEFPE---------------------------LGSLKN----- 204 (424)
Q Consensus 158 L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~---------------------------l~~l~~----- 204 (424)
|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+. +..+++
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 6666666666654433 3455666666666666555432211 111221
Q ss_pred -cCEEEccCCcCCC--------------------------------------------------------------CCCC
Q 036985 205 -LYFLDASDNAISG--------------------------------------------------------------KLPA 221 (424)
Q Consensus 205 -L~~L~l~~n~l~~--------------------------------------------------------------~~~~ 221 (424)
|+.|++++|.+++ ..+.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~ 284 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence 5555555554433 2222
Q ss_pred ccc--cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcc
Q 036985 222 ILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNI 299 (424)
Q Consensus 222 ~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 299 (424)
.+. ++|+.|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.++.++...+ .
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-----~ 359 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF-----K 359 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS-----C
T ss_pred hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh-----c
Confidence 222 344444444444444444444555555555555555544444445555555555555555544332211 3
Q ss_pred cCCCCcEEEccCCCCCCCC----------------------------------------hhhhcCCCCCCEEeccCCcCc
Q 036985 300 FSSQLIAVDISNNELQGML----------------------------------------PLFMALMPKLSALSLENNKFT 339 (424)
Q Consensus 300 ~~~~L~~L~Ls~n~l~~~~----------------------------------------~~~l~~l~~L~~L~L~~N~l~ 339 (424)
.+++|++|++++|.+++.. +..+..+++|+.|++++|+++
T Consensus 360 ~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 3455555555555444210 011224455555555555554
Q ss_pred ccCchh-HHhhcC----------CC-----------CCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCC
Q 036985 340 GMIPTE-YAIRVA----------VP-----------GPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYR 397 (424)
Q Consensus 340 ~~~~~~-~~~~~~----------l~-----------~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ 397 (424)
+..+.. +..+.+ +. ..++++|++|+|++|++++..|..+..+ ++|++|++++|+|+.
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL-TALRGLSLNSNRLTV 518 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC-CSCSEEEEESCCCSS
T ss_pred ccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch-hhhheeECCCCCCCc
Confidence 322110 000000 00 1245678888888888887777778888 599999999999998
Q ss_pred CCCccccccCCCcccccccCccCCCCC
Q 036985 398 CPFSFFFCQGARQKSLVECNRFTPVIP 424 (424)
Q Consensus 398 ip~~~~~~~~~l~~l~l~~n~l~~~~p 424 (424)
+|...+. ..|+.+++++|++++.+|
T Consensus 519 l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 519 LSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp CCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred cChhhhh--ccccEEECCCCcCCCCCh
Confidence 8887766 458899999999988765
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-36 Score=308.80 Aligned_cols=309 Identities=19% Similarity=0.175 Sum_probs=266.5
Q ss_pred CCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEe
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELY 162 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 162 (424)
+.+++.++++++.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 57789999999999876666788999999999999999987788999999999999999999988888899999999999
Q ss_pred cccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCC
Q 036985 163 LDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTV 241 (424)
Q Consensus 163 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 241 (424)
+++|.+.+..+..|.++++|++|++++|.+++..+. +..+++|++|++++|.+++.. ....++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~-- 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLST-- 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSE--
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCcccc--
Confidence 999999976666689999999999999999988886 999999999999999998653 3333899999999998874
Q ss_pred hhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhh
Q 036985 242 PESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLF 321 (424)
Q Consensus 242 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 321 (424)
+...++|+.|++++|.+... +..+ .++|+.|++++|.+++. ..+ ..+++|++|++++|.+++..|..
T Consensus 207 ---l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~---~~l----~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 207 ---LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT---AWL----LNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp ---EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC---GGG----GGCTTCSEEECCSSCCCEEESGG
T ss_pred ---ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC---hhh----ccCCCCCEEECCCCccCCCCHHH
Confidence 34567899999999999844 3322 37899999999999874 222 67899999999999999998999
Q ss_pred hcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCc
Q 036985 322 MALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFS 401 (424)
Q Consensus 322 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~ 401 (424)
+..+++|+.|+|++|.+++ +|..+..+ ++|++|+|++|.++ .+|..+..+ ++|++|++++|.|+.+|
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l--------~~L~~L~Ls~N~l~-~i~~~~~~l-~~L~~L~L~~N~l~~~~-- 340 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA-LNLYGQPI--------PTLKVLDLSHNHLL-HVERNQPQF-DRLENLYLDHNSIVTLK-- 340 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE-EECSSSCC--------TTCCEEECCSSCCC-CCGGGHHHH-TTCSEEECCSSCCCCCC--
T ss_pred hcCccCCCEEECCCCCCCC-CCcccccC--------CCCcEEECCCCCCC-ccCcccccC-CCCCEEECCCCCCCCcC--
Confidence 9999999999999999986 45444434 44999999999998 688889999 69999999999999987
Q ss_pred cccccCCCcccccccCccCC
Q 036985 402 FFFCQGARQKSLVECNRFTP 421 (424)
Q Consensus 402 ~~~~~~~l~~l~l~~n~l~~ 421 (424)
+..+. .|+.+++++|++.+
T Consensus 341 ~~~~~-~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 341 LSTHH-TLKNLTLSHNDWDC 359 (597)
T ss_dssp CCTTC-CCSEEECCSSCEEH
T ss_pred hhhcC-CCCEEEeeCCCCCC
Confidence 33344 49999999999863
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-37 Score=309.33 Aligned_cols=330 Identities=21% Similarity=0.210 Sum_probs=239.6
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57999999999999888889999999999999999999777888999999999999999999888889999999999999
Q ss_pred ccCcCCCCchhhcCCCCCCcEEEeeccccccc-CCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCC----cEEEcccC
Q 036985 164 DYNNLEGTIPASFNGLSSLKRLEIQSNKLTGE-FPE-LGSLKNLYFLDASDNAISGKLPAILP--TSL----VQISMRNN 235 (424)
Q Consensus 164 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L----~~L~l~~n 235 (424)
++|.+.+..+..++++++|++|++++|.+++. .|. +.++++|++|++++|.+++..+..+. .++ +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 99999976666799999999999999999863 344 89999999999999988765443332 222 33333333
Q ss_pred cCCCC---------------------------------------------------------------------------
Q 036985 236 NLQGT--------------------------------------------------------------------------- 240 (424)
Q Consensus 236 ~l~~~--------------------------------------------------------------------------- 240 (424)
.+++.
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 32211
Q ss_pred ------ChhhhcCCCCCcEEEeeCCcCCCCcCccc------------------------------------------cCC
Q 036985 241 ------VPESLKLLSYLQVVDLSHNKLSGSVPSFV------------------------------------------FSH 272 (424)
Q Consensus 241 ------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l------------------------------------------~~~ 272 (424)
.+..+..+++|++|++++|.+.+ +|..+ ..+
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 11222233344444444433331 11111 234
Q ss_pred CCCCEEeccCCcCCCCCC-CCCC-------------------CCCcccCCCCcEEEccCCCCCCCCh-hhhcCCCCCCEE
Q 036985 273 PSLQQLTLSFNQFTSIQQ-PAPT-------------------NDNNIFSSQLIAVDISNNELQGMLP-LFMALMPKLSAL 331 (424)
Q Consensus 273 ~~L~~L~L~~n~l~~~~~-~~~~-------------------~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L 331 (424)
++|++|++++|.+++... +... ......+++|++|++++|.+.+..+ ..+..+++|++|
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 566666666666554310 0000 0001345667777777776665544 356677777777
Q ss_pred eccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCc-cccChhhhhhccCCcEEEccCCCCCCC-CCccccccCCC
Q 036985 332 SLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLF-GAIPRSLLELQPGSANVRLADNCLYRC-PFSFFFCQGAR 409 (424)
Q Consensus 332 ~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~-~~~p~~~~~l~~~L~~L~l~~N~l~~i-p~~~~~~~~~l 409 (424)
++++|.+.+..|..+..+.+ |++|++++|+++ +.+|..+..+ ++|++|++++|.++.+ |..+..+.. |
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~--------L~~L~l~~n~l~~~~~p~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~-L 496 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSS--------LEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSS-L 496 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTT--------CCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTT-C
T ss_pred eCcCCcccccchhhhhcCCc--------CcEEECcCCcCccccchhhhhcc-cCCCEEECCCCccccCChhhhhcccC-C
Confidence 77777777766666665555 999999999997 5789889888 5999999999999987 555555555 9
Q ss_pred cccccccCccCCCCC
Q 036985 410 QKSLVECNRFTPVIP 424 (424)
Q Consensus 410 ~~l~l~~n~l~~~~p 424 (424)
+.+++++|++++..|
T Consensus 497 ~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 497 QVLNMASNQLKSVPD 511 (570)
T ss_dssp CEEECCSSCCSCCCT
T ss_pred CEEeCCCCcCCCCCH
Confidence 999999999988754
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-36 Score=311.44 Aligned_cols=256 Identities=23% Similarity=0.231 Sum_probs=129.6
Q ss_pred CCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 82 ALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
+++++++|++++|.+++..|..+.++++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence 34555666666665555555555556666666666665553333345556666666666665554444555556666666
Q ss_pred ecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC---CCCCCCcCEEEccCCcCCCCCCCccc--------------
Q 036985 162 YLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE---LGSLKNLYFLDASDNAISGKLPAILP-------------- 224 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~~~-------------- 224 (424)
++++|.+.+..+..+.++++|++|++++|.+++..+. ...+++|++|++++|.+++..+..+.
T Consensus 127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp ECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred ECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 6666655555555555555666666665555543332 12334555555555554443332211
Q ss_pred ---------------cCCcEEEcccCcCCCCChhhhcCCCC--CcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCC
Q 036985 225 ---------------TSLVQISMRNNNLQGTVPESLKLLSY--LQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTS 287 (424)
Q Consensus 225 ---------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 287 (424)
++|+.|++++|.+.+..+..+..++. |++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence 12333333333333333333333322 4455555554444444444444555555555544443
Q ss_pred CCCCCCC----------------------------CCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCc
Q 036985 288 IQQPAPT----------------------------NDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNK 337 (424)
Q Consensus 288 ~~~~~~~----------------------------~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~ 337 (424)
+....+. ......+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 2111100 0011345667777777777766666666666666666665554
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.2e-36 Score=302.35 Aligned_cols=314 Identities=21% Similarity=0.186 Sum_probs=249.6
Q ss_pred ceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecc
Q 036985 85 RVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLD 164 (424)
Q Consensus 85 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~ 164 (424)
..++++++++.+++ +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 34899999999986 565443 899999999999998888899999999999999999998889999999999999999
Q ss_pred cCcCCCCchhhcCCCCCCcEEEeecccccccC-C-CCCCCCCcCEEEccCCcCCCCCCCccccCC--cEEEcccCcC--C
Q 036985 165 YNNLEGTIPASFNGLSSLKRLEIQSNKLTGEF-P-ELGSLKNLYFLDASDNAISGKLPAILPTSL--VQISMRNNNL--Q 238 (424)
Q Consensus 165 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L--~~L~l~~n~l--~ 238 (424)
+|.++ .+|.. .+++|++|++++|.+++.. + .+.++++|++|++++|.+++.....+ +++ ++|++++|.+ +
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV-AHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGG-TTSCEEEEEEEESSCCCC
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhh-hhceeeEEEeeccccccc
Confidence 99998 56665 8999999999999999754 3 39999999999999999986332222 566 9999999988 6
Q ss_pred CCChhhhcCCC---------------------------------------------------------------------
Q 036985 239 GTVPESLKLLS--------------------------------------------------------------------- 249 (424)
Q Consensus 239 ~~~~~~l~~l~--------------------------------------------------------------------- 249 (424)
+..+..+..+.
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 55555444322
Q ss_pred ------------CCcEEEeeCCcCCCCcCccc------------------------------------------------
Q 036985 250 ------------YLQVVDLSHNKLSGSVPSFV------------------------------------------------ 269 (424)
Q Consensus 250 ------------~L~~L~Ls~n~l~~~~~~~l------------------------------------------------ 269 (424)
+|++|++++|.+++.+|..+
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 67888888888887776654
Q ss_pred -----cCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCC--ChhhhcCCCCCCEEeccCCcCcccC
Q 036985 270 -----FSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGM--LPLFMALMPKLSALSLENNKFTGMI 342 (424)
Q Consensus 270 -----~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~N~l~~~~ 342 (424)
..+++|++|++++|++++. .+..+ ..+++|++|++++|++++. +|..+..+++|+.|++++|++++.+
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDS-VFQGC----STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTT-TTTTC----CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred cccCccCCCCceEEECCCCccccc-hhhhh----cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 4566777777777777763 22223 5677788888888888753 3456777888888888888887655
Q ss_pred chh-HHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccCC
Q 036985 343 PTE-YAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTP 421 (424)
Q Consensus 343 ~~~-~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~ 421 (424)
|.. +..+ ++|++|++++|++++.+|..+. ++|++|++++|+|+.+|..++.+.. |+.+++++|+++.
T Consensus 420 ~~~~~~~l--------~~L~~L~l~~n~l~~~~~~~l~---~~L~~L~L~~N~l~~ip~~~~~l~~-L~~L~L~~N~l~~ 487 (562)
T 3a79_B 420 YDRTCAWA--------ESILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIMSIPKDVTHLQA-LQELNVASNQLKS 487 (562)
T ss_dssp SSCCCCCC--------TTCCEEECCSSCCCGGGGSSCC---TTCSEEECCSSCCCCCCTTTTSSCC-CSEEECCSSCCCC
T ss_pred ChhhhcCc--------ccCCEEECCCCCCCcchhhhhc---CcCCEEECCCCcCcccChhhcCCCC-CCEEECCCCCCCC
Confidence 543 3333 4499999999999887776653 4899999999999999999996555 9999999999985
Q ss_pred C
Q 036985 422 V 422 (424)
Q Consensus 422 ~ 422 (424)
.
T Consensus 488 l 488 (562)
T 3a79_B 488 V 488 (562)
T ss_dssp C
T ss_pred C
Confidence 3
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-35 Score=306.22 Aligned_cols=339 Identities=21% Similarity=0.217 Sum_probs=210.3
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCC--CcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPY--LETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~--L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
++++.|++++|.+++..+..+..++. |++|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 45677777777777777777766644 7788888777776666777777778888887777777777777777777777
Q ss_pred ecccCcCCC-----Cchh----hcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCC--CCccc----c
Q 036985 162 YLDYNNLEG-----TIPA----SFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKL--PAILP----T 225 (424)
Q Consensus 162 ~L~~n~l~~-----~~~~----~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~--~~~~~----~ 225 (424)
++++|...+ .+|. .|..+++|++|++++|.+++..+. +..+++|++|++++|.+.... ...+. +
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 777654432 1222 556667777777777777665554 666666666666666532211 11111 3
Q ss_pred CCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcC-ccccCCCCCCEEeccCCcCCCCCCCCC-----------
Q 036985 226 SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVP-SFVFSHPSLQQLTLSFNQFTSIQQPAP----------- 293 (424)
Q Consensus 226 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~----------- 293 (424)
+|+.|++++|.+++..+..+..+++|+.|++++|.+.+.+| ..+..+++|++|++++|+++++....+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 45555555555555555555555555555555555543333 344445555555555554433211110
Q ss_pred ----------CCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEE
Q 036985 294 ----------TNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRL 363 (424)
Q Consensus 294 ----------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L 363 (424)
.......+++|++|++++|++++..+..+..+++|++|++++|++++..+..+.........++++|++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 0001145677888888888888777777788888888888888877542221110000001234458888
Q ss_pred EccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccCCCC
Q 036985 364 LLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTPVI 423 (424)
Q Consensus 364 ~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~~~ 423 (424)
++++|+++...+..|..+ ++|++|++++|+++.+|...+....+|+.+++++|++++..
T Consensus 542 ~L~~N~l~~i~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDL-FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp ECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred ECCCCCCCCCCHHHcccc-cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 888888874333457777 48888888888888888887665556888888888887754
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.8e-35 Score=277.82 Aligned_cols=305 Identities=20% Similarity=0.272 Sum_probs=260.1
Q ss_pred CCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 82 ALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
.++++++|+++++.+... + .+..+++|++|++++|.+++. +. +.++++|++|++++|.+++ + +.+.++++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEE
Confidence 468899999999998753 3 488899999999999999854 44 9999999999999999985 4 469999999999
Q ss_pred ecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCC
Q 036985 162 YLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTV 241 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 241 (424)
++++|.+.+. +. +..+++|++|++++|......+.+..+++|++|++++|.+.+..+....++|++|++++|.+.+..
T Consensus 116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG
T ss_pred ECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccc
Confidence 9999999854 33 889999999999999776666669999999999999999987655222389999999999998653
Q ss_pred hhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhh
Q 036985 242 PESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLF 321 (424)
Q Consensus 242 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 321 (424)
+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++++. . ..+++|++|++++|.+++. ..
T Consensus 194 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~---~----~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 194 P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP---L----ANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---G----TTCTTCCEEECCSSCCCCC--GG
T ss_pred c--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc---h----hcCCCCCEEECCCCccCCC--hh
Confidence 3 8899999999999999986544 7889999999999999998654 2 6789999999999999965 46
Q ss_pred hcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCc
Q 036985 322 MALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFS 401 (424)
Q Consensus 322 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~ 401 (424)
+..+++|++|++++|.+++. ..+..+.+ |++|++++|++++..|..+..+ ++|++|++++|+++.++.
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~--------L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~- 328 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQ--------LNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQNHITDIRP- 328 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTT--------CSEEECCSSCCCGGGHHHHHTC-TTCSEEECCSSSCCCCGG-
T ss_pred HhcCCCcCEEEccCCccCCC--hhhcCCCC--------CCEEECcCCcCCCcChhHhhcc-ccCCEEEccCCccccccC-
Confidence 88999999999999999864 34666555 9999999999999999999999 699999999999999877
Q ss_pred cccccCCCcccccccCccC
Q 036985 402 FFFCQGARQKSLVECNRFT 420 (424)
Q Consensus 402 ~~~~~~~l~~l~l~~n~l~ 420 (424)
+..+.. |+.+++++|+|+
T Consensus 329 ~~~l~~-L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 LASLSK-MDSADFANQVIK 346 (347)
T ss_dssp GGGCTT-CSEESSSCC---
T ss_pred hhhhhc-cceeehhhhccc
Confidence 555555 999999999986
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-36 Score=306.55 Aligned_cols=333 Identities=24% Similarity=0.262 Sum_probs=228.8
Q ss_pred CCCCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccc-cCCccccCCCcC
Q 036985 80 VSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSG-EIPASIGSLSSL 158 (424)
Q Consensus 80 ~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~p~~~~~l~~L 158 (424)
+.+++++++|++++|.+++..|..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..++++++|
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 4578999999999999998888899999999999999999998888889999999999999999986 356789999999
Q ss_pred ceEecccCcCCCCch-hhcCCCCCCcEEEeecccccccCCC-CCC------------------------CCCcCEEEccC
Q 036985 159 EELYLDYNNLEGTIP-ASFNGLSSLKRLEIQSNKLTGEFPE-LGS------------------------LKNLYFLDASD 212 (424)
Q Consensus 159 ~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~-l~~------------------------l~~L~~L~l~~ 212 (424)
++|++++|.+.+.+| ..+.++++|++|++++|.+++..+. +.. +++|++|++++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence 999999998544554 6889999999999999999876554 443 56677777777
Q ss_pred CcCCCCCC--Ccc---c---------------------------------------------------------------
Q 036985 213 NAISGKLP--AIL---P--------------------------------------------------------------- 224 (424)
Q Consensus 213 n~l~~~~~--~~~---~--------------------------------------------------------------- 224 (424)
|.+++... ..+ .
T Consensus 206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 285 (549)
T 2z81_A 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285 (549)
T ss_dssp CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCE
T ss_pred CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccc
Confidence 77665310 000 0
Q ss_pred ------------------------cCCcEEEcccCcCCCCChhhh-cCCCCCcEEEeeCCcCCCCcCc---cccCCCCCC
Q 036985 225 ------------------------TSLVQISMRNNNLQGTVPESL-KLLSYLQVVDLSHNKLSGSVPS---FVFSHPSLQ 276 (424)
Q Consensus 225 ------------------------~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~---~l~~~~~L~ 276 (424)
.+++.|++++|.+. .+|..+ ..+++|++|++++|++++.+|. .+..+++|+
T Consensus 286 L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp EEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred ccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 23444444444444 233333 4567777777777777654432 255666777
Q ss_pred EEeccCCcCCCCCC-CCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHH-hhcC---
Q 036985 277 QLTLSFNQFTSIQQ-PAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYA-IRVA--- 351 (424)
Q Consensus 277 ~L~L~~n~l~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~--- 351 (424)
+|++++|++++++. +... ..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+. .+..
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~----~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~L 438 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEIL----LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDV 438 (549)
T ss_dssp EEECTTSCCCCHHHHHHHG----GGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEEC
T ss_pred EEEccCCcccccccchhhh----hcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhcCCceEEEC
Confidence 77777777665431 0111 45667777777777776 455566666777777777777653 222111 1110
Q ss_pred ----CC--CCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccCCC
Q 036985 352 ----VP--GPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTPV 422 (424)
Q Consensus 352 ----l~--~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~~ 422 (424)
+. ...+++|++|++++|+++ .+|. ...+ ++|++|++++|+++.+|...+....+|+.+++++|++.+.
T Consensus 439 s~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 439 SNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLF-PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGC-TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CCCChhhhcccCChhcEEECCCCccC-cCCC-cccC-ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 00 024566777888888776 5665 3455 5788888888888777766444444478888888877654
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.6e-34 Score=284.23 Aligned_cols=304 Identities=25% Similarity=0.320 Sum_probs=188.8
Q ss_pred CCCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCce
Q 036985 81 SALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEE 160 (424)
Q Consensus 81 ~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 160 (424)
..++++++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|++++|.+++. +. +.++++|++
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~ 138 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNR 138 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSE
T ss_pred hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCE
Confidence 346788888888888876544 7788888888888888875444 88888888888888888754 33 778888888
Q ss_pred EecccCcCCCCchhhcC---------------------CCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCC
Q 036985 161 LYLDYNNLEGTIPASFN---------------------GLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKL 219 (424)
Q Consensus 161 L~L~~n~l~~~~~~~l~---------------------~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~ 219 (424)
|++++|.+.+. + .+. ++++|++|++++|.+++. +.+..+++|++|++++|.+.+..
T Consensus 139 L~l~~n~l~~~-~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 139 LELSSNTISDI-S-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp EEEEEEEECCC-G-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred EECCCCccCCC-h-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccc
Confidence 88888877643 2 244 445555555555554432 22455555555555555555444
Q ss_pred CCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcc
Q 036985 220 PAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNI 299 (424)
Q Consensus 220 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 299 (424)
+....++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++++. . .
T Consensus 216 ~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~----~ 284 (466)
T 1o6v_A 216 PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP---L----A 284 (466)
T ss_dssp GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG---G----T
T ss_pred cccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc---c----c
Confidence 322225566666666655532 345556666666666666654333 5556666666666666665432 1 3
Q ss_pred cCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhh
Q 036985 300 FSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLL 379 (424)
Q Consensus 300 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~ 379 (424)
.+++|++|++++|++++..+ +..+++|+.|++++|++++..| +..+.+ |++|++++|++++. ..+.
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~--------L~~L~l~~n~l~~~--~~l~ 350 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK--------LQRLFFYNNKVSDV--SSLA 350 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTT--------CCEEECCSSCCCCC--GGGT
T ss_pred CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCcc--------CCEeECCCCccCCc--hhhc
Confidence 45666666666666665433 5666666666666666665443 334333 77777777766643 3455
Q ss_pred hhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccCC
Q 036985 380 ELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTP 421 (424)
Q Consensus 380 ~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~ 421 (424)
.+ ++|++|++++|+++.++. +..+.. |+.+++++|++++
T Consensus 351 ~l-~~L~~L~l~~n~l~~~~~-~~~l~~-L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 351 NL-TNINWLSAGHNQISDLTP-LANLTR-ITQLGLNDQAWTN 389 (466)
T ss_dssp TC-TTCCEEECCSSCCCBCGG-GTTCTT-CCEEECCCEEEEC
T ss_pred cC-CCCCEEeCCCCccCccch-hhcCCC-CCEEeccCCcccC
Confidence 66 467777777777766654 444444 6677777776665
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.4e-34 Score=296.75 Aligned_cols=135 Identities=27% Similarity=0.261 Sum_probs=120.5
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
+.+++|+|++|.+++..+..|.++++|++|+|++|+|++..+.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999888889999999999999999999777788999999999999999999777778999999999999
Q ss_pred ccCcCCCCchhhcCCCCCCcEEEeecccccccC-CC-CCCCCCcCEEEccCCcCCCC
Q 036985 164 DYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEF-PE-LGSLKNLYFLDASDNAISGK 218 (424)
Q Consensus 164 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~-l~~l~~L~~L~l~~n~l~~~ 218 (424)
++|++++..+..|+++++|++|++++|.+++.. +. +..+++|++|++++|++++.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 999999777778999999999999999998643 33 78899999999999887654
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-33 Score=279.63 Aligned_cols=306 Identities=25% Similarity=0.317 Sum_probs=239.7
Q ss_pred CCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEe
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELY 162 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 162 (424)
+++++.|+++++.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 5789999999999875 44 37889999999999999996544 9999999999999999996544 99999999999
Q ss_pred cccCcCCCCchhhcCCCCCCcEEEeecccccccCC--------------------CCCCCCCcCEEEccCCcCCCCCCCc
Q 036985 163 LDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFP--------------------ELGSLKNLYFLDASDNAISGKLPAI 222 (424)
Q Consensus 163 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--------------------~l~~l~~L~~L~l~~n~l~~~~~~~ 222 (424)
+++|.+.+..+ +.++++|++|++++|.+.+... .+..+++|++|++++|.+++.....
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~ 196 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 196 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhc
Confidence 99999986533 8999999999999999875321 1445667777777777766542211
Q ss_pred cccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCC
Q 036985 223 LPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSS 302 (424)
Q Consensus 223 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 302 (424)
-.++|++|++++|.+.+..+ ++.+++|++|++++|.+++. ..+..+++|++|++++|.+++++. . ..++
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~----~~l~ 265 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---L----SGLT 265 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---G----TTCT
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---h----hcCC
Confidence 11777888888877775544 66677888888888877743 346677888888888888877533 2 5678
Q ss_pred CCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhc
Q 036985 303 QLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQ 382 (424)
Q Consensus 303 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~ 382 (424)
+|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+.+ |++|++++|++++..| +..+
T Consensus 266 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~--------L~~L~L~~n~l~~~~~--~~~l- 330 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN--------LTYLTLYFNNISDISP--VSSL- 330 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT--------CSEEECCSSCCSCCGG--GGGC-
T ss_pred CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC--------CCEEECcCCcCCCchh--hccC-
Confidence 88888888888886544 7788888899998888886443 555555 9999999999987666 6777
Q ss_pred cCCcEEEccCCCCCCCCCccccccCCCcccccccCccCCCCC
Q 036985 383 PGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTPVIP 424 (424)
Q Consensus 383 ~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~~~p 424 (424)
++|++|++++|.++.++ .+..+.. |+.+++++|++++..|
T Consensus 331 ~~L~~L~l~~n~l~~~~-~l~~l~~-L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDVS-SLANLTN-INWLSAGHNQISDLTP 370 (466)
T ss_dssp TTCCEEECCSSCCCCCG-GGTTCTT-CCEEECCSSCCCBCGG
T ss_pred ccCCEeECCCCccCCch-hhccCCC-CCEEeCCCCccCccch
Confidence 59999999999999885 5556655 9999999999998765
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-34 Score=276.14 Aligned_cols=288 Identities=17% Similarity=0.227 Sum_probs=254.1
Q ss_pred CCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEE
Q 036985 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRL 185 (424)
Q Consensus 106 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 185 (424)
.+++++.|+++++.++...+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 57899999999999985545567899999999999999998777899999999999999999998888889999999999
Q ss_pred EeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCC
Q 036985 186 EIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLS 262 (424)
Q Consensus 186 ~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 262 (424)
++++|.++..++. +..+++|++|++++|.+++..+..+. ++|++|++++|.+++. .+..+++|+.|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999999977666 78999999999999999988777666 8999999999999865 3567899999999999987
Q ss_pred CCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccC
Q 036985 263 GSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMI 342 (424)
Q Consensus 263 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 342 (424)
+ +...++|++|++++|.++.++.. ..++|++|++++|.+++. ..+..+++|+.|++++|.+++..
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~~~~--------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVVRGP--------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEEECC--------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred c-----cCCCCcceEEECCCCeeeecccc--------ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence 4 33457899999999999986442 347899999999999965 57899999999999999999988
Q ss_pred chhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccCCC
Q 036985 343 PTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTPV 422 (424)
Q Consensus 343 ~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~~ 422 (424)
|..+..+.+ |++|++++|++++ +|..+..+ |+|++|++++|+++.+|..+..+.. |+.+++++|+++..
T Consensus 265 ~~~~~~l~~--------L~~L~L~~n~l~~-~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~l~~-L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 265 YHPFVKMQR--------LERLYISNNRLVA-LNLYGQPI-PTLKVLDLSHNHLLHVERNQPQFDR-LENLYLDHNSIVTL 333 (390)
T ss_dssp SGGGTTCSS--------CCEEECCSSCCCE-EECSSSCC-TTCCEEECCSSCCCCCGGGHHHHTT-CSEEECCSSCCCCC
T ss_pred hhHcccccc--------CCEEECCCCcCcc-cCcccCCC-CCCCEEECCCCcceecCccccccCc-CCEEECCCCcccee
Confidence 988887776 9999999999985 56666677 6999999999999999998877776 99999999999764
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-33 Score=276.98 Aligned_cols=318 Identities=17% Similarity=0.126 Sum_probs=223.7
Q ss_pred CCCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCce
Q 036985 81 SALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEE 160 (424)
Q Consensus 81 ~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 160 (424)
..++++++|++++|.+++. + ++.+++|++|++++|.+++. + ++++++|++|++++|.+++ +| ++.+++|++
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~ 131 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY 131 (457)
T ss_dssp GGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred cccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence 3567777777777777763 2 66777777777777777753 2 7777777777777777775 33 677777777
Q ss_pred EecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCC
Q 036985 161 LYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGT 240 (424)
Q Consensus 161 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~ 240 (424)
|++++|.+++. .++.+++|++|++++|...+.. .+..+++|++|++++|.+++. +..-.++|+.|++++|.+++.
T Consensus 132 L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l-~l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 132 LNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp EECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCC-CCTTCTTCCEEECCSSCCSCC
T ss_pred EECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCcccee-ccccCCCCCEEECcCCcCCee
Confidence 77777777753 2667777778887777544333 467778888888888887763 322227788888888888765
Q ss_pred ChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCC--CcccCCCCcEEEccCCCCCCCC
Q 036985 241 VPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTND--NNIFSSQLIAVDISNNELQGML 318 (424)
Q Consensus 241 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~ 318 (424)
.++.+++|++|++++|++++ +| +..+++|++|++++|++++++......- ......+|++|++++|.+.+.+
T Consensus 207 ---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 207 ---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred ---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcc
Confidence 36778888888888888886 45 6778888888888888887542211000 0000113445555555555555
Q ss_pred hhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCC
Q 036985 319 PLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRC 398 (424)
Q Consensus 319 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~i 398 (424)
| ++.+++|+.|++++|...+.+|.....+..+.-.++++|++|++++|++++ ++ +.++ ++|+.|++++|+|+++
T Consensus 281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l-~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 281 Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHN-TKLKSLSCVNAHIQDF 354 (457)
T ss_dssp E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTC-TTCSEEECCSSCCCBC
T ss_pred c--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccC-CcCcEEECCCCCCCCc
Confidence 4 467789999999999888888866555666666778899999999999997 44 7888 5999999999999887
Q ss_pred CCcccc-----------ccCCCcccccccCccCCCCC
Q 036985 399 PFSFFF-----------CQGARQKSLVECNRFTPVIP 424 (424)
Q Consensus 399 p~~~~~-----------~~~~l~~l~l~~n~l~~~~p 424 (424)
|.--.. ....++.++++.|+++|.+|
T Consensus 355 ~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 355 SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp TTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECC
T ss_pred cccccccccCCcEEecceeeecCccccccCcEEEEcC
Confidence 531110 01236788899999998887
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.1e-33 Score=267.00 Aligned_cols=285 Identities=21% Similarity=0.289 Sum_probs=243.4
Q ss_pred CCCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCce
Q 036985 81 SALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEE 160 (424)
Q Consensus 81 ~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 160 (424)
..++++++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+.++++|++|++++|.+.+. +. +..+++|++
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~ 136 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYS 136 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCE
T ss_pred hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeE
Confidence 457899999999999986544 8899999999999999985 44 699999999999999999954 44 899999999
Q ss_pred EecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCC
Q 036985 161 LYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGT 240 (424)
Q Consensus 161 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~ 240 (424)
|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+....++|+.+++++|.+.+.
T Consensus 137 L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 137 LNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp EECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred EECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCC
Confidence 9999997664444 58999999999999999886544 889999999999999998765522238999999999999865
Q ss_pred ChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChh
Q 036985 241 VPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPL 320 (424)
Q Consensus 241 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 320 (424)
.+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++++. . ..+++|++|++++|.+++. .
T Consensus 215 ~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~----~~l~~L~~L~l~~n~l~~~--~ 281 (347)
T 4fmz_A 215 TP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA---V----KDLTKLKMLNVGSNQISDI--S 281 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---G----TTCTTCCEEECCSSCCCCC--G
T ss_pred ch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChh---H----hcCCCcCEEEccCCccCCC--h
Confidence 44 8899999999999999996543 8899999999999999998532 2 5679999999999999975 4
Q ss_pred hhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCC
Q 036985 321 FMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYR 397 (424)
Q Consensus 321 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ 397 (424)
.+..+++|+.|++++|.+++..+..+..+++ |++|++++|++++..| +..+ ++|++|++++|.|++
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--------L~~L~L~~n~l~~~~~--~~~l-~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN--------LTTLFLSQNHITDIRP--LASL-SKMDSADFANQVIKK 347 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT--------CSEEECCSSSCCCCGG--GGGC-TTCSEESSSCC----
T ss_pred hhcCCCCCCEEECcCCcCCCcChhHhhcccc--------CCEEEccCCccccccC--hhhh-hccceeehhhhcccC
Confidence 5889999999999999999988888888777 9999999999987666 7788 699999999999864
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.6e-33 Score=275.58 Aligned_cols=300 Identities=19% Similarity=0.121 Sum_probs=247.8
Q ss_pred CCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 82 ALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
.++++++|++++|.+++. | .+..+++|++|++++|.+++. + ++.+++|++|++++|.+++. + ++++++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 468999999999999975 4 689999999999999999964 4 89999999999999999964 3 8999999999
Q ss_pred ecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCC
Q 036985 162 YLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTV 241 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 241 (424)
++++|.+++. + +..+++|++|++++|.+++. .+..+++|++|++++|...+.++..-.++|++|++++|.+++.
T Consensus 112 ~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l- 185 (457)
T 3bz5_A 112 NCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL- 185 (457)
T ss_dssp ECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-
T ss_pred ECCCCcCCee-c--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee-
Confidence 9999999864 3 89999999999999999975 4889999999999999665555433338999999999999974
Q ss_pred hhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhh
Q 036985 242 PESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLF 321 (424)
Q Consensus 242 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 321 (424)
+ +..+++|+.|++++|++++. .+..+++|++|++++|++++++ . ..+++|++|++++|++++..+..
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip----~----~~l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID----V----TPLTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC----C----TTCTTCSEEECCSSCCSCCCCTT
T ss_pred c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC----c----cccCCCCEEEeeCCcCCCcCHHH
Confidence 3 78899999999999999964 3888999999999999999864 2 56789999999999999875444
Q ss_pred hcCCC-------CCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChh--------hhhhccCCc
Q 036985 322 MALMP-------KLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRS--------LLELQPGSA 386 (424)
Q Consensus 322 l~~l~-------~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~--------~~~l~~~L~ 386 (424)
+..++ +|+.|++++|.+.+.+|. ..+++|+.|++++|...+.+|.. +... |+|+
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~----------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~-~~L~ 321 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQA----------EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN-PKLV 321 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEEC----------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC-TTCC
T ss_pred CCCCCEEeccCCCCCEEECCCCccCCcccc----------cccccCCEEECCCCcccceeccCCCcceEechhhc-ccCC
Confidence 33333 444555555555554442 24556999999999887777643 3445 6899
Q ss_pred EEEccCCCCCCCCCccccccCCCcccccccCccCCC
Q 036985 387 NVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTPV 422 (424)
Q Consensus 387 ~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~~ 422 (424)
+|++++|+|+.+| +..+.. |+.+++++|++++.
T Consensus 322 ~L~L~~N~l~~l~--l~~l~~-L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 322 YLYLNNTELTELD--VSHNTK-LKSLSCVNAHIQDF 354 (457)
T ss_dssp EEECTTCCCSCCC--CTTCTT-CSEEECCSSCCCBC
T ss_pred EEECCCCcccccc--cccCCc-CcEEECCCCCCCCc
Confidence 9999999999985 666766 99999999999873
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.8e-33 Score=262.99 Aligned_cols=290 Identities=22% Similarity=0.303 Sum_probs=187.7
Q ss_pred ceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecc
Q 036985 85 RVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLD 164 (424)
Q Consensus 85 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~ 164 (424)
+++.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5778888888876 445444 3678888888888876666778888888888888888887777788888888888888
Q ss_pred cCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChh
Q 036985 165 YNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPE 243 (424)
Q Consensus 165 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 243 (424)
+|.+. .+|..+. ++|++|++++|.+++..+. +..+++|++|++++|.++.. +..+.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~ 167 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS--------------------GFEPG 167 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG--------------------GSCTT
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC--------------------CCCcc
Confidence 88877 4555444 6788888888887766554 67777777777777766421 12333
Q ss_pred hhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhc
Q 036985 244 SLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMA 323 (424)
Q Consensus 244 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 323 (424)
.+..+ +|++|++++|++++ +|..+. ++|++|++++|.+++++...+ ..+++|++|++++|.+++..+..+.
T Consensus 168 ~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 168 AFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDL-----LRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp SSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSS-----TTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred cccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHh-----cCCCCCCEEECCCCcCCcCChhHhh
Confidence 44444 56666666666653 343332 566666666666665432222 4456666666666666666555666
Q ss_pred CCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhh-----ccCCcEEEccCCCCC--
Q 036985 324 LMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLEL-----QPGSANVRLADNCLY-- 396 (424)
Q Consensus 324 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l-----~~~L~~L~l~~N~l~-- 396 (424)
.+++|+.|++++|+++ .+|..+..+.. |++|++++|++++..+..+... .+.|+.|++++|+++
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~--------L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPDLKL--------LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGGCTT--------CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred CCCCCCEEECCCCcCe-ecChhhhcCcc--------CCEEECCCCCCCccChhHccccccccccccccceEeecCccccc
Confidence 6667777777777666 55655655555 7777777776665544444332 135667777777766
Q ss_pred CCCCccccccCCCcccccccCc
Q 036985 397 RCPFSFFFCQGARQKSLVECNR 418 (424)
Q Consensus 397 ~ip~~~~~~~~~l~~l~l~~n~ 418 (424)
.++...+.+...++.+++++|+
T Consensus 310 ~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 310 EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GSCGGGGTTBCCSTTEEC----
T ss_pred ccCcccccccchhhhhhccccc
Confidence 5555555555557777776664
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.6e-33 Score=284.33 Aligned_cols=288 Identities=17% Similarity=0.223 Sum_probs=256.5
Q ss_pred CCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEE
Q 036985 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRL 185 (424)
Q Consensus 106 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 185 (424)
.+++++.+++++|.+....+..+.++++|++|++++|.+++..|..|+.+++|++|+|++|.+.+..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 57889999999999986666678899999999999999998888899999999999999999999888889999999999
Q ss_pred EeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCC
Q 036985 186 EIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLS 262 (424)
Q Consensus 186 ~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 262 (424)
++++|.+++.++. +..+++|++|++++|.+++..+..+. ++|++|++++|.+++.. +..+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 9999999977777 79999999999999999988887776 89999999999998763 566899999999999987
Q ss_pred CCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccC
Q 036985 263 GSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMI 342 (424)
Q Consensus 263 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 342 (424)
+ +...++|+.|++++|.++.++.. ..++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~--------~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGP--------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECS--------CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred c-----ccCCchhheeeccCCcccccccc--------cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCC
Confidence 4 34557899999999999886543 236899999999999974 67899999999999999999999
Q ss_pred chhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccCCC
Q 036985 343 PTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTPV 422 (424)
Q Consensus 343 ~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~~ 422 (424)
|..+..+.+ |++|+|++|++++ +|..+..+ |+|++|++++|.++.+|..+..+.. |+.|++++|++.+.
T Consensus 271 ~~~~~~l~~--------L~~L~Ls~N~l~~-l~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~l~~-L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 271 YHPFVKMQR--------LERLYISNNRLVA-LNLYGQPI-PTLKVLDLSHNHLLHVERNQPQFDR-LENLYLDHNSIVTL 339 (597)
T ss_dssp SGGGTTCSS--------CCEEECTTSCCCE-EECSSSCC-TTCCEEECCSSCCCCCGGGHHHHTT-CSEEECCSSCCCCC
T ss_pred HHHhcCccC--------CCEEECCCCCCCC-CCcccccC-CCCcEEECCCCCCCccCcccccCCC-CCEEECCCCCCCCc
Confidence 999987777 9999999999986 56666677 6999999999999999999877776 99999999999865
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=8.1e-33 Score=261.19 Aligned_cols=291 Identities=22% Similarity=0.274 Sum_probs=188.4
Q ss_pred ceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecc
Q 036985 85 RVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLD 164 (424)
Q Consensus 85 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~ 164 (424)
+++.++++++.++. +|..+. +.+++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 56788888888764 454442 678889999998887666688888999999999998887778888888899999999
Q ss_pred cCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChh
Q 036985 165 YNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPE 243 (424)
Q Consensus 165 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 243 (424)
+|.++ .+|..+. ++|++|++++|.+++..+. +..+++|++|++++|.+... +..+.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~ 165 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS--------------------GIENG 165 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG--------------------GBCTT
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc--------------------CcChh
Confidence 88887 4555443 6888888888888866555 77788888888877776421 12334
Q ss_pred hhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhc
Q 036985 244 SLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMA 323 (424)
Q Consensus 244 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 323 (424)
.+..+++|++|++++|.++. +|..+. ++|++|++++|+++++.... + ..+++|++|++++|.+++..+..+.
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~-~----~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAAS-L----KGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGG-G----TTCTTCCEEECCSSCCCEECTTTGG
T ss_pred hccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHH-h----cCCCCCCEEECCCCcCceeChhhcc
Confidence 45555666666666666652 333332 55666666666665532211 1 3455666666666666655555566
Q ss_pred CCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhh-----ccCCcEEEccCCCCC--
Q 036985 324 LMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLEL-----QPGSANVRLADNCLY-- 396 (424)
Q Consensus 324 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l-----~~~L~~L~l~~N~l~-- 396 (424)
.+++|++|++++|+++ .+|..+..+.. |++|++++|++++..+..|... .+.++.+++++|+++
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~--------L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKY--------IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSS--------CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCC--------cCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 6666666666666665 45555544444 6666666666665444444321 135667777777765
Q ss_pred CCCCccccccCCCcccccccCc
Q 036985 397 RCPFSFFFCQGARQKSLVECNR 418 (424)
Q Consensus 397 ~ip~~~~~~~~~l~~l~l~~n~ 418 (424)
.++...+.|...++.+++++|+
T Consensus 309 ~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 309 EIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GSCGGGGTTCCCGGGEEC----
T ss_pred ccCccccccccceeEEEecccC
Confidence 3555666666667777776664
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=8.8e-33 Score=260.96 Aligned_cols=268 Identities=19% Similarity=0.224 Sum_probs=207.9
Q ss_pred CCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEee
Q 036985 109 YLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQ 188 (424)
Q Consensus 109 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 188 (424)
+++.++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4667777777666 4454333 466667777776665555566666666666666666665556666666666666666
Q ss_pred cccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCC--CcC
Q 036985 189 SNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSG--SVP 266 (424)
Q Consensus 189 ~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~ 266 (424)
+|.++.. +..+.++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+
T Consensus 109 ~n~l~~l------------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 109 KNQLKEL------------------------PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp SSCCSBC------------------------CSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred CCcCCcc------------------------ChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence 6655532 22222567777777777777778889999999999999999964 567
Q ss_pred ccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhH
Q 036985 267 SFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEY 346 (424)
Q Consensus 267 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 346 (424)
..+..+++|++|++++|.+++++.. ..++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~l~~~--------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITTIPQG--------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCSCCSS--------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred hhccCCCCcCEEECCCCccccCCcc--------ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence 7888999999999999999986432 23789999999999998888999999999999999999998888788
Q ss_pred HhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCcccccc------CCCcccccccCccC
Q 036985 347 AIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQ------GARQKSLVECNRFT 420 (424)
Q Consensus 347 ~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~------~~l~~l~l~~n~l~ 420 (424)
..+.+ |++|++++|+++ .+|..+..+ ++|++|++++|+|+.+|...+... ..++.+++.+|++.
T Consensus 237 ~~l~~--------L~~L~L~~N~l~-~lp~~l~~l-~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 237 ANTPH--------LRELHLNNNKLV-KVPGGLADH-KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp GGSTT--------CCEEECCSSCCS-SCCTTTTTC-SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cCCCC--------CCEEECCCCcCc-cCChhhccC-CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 87777 999999999998 789999999 599999999999999998776432 45788999999986
Q ss_pred C
Q 036985 421 P 421 (424)
Q Consensus 421 ~ 421 (424)
.
T Consensus 307 ~ 307 (330)
T 1xku_A 307 Y 307 (330)
T ss_dssp G
T ss_pred c
Confidence 3
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.6e-33 Score=262.52 Aligned_cols=274 Identities=24% Similarity=0.285 Sum_probs=186.0
Q ss_pred CCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEe
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELY 162 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 162 (424)
.++++.|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|..+. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 468999999999999888888999999999999999999878999999999999999999999 5666655 8999999
Q ss_pred cccCcCCCCchhhcCCCCCCcEEEeecccccc--cCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCC
Q 036985 163 LDYNNLEGTIPASFNGLSSLKRLEIQSNKLTG--EFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQG 239 (424)
Q Consensus 163 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~ 239 (424)
+++|.+.+..+..|.++++|++|++++|.++. ..+. +..+ +|++|++++|.+++ ++..+.++|++|++++|.+++
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQA 207 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSCSSCSCCBCCSSCCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccccCCCCEEECCCCcCCc
Confidence 99999997777789999999999999999963 4444 6666 88889998888875 333333555555555555554
Q ss_pred CChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCCh
Q 036985 240 TVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLP 319 (424)
Q Consensus 240 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 319 (424)
..+..+..+++|++|++++|++++..+..+..++ +|++|++++|+++ .+|
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------------------------~L~~L~L~~N~l~-~lp 257 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-----------------------------TLRELHLDNNKLS-RVP 257 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-----------------------------TCCEEECCSSCCC-BCC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-----------------------------CCCEEECCCCcCe-ecC
Confidence 4444455555555555555555544444444444 4555555555544 334
Q ss_pred hhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCc--cccChhhhhhccCCcEEEccCCC
Q 036985 320 LFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLF--GAIPRSLLELQPGSANVRLADNC 394 (424)
Q Consensus 320 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~--~~~p~~~~~l~~~L~~L~l~~N~ 394 (424)
..+..+++|+.|++++|++++..+..|..... ......|+.|++++|.+. +..|..+..+ ++|+.+++++|+
T Consensus 258 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l-~~L~~l~l~~n~ 331 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF--GVKRAYYNGISLFNNPVPYWEVQPATFRCV-TDRLAIQFGNYK 331 (332)
T ss_dssp TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC--CSSSCCBSEEECCSSSSCGGGSCGGGGTTB-CCSTTEEC----
T ss_pred hhhhcCccCCEEECCCCCCCccChhHcccccc--ccccccccceEeecCcccccccCccccccc-chhhhhhccccc
Confidence 44555555555555555555444433332110 011233667777777665 4455556666 377777776663
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.9e-34 Score=268.05 Aligned_cols=254 Identities=28% Similarity=0.387 Sum_probs=214.5
Q ss_pred CCCcEEEccCCCCCC--CcchhcCCCcCCceEEccc-CcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcE
Q 036985 108 PYLETLDLSNNFFSG--SIPESLSNLTRLIRLGLSR-NSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKR 184 (424)
Q Consensus 108 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 184 (424)
.+++.|++++|.+.+ .+|..|.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+.+.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578889999999887 7888888889999999984 8888888888888888888888888888788888888888888
Q ss_pred EEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCC-CCcEEEeeCCcCC
Q 036985 185 LEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLS-YLQVVDLSHNKLS 262 (424)
Q Consensus 185 L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~ 262 (424)
|++++|.+++..+. +..+++|++|++++|.+ ++.+|..+..++ +|++|++++|+++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l----------------------~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRI----------------------SGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCC----------------------EEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcc----------------------cCcCCHHHhhhhhcCcEEECcCCeee
Confidence 88888888866555 66666666666665554 445667777887 9999999999999
Q ss_pred CCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccC
Q 036985 263 GSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMI 342 (424)
Q Consensus 263 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 342 (424)
+.+|..+..++ |++|++++|.+++. .+..+ ..+++|++|++++|.+++.++. +..+++|++|++++|++++.+
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~-~~~~~----~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGD-ASVLF----GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEEC-CGGGC----CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECC
T ss_pred ccCChHHhCCc-ccEEECcCCcccCc-CCHHH----hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcC
Confidence 89999998887 99999999999874 33333 6789999999999999977766 888999999999999999999
Q ss_pred chhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCC-CCCCCC
Q 036985 343 PTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNC-LYRCPF 400 (424)
Q Consensus 343 ~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~-l~~ip~ 400 (424)
|..+..+.+ |++|++++|++++.+|.. ..+ ++|+.+++++|+ +...|.
T Consensus 261 p~~l~~l~~--------L~~L~Ls~N~l~~~ip~~-~~l-~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 261 PQGLTQLKF--------LHSLNVSFNNLCGEIPQG-GNL-QRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CGGGGGCTT--------CCEEECCSSEEEEECCCS-TTG-GGSCGGGTCSSSEEESTTS
T ss_pred ChHHhcCcC--------CCEEECcCCcccccCCCC-ccc-cccChHHhcCCCCccCCCC
Confidence 999998877 999999999999999986 778 599999999997 555553
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-32 Score=281.66 Aligned_cols=327 Identities=19% Similarity=0.169 Sum_probs=232.4
Q ss_pred CCCCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCc
Q 036985 80 VSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLE 159 (424)
Q Consensus 80 ~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 159 (424)
+.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|+++++|+
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~ 151 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 151 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence 56789999999999999988888999999999999999999976777899999999999999999977777899999999
Q ss_pred eEecccCcCCC-CchhhcCCCCCCcEEEeecccccccCCC-CCCC-----------------------------------
Q 036985 160 ELYLDYNNLEG-TIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSL----------------------------------- 202 (424)
Q Consensus 160 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l----------------------------------- 202 (424)
+|++++|.+.+ ..|..+..+++|++|++++|++++..+. +..+
T Consensus 152 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l 231 (635)
T 4g8a_A 152 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 231 (635)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred eeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhh
Confidence 99999999975 4578889999999999999987643321 1100
Q ss_pred --------------------------------------------------------------------------------
Q 036985 203 -------------------------------------------------------------------------------- 202 (424)
Q Consensus 203 -------------------------------------------------------------------------------- 202 (424)
T Consensus 232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l 311 (635)
T 4g8a_A 232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF 311 (635)
T ss_dssp ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred hcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence
Q ss_pred ----------------CCcCEEEccCCcCCCCCCCc---------------------cccCCcEEEcccCcCCC--CChh
Q 036985 203 ----------------KNLYFLDASDNAISGKLPAI---------------------LPTSLVQISMRNNNLQG--TVPE 243 (424)
Q Consensus 203 ----------------~~L~~L~l~~n~l~~~~~~~---------------------~~~~L~~L~l~~n~l~~--~~~~ 243 (424)
..++.|++.+|.+....... -.++++.++++.|.+.. ..+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 312 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp EEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred cccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccccc
Confidence 11222222222222111100 01456666666666542 2233
Q ss_pred hhcCCCCCcEEEeeCCcCC-----------------------CCcC-ccccCCCCCCEEeccCCcCCCCCCCCCCCCCcc
Q 036985 244 SLKLLSYLQVVDLSHNKLS-----------------------GSVP-SFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNI 299 (424)
Q Consensus 244 ~l~~l~~L~~L~Ls~n~l~-----------------------~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 299 (424)
.+....+|+.+++..+... ...+ ..+..+++++.++++.|.+....... . .
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~-~----~ 466 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-F----N 466 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTT-T----T
T ss_pred chhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccc-c----c
Confidence 4444555555555554433 2221 23445566666666666665533222 2 4
Q ss_pred cCCCCcEEEccCCCC-CCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhh
Q 036985 300 FSSQLIAVDISNNEL-QGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSL 378 (424)
Q Consensus 300 ~~~~L~~L~Ls~n~l-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~ 378 (424)
.++.+++|++++|.+ .+..|..+..+++|++|+|++|++++..|..|..+.+ |++|+|++|+|++..|..|
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~--------L~~L~Ls~N~l~~l~~~~~ 538 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS--------LQVLNMSHNNFFSLDTFPY 538 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT--------CCEEECTTSCCCBCCCGGG
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC--------CCEEECCCCcCCCCChhHH
Confidence 567888888888864 3456677888888888888888888888888877666 8888888888888778788
Q ss_pred hhhccCCcEEEccCCCCCCCCCccc-cccCCCcccccccCccC
Q 036985 379 LELQPGSANVRLADNCLYRCPFSFF-FCQGARQKSLVECNRFT 420 (424)
Q Consensus 379 ~~l~~~L~~L~l~~N~l~~ip~~~~-~~~~~l~~l~l~~n~l~ 420 (424)
..+ ++|++|++++|+|+.++...+ ....+|+.+++++|++.
T Consensus 539 ~~l-~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 539 KCL-NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTC-TTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred hCC-CCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 888 488888888888887765544 44456888888888875
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.6e-33 Score=264.05 Aligned_cols=285 Identities=19% Similarity=0.196 Sum_probs=183.4
Q ss_pred ccCCCHhHHHHHHHHHhhCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCcccceeecCC-----CCCCCceeEEEeCC
Q 036985 23 ESKTYWGDIQVMKELKNSLDPNSVSPGSCLSSW----DFSVDPCDSLFSEKFTCGFRCDVS-----VSALSRVTELNLDQ 93 (424)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w----~~~~~~C~~~~~~~~~~~~~c~~~-----~~~~~~l~~L~L~~ 93 (424)
......+|..||.+||..+. .++..+...| ....++|.| .|+.|... ....++++.|++++
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~---~~~~~~~~~w~~~~~~~~~~~~~-------~g~~~~~~~~~l~~~~~~~l~~L~L~~ 90 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYN---ADRNRWHSAWRQANSNNPQIETR-------TGRALKATADLLEDATQPGRVALELRS 90 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHH---HCCTTHHHHHHHHTTTCTTSCCS-------HHHHHHHHHHHHHHHTSTTCCEEEEES
T ss_pred ccccCchHHHHHHHHHHhcc---CCchhhhhhhccccccccccccc-------CCcchhhhHHHHhcccccceeEEEccC
Confidence 44566788999999999873 2344556678 334678887 68888520 01246777888888
Q ss_pred CCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCch
Q 036985 94 AGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIP 173 (424)
Q Consensus 94 ~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 173 (424)
+.++ .+|..+.++++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..++++++|++|++++|++.+.+|
T Consensus 91 n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 91 VPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp SCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred CCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccC
Confidence 7776 56666777777888888877777 67777777777777777777777 667777777777777777776666666
Q ss_pred hhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcE
Q 036985 174 ASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQV 253 (424)
Q Consensus 174 ~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 253 (424)
..+... . + ...+..+++|++|++++|.++ .+|..+..+++|++
T Consensus 168 ~~~~~~------~-----~---~~~~~~l~~L~~L~L~~n~l~-----------------------~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 168 EPLAST------D-----A---SGEHQGLVNLQSLRLEWTGIR-----------------------SLPASIANLQNLKS 210 (328)
T ss_dssp SCSEEE------C---------CCCEEESTTCCEEEEEEECCC-----------------------CCCGGGGGCTTCCE
T ss_pred hhHhhc------c-----c---hhhhccCCCCCEEECcCCCcC-----------------------cchHhhcCCCCCCE
Confidence 544320 0 0 001233444555554444433 34445556666666
Q ss_pred EEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEec
Q 036985 254 VDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSL 333 (424)
Q Consensus 254 L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 333 (424)
|++++|.+++ +|..+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|++.+.+|..+..+++|+.|++
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~----~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN-YPPIF----GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCB-CCCCT----TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhh-hHHHh----cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 6666666663 444566666666666666666552 33323 45666777777777666666766777777777777
Q ss_pred cCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCc
Q 036985 334 ENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLF 371 (424)
Q Consensus 334 ~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~ 371 (424)
++|.+.+.+|..++.+.+ |+.+++..+.+.
T Consensus 285 ~~n~~~~~iP~~l~~L~~--------L~~l~l~~~~~~ 314 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPA--------NCIILVPPHLQA 314 (328)
T ss_dssp TTCTTCCCCCGGGGGSCT--------TCEEECCGGGSC
T ss_pred CCCCchhhccHHHhhccC--------ceEEeCCHHHHH
Confidence 777777777777776666 777777766554
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.98 E-value=6.5e-32 Score=265.41 Aligned_cols=302 Identities=25% Similarity=0.340 Sum_probs=162.9
Q ss_pred CCCCCceeEEEeCCCCCccccCCCcCCCCCC-------------cEEEccCCCCCCCcchhcCCCcCCceEEcccCcccc
Q 036985 80 VSALSRVTELNLDQAGYSGSLSTTSWNLPYL-------------ETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSG 146 (424)
Q Consensus 80 ~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L-------------~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 146 (424)
+++++++++|++++|.+.|.+|..++++++| ++|++++|.+++ +|.. .++|++|++++|.+++
T Consensus 30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~ 105 (454)
T 1jl5_A 30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE 105 (454)
T ss_dssp ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS
T ss_pred HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc
Confidence 3467778888888888887788777777764 888888888774 3431 3678888888888885
Q ss_pred cCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccC
Q 036985 147 EIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTS 226 (424)
Q Consensus 147 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 226 (424)
+|.. +++|++|++++|.+.+ ++.. .++|++|++++|.+++ ++.+..+++|++|++++|++++ ++.. ..+
T Consensus 106 -lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~~-lp~~-~~~ 174 (454)
T 1jl5_A 106 -LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKK-LPDL-PPS 174 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSC-CCCC-CTT
T ss_pred -cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCcc-cCCC-ccc
Confidence 5543 2566667776666653 2211 1567777777777765 3456677777777777777664 2222 246
Q ss_pred CcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCC-------------------CcCccccCCCCCCEEeccCCcCCC
Q 036985 227 LVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSG-------------------SVPSFVFSHPSLQQLTLSFNQFTS 287 (424)
Q Consensus 227 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-------------------~~~~~l~~~~~L~~L~L~~n~l~~ 287 (424)
|++|++++|.+++ +| .++.+++|++|++++|++++ .+|. +..+++|++|++++|++++
T Consensus 175 L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 175 LEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS
T ss_pred ccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc
Confidence 6666666666664 33 45556666666666555553 2332 4444555555555555544
Q ss_pred CCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcc--cCchhHHhhcC----CCC-CCC-CC
Q 036985 288 IQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTG--MIPTEYAIRVA----VPG-PGI-AP 359 (424)
Q Consensus 288 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~~~~----l~~-~~~-~~ 359 (424)
++. ..++|++|++++|.+++ +|. ..++|+.|++++|++++ .+|..+..+.- +.. ... ++
T Consensus 252 l~~---------~~~~L~~L~l~~N~l~~-l~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~ 318 (454)
T 1jl5_A 252 LPD---------LPPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS 318 (454)
T ss_dssp CCS---------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTT
T ss_pred ccc---------cccccCEEECCCCcccc-cCc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCc
Confidence 321 11344444444444443 221 12445555555555554 22211111000 000 011 24
Q ss_pred ccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccCC
Q 036985 360 FQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTP 421 (424)
Q Consensus 360 L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~ 421 (424)
|++|++++|++++ +|.. + ++|++|++++|.++++|. ...+|+.+++++|++++
T Consensus 319 L~~L~Ls~N~l~~-lp~~---~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 319 LEELNVSNNKLIE-LPAL---P-PRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCEEECCSSCCSC-CCCC---C-TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS
T ss_pred CCEEECCCCcccc-cccc---C-CcCCEEECCCCccccccc----hhhhccEEECCCCCCCc
Confidence 5555555555553 4432 2 355555555555555554 12235555555555555
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.98 E-value=1.6e-30 Score=255.46 Aligned_cols=292 Identities=27% Similarity=0.360 Sum_probs=188.3
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
+++++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 578888888888876 4532 3778888888888774 2221 1578888888888885 66 5888888888888
Q ss_pred ccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChh
Q 036985 164 DYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPE 243 (424)
Q Consensus 164 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 243 (424)
++|++++ +|..+ .+|++|++++|.+++ .+.+..+++|++|++++|.+++. +. ...+|++|++++|.++ .+|
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~l-~~-~~~~L~~L~l~~n~l~-~lp- 231 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKKL-PD-LPLSLESIVAGNNILE-ELP- 231 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSSC-CC-CCTTCCEEECCSSCCS-SCC-
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCcC-CC-CcCcccEEECcCCcCC-ccc-
Confidence 8888874 45432 578888888888886 44688888888888888888752 22 2257888888888887 455
Q ss_pred hhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCC--Chhh
Q 036985 244 SLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGM--LPLF 321 (424)
Q Consensus 244 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~ 321 (424)
.+..+++|++|++++|++++ +|.. .++|++|++++|++++++.. .++|++|++++|.+++. .|..
T Consensus 232 ~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~---------~~~L~~L~ls~N~l~~l~~~~~~ 298 (454)
T 1jl5_A 232 ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPEL---------PQSLTFLDVSENIFSGLSELPPN 298 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCSEESCCCTT
T ss_pred ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCcc---------cCcCCEEECcCCccCcccCcCCc
Confidence 37788888888888888874 4432 36777777777777764321 24455555555555431 1110
Q ss_pred -------------hcCC-CCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcE
Q 036985 322 -------------MALM-PKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSAN 387 (424)
Q Consensus 322 -------------l~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~ 387 (424)
+..+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|. .+ ++|++
T Consensus 299 L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~-----------~~~L~~L~L~~N~l~-~lp~---~l-~~L~~ 361 (454)
T 1jl5_A 299 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL-----------PPRLERLIASFNHLA-EVPE---LP-QNLKQ 361 (454)
T ss_dssp CCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC-----------CTTCCEEECCSSCCS-CCCC---CC-TTCCE
T ss_pred CCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc-----------CCcCCEEECCCCccc-cccc---hh-hhccE
Confidence 1122 366777777776664 4432 345999999999998 4776 35 58999
Q ss_pred EEccCCCCCC---CCCcccccc------------CCCcccccccCccCC--CCC
Q 036985 388 VRLADNCLYR---CPFSFFFCQ------------GARQKSLVECNRFTP--VIP 424 (424)
Q Consensus 388 L~l~~N~l~~---ip~~~~~~~------------~~l~~l~l~~n~l~~--~~p 424 (424)
|++++|+++. +|..+..+. .+|+.+++++|++++ .+|
T Consensus 362 L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred EECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 9999999886 566666551 348999999999987 555
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=253.96 Aligned_cols=270 Identities=21% Similarity=0.209 Sum_probs=196.4
Q ss_pred CCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCC
Q 036985 92 DQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGT 171 (424)
Q Consensus 92 ~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~ 171 (424)
+++.++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++.
T Consensus 39 ~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 39 SSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp CSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 4555553 444332 4788888888888865555788888888888888888877777788888888888888888866
Q ss_pred chhhcCCCCCCcEEEeecccccccCC--CCCCCCCcCEEEccCCc-CCCCCCCccc--cCCcEEEcccCcCCCCChhhhc
Q 036985 172 IPASFNGLSSLKRLEIQSNKLTGEFP--ELGSLKNLYFLDASDNA-ISGKLPAILP--TSLVQISMRNNNLQGTVPESLK 246 (424)
Q Consensus 172 ~~~~l~~l~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~n~-l~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~ 246 (424)
.+..+.++++|++|++++|.+++... .+..+++|++|++++|. +.+..+..+. ++|++|++++|.+++..+..+.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 66668888888888888888886665 37788888888888884 5554454554 6788888888888877788888
Q ss_pred CCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCC----CChhhh
Q 036985 247 LLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQG----MLPLFM 322 (424)
Q Consensus 247 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~l 322 (424)
.+++|++|++++|.++...+..+..+++|++|++++|.+++.+...... ......++.++++++.+.+ .+|..+
T Consensus 196 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--GETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred ccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc--ccccchhhccccccccccCcchhhhHHHH
Confidence 8888888888888887433334445788888888888888754332111 1345667788888887765 256667
Q ss_pred cCCCCCCEEeccCCcCcccCchh-HHhhcCCCCCCCCCccEEEccCCcCccccC
Q 036985 323 ALMPKLSALSLENNKFTGMIPTE-YAIRVAVPGPGIAPFQRLLLGGNYLFGAIP 375 (424)
Q Consensus 323 ~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p 375 (424)
..+++|+.|++++|+++ .+|.. +..+.+ |++|++++|.+.+..|
T Consensus 274 ~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~--------L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTS--------LQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HTCTTCCEEECCSSCCC-CCCTTTTTTCTT--------CCEEECCSSCBCCCHH
T ss_pred hcccCCCEEECCCCCCC-ccCHHHHhcCCC--------CCEEEeeCCCccCcCC
Confidence 78888888888888887 45544 355544 8888888888876554
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.4e-33 Score=278.64 Aligned_cols=324 Identities=18% Similarity=0.172 Sum_probs=156.4
Q ss_pred CCceeEEEeCCCCCccc----cCCCcCCCCCCcEEEccCCCCCCCcchhc-CCCc----CCceEEcccCcccc----cCC
Q 036985 83 LSRVTELNLDQAGYSGS----LSTTSWNLPYLETLDLSNNFFSGSIPESL-SNLT----RLIRLGLSRNSFSG----EIP 149 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~----~L~~L~L~~n~i~~----~~p 149 (424)
++++++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|.++. .++
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 34566666666655532 23444555666666666665543322222 1233 46666666665552 335
Q ss_pred ccccCCCcCceEecccCcCCCCchhhc-----CCCCCCcEEEeecccccccC----CC-CCCCCCcCEEEccCCcCCCCC
Q 036985 150 ASIGSLSSLEELYLDYNNLEGTIPASF-----NGLSSLKRLEIQSNKLTGEF----PE-LGSLKNLYFLDASDNAISGKL 219 (424)
Q Consensus 150 ~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~----~~-l~~l~~L~~L~l~~n~l~~~~ 219 (424)
..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+++.. +. +..+++|++|++++|.+++..
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 555556666666666665543322222 12345666666666555422 11 344455666666666554332
Q ss_pred CCccc-------cCCcEEEcccCcCCCC----ChhhhcCCCCCcEEEeeCCcCCCCc-----CccccCCCCCCEEeccCC
Q 036985 220 PAILP-------TSLVQISMRNNNLQGT----VPESLKLLSYLQVVDLSHNKLSGSV-----PSFVFSHPSLQQLTLSFN 283 (424)
Q Consensus 220 ~~~~~-------~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~~~~L~~L~L~~n 283 (424)
...+. ++|++|++++|.++.. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 22221 2566666666655542 2444555566666666666554321 112223555666666666
Q ss_pred cCCCCC---CCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcC-----CCCCCEEeccCCcCcccC----chhHHhhcC
Q 036985 284 QFTSIQ---QPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMAL-----MPKLSALSLENNKFTGMI----PTEYAIRVA 351 (424)
Q Consensus 284 ~l~~~~---~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~N~l~~~~----~~~~~~~~~ 351 (424)
.+++.. .+..+ ..+++|++|++++|.+++..+..+.. .++|++|++++|.+++.. +..+..+.+
T Consensus 267 ~l~~~~~~~l~~~l----~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 267 GITAKGCGDLCRVL----RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp CCCHHHHHHHHHHH----HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHH----hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence 555421 01001 23455555555555554332222221 245555555555555432 222333233
Q ss_pred CCCCCCCCccEEEccCCcCccccChhhhh-----hccCCcEEEccCCCCC-----CCCCccccccCCCcccccccCccC
Q 036985 352 VPGPGIAPFQRLLLGGNYLFGAIPRSLLE-----LQPGSANVRLADNCLY-----RCPFSFFFCQGARQKSLVECNRFT 420 (424)
Q Consensus 352 l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-----l~~~L~~L~l~~N~l~-----~ip~~~~~~~~~l~~l~l~~n~l~ 420 (424)
|++|++++|++++..+..+.. . ++|++|++++|.++ .+|..+..+.. |+.+++++|+++
T Consensus 343 --------L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~l~~N~i~ 411 (461)
T 1z7x_W 343 --------LLELQISNNRLEDAGVRELCQGLGQPG-SVLRVLWLADCDVSDSSCSSLAATLLANHS-LRELDLSNNCLG 411 (461)
T ss_dssp --------CCEEECCSSBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCCHHHHHHHHHHHHHCCC-CCEEECCSSSCC
T ss_pred --------ccEEEccCCccccccHHHHHHHHcCCC-CceEEEECCCCCCChhhHHHHHHHHHhCCC-ccEEECCCCCCC
Confidence 555555555555444443332 2 35555555555555 44544444444 555555555554
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=248.29 Aligned_cols=274 Identities=18% Similarity=0.194 Sum_probs=216.1
Q ss_pred CCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEE
Q 036985 107 LPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLE 186 (424)
Q Consensus 107 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 186 (424)
++.....+.+++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344445788899988 6676655 5899999999999977666899999999999999999988788899999999999
Q ss_pred eecccccccCCC-CCCCCCcCEEEccCCcCCCCCC-Cccc--cCCcEEEcccC-cCCCCChhhhcCCCCCcEEEeeCCcC
Q 036985 187 IQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLP-AILP--TSLVQISMRNN-NLQGTVPESLKLLSYLQVVDLSHNKL 261 (424)
Q Consensus 187 l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~~--~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l 261 (424)
+++|.+++..+. +..+++|++|++++|.+++... ..+. ++|++|++++| .+....+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 999999976666 8899999999999999986554 3443 88999999988 46666677888889999999999998
Q ss_pred CCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhh---cCCCCCCEEeccCCcC
Q 036985 262 SGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFM---ALMPKLSALSLENNKF 338 (424)
Q Consensus 262 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L~~N~l 338 (424)
++..|..+..+++|++|++++|+++.++.. .. ..+++|++|++++|.+++..+..+ ...+.++.++++++.+
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~----~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEI-FV----DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHH-HH----HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred CccCHHHHhccccCCeecCCCCccccchhh-hh----hhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 877788888888999999999888764321 11 346788899999998886544433 2456788888888888
Q ss_pred ccc----CchhHHhhcCCCCCCCCCccEEEccCCcCccccChhh-hhhccCCcEEEccCCCCCCC
Q 036985 339 TGM----IPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSL-LELQPGSANVRLADNCLYRC 398 (424)
Q Consensus 339 ~~~----~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~-~~l~~~L~~L~l~~N~l~~i 398 (424)
.+. +|..+..+.+ |++|++++|+++ .+|..+ ..+ ++|++|++++|+++.-
T Consensus 262 ~~~~l~~l~~~l~~l~~--------L~~L~Ls~N~l~-~i~~~~~~~l-~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 262 TDESLFQVMKLLNQISG--------LLELEFSRNQLK-SVPDGIFDRL-TSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CHHHHHHHHHHHHTCTT--------CCEEECCSSCCC-CCCTTTTTTC-TTCCEEECCSSCBCCC
T ss_pred cCcchhhhHHHHhcccC--------CCEEECCCCCCC-ccCHHHHhcC-CCCCEEEeeCCCccCc
Confidence 763 4555665555 888888888887 566654 677 5888888888887643
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.7e-30 Score=241.27 Aligned_cols=245 Identities=28% Similarity=0.325 Sum_probs=156.9
Q ss_pred EEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCccccc--CCccccCCCcCceEeccc
Q 036985 88 ELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGE--IPASIGSLSSLEELYLDY 165 (424)
Q Consensus 88 ~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~L~~ 165 (424)
.++++++.++. +|..+ .++|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 34444555543 33322 25778888888888744444577888888888888877632 255666778888888888
Q ss_pred CcCCCCchhhcCCCCCCcEEEeecccccccCC--CCCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCC-C
Q 036985 166 NNLEGTIPASFNGLSSLKRLEIQSNKLTGEFP--ELGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQG-T 240 (424)
Q Consensus 166 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~-~ 240 (424)
|.+. .+|..+..+++|++|++++|.+++..+ .+..+++|++|++++|.+.+..+..+. ++|++|++++|.+.+ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 8776 456667778888888888888776654 377777777777777776655544443 555666666665554 3
Q ss_pred ChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChh
Q 036985 241 VPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPL 320 (424)
Q Consensus 241 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 320 (424)
.|..+..+++|++|++++|++++..|..+..+++|++|++++|++++++...+ ..+++|++|++++|.+++..+.
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-----KCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG-----TTCTTCCEEECTTSCCCBCSSS
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc-----cCcccCCEeECCCCCCcccCHH
Confidence 45556666666666666666665555666666666666666666665432221 3456666666666666666665
Q ss_pred hhcCCC-CCCEEeccCCcCccc
Q 036985 321 FMALMP-KLSALSLENNKFTGM 341 (424)
Q Consensus 321 ~l~~l~-~L~~L~L~~N~l~~~ 341 (424)
.+..++ +|++|++++|.+++.
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEECS
T ss_pred HHHhhhccCCEEEccCCCeecc
Confidence 566653 666666666666543
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-29 Score=237.17 Aligned_cols=248 Identities=19% Similarity=0.190 Sum_probs=188.7
Q ss_pred cEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCC--chhhcCCCCCCcEEEee
Q 036985 111 ETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGT--IPASFNGLSSLKRLEIQ 188 (424)
Q Consensus 111 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~ 188 (424)
+.++.+++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57888888887 5665543 6899999999999955555689999999999999998843 36677789999999999
Q ss_pred cccccccCCCCCCCCCcCEEEccCCcCCCCCC-Cccc--cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCC-C
Q 036985 189 SNKLTGEFPELGSLKNLYFLDASDNAISGKLP-AILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSG-S 264 (424)
Q Consensus 189 ~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~ 264 (424)
+|.+.+....+..+++|++|++++|.+++..+ ..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 99998765558889999999999998886654 2333 778888888888777777777777888888888887775 4
Q ss_pred cCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCch
Q 036985 265 VPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPT 344 (424)
Q Consensus 265 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 344 (424)
.|..+..+++|++|++++|+++++.... + ..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+.
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTA-F----NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTT-T----TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHH-h----cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 6677777778888888888777743322 2 4567777888888877766666677777788888888877777666
Q ss_pred hHHhhcCCCCCCCCCccEEEccCCcCccc
Q 036985 345 EYAIRVAVPGPGIAPFQRLLLGGNYLFGA 373 (424)
Q Consensus 345 ~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~ 373 (424)
.+..+. ++|++|++++|.+++.
T Consensus 242 ~~~~~~-------~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 242 ELQHFP-------SSLAFLNLTQNDFACT 263 (306)
T ss_dssp SCCCCC-------TTCCEEECTTCCEECS
T ss_pred HHHhhh-------ccCCEEEccCCCeecc
Confidence 665542 1277777877777654
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.9e-32 Score=270.52 Aligned_cols=334 Identities=16% Similarity=0.101 Sum_probs=256.6
Q ss_pred CceeEEEeCCCCCccccCC-CcCCCCCCcEEEccCCCCCC----CcchhcCCCcCCceEEcccCcccccCCcccc-CCC-
Q 036985 84 SRVTELNLDQAGYSGSLST-TSWNLPYLETLDLSNNFFSG----SIPESLSNLTRLIRLGLSRNSFSGEIPASIG-SLS- 156 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~-~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~-~l~- 156 (424)
+++++|+++++.++..... .+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 6799999999999765433 36789999999999999984 3467788899999999999999864443332 344
Q ss_pred ---cCceEecccCcCCC----CchhhcCCCCCCcEEEeecccccccCCC------CCCCCCcCEEEccCCcCCCCCCCcc
Q 036985 157 ---SLEELYLDYNNLEG----TIPASFNGLSSLKRLEIQSNKLTGEFPE------LGSLKNLYFLDASDNAISGKLPAIL 223 (424)
Q Consensus 157 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~------l~~l~~L~~L~l~~n~l~~~~~~~~ 223 (424)
+|++|++++|.+.. .++..+..+++|++|++++|.+++..+. ....++|++|++++|.+++.....+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999984 4588899999999999999998753322 3346789999999999886543222
Q ss_pred ----c--cCCcEEEcccCcCCCCChhhhc-----CCCCCcEEEeeCCcCCCC----cCccccCCCCCCEEeccCCcCCCC
Q 036985 224 ----P--TSLVQISMRNNNLQGTVPESLK-----LLSYLQVVDLSHNKLSGS----VPSFVFSHPSLQQLTLSFNQFTSI 288 (424)
Q Consensus 224 ----~--~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~ 288 (424)
. ++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 2 7999999999998765444443 367999999999999864 466777889999999999998763
Q ss_pred CCCCCCCCCcccCCCCcEEEccCCCCCCC----ChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEE
Q 036985 289 QQPAPTNDNNIFSSQLIAVDISNNELQGM----LPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLL 364 (424)
Q Consensus 289 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~ 364 (424)
............+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..... ...++|++|+
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~---~~~~~L~~L~ 319 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL---EPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT---STTCCCCEEE
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc---cCCccceeeE
Confidence 21100000002468999999999999864 5677888999999999999998776666665421 0123599999
Q ss_pred ccCCcCccc----cChhhhhhccCCcEEEccCCCCCCC-CCccc----cccCCCcccccccCccCC
Q 036985 365 LGGNYLFGA----IPRSLLELQPGSANVRLADNCLYRC-PFSFF----FCQGARQKSLVECNRFTP 421 (424)
Q Consensus 365 Ls~N~l~~~----~p~~~~~l~~~L~~L~l~~N~l~~i-p~~~~----~~~~~l~~l~l~~n~l~~ 421 (424)
+++|.+++. ++..+..+ ++|++|++++|.+++. +..+. .....|+++++++|+++.
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQN-RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHC-SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred cCCCCCchHHHHHHHHHHhhC-CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 999999876 56667777 5999999999999754 22222 223459999999999874
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.1e-28 Score=242.93 Aligned_cols=226 Identities=24% Similarity=0.234 Sum_probs=116.0
Q ss_pred ceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecc
Q 036985 85 RVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLD 164 (424)
Q Consensus 85 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~ 164 (424)
+++.|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 45555555555555555555555555555555555554444555555555555555555554444445555555555555
Q ss_pred cCcCCCCchhhcCCCCCCcEEEeecc-cccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCCh
Q 036985 165 YNNLEGTIPASFNGLSSLKRLEIQSN-KLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVP 242 (424)
Q Consensus 165 ~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~ 242 (424)
+|.+....+..|.++++|++|++++| .+....+. +..+++|++|++++|.+++..
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----------------------- 212 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP----------------------- 212 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-----------------------
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-----------------------
Confidence 55555444444555555555555552 22222222 445555555555555554321
Q ss_pred hhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhh
Q 036985 243 ESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFM 322 (424)
Q Consensus 243 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l 322 (424)
.+..+++|++|++++|.+++..|..+..+++|++|++++|+++++....+ ..+++|++|+|++|++++..+..+
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF-----DGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT-----TTCTTCCEEECCSSCCSCCCTTSS
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh-----cCCCCCCEEECCCCcCCccChHHh
Confidence 24445555555555555554445555555555555555555554332221 344555555555555554444455
Q ss_pred cCCCCCCEEeccCCcCc
Q 036985 323 ALMPKLSALSLENNKFT 339 (424)
Q Consensus 323 ~~l~~L~~L~L~~N~l~ 339 (424)
..+++|+.|+|++|.+.
T Consensus 287 ~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEccCCCcC
Confidence 55555555555555544
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.6e-29 Score=236.66 Aligned_cols=239 Identities=20% Similarity=0.276 Sum_probs=200.8
Q ss_pred CCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEE
Q 036985 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRL 185 (424)
Q Consensus 106 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 185 (424)
..++++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578889999999888 67777888888999999988888 78888888888888888888887 677788888888888
Q ss_pred EeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCC
Q 036985 186 EIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGS 264 (424)
Q Consensus 186 ~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 264 (424)
++++|.+.+..+. +.. . ..+..+..+++|++|++++|+++ .
T Consensus 156 ~L~~n~~~~~~p~~~~~----------------------------~---------~~~~~~~~l~~L~~L~L~~n~l~-~ 197 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS----------------------------T---------DASGEHQGLVNLQSLRLEWTGIR-S 197 (328)
T ss_dssp EEEEETTCCCCCSCSEE----------------------------E---------C-CCCEEESTTCCEEEEEEECCC-C
T ss_pred ECCCCCCccccChhHhh----------------------------c---------cchhhhccCCCCCEEECcCCCcC-c
Confidence 8888766554443 111 0 11224677899999999999999 7
Q ss_pred cCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCch
Q 036985 265 VPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPT 344 (424)
Q Consensus 265 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 344 (424)
+|..+..+++|++|++++|++++++. .+ ..+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|.
T Consensus 198 lp~~l~~l~~L~~L~L~~N~l~~l~~--~l----~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 198 LPASIANLQNLKSLKIRNSPLSALGP--AI----HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CCGGGGGCTTCCEEEEESSCCCCCCG--GG----GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred chHhhcCCCCCCEEEccCCCCCcCch--hh----ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 88889999999999999999997543 23 6789999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCC
Q 036985 345 EYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPF 400 (424)
Q Consensus 345 ~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~ 400 (424)
.+..+.+ |++|+|++|.+.+.+|..+.++ ++|+.+++..|.+..++.
T Consensus 272 ~~~~l~~--------L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 272 DIHRLTQ--------LEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp TGGGCTT--------CCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC---
T ss_pred hhhcCCC--------CCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHHHHHhh
Confidence 9988777 9999999999999999999999 599999999998877654
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.5e-28 Score=242.01 Aligned_cols=247 Identities=19% Similarity=0.146 Sum_probs=207.2
Q ss_pred eEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccC
Q 036985 87 TELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYN 166 (424)
Q Consensus 87 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 166 (424)
+.++.++..++. +|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+|++|
T Consensus 57 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 455666666663 454443 68999999999999888889999999999999999999888889999999999999999
Q ss_pred cCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhh
Q 036985 167 NLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESL 245 (424)
Q Consensus 167 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 245 (424)
.++...+..|..+++|++|++++|.+++..+. +..+++|+.|++++|... ....+..+
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l---------------------~~i~~~~~ 192 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL---------------------EYISEGAF 192 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC---------------------CEECTTTT
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc---------------------cccChhhc
Confidence 99977777899999999999999999977665 888889998888875322 21233467
Q ss_pred cCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCC
Q 036985 246 KLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALM 325 (424)
Q Consensus 246 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 325 (424)
..+++|++|++++|++++ +| .+..+++|++|++++|.++++....+ ..+++|++|++++|++++..+..+..+
T Consensus 193 ~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSF-----HGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp TTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGG-----TTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccc-----cCccCCCEEEeCCCcCceECHHHhcCC
Confidence 788999999999999985 44 47889999999999999998644332 578899999999999999889999999
Q ss_pred CCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCcc
Q 036985 326 PKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFG 372 (424)
Q Consensus 326 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~ 372 (424)
++|+.|+|++|++++..+..+..+.+ |++|+|++|.+.-
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~--------L~~L~L~~Np~~C 304 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRY--------LVELHLHHNPWNC 304 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTT--------CCEEECCSSCEEC
T ss_pred CCCCEEECCCCcCCccChHHhccccC--------CCEEEccCCCcCC
Confidence 99999999999999776666666666 9999999998753
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.2e-28 Score=227.64 Aligned_cols=256 Identities=21% Similarity=0.206 Sum_probs=190.5
Q ss_pred eeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEeccc
Q 036985 86 VTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDY 165 (424)
Q Consensus 86 l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~ 165 (424)
-+.+++++++++. +|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 13 ~~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 3678888888874 34333 46899999999999876667888999999999999999877788888899999999999
Q ss_pred Cc-CCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChh
Q 036985 166 NN-LEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPE 243 (424)
Q Consensus 166 n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 243 (424)
|. +....+..+..+++|++|++++|.+++..+. +..+++|++|++++|.+++ ..+.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~ 147 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA----------------------LPDD 147 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----------------------CCTT
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc----------------------cCHh
Confidence 87 7766677888888888888888888766555 6677777777776665543 3344
Q ss_pred hhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhc
Q 036985 244 SLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMA 323 (424)
Q Consensus 244 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 323 (424)
.+..+++|++|++++|++++..+..+..+++|++|++++|.++++... .+ ..+++|++|++++|.+++..+..+.
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~----~~l~~L~~L~l~~n~l~~~~~~~~~ 222 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-AF----RDLGRLMTLYLFANNLSALPTEALA 222 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TT----TTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh-Hc----cCcccccEeeCCCCcCCcCCHHHcc
Confidence 566778888888888888755555677788888888888888775332 22 5677888888888888877777788
Q ss_pred CCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhh
Q 036985 324 LMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLE 380 (424)
Q Consensus 324 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 380 (424)
.+++|+.|++++|.+....+.. ..... ++.+..+.+.+....|..+.+
T Consensus 223 ~l~~L~~L~l~~N~~~c~~~~~-~~~~~--------l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 223 PLRALQYLRLNDNPWVCDCRAR-PLWAW--------LQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp TCTTCCEEECCSSCEECSGGGH-HHHHH--------HHHCCSEECCCBEEESGGGTT
T ss_pred cCcccCEEeccCCCccCCCCcH-HHHHH--------HHhcccccCccccCCchHhCC
Confidence 8888888888888887654432 11112 555667777777777776644
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=239.63 Aligned_cols=243 Identities=22% Similarity=0.199 Sum_probs=149.7
Q ss_pred EEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCc
Q 036985 88 ELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNN 167 (424)
Q Consensus 88 ~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~ 167 (424)
.++.++..++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4444444554 2333332 456666666666665555566666666666666666665555566666666666666666
Q ss_pred CCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCC-Cccc--cCCcEEEcccCcCCCCChh
Q 036985 168 LEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLP-AILP--TSLVQISMRNNNLQGTVPE 243 (424)
Q Consensus 168 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~~--~~L~~L~l~~n~l~~~~~~ 243 (424)
++...+..|..+++|++|++++|.+++..+. +..+++|++|++++|...+.++ ..+. ++|++|++++|.++.. |
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-
Confidence 6655445566666666666666666655443 6666666666666633222222 2232 5666666666666532 2
Q ss_pred hhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhc
Q 036985 244 SLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMA 323 (424)
Q Consensus 244 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 323 (424)
.+..+++|++|++++|++++..|..+..+++|++|++++|+++++....+ ..+++|++|+|++|++++..+..+.
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF-----DNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS-----TTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh-----cCCCCCCEEECCCCCCCccChhHhc
Confidence 35667777777777777776666677777777777777777776543322 4567777777777777766666677
Q ss_pred CCCCCCEEeccCCcCcc
Q 036985 324 LMPKLSALSLENNKFTG 340 (424)
Q Consensus 324 ~l~~L~~L~L~~N~l~~ 340 (424)
.+++|+.|+|++|.+.-
T Consensus 277 ~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWNC 293 (440)
T ss_dssp SCTTCCEEECCSSCEEC
T ss_pred cccCCCEEEcCCCCccC
Confidence 77777777777776653
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=2.2e-28 Score=247.80 Aligned_cols=260 Identities=30% Similarity=0.358 Sum_probs=215.9
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
.+++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46899999999998 5666554 89999999999998 5565 5789999999999998 4665 6799999999
Q ss_pred ccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChh
Q 036985 164 DYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPE 243 (424)
Q Consensus 164 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 243 (424)
++|.+++ +|. .+++|++|++++|.+++.+. .+++|++|++++|.+++.. . ...+|+.|++++|.+++ +|
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~-~-~~~~L~~L~L~~N~l~~-l~- 177 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLP-A-LPSELCKLWAYNNQLTS-LP- 177 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC-C-CCTTCCEEECCSSCCSC-CC-
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCcC-C-ccCCCCEEECCCCCCCC-Cc-
Confidence 9999985 444 67899999999999996544 3489999999999998643 2 34789999999999996 44
Q ss_pred hhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhc
Q 036985 244 SLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMA 323 (424)
Q Consensus 244 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 323 (424)
..+++|+.|++++|.+++ +|.. .++|+.|++++|.++.++. .+++|++|++++|++++ +| .
T Consensus 178 --~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~~---------~~~~L~~L~Ls~N~L~~-lp---~ 238 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA---------LPSGLKELIVSGNRLTS-LP---V 238 (622)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCCC---------CCTTCCEEECCSSCCSC-CC---C
T ss_pred --ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccccCC---------CCCCCCEEEccCCccCc-CC---C
Confidence 557899999999999985 4443 4789999999999997542 24789999999999996 44 5
Q ss_pred CCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCC
Q 036985 324 LMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRC 398 (424)
Q Consensus 324 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~i 398 (424)
.+++|+.|++++|.++ .+|. .+. +|++|+|++|+|+ .+|..+.++ ++|+.|++++|+++..
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~---~~~--------~L~~L~Ls~N~L~-~lp~~l~~l-~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM---LPS--------GLLSLSVYRNQLT-RLPESLIHL-SSETTVNLEGNPLSER 299 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC---CCT--------TCCEEECCSSCCC-SCCGGGGGS-CTTCEEECCSCCCCHH
T ss_pred CCCcCcEEECCCCCCC-cCCc---ccc--------cCcEEeCCCCCCC-cCCHHHhhc-cccCEEEecCCCCCCc
Confidence 6789999999999998 4554 233 4999999999998 789999999 5999999999999843
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.8e-28 Score=239.25 Aligned_cols=229 Identities=22% Similarity=0.197 Sum_probs=203.0
Q ss_pred CCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEe
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELY 162 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 162 (424)
.++++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 36799999999999988889999999999999999999987788999999999999999999977677899999999999
Q ss_pred cccCcCCCCchhhcCCCCCCcEEEeeccc-ccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCC
Q 036985 163 LDYNNLEGTIPASFNGLSSLKRLEIQSNK-LTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGT 240 (424)
Q Consensus 163 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~ 240 (424)
+++|.+....+..|.++++|++|++++|. +....+. +..+++|++|++++|.++........++|++|++++|.+++.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence 99999997777789999999999999954 4444443 899999999999999998554322228999999999999998
Q ss_pred ChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCC
Q 036985 241 VPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQG 316 (424)
Q Consensus 241 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 316 (424)
.+..|..+++|++|++++|++++..+..+..+++|++|++++|++++++...+ ..+++|++|++++|.+..
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF-----TPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT-----SSCTTCCEEECCSSCEEC
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh-----ccccCCCEEEcCCCCccC
Confidence 89999999999999999999998888899999999999999999998654433 567999999999998753
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=8.8e-31 Score=245.76 Aligned_cols=260 Identities=22% Similarity=0.217 Sum_probs=157.5
Q ss_pred ceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecc
Q 036985 85 RVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLD 164 (424)
Q Consensus 85 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~ 164 (424)
+++..+++.+.+.......+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45556666666654444445556667777777777766666667777777777777777664433 6666677777777
Q ss_pred cCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhh
Q 036985 165 YNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPES 244 (424)
Q Consensus 165 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 244 (424)
+|.+++.. ..++|++|++++|.+++..+. .++ +|++|++++|.+++..+..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~--~~~----------------------~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCS--RGQ----------------------GKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC--CCS----------------------SCEEEECCSSCCCSGGGBC
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCcc--ccC----------------------CCCEEECCCCCCCCccchh
Confidence 66665321 225666666666665543322 133 4555555555555444555
Q ss_pred hcCCCCCcEEEeeCCcCCCCcCcccc-CCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhc
Q 036985 245 LKLLSYLQVVDLSHNKLSGSVPSFVF-SHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMA 323 (424)
Q Consensus 245 l~~l~~L~~L~Ls~n~l~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 323 (424)
+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++++.. ..+++|++|++++|.+++..+ .+.
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~l~~L~~L~Ls~N~l~~l~~-~~~ 211 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-------VVFAKLKTLDLSSNKLAFMGP-EFQ 211 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-------CCCTTCCEEECCSSCCCEECG-GGG
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-------cccccCCEEECCCCcCCcchh-hhc
Confidence 66666777777777776655554443 566777777777776665322 235667777777777764433 366
Q ss_pred CCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCc-cccChhhhhhccCCcEEEccCC
Q 036985 324 LMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLF-GAIPRSLLELQPGSANVRLADN 393 (424)
Q Consensus 324 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~-~~~p~~~~~l~~~L~~L~l~~N 393 (424)
.+++|+.|++++|+++ .+|..+..+.+ |+.|++++|.+. +.+|..+..+ ++|+.+++++|
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~--------L~~L~l~~N~~~~~~~~~~~~~~-~~L~~l~l~~~ 272 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQN--------LEHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTV 272 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTT--------CCEEECTTCCCBHHHHHHHHHTC-HHHHHHHHHHH
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCC--------CCEEEccCCCccCcCHHHHHhcc-ccceEEECCCc
Confidence 6777777777777776 34554444444 777777777776 5566666666 46666666633
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=9.2e-29 Score=228.46 Aligned_cols=204 Identities=25% Similarity=0.241 Sum_probs=157.6
Q ss_pred CCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCc-ccccCCccccCCCcCceE
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNS-FSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~p~~~~~l~~L~~L 161 (424)
.+++++|+++++.+++..+..+..+++|++|++++|.+++..+..|.++++|++|++++|. +....|..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4689999999999998888889999999999999999997778899999999999999997 886668899999999999
Q ss_pred ecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCC
Q 036985 162 YLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQ 238 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~ 238 (424)
++++|.+.+..+..+.++++|++|++++|.+++..+. +..+++|++|++++|.+++..+..+. ++|++|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 9999999988888999999999999999999977766 88899999999998888754443333 45555555555555
Q ss_pred CCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCC
Q 036985 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFT 286 (424)
Q Consensus 239 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 286 (424)
+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 444445555555555555555555433334444445555555554443
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=3.9e-27 Score=238.63 Aligned_cols=261 Identities=26% Similarity=0.337 Sum_probs=217.5
Q ss_pred CCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEe
Q 036985 108 PYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEI 187 (424)
Q Consensus 108 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 187 (424)
..++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35899999999998 6777665 79999999999999 5665 5789999999999998 4555 7799999999
Q ss_pred ecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCc
Q 036985 188 QSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPS 267 (424)
Q Consensus 188 ~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 267 (424)
++|.+++... .+++|+.|++++|.+++. +.. .++|++|++++|.+++. |. ..++|+.|++++|.+++ +|
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~l-p~~-l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~- 177 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSL-PVL-PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP- 177 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSCC-CCC-CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC-
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCcC-CCC-CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc-
Confidence 9999997544 678999999999999864 333 38999999999999854 33 35789999999999995 55
Q ss_pred cccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHH
Q 036985 268 FVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYA 347 (424)
Q Consensus 268 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 347 (424)
..+++|+.|++++|.+++++. ..++|+.|++++|.++.. |. .+++|+.|++++|.+++ +|.
T Consensus 178 --~~~~~L~~L~Ls~N~l~~l~~---------~~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~-lp~--- 238 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLASLPT---------LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTS-LPV--- 238 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSC-CCC---
T ss_pred --ccCCCCcEEECCCCCCCCCCC---------ccchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCc-CCC---
Confidence 457899999999999998542 247899999999999953 43 35899999999999986 552
Q ss_pred hhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCccccccCCCcccccccCccCCCC
Q 036985 348 IRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRFTPVI 423 (424)
Q Consensus 348 ~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l~~~~ 423 (424)
.+++|++|++++|+|+ .+|. .+ ++|++|++++|.|+.+|..+..+.. |+.+++++|++++.+
T Consensus 239 --------~l~~L~~L~Ls~N~L~-~lp~---~~-~~L~~L~Ls~N~L~~lp~~l~~l~~-L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 239 --------LPSELKELMVSGNRLT-SLPM---LP-SGLLSLSVYRNQLTRLPESLIHLSS-ETTVNLEGNPLSERT 300 (622)
T ss_dssp --------CCTTCCEEECCSSCCS-CCCC---CC-TTCCEEECCSSCCCSCCGGGGGSCT-TCEEECCSCCCCHHH
T ss_pred --------CCCcCcEEECCCCCCC-cCCc---cc-ccCcEEeCCCCCCCcCCHHHhhccc-cCEEEecCCCCCCcC
Confidence 2344999999999998 5776 44 5999999999999999998887776 999999999998754
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=2.4e-30 Score=242.21 Aligned_cols=84 Identities=25% Similarity=0.237 Sum_probs=37.0
Q ss_pred CCcCCceEEcccCcccccCCccc--cCCCcCceEecccCcCCCCchhhcCCC-----CCCcEEEeecccccccCCC-CCC
Q 036985 130 NLTRLIRLGLSRNSFSGEIPASI--GSLSSLEELYLDYNNLEGTIPASFNGL-----SSLKRLEIQSNKLTGEFPE-LGS 201 (424)
Q Consensus 130 ~l~~L~~L~L~~n~i~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~-l~~ 201 (424)
++++|++|++++|.+++..|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..+. +..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 34444444444444444444433 4444444444444444433 3333333 4444444444444433322 444
Q ss_pred CCCcCEEEccCCc
Q 036985 202 LKNLYFLDASDNA 214 (424)
Q Consensus 202 l~~L~~L~l~~n~ 214 (424)
+++|++|++++|+
T Consensus 172 l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 172 FPALSTLDLSDNP 184 (312)
T ss_dssp CSSCCEEECCSCT
T ss_pred CCCCCEEECCCCC
Confidence 4444444444443
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=4.8e-30 Score=240.75 Aligned_cols=264 Identities=19% Similarity=0.163 Sum_probs=190.1
Q ss_pred CcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeec
Q 036985 110 LETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQS 189 (424)
Q Consensus 110 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 189 (424)
++..+++.+.+.......+..+++|++|++++|.+++..|..|.++++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4445555665553344445566677777777777776655667777777777777777764433 66667777777777
Q ss_pred ccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccc
Q 036985 190 NKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFV 269 (424)
Q Consensus 190 n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 269 (424)
|.+++..+ .+ +|++|++++|.+++..+. .+++|++|++++|++++..+..+
T Consensus 90 n~l~~l~~----~~----------------------~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~ 140 (317)
T 3o53_A 90 NYVQELLV----GP----------------------SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE 140 (317)
T ss_dssp SEEEEEEE----CT----------------------TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT
T ss_pred CccccccC----CC----------------------CcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh
Confidence 76664321 14 445555555555443322 36789999999999998777788
Q ss_pred cCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhh
Q 036985 270 FSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIR 349 (424)
Q Consensus 270 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~ 349 (424)
..+++|++|++++|.++++....+. ..+++|++|++++|.+++. +. ...+++|++|++++|++++. |..+..+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~----~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l 213 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELA----ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSA 213 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGG----GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGG
T ss_pred hccCCCCEEECCCCCCCcccHHHHh----hccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhccc
Confidence 8999999999999999986544332 4578999999999999865 32 34589999999999999964 4457777
Q ss_pred cCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCC--CCCCccccccCCCcccccc-cCccCCC
Q 036985 350 VAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLY--RCPFSFFFCQGARQKSLVE-CNRFTPV 422 (424)
Q Consensus 350 ~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~--~ip~~~~~~~~~l~~l~l~-~n~l~~~ 422 (424)
.+ |++|++++|+++ .+|..+..+ ++|++|++++|+++ .+|..+..+.. ++.++++ ++.+.+.
T Consensus 214 ~~--------L~~L~L~~N~l~-~l~~~~~~l-~~L~~L~l~~N~~~~~~~~~~~~~~~~-L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 214 AG--------VTWISLRNNKLV-LIEKALRFS-QNLEHFDLRGNGFHCGTLRDFFSKNQR-VQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TT--------CSEEECTTSCCC-EECTTCCCC-TTCCEEECTTCCCBHHHHHHHHHTCHH-HHHHHHHHHHHHHSS
T ss_pred Cc--------ccEEECcCCccc-chhhHhhcC-CCCCEEEccCCCccCcCHHHHHhcccc-ceEEECCCchhccCC
Confidence 77 999999999998 578888888 59999999999998 55555555444 7777776 4444443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.9e-29 Score=236.18 Aligned_cols=202 Identities=24% Similarity=0.282 Sum_probs=88.9
Q ss_pred CCCCCcEEEeecccccccCCC-C--CCCCCcCEEEccCCcCCCCCCCccc-------cCCcEEEcccCcCCCCChhhhcC
Q 036985 178 GLSSLKRLEIQSNKLTGEFPE-L--GSLKNLYFLDASDNAISGKLPAILP-------TSLVQISMRNNNLQGTVPESLKL 247 (424)
Q Consensus 178 ~l~~L~~L~l~~n~l~~~~~~-l--~~l~~L~~L~l~~n~l~~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~l~~ 247 (424)
++++|++|++++|.+++..+. + ..+++|++|++++|.+++. +..+. ++|++|++++|++++..+..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 344455555555544443333 2 4444444444444444433 22111 34444444444444444445555
Q ss_pred CCCCcEEEeeCCcCCCC--cCccc--cCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCCh-hhh
Q 036985 248 LSYLQVVDLSHNKLSGS--VPSFV--FSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLP-LFM 322 (424)
Q Consensus 248 l~~L~~L~Ls~n~l~~~--~~~~l--~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l 322 (424)
+++|++|++++|++.+. .+..+ ..+++|++|++++|++++++.... .....+++|++|++++|.+++..| ..+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS--ALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH--HHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH--HHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 55555555555554432 12222 444555555555555543211000 000123445555555555544332 223
Q ss_pred cCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCC
Q 036985 323 ALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLY 396 (424)
Q Consensus 323 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~ 396 (424)
..+++|++|++++|+++ .+|..+. .+ |++|++++|++++. |. +..+ ++|++|++++|+|+
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~--------L~~L~Ls~N~l~~~-p~-~~~l-~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLP--AK--------LSVLDLSYNRLDRN-PS-PDEL-PQVGNLSLKGNPFL 309 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCC--SE--------EEEEECCSSCCCSC-CC-TTTS-CEEEEEECTTCTTT
T ss_pred hhcCCCCEEECCCCccC-hhhhhcc--CC--------ceEEECCCCCCCCC-hh-HhhC-CCCCEEeccCCCCC
Confidence 33445555555555554 3343322 22 55555555555433 33 4444 35555555555544
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.6e-28 Score=243.47 Aligned_cols=234 Identities=23% Similarity=0.229 Sum_probs=160.6
Q ss_pred CCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccC
Q 036985 133 RLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASD 212 (424)
Q Consensus 133 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~ 212 (424)
+|++|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 45555555555554444455555555555555555543333 5555555555555555554322 15566666666
Q ss_pred CcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCcccc-CCCCCCEEeccCCcCCCCCCC
Q 036985 213 NAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVF-SHPSLQQLTLSFNQFTSIQQP 291 (424)
Q Consensus 213 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~ 291 (424)
|.+++..+..+ ++|+.|++++|.+++..+..++.+++|+.|++++|.+++..|..+. .+++|++|++++|.+++++..
T Consensus 109 N~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~ 187 (487)
T 3oja_A 109 NNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187 (487)
T ss_dssp SCCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC
T ss_pred CcCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc
Confidence 66655444322 5677777777887777777788888899999999988877777765 688899999999988876332
Q ss_pred CCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCc
Q 036985 292 APTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLF 371 (424)
Q Consensus 292 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~ 371 (424)
..+++|++|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+.. |+.|++++|.+.
T Consensus 188 -------~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~--------L~~L~l~~N~l~ 250 (487)
T 3oja_A 188 -------VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQN--------LEHFDLRGNGFH 250 (487)
T ss_dssp -------CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTT--------CCEEECTTCCBC
T ss_pred -------ccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCC--------CCEEEcCCCCCc
Confidence 346889999999999886554 48888899999999998885 5666655544 899999999887
Q ss_pred -cccChhhhhhccCCcEEEcc
Q 036985 372 -GAIPRSLLELQPGSANVRLA 391 (424)
Q Consensus 372 -~~~p~~~~~l~~~L~~L~l~ 391 (424)
+.+|..+..+ +.|+.++++
T Consensus 251 c~~~~~~~~~l-~~L~~l~~~ 270 (487)
T 3oja_A 251 CGTLRDFFSKN-QRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHTTC-HHHHHHHHH
T ss_pred CcchHHHHHhC-CCCcEEecc
Confidence 6677777777 477777775
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=4.9e-26 Score=208.46 Aligned_cols=216 Identities=21% Similarity=0.241 Sum_probs=155.7
Q ss_pred CCCCCCCCCCCcccceeecCCCCCCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEE
Q 036985 59 VDPCDSLFSEKFTCGFRCDVSVSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLG 138 (424)
Q Consensus 59 ~~~C~~~~~~~~~~~~~c~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 138 (424)
.+.|.| .|..|.+ ..+.+.++++++.++. +|..+. +.+++|++++|.+++..+..|.++++|++|+
T Consensus 2 ~~~C~~-------~~~~C~c----~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 67 (270)
T 2o6q_A 2 EALCKK-------DGGVCSC----NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY 67 (270)
T ss_dssp CCCBGG-------GTCSBEE----ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEE
T ss_pred CccCCC-------CCCCCEe----CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEE
Confidence 356877 6777765 2457899999999985 555443 6799999999999977677899999999999
Q ss_pred cccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCC
Q 036985 139 LSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISG 217 (424)
Q Consensus 139 L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~ 217 (424)
+++|.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+. +..+++|++|++++|.+++
T Consensus 68 l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp CCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc
Confidence 999999966666678899999999999999877777788889999999999988877666 7788888888888777764
Q ss_pred CCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCC
Q 036985 218 KLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDN 297 (424)
Q Consensus 218 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 297 (424)
..+ ..+..+++|++|++++|++++..+..+..+++|++|++++|++++++...+
T Consensus 148 ~~~----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---- 201 (270)
T 2o6q_A 148 LPK----------------------GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF---- 201 (270)
T ss_dssp CCT----------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT----
T ss_pred cCH----------------------hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh----
Confidence 433 334455556666666665554444445555666666666666555432221
Q ss_pred cccCCCCcEEEccCCCCC
Q 036985 298 NIFSSQLIAVDISNNELQ 315 (424)
Q Consensus 298 ~~~~~~L~~L~Ls~n~l~ 315 (424)
..+++|++|++++|.+.
T Consensus 202 -~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 202 -DSLEKLKMLQLQENPWD 218 (270)
T ss_dssp -TTCTTCCEEECCSSCBC
T ss_pred -ccccCCCEEEecCCCee
Confidence 34555666666666554
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-27 Score=236.73 Aligned_cols=237 Identities=22% Similarity=0.174 Sum_probs=198.6
Q ss_pred CCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcc
Q 036985 154 SLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMR 233 (424)
Q Consensus 154 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 233 (424)
.+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+. ++|+.|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG---PSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC---TTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC---CCcCEEECc
Confidence 45699999999999998888999999999999999999997666 89999999999999998864432 899999999
Q ss_pred cCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCC
Q 036985 234 NNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNE 313 (424)
Q Consensus 234 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 313 (424)
+|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.++++....+. ..+++|++|+|++|.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----ASSDTLEHLNLQYNF 180 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG----GGTTTCCEEECTTSC
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh----hhCCcccEEecCCCc
Confidence 9999976553 468899999999999988888899999999999999999985443332 367899999999999
Q ss_pred CCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCC
Q 036985 314 LQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADN 393 (424)
Q Consensus 314 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N 393 (424)
+++..+ ...+++|+.|+|++|.+++..| .+..+.. |+.|++++|.+++ +|..+..+ ++|+.|++++|
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~--------L~~L~Ls~N~l~~-lp~~l~~l-~~L~~L~l~~N 247 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAG--------VTWISLRNNKLVL-IEKALRFS-QNLEHFDLRGN 247 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTT--------CSEEECTTSCCCE-ECTTCCCC-TTCCEEECTTC
T ss_pred cccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCC--------ccEEEecCCcCcc-cchhhccC-CCCCEEEcCCC
Confidence 996632 4468999999999999997544 4777777 9999999999985 78888888 59999999999
Q ss_pred CCC--CCCCccccccCCCcccccc
Q 036985 394 CLY--RCPFSFFFCQGARQKSLVE 415 (424)
Q Consensus 394 ~l~--~ip~~~~~~~~~l~~l~l~ 415 (424)
++. .+|..+..+.. ++.+++.
T Consensus 248 ~l~c~~~~~~~~~l~~-L~~l~~~ 270 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQR-VQTVAKQ 270 (487)
T ss_dssp CBCHHHHHHHHTTCHH-HHHHHHH
T ss_pred CCcCcchHHHHHhCCC-CcEEecc
Confidence 998 66655555444 5555553
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.7e-25 Score=204.12 Aligned_cols=225 Identities=25% Similarity=0.237 Sum_probs=169.7
Q ss_pred EEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcC
Q 036985 89 LNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNL 168 (424)
Q Consensus 89 L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l 168 (424)
++..+..+. .+|..+. +.|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344444444 3444332 5789999999999866666888999999999999999877777888899999999999998
Q ss_pred CCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcC
Q 036985 169 EGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKL 247 (424)
Q Consensus 169 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 247 (424)
.+..+..|.++++|++|++++|.+.+..+. +..+++|++|++++|.+++. .+|..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~l~~~~~~ 147 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF---------------------KLPEYFSN 147 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC---------------------CCCGGGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee---------------------cCchhhcc
Confidence 877777888888899988888888866554 77777777777777666531 24567777
Q ss_pred CCCCcEEEeeCCcCCCCcCccccCCCCCC----EEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhc
Q 036985 248 LSYLQVVDLSHNKLSGSVPSFVFSHPSLQ----QLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMA 323 (424)
Q Consensus 248 l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~----~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 323 (424)
+++|++|++++|++++..+..+..+++|+ +|++++|.+++++...+ ...+|++|++++|++++..+..+.
T Consensus 148 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF------KEIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS------CSCCEEEEECCSSCCSCCCTTTTT
T ss_pred CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc------CCCcccEEECCCCceeecCHhHhc
Confidence 88888888888888866666666555555 78888888887544332 234788888888888877666778
Q ss_pred CCCCCCEEeccCCcCcccCc
Q 036985 324 LMPKLSALSLENNKFTGMIP 343 (424)
Q Consensus 324 ~l~~L~~L~L~~N~l~~~~~ 343 (424)
.+++|+.|++++|++.+..+
T Consensus 222 ~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TCCSCCEEECCSSCBCCCTT
T ss_pred ccccccEEEccCCcccccCC
Confidence 88888888888888886654
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.3e-24 Score=199.71 Aligned_cols=209 Identities=25% Similarity=0.250 Sum_probs=158.8
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
+++++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46999999999999887778999999999999999999777778999999999999999999888889999999999999
Q ss_pred ccCcCCCCchhhcCCCCCCcEEEeeccccccc-CCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCC
Q 036985 164 DYNNLEGTIPASFNGLSSLKRLEIQSNKLTGE-FPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTV 241 (424)
Q Consensus 164 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 241 (424)
++|.+.+..+..+.++++|++|++++|.+++. .+. +..+++|++|++++|.+++..+..+.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------------- 170 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR----------------- 170 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-----------------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh-----------------
Confidence 99999987777899999999999999999874 244 88888999999888887754333222
Q ss_pred hhhhcCCCCCc-EEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCC
Q 036985 242 PESLKLLSYLQ-VVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGM 317 (424)
Q Consensus 242 ~~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 317 (424)
.+..++.+. +|++++|.+++..+. .....+|++|++++|++++++...+ ..+++|++|++++|.+.+.
T Consensus 171 --~l~~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 171 --VLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIF-----DRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp --HHHTCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTT-----TTCCSCCEEECCSSCBCCC
T ss_pred --hhhhccccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHh-----cccccccEEEccCCccccc
Confidence 112222222 566666666643333 3333466667777766666433221 3456677777777766643
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.3e-25 Score=204.13 Aligned_cols=226 Identities=19% Similarity=0.196 Sum_probs=151.5
Q ss_pred CCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEee
Q 036985 109 YLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQ 188 (424)
Q Consensus 109 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 188 (424)
.+..+++..+.+.+. .....+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 344455555555432 234456677777777776662 2 2466677777777777776642 356666666667666
Q ss_pred cccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCc
Q 036985 189 SNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPS 267 (424)
Q Consensus 189 ~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 267 (424)
+|.+++..+. +..+++|++|++++|.++ +..+..+..+++|++|++++|.+++..+.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQ----------------------SLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCC----------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCC----------------------ccCHHHhccCCCCCEEECCCCccCccCHH
Confidence 6666655544 555666666666555544 34445566777788888888877766666
Q ss_pred cccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHH
Q 036985 268 FVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYA 347 (424)
Q Consensus 268 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 347 (424)
.+..+++|++|++++|++++++... + ..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus 152 ~~~~l~~L~~L~l~~n~l~~~~~~~-~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~---- 222 (272)
T 3rfs_A 152 VFDKLTNLTELDLSYNQLQSLPEGV-F----DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP---- 222 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT-T----TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT----
T ss_pred HhccCccCCEEECCCCCcCccCHHH-h----cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc----
Confidence 6677788888888888877654322 2 456788888888888887777777888888888888888775433
Q ss_pred hhcCCCCCCCCCccEEEccCCcCccccChhhhhhc
Q 036985 348 IRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQ 382 (424)
Q Consensus 348 ~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~ 382 (424)
.|+.++++.|.++|.+|.+++.+.
T Consensus 223 -----------~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 223 -----------GIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp -----------TTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred -----------HHHHHHHHHHhCCCcccCcccccC
Confidence 277788888888888888777664
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.1e-25 Score=204.41 Aligned_cols=226 Identities=21% Similarity=0.236 Sum_probs=151.0
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
.++..+++..+.+.+.. ....+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++. ..+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 34555566666655432 25567888888888888873 33 577888888889888888853 46888888999999
Q ss_pred ccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCCh
Q 036985 164 DYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVP 242 (424)
Q Consensus 164 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~ 242 (424)
++|.+++..+..+.++++|++|++++|.+++..+. +..+++|++|++++|.+++..+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------- 150 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK---------------------- 150 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------------
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH----------------------
Confidence 98888877777788888999999999888877666 7778888888888777664333
Q ss_pred hhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhh
Q 036985 243 ESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFM 322 (424)
Q Consensus 243 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l 322 (424)
..+..+++|++|++++|++++..+..+..+++|++|++++|++++++.. .+ ..+++|++|++++|.+.+.
T Consensus 151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~----~~l~~L~~L~l~~N~~~~~----- 220 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG-VF----DRLTSLQYIWLHDNPWDCT----- 220 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TT----TTCTTCCEEECCSSCBCCC-----
T ss_pred HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH-HH----hCCcCCCEEEccCCCcccc-----
Confidence 3344555555666666655544444455556666666666666553322 11 3455666666666655532
Q ss_pred cCCCCCCEEeccCCcCcccCchhHHhh
Q 036985 323 ALMPKLSALSLENNKFTGMIPTEYAIR 349 (424)
Q Consensus 323 ~~l~~L~~L~L~~N~l~~~~~~~~~~~ 349 (424)
+++|+.|+++.|.++|.+|..++.+
T Consensus 221 --~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 221 --CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp --TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred --CcHHHHHHHHHHhCCCcccCccccc
Confidence 3456666666666666666665543
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=7.6e-24 Score=193.85 Aligned_cols=200 Identities=21% Similarity=0.175 Sum_probs=158.4
Q ss_pred CCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeC
Q 036985 181 SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSH 258 (424)
Q Consensus 181 ~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 258 (424)
+.+.++++++.++..+..+. ++++.|++++|.+++..+..+. ++|++|++++|.++...+..|..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 56788888888886544343 5788899999988877666665 8889999998888876666778888899999999
Q ss_pred CcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcC
Q 036985 259 NKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKF 338 (424)
Q Consensus 259 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l 338 (424)
|++++..+..+..+++|++|++++|++++++...+ ..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF-----DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh-----CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 98887666677888889999999988888654332 5678889999999988877777788888999999999988
Q ss_pred cccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCC
Q 036985 339 TGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLY 396 (424)
Q Consensus 339 ~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~ 396 (424)
++..+..+..+.+ |++|++++|++++..+..+..+ ++|++|++++|++.
T Consensus 170 ~~~~~~~~~~l~~--------L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 170 KRVPEGAFDKLTE--------LKTLKLDNNQLKRVPEGAFDSL-EKLKMLQLQENPWD 218 (270)
T ss_dssp SCCCTTTTTTCTT--------CCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSSCBC
T ss_pred cEeChhHhccCCC--------cCEEECCCCcCCcCCHHHhccc-cCCCEEEecCCCee
Confidence 8766666666655 8899999998886555567777 58889999998875
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=4.2e-24 Score=197.49 Aligned_cols=200 Identities=29% Similarity=0.305 Sum_probs=98.8
Q ss_pred cCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCChhhhcCCCCCcE
Q 036985 176 FNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTVPESLKLLSYLQV 253 (424)
Q Consensus 176 l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 253 (424)
+.+++++++++++++.++..++.+. ++++.|++++|.+++..+..+. ++|++|++++|.+++..+ ...+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 3455566666666666554433332 4555555555555544433333 455555555555543221 144555555
Q ss_pred EEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEec
Q 036985 254 VDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSL 333 (424)
Q Consensus 254 L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 333 (424)
|++++|+++ .+|..+..+++|++|++++|++++++...+ ..+++|++|++++|++++..+..|..+++|+.|+|
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL-----RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT-----TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH-----cCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 555555554 344444555555555555555554332221 34455555555555555444444455555555555
Q ss_pred cCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCC
Q 036985 334 ENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCL 395 (424)
Q Consensus 334 ~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l 395 (424)
++|++++..+..+..+.+ |++|+|++|+++ .+|..+... ++|+++++++|++
T Consensus 156 ~~N~l~~l~~~~~~~l~~--------L~~L~L~~N~l~-~ip~~~~~~-~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLEN--------LDTLLLQENSLY-TIPKGFFGS-HLLPFAFLHGNPW 207 (290)
T ss_dssp TTSCCSCCCTTTTTTCTT--------CCEEECCSSCCC-CCCTTTTTT-CCCSEEECCSCCB
T ss_pred CCCcCCccCHHHhcCcCC--------CCEEECCCCcCC-ccChhhccc-ccCCeEEeCCCCc
Confidence 555555333333333333 555555555554 345444444 2555555555554
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=7e-26 Score=216.37 Aligned_cols=269 Identities=16% Similarity=0.133 Sum_probs=142.5
Q ss_pred EEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcc----hhcCCCc-CCceEEcccCcccccCCccccCC-----Cc
Q 036985 88 ELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIP----ESLSNLT-RLIRLGLSRNSFSGEIPASIGSL-----SS 157 (424)
Q Consensus 88 ~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~p~~~~~l-----~~ 157 (424)
..+++.+.+++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777777777666666667788887777775555 5666777 77777777777776656555554 77
Q ss_pred CceEecccCcCCCCchhhc----CCC-CCCcEEEeecccccccCCC-----CCC-CCCcCEEEccCCcCCCCCCCccccC
Q 036985 158 LEELYLDYNNLEGTIPASF----NGL-SSLKRLEIQSNKLTGEFPE-----LGS-LKNLYFLDASDNAISGKLPAILPTS 226 (424)
Q Consensus 158 L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~-----l~~-l~~L~~L~l~~n~l~~~~~~~~~~~ 226 (424)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+. +.. .++|++|++++|.+++.....+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--- 158 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL--- 158 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH---
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH---
Confidence 7777777777776555533 333 6777777777777654432 223 2466666666666554332221
Q ss_pred CcEEEcccCcCCCCChhhhcCCC-CCcEEEeeCCcCCCCcCcc----ccCC-CCCCEEeccCCcCCCCCCCCCCCCCccc
Q 036985 227 LVQISMRNNNLQGTVPESLKLLS-YLQVVDLSHNKLSGSVPSF----VFSH-PSLQQLTLSFNQFTSIQQPAPTNDNNIF 300 (424)
Q Consensus 227 L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~----l~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 300 (424)
+..+...+ +|++|++++|++++..+.. +... ++|++|++++|.+++.............
T Consensus 159 ---------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 159 ---------------IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223 (362)
T ss_dssp ---------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred ---------------HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence 12223333 5555555555554333322 2222 3555555555555441110000000001
Q ss_pred CCCCcEEEccCCCCCCCCh----hhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccC
Q 036985 301 SSQLIAVDISNNELQGMLP----LFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIP 375 (424)
Q Consensus 301 ~~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p 375 (424)
.++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+..+.. ....+++|++||+++|++.+..+
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~-~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA-AFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT-TSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH-HhccCCceEEEecCCCcCCCcch
Confidence 2355555555555554433 22344556666666666644333332322211 00133446666666666655433
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=7.8e-24 Score=197.76 Aligned_cols=223 Identities=22% Similarity=0.243 Sum_probs=148.8
Q ss_pred CCCCcEEEccCCCCCCCcch---hcCCCcCCceEEcccCcccccCCccc--cCCCcCceEecccCcCCCCch----hhcC
Q 036985 107 LPYLETLDLSNNFFSGSIPE---SLSNLTRLIRLGLSRNSFSGEIPASI--GSLSSLEELYLDYNNLEGTIP----ASFN 177 (424)
Q Consensus 107 l~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~L~L~~n~i~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~ 177 (424)
...++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34577888888877532111 12234679999999999988888887 889999999999999886544 4456
Q ss_pred CCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCC---CCCcc-c--cCCcEEEcccCcCCCCChh----hhc
Q 036985 178 GLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGK---LPAIL-P--TSLVQISMRNNNLQGTVPE----SLK 246 (424)
Q Consensus 178 ~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~---~~~~~-~--~~L~~L~l~~n~l~~~~~~----~l~ 246 (424)
.+++|++|++++|.+.+..+. +..+++|++|++++|++.+. ....+ . ++|++|++++|.++. ++. .++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 788999999999999877765 88888999999998887542 11111 1 567777777777652 222 245
Q ss_pred CCCCCcEEEeeCCcCCCCcCccccCC---CCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhc
Q 036985 247 LLSYLQVVDLSHNKLSGSVPSFVFSH---PSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMA 323 (424)
Q Consensus 247 ~l~~L~~L~Ls~n~l~~~~~~~l~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 323 (424)
.+++|++|++++|++++..|..+..+ ++|++|++++|+++.++. . ..++|++|++++|++++. |. +.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~------~~~~L~~L~Ls~N~l~~~-~~-~~ 291 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK--G------LPAKLRVLDLSSNRLNRA-PQ-PD 291 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS--C------CCSCCSCEECCSCCCCSC-CC-TT
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh--h------hcCCCCEEECCCCcCCCC-ch-hh
Confidence 66777777777777776556555554 467777777777665422 1 125666666666666643 22 45
Q ss_pred CCCCCCEEeccCCcCcc
Q 036985 324 LMPKLSALSLENNKFTG 340 (424)
Q Consensus 324 ~l~~L~~L~L~~N~l~~ 340 (424)
.+++|+.|++++|++++
T Consensus 292 ~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 292 ELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCSCEECSSTTTSC
T ss_pred hCCCccEEECcCCCCCC
Confidence 56666666666666653
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=7.1e-26 Score=216.34 Aligned_cols=247 Identities=18% Similarity=0.184 Sum_probs=167.7
Q ss_pred CCceeEEEeCCCCCccccC----CCcCCCC-CCcEEEccCCCCCCCcchhcCCC-----cCCceEEcccCcccccCCccc
Q 036985 83 LSRVTELNLDQAGYSGSLS----TTSWNLP-YLETLDLSNNFFSGSIPESLSNL-----TRLIRLGLSRNSFSGEIPASI 152 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~p~~~ 152 (424)
.+++++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3569999999999987766 6778888 89999999999997777777665 999999999999997666644
Q ss_pred ----cCC-CcCceEecccCcCCCCchhhc----CC-CCCCcEEEeecccccccCCC-----CCCCC-CcCEEEccCCcCC
Q 036985 153 ----GSL-SSLEELYLDYNNLEGTIPASF----NG-LSSLKRLEIQSNKLTGEFPE-----LGSLK-NLYFLDASDNAIS 216 (424)
Q Consensus 153 ----~~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~~-----l~~l~-~L~~L~l~~n~l~ 216 (424)
..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.... +...+ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 444 899999999999987766554 34 36999999999999854332 33343 6777777766665
Q ss_pred CCCCCccccCCcEEEcccCcCCCCChhhhcCC-CCCcEEEeeCCcCCCC----cCccccC-CCCCCEEeccCCcCCCCCC
Q 036985 217 GKLPAILPTSLVQISMRNNNLQGTVPESLKLL-SYLQVVDLSHNKLSGS----VPSFVFS-HPSLQQLTLSFNQFTSIQQ 290 (424)
Q Consensus 217 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~----~~~~l~~-~~~L~~L~L~~n~l~~~~~ 290 (424)
+..+..+ ...+..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++.+.
T Consensus 181 ~~~~~~l------------------~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 181 SKNCAEL------------------AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp GSCHHHH------------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hhhHHHH------------------HHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4332211 1223334 3666666666666642 2333333 3467777777776665322
Q ss_pred CCCCCCCcccCCCCcEEEccCCCCCCCCh-------hhhcCCCCCCEEeccCCcCcccCchhHHh
Q 036985 291 PAPTNDNNIFSSQLIAVDISNNELQGMLP-------LFMALMPKLSALSLENNKFTGMIPTEYAI 348 (424)
Q Consensus 291 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-------~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 348 (424)
.. +......+++|++|++++|.+.+..+ ..+..+++|+.|++++|++.+..+..+..
T Consensus 243 ~~-l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~ 306 (362)
T 3goz_A 243 EN-LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306 (362)
T ss_dssp HH-HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHH
T ss_pred HH-HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHH
Confidence 00 00001345667777777777544332 24566778888889988888776655554
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=1.2e-26 Score=236.03 Aligned_cols=322 Identities=13% Similarity=0.124 Sum_probs=166.3
Q ss_pred ceeEEEeCCCC-Ccc-ccCCCcCCCCCCcEEEccCCCCCCC----cchhcCCCcCCceEEcccCcccc----cCCccccC
Q 036985 85 RVTELNLDQAG-YSG-SLSTTSWNLPYLETLDLSNNFFSGS----IPESLSNLTRLIRLGLSRNSFSG----EIPASIGS 154 (424)
Q Consensus 85 ~l~~L~L~~~~-l~~-~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~----~~p~~~~~ 154 (424)
+|++|++++|. ++. .++.....+++|++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 38888888775 221 1222234678888888888877544 34445567788888888887762 33444556
Q ss_pred CCcCceEecccCcCCCCchhhcCCCCCCcEEEeeccccc----ccCCCCCCCCCcCEEEccCCcCCCCCCCccc--cCCc
Q 036985 155 LSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLT----GEFPELGSLKNLYFLDASDNAISGKLPAILP--TSLV 228 (424)
Q Consensus 155 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~ 228 (424)
+++|++|++++|.+.+ ++..+..+++|++|+++..... .....+..+++|+.|+++++... ..+..+. ++|+
T Consensus 219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIR 296 (592)
T ss_dssp CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCC
T ss_pred CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCc
Confidence 7888888888877764 5667777777777777643221 11112455556666666553221 2222222 5566
Q ss_pred EEEcccCcCCCCCh-hhhcCCCCCcEEEeeCCcCCC-CcCccccCCCCCCEEecc-------------------------
Q 036985 229 QISMRNNNLQGTVP-ESLKLLSYLQVVDLSHNKLSG-SVPSFVFSHPSLQQLTLS------------------------- 281 (424)
Q Consensus 229 ~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~~~~L~~L~L~------------------------- 281 (424)
+|++++|.+++... ..+..+++|++|++++ .+.+ .++.....+++|++|+++
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 66666665443222 2234455555555552 2221 112222334444444444
Q ss_pred -----------CCcCCCCCCCCCCCCCcccCCCCcEEEcc----CCCCCCC-----ChhhhcCCCCCCEEeccCCc--Cc
Q 036985 282 -----------FNQFTSIQQPAPTNDNNIFSSQLIAVDIS----NNELQGM-----LPLFMALMPKLSALSLENNK--FT 339 (424)
Q Consensus 282 -----------~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls----~n~l~~~-----~~~~l~~l~~L~~L~L~~N~--l~ 339 (424)
.|.+++....... ..+++|++|+++ .|.+++. ++..+..+++|+.|++++|. ++
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~----~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIG----TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHH----HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred hCccCeEEEeecCCccHHHHHHHH----hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence 3333221000000 113444444443 3334432 22223344455555554322 33
Q ss_pred ccCchhHHhhcCCCCCCCCCccEEEccCCcCccc-cChhhhhhccCCcEEEccCCCCCC--CCCccccccCCCccccccc
Q 036985 340 GMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGA-IPRSLLELQPGSANVRLADNCLYR--CPFSFFFCQGARQKSLVEC 416 (424)
Q Consensus 340 ~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~-~p~~~~~l~~~L~~L~l~~N~l~~--ip~~~~~~~~~l~~l~l~~ 416 (424)
+..+..+.. .+++|++|++++|++++. ++..+..+ ++|++|++++|.|+. ++..+..+.. |+.+++++
T Consensus 452 ~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~ls~ 522 (592)
T 3ogk_B 452 DLGLSYIGQ-------YSPNVRWMLLGYVGESDEGLMEFSRGC-PNLQKLEMRGCCFSERAIAAAVTKLPS-LRYLWVQG 522 (592)
T ss_dssp HHHHHHHHH-------SCTTCCEEEECSCCSSHHHHHHHHTCC-TTCCEEEEESCCCBHHHHHHHHHHCSS-CCEEEEES
T ss_pred HHHHHHHHH-------hCccceEeeccCCCCCHHHHHHHHhcC-cccCeeeccCCCCcHHHHHHHHHhcCc-cCeeECcC
Confidence 333333222 234477777777777653 33334455 477777777777652 3333333433 77777777
Q ss_pred CccCCC
Q 036985 417 NRFTPV 422 (424)
Q Consensus 417 n~l~~~ 422 (424)
|+++..
T Consensus 523 n~it~~ 528 (592)
T 3ogk_B 523 YRASMT 528 (592)
T ss_dssp CBCCTT
T ss_pred CcCCHH
Confidence 776643
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.3e-23 Score=191.48 Aligned_cols=197 Identities=27% Similarity=0.278 Sum_probs=131.6
Q ss_pred CCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 82 ALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
.+++++++++++++++. +|..+. +.++.|++++|.+++..+..|.++++|++|++++|.+++. +. .+.+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEE
T ss_pred ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEE
Confidence 46788888998888874 444442 6788899999988877777888888999999998888854 33 2778888888
Q ss_pred ecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCC
Q 036985 162 YLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQ 238 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~ 238 (424)
++++|.+. .+|..+..+++|++|++++|++++..+. +..+++|++|++++|++++..+..+. ++|+.|++++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 88888887 6677778888888888888888876655 77778888888777777654443332 44444555444444
Q ss_pred CCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcC
Q 036985 239 GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285 (424)
Q Consensus 239 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l 285 (424)
...+..+..+++|+.|++++|+++ .+|..+...++|+.|++++|.+
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 333333444444444444444444 3343344444444444444443
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=200.91 Aligned_cols=223 Identities=18% Similarity=0.171 Sum_probs=182.8
Q ss_pred CceeEEEeCCCCCccccCC---CcCCCCCCcEEEccCCCCCCCcchhc--CCCcCCceEEcccCcccccCC----ccccC
Q 036985 84 SRVTELNLDQAGYSGSLST---TSWNLPYLETLDLSNNFFSGSIPESL--SNLTRLIRLGLSRNSFSGEIP----ASIGS 154 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~i~~~~p----~~~~~ 154 (424)
.+++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3478888888877542111 12245779999999999998888888 899999999999999997655 34567
Q ss_pred CCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccc---cCCC--CCCCCCcCEEEccCCcCCCCCCC---ccc--
Q 036985 155 LSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTG---EFPE--LGSLKNLYFLDASDNAISGKLPA---ILP-- 224 (424)
Q Consensus 155 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~---~~~~--l~~l~~L~~L~l~~n~l~~~~~~---~~~-- 224 (424)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+ .... +..+++|++|++++|.++..... .+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 9999999999999998888999999999999999999865 2222 57899999999999999743221 112
Q ss_pred cCCcEEEcccCcCCCCChhhhcCC---CCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccC
Q 036985 225 TSLVQISMRNNNLQGTVPESLKLL---SYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFS 301 (424)
Q Consensus 225 ~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 301 (424)
++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++++.+ ..+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~-------~~l 293 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQP-------DEL 293 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCT-------TSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchh-------hhC
Confidence 899999999999998878777776 69999999999999 6677664 8999999999999987442 567
Q ss_pred CCCcEEEccCCCCCC
Q 036985 302 SQLIAVDISNNELQG 316 (424)
Q Consensus 302 ~~L~~L~Ls~n~l~~ 316 (424)
++|++|++++|.+++
T Consensus 294 ~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 294 PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCEECSSTTTSC
T ss_pred CCccEEECcCCCCCC
Confidence 999999999999974
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=4e-25 Score=208.84 Aligned_cols=247 Identities=15% Similarity=0.133 Sum_probs=152.6
Q ss_pred CCceEEcccCcccccCCccccCC--CcCceEecccCcCCCCchhhcCCCCCCcEEEeeccccccc-CCC-CCCCCCcCEE
Q 036985 133 RLIRLGLSRNSFSGEIPASIGSL--SSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGE-FPE-LGSLKNLYFL 208 (424)
Q Consensus 133 ~L~~L~L~~n~i~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~-l~~l~~L~~L 208 (424)
.++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++. .+. +..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4778888887766 3455555 7888888888888765554 55678888888888887653 333 6777888888
Q ss_pred EccCCcCCCCCCCccc--cCCcEEEcccC-cCCCC-ChhhhcCCCCCcEEEeeCC-cCCCC-cCccccCCC-CCCEEecc
Q 036985 209 DASDNAISGKLPAILP--TSLVQISMRNN-NLQGT-VPESLKLLSYLQVVDLSHN-KLSGS-VPSFVFSHP-SLQQLTLS 281 (424)
Q Consensus 209 ~l~~n~l~~~~~~~~~--~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~~~-~L~~L~L~ 281 (424)
++++|.+++..+..+. ++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 8888776654444333 67777777777 45542 4455666777777777777 66643 455566666 77777777
Q ss_pred CC--cCCCCCCCCCCCCCcccCCCCcEEEccCCC-CCCCChhhhcCCCCCCEEeccCCc-CcccCchhHHhhcCCCCCCC
Q 036985 282 FN--QFTSIQQPAPTNDNNIFSSQLIAVDISNNE-LQGMLPLFMALMPKLSALSLENNK-FTGMIPTEYAIRVAVPGPGI 357 (424)
Q Consensus 282 ~n--~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~~~~ 357 (424)
+| .+++...+... ..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++
T Consensus 204 ~~~~~~~~~~l~~~~----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~------ 273 (336)
T 2ast_B 204 GYRKNLQKSDLSTLV----RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT------ 273 (336)
T ss_dssp SCGGGSCHHHHHHHH----HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT------
T ss_pred CCcccCCHHHHHHHH----hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC------
Confidence 77 34321112111 346677777777776 555555666677777777777774 22211123443333
Q ss_pred CCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCC
Q 036985 358 APFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCP 399 (424)
Q Consensus 358 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip 399 (424)
|++|++++| ++.. .+..+...+..|++++|.++++.
T Consensus 274 --L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 274 --LKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp --CCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTT
T ss_pred --CCEEeccCc-cCHH---HHHHHHhhCcceEEecccCcccc
Confidence 777777776 3322 23333223555666777776443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2.3e-23 Score=187.03 Aligned_cols=196 Identities=22% Similarity=0.245 Sum_probs=123.7
Q ss_pred CCcEEEccCCCCCCCcchhcCCCcCCceEEcccCc-ccccCCccccCCCcCceEeccc-CcCCCCchhhcCCCCCCcEEE
Q 036985 109 YLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNS-FSGEIPASIGSLSSLEELYLDY-NNLEGTIPASFNGLSSLKRLE 186 (424)
Q Consensus 109 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~ 186 (424)
.|++|++++|++++..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67888888888876555677788888888888886 7755556777888888888887 777766566777788888888
Q ss_pred eecccccccCCCCCCCCCcC---EEEccCC-cCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCc-EEEeeCCcC
Q 036985 187 IQSNKLTGEFPELGSLKNLY---FLDASDN-AISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQ-VVDLSHNKL 261 (424)
Q Consensus 187 l~~n~l~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l 261 (424)
+++|.+++ .+.+..+++|+ +|++++| .+++ ..+..|..+++|+ +|++++|++
T Consensus 112 l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~----------------------i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 112 IFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTS----------------------IPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCE----------------------ECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCCCCCcc-ccccccccccccccEEECCCCcchhh----------------------cCcccccchhcceeEEEcCCCCC
Confidence 88887775 33355665555 5555555 4432 3333455556666 666666666
Q ss_pred CCCcCccccCCCCCCEEeccCCc-CCCCCCCCCCCCCcccC-CCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCC
Q 036985 262 SGSVPSFVFSHPSLQQLTLSFNQ-FTSIQQPAPTNDNNIFS-SQLIAVDISNNELQGMLPLFMALMPKLSALSLENN 336 (424)
Q Consensus 262 ~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N 336 (424)
+ .+|......++|++|++++|+ +++++...+ ..+ ++|++|++++|++++..+. .+++|+.|+++++
T Consensus 169 ~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~-----~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 169 T-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF-----GGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp C-EECTTTTTTCEEEEEECTTCTTCCEECTTTT-----TTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred c-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHh-----hccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 5 333332223566666666663 655433222 334 5666666666666643222 4556666666654
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.3e-25 Score=210.45 Aligned_cols=264 Identities=17% Similarity=0.126 Sum_probs=178.6
Q ss_pred ccceeecCCCCCCCceeEEEeCCCCCccccCCCcCCC--CCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCccccc-
Q 036985 71 TCGFRCDVSVSALSRVTELNLDQAGYSGSLSTTSWNL--PYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGE- 147 (424)
Q Consensus 71 ~~~~~c~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~- 147 (424)
|.++.|+. ..++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++.
T Consensus 39 W~~~~~~~-----~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 39 WYRLASDE-----SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp HHHHHTCS-----TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred HHHHhcCc-----hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence 45666553 45788999888776 3445555 7899999999988866554 66789999999999988755
Q ss_pred CCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecc-ccccc-CCC-CCCCCCcCEEEccCC-cCCCCCCCcc
Q 036985 148 IPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSN-KLTGE-FPE-LGSLKNLYFLDASDN-AISGKLPAIL 223 (424)
Q Consensus 148 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~-l~~l~~L~~L~l~~n-~l~~~~~~~~ 223 (424)
++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++. .+. +..+++|++|++++| .+++.
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~----- 184 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK----- 184 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----
Confidence 7777888899999999999888778888888888999998888 56642 233 566677777777766 55421
Q ss_pred ccCCcEEEcccCcCCCCChhhhcCCC-CCcEEEeeCC--cCC-CCcCccccCCCCCCEEeccCCc-CCCCCCCCCCCCCc
Q 036985 224 PTSLVQISMRNNNLQGTVPESLKLLS-YLQVVDLSHN--KLS-GSVPSFVFSHPSLQQLTLSFNQ-FTSIQQPAPTNDNN 298 (424)
Q Consensus 224 ~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~ 298 (424)
.++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++.... .+
T Consensus 185 ----------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l---- 243 (336)
T 2ast_B 185 ----------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EF---- 243 (336)
T ss_dssp ----------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GG----
T ss_pred ----------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HH----
Confidence 1344556666 7777777777 343 2345555666777777777776 4432222 22
Q ss_pred ccCCCCcEEEccCCC-CCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChh
Q 036985 299 IFSSQLIAVDISNNE-LQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRS 377 (424)
Q Consensus 299 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~ 377 (424)
..+++|++|++++|. +.......+..+++|+.|++++| ++...-..+.. . ++.|++++|++++..|..
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~--~--------l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--A--------LPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH--H--------STTSEESCCCSCCTTCSS
T ss_pred hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHh--h--------CcceEEecccCccccCCc
Confidence 455777777777774 33222235677888888888888 54433333321 2 566778888888877766
Q ss_pred hhh
Q 036985 378 LLE 380 (424)
Q Consensus 378 ~~~ 380 (424)
+..
T Consensus 313 ~~~ 315 (336)
T 2ast_B 313 IGN 315 (336)
T ss_dssp CSS
T ss_pred ccc
Confidence 543
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.5e-25 Score=214.48 Aligned_cols=247 Identities=18% Similarity=0.180 Sum_probs=140.5
Q ss_pred cchhcCCCcCCceEEcccCcccccCC----ccccCCCcCceEecccCcC---CCCchhhc-------CCCCCCcEEEeec
Q 036985 124 IPESLSNLTRLIRLGLSRNSFSGEIP----ASIGSLSSLEELYLDYNNL---EGTIPASF-------NGLSSLKRLEIQS 189 (424)
Q Consensus 124 ~~~~~~~l~~L~~L~L~~n~i~~~~p----~~~~~l~~L~~L~L~~n~l---~~~~~~~l-------~~l~~L~~L~l~~ 189 (424)
++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45566777888888888888875533 3466788888888887543 33445444 5667777777777
Q ss_pred cccccc----CCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCC---------CCCcEEE
Q 036985 190 NKLTGE----FPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLL---------SYLQVVD 255 (424)
Q Consensus 190 n~l~~~----~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l---------~~L~~L~ 255 (424)
|.+++. ++. +..+++|++|++++|.+++..+..+. ..+..+ ++|++|+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~------------------~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA------------------RALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH------------------HHHHHHHHHHHHHTCCCCCEEE
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH------------------HHHHHHhhhhhcccCCCCcEEE
Confidence 777651 222 55566666666666665432221111 112222 5666666
Q ss_pred eeCCcCC-CCcC---ccccCCCCCCEEeccCCcCCCCC----CCCCCCCCcccCCCCcEEEccCCCCC----CCChhhhc
Q 036985 256 LSHNKLS-GSVP---SFVFSHPSLQQLTLSFNQFTSIQ----QPAPTNDNNIFSSQLIAVDISNNELQ----GMLPLFMA 323 (424)
Q Consensus 256 Ls~n~l~-~~~~---~~l~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~----~~~~~~l~ 323 (424)
+++|+++ +.++ ..+..+++|++|++++|+++... .+..+ ..+++|++|+|++|.++ ..+|..+.
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l----~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL----AYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG----GGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh----hcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 6666665 2222 23445566666666666665211 01011 34566666666666664 34555666
Q ss_pred CCCCCCEEeccCCcCcccC----chhHHhhcCCCCCCCCCccEEEccCCcCcc----ccChhh-hhhccCCcEEEccCCC
Q 036985 324 LMPKLSALSLENNKFTGMI----PTEYAIRVAVPGPGIAPFQRLLLGGNYLFG----AIPRSL-LELQPGSANVRLADNC 394 (424)
Q Consensus 324 ~l~~L~~L~L~~N~l~~~~----~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~----~~p~~~-~~l~~~L~~L~l~~N~ 394 (424)
.+++|+.|+|++|.+++.. +..+.. ..+++|++|+|++|.+++ .+|..+ .++ |+|++|++++|+
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~------~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l-~~L~~L~l~~N~ 314 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSK------LENIGLQTLRLQYNEIELDAVRTLKTVIDEKM-PDLLFLELNGNR 314 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHT------CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC-TTCCEEECTTSB
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhh------ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC-CCceEEEccCCc
Confidence 6666777777777666542 222221 012336677777776665 356555 334 467777777776
Q ss_pred CCCCC
Q 036985 395 LYRCP 399 (424)
Q Consensus 395 l~~ip 399 (424)
++...
T Consensus 315 l~~~~ 319 (386)
T 2ca6_A 315 FSEED 319 (386)
T ss_dssp SCTTS
T ss_pred CCcch
Confidence 66444
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=5.5e-26 Score=219.08 Aligned_cols=264 Identities=16% Similarity=0.100 Sum_probs=173.9
Q ss_pred cCCCcCCCCCCcEEEccCCCCCCCcc----hhcCCCcCCceEEcccCc---ccccCCccc-------cCCCcCceEeccc
Q 036985 100 LSTTSWNLPYLETLDLSNNFFSGSIP----ESLSNLTRLIRLGLSRNS---FSGEIPASI-------GSLSSLEELYLDY 165 (424)
Q Consensus 100 ~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~---i~~~~p~~~-------~~l~~L~~L~L~~ 165 (424)
++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +.+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45567788999999999999986533 457899999999999964 445556555 7899999999999
Q ss_pred CcCCC----CchhhcCCCCCCcEEEeecccccccCCC-----CCCC---------CCcCEEEccCCcCCCCCCCccccCC
Q 036985 166 NNLEG----TIPASFNGLSSLKRLEIQSNKLTGEFPE-----LGSL---------KNLYFLDASDNAISGKLPAILPTSL 227 (424)
Q Consensus 166 n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~-----l~~l---------~~L~~L~l~~n~l~~~~~~~~~~~L 227 (424)
|.+.+ .++..+..+++|++|++++|.+++..+. +..+ ++|++|++++|.++.....
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~------ 177 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK------ 177 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH------
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH------
Confidence 99997 4777889999999999999998743332 2222 5666666666655421100
Q ss_pred cEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCC-----CcCccccCCCCCCEEeccCCcCCCC---CCCCCCCCCcc
Q 036985 228 VQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSG-----SVPSFVFSHPSLQQLTLSFNQFTSI---QQPAPTNDNNI 299 (424)
Q Consensus 228 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~~l~~~~~L~~L~L~~n~l~~~---~~~~~~~~~~~ 299 (424)
.+...+..+++|++|++++|+++. ..+..+..+++|++|++++|.++.. ..+..+ .
T Consensus 178 ------------~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l----~ 241 (386)
T 2ca6_A 178 ------------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL----K 241 (386)
T ss_dssp ------------HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG----G
T ss_pred ------------HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH----c
Confidence 011345566677777777776652 1232556667777777777776421 111111 4
Q ss_pred cCCCCcEEEccCCCCCCC----Chhhhc--CCCCCCEEeccCCcCcc----cCchhH-HhhcCCCCCCCCCccEEEccCC
Q 036985 300 FSSQLIAVDISNNELQGM----LPLFMA--LMPKLSALSLENNKFTG----MIPTEY-AIRVAVPGPGIAPFQRLLLGGN 368 (424)
Q Consensus 300 ~~~~L~~L~Ls~n~l~~~----~~~~l~--~l~~L~~L~L~~N~l~~----~~~~~~-~~~~~l~~~~~~~L~~L~Ls~N 368 (424)
.+++|++|+|++|.+++. ++..+. .+++|+.|+|++|.+++ .+|..+ ..+++ |++|++++|
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~--------L~~L~l~~N 313 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD--------LLFLELNGN 313 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT--------CCEEECTTS
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC--------ceEEEccCC
Confidence 456777777777777654 344553 37788888888888876 366655 33455 888888888
Q ss_pred cCccccC--hhhhhhccCCcEEEccCC
Q 036985 369 YLFGAIP--RSLLELQPGSANVRLADN 393 (424)
Q Consensus 369 ~l~~~~p--~~~~~l~~~L~~L~l~~N 393 (424)
++++..+ ..+....|.++.+.+..+
T Consensus 314 ~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 314 RFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp BSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred cCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 8876553 444333345555555443
No 87
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=2.1e-26 Score=234.27 Aligned_cols=332 Identities=13% Similarity=0.038 Sum_probs=196.5
Q ss_pred CCceeEEEeCCCCCccccCCCcCC-CCC-CcEEEccCCC-CCC-CcchhcCCCcCCceEEcccCccccc----CCccccC
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWN-LPY-LETLDLSNNF-FSG-SIPESLSNLTRLIRLGLSRNSFSGE----IPASIGS 154 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~-l~~-L~~L~L~~n~-i~~-~~~~~~~~l~~L~~L~L~~n~i~~~----~p~~~~~ 154 (424)
++++++|+|+++.+++..+..+.. ++. |++|++++|. +.. .++....++++|++|++++|.+++. ++..+..
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 466777777777666554444444 333 7777777765 211 1222234677788888888776644 2233456
Q ss_pred CCcCceEecccCcCCC----CchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCC---CCCCCccc--c
Q 036985 155 LSSLEELYLDYNNLEG----TIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAIS---GKLPAILP--T 225 (424)
Q Consensus 155 l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~--~ 225 (424)
+++|++|++++|.+.+ .++..+.++++|++|++++|.+.+....+..+++|+.|+++..... +.....+. +
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 6778888888777762 3344456677888888888777764433667778888888753222 11111222 7
Q ss_pred CCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcC-ccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCC
Q 036985 226 SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVP-SFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQL 304 (424)
Q Consensus 226 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L 304 (424)
+|+.++++++.. ..++..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+...+... ..+++|
T Consensus 271 ~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~----~~~~~L 344 (592)
T 3ogk_B 271 KLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA----QYCKQL 344 (592)
T ss_dssp TCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHH----HHCTTC
T ss_pred cccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHH----HhCCCC
Confidence 888888887543 3567778889999999999999765433 346789999999998 433321111111 233445
Q ss_pred cEEEccC-----------CCCCCCC-hhhhcCCCCCCEEeccCCcCcccCchhHHh-hcCC--------------C----
Q 036985 305 IAVDISN-----------NELQGML-PLFMALMPKLSALSLENNKFTGMIPTEYAI-RVAV--------------P---- 353 (424)
Q Consensus 305 ~~L~Ls~-----------n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-~~~l--------------~---- 353 (424)
++|++++ +.+++.. +.....+++|++|+++.|.+++..+..++. ++++ .
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 5555552 2333211 111223444444444444444333333322 1110 0
Q ss_pred -------CCCCCCccEEEccCC--cCccccChhhhhhccCCcEEEccCCCCCC--CCCccccccCCCcccccccCccCC
Q 036985 354 -------GPGIAPFQRLLLGGN--YLFGAIPRSLLELQPGSANVRLADNCLYR--CPFSFFFCQGARQKSLVECNRFTP 421 (424)
Q Consensus 354 -------~~~~~~L~~L~Ls~N--~l~~~~p~~~~~l~~~L~~L~l~~N~l~~--ip~~~~~~~~~l~~l~l~~n~l~~ 421 (424)
..++++|++|++++| .+++..+..+....|+|++|++++|.++. ++..+..+.. |++|++++|+++.
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN-LQKLEMRGCCFSE 502 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT-CCEEEEESCCCBH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc-cCeeeccCCCCcH
Confidence 002344888888754 36666666665533689999999998873 4444445544 9999999998753
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=8.4e-23 Score=184.80 Aligned_cols=185 Identities=23% Similarity=0.247 Sum_probs=141.1
Q ss_pred cceeecCCCCCCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCcc
Q 036985 72 CGFRCDVSVSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPAS 151 (424)
Q Consensus 72 ~~~~c~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~ 151 (424)
+|..|.. ..++++++++.++. +|..+. +.++.|++++|.+.+..+..|.++++|++|++++|.+++..+..
T Consensus 8 ~gC~C~~------~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 8 TGCTCNE------GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp HSSEEEG------GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CceEcCC------CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 6777752 46789999999874 554443 68999999999999888888999999999999999999888888
Q ss_pred ccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEE
Q 036985 152 IGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQI 230 (424)
Q Consensus 152 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L 230 (424)
|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+. +..+++|++|++++|.+++..+
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------- 148 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA---------- 148 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH----------
Confidence 99999999999999999977777888899999999999998876666 6778888888887777764433
Q ss_pred EcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCC
Q 036985 231 SMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTS 287 (424)
Q Consensus 231 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 287 (424)
..+..+++|++|++++|++++..+..+..+++|++|++++|.+..
T Consensus 149 ------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 149 ------------GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ------------HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 344555555566666665554444455555566666666665544
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3.4e-23 Score=185.95 Aligned_cols=196 Identities=19% Similarity=0.130 Sum_probs=147.0
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCC-CCCCcchhcCCCcCCceEEccc-CcccccCCccccCCCcCceE
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNF-FSGSIPESLSNLTRLIRLGLSR-NSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L 161 (424)
+++++|++++|.+++..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999999998877789999999999999997 8866666899999999999998 99997777889999999999
Q ss_pred ecccCcCCCCchhhcCCCCCCc---EEEeecc-cccccCCC-CCCCCCcC-EEEccCCcCCCCCCCccccCCcEEEcccC
Q 036985 162 YLDYNNLEGTIPASFNGLSSLK---RLEIQSN-KLTGEFPE-LGSLKNLY-FLDASDNAISGKLPAILPTSLVQISMRNN 235 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~-l~~l~~L~-~L~l~~n~l~~~~~~~~~~~L~~L~l~~n 235 (424)
++++|.+++ +|. +..+++|+ +|++++| .+++..+. +..+++|+ +|++++|.++...+..+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~------------ 176 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF------------ 176 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc------------
Confidence 999999986 665 88888888 9999999 99877776 88899999 99998888763322222
Q ss_pred cCCCCChhhhcCCCCCcEEEeeCCc-CCCCcCccccCC-CCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCC
Q 036985 236 NLQGTVPESLKLLSYLQVVDLSHNK-LSGSVPSFVFSH-PSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNN 312 (424)
Q Consensus 236 ~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n 312 (424)
.. ++|++|++++|+ +++..+..+..+ ++|++|++++|++++++. ..+++|+.|+++++
T Consensus 177 ----------~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~--------~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 177 ----------NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS--------KGLEHLKELIARNT 236 (239)
T ss_dssp ----------TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC--------TTCTTCSEEECTTC
T ss_pred ----------CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh--------hHhccCceeeccCc
Confidence 22 445555555553 543333444455 555555555555554322 12345555555543
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.8e-22 Score=188.19 Aligned_cols=195 Identities=27% Similarity=0.353 Sum_probs=129.5
Q ss_pred cCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCc
Q 036985 104 SWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLK 183 (424)
Q Consensus 104 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 183 (424)
...+++|++|++++|.++. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3456777777777777763 34 467777777777777777743 33 77777777777777777643 2566677777
Q ss_pred EEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCC
Q 036985 184 RLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSG 263 (424)
Q Consensus 184 ~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 263 (424)
+|++++|.+++. +.+..+++|++|++++|.+++ ..+ +..+++|++|++++|.+++
T Consensus 111 ~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~----------------------~~~--l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 111 TLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITN----------------------ISP--LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp EEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCC----------------------CGG--GGGCTTCCEEECCSSCCCC
T ss_pred EEECCCCCCCCc-hhhcCCCCCCEEECCCCccCc----------------------Ccc--ccCCCCccEEEccCCcCCC
Confidence 777777776643 235566666666666555542 211 5667777777777777774
Q ss_pred CcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcc
Q 036985 264 SVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTG 340 (424)
Q Consensus 264 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 340 (424)
..+ +..+++|+.|++++|++++++. . ..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 166 ~~~--l~~l~~L~~L~l~~n~l~~~~~---l----~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 166 LTP--LANLSKLTTLKADDNKISDISP---L----ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCGG---G----GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEECCCCccCcChh---h----cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 332 6677777777777777776532 2 556777777777777775542 6777778888888777764
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=6.6e-22 Score=178.89 Aligned_cols=178 Identities=20% Similarity=0.177 Sum_probs=117.3
Q ss_pred CCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeC
Q 036985 181 SLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSH 258 (424)
Q Consensus 181 ~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 258 (424)
+.++++++++.++..+..+. +.++.|++++|.+++..+..+. ++|++|++++|.+++..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45667777777765444433 4677777777777766665554 6777777777777766666667777777777777
Q ss_pred CcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcC
Q 036985 259 NKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKF 338 (424)
Q Consensus 259 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l 338 (424)
|++++..+..+..+++|++|++++|++++++...+ ..+++|++|++++|++++..+..+..+++|++|+|++|++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF-----DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHh-----ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 77775555666667777777777777766443222 3456777777777777766655666777777777777777
Q ss_pred cccCchhHHhhcCCCCCCCCCccEEEccCCcCccc
Q 036985 339 TGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGA 373 (424)
Q Consensus 339 ~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~ 373 (424)
++..+..+..+.+ |++|++++|.+.+.
T Consensus 168 ~~~~~~~~~~l~~--------L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 168 QSVPHGAFDRLGK--------LQTITLFGNQFDCS 194 (251)
T ss_dssp SCCCTTTTTTCTT--------CCEEECCSCCBCTT
T ss_pred CccCHHHHhCCCC--------CCEEEeeCCceeCC
Confidence 7655555555444 77777777777654
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=5.4e-22 Score=185.01 Aligned_cols=193 Identities=27% Similarity=0.370 Sum_probs=144.5
Q ss_pred CCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 82 ALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
.++++++|+++++.++. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++ ++ .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEE
Confidence 36789999999999975 34 58899999999999999985444 9999999999999999985 33 68999999999
Q ss_pred ecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCC
Q 036985 162 YLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTV 241 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 241 (424)
++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+..-.++|+.|++++|.+++..
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcCh
Confidence 9999999864 3 48999999999999999986544 7888889999998888875433111155666666666665432
Q ss_pred hhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCC
Q 036985 242 PESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTS 287 (424)
Q Consensus 242 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 287 (424)
+ +..+++|++|++++|++++.. .+..+++|+.|++++|.++.
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred h--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 2 555566666666666665332 24555666666666665554
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.6e-21 Score=185.17 Aligned_cols=236 Identities=17% Similarity=0.087 Sum_probs=165.4
Q ss_pred EEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCC-ccccCCCcCce-Eeccc
Q 036985 88 ELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIP-ASIGSLSSLEE-LYLDY 165 (424)
Q Consensus 88 ~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p-~~~~~l~~L~~-L~L~~ 165 (424)
.++.++++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+++
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4555566666 345444 3578888888888885445578888888888888888765554 45778887765 55667
Q ss_pred CcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccC-CcCCCCCCCccc---cCCcEEEcccCcCCCC
Q 036985 166 NNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASD-NAISGKLPAILP---TSLVQISMRNNNLQGT 240 (424)
Q Consensus 166 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~-n~l~~~~~~~~~---~~L~~L~l~~n~l~~~ 240 (424)
|++....|..|..+++|++|++++|.+....+. +....++..+++.+ +.+....+..+. ..++.|++++|+++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 888877777888888888888888888865554 55666777787765 455544444433 5678888888888854
Q ss_pred ChhhhcCCCCCcEEEeeC-CcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCCh
Q 036985 241 VPESLKLLSYLQVVDLSH-NKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLP 319 (424)
Q Consensus 241 ~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 319 (424)
.+..+ ...+|++|++++ |.++...+..|..+++|++|++++|+++.++.. .+.+|+.|.+.++.--..+|
T Consensus 170 ~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--------~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 170 HNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--------GLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp CTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--------SCTTCCEEECTTCTTCCCCC
T ss_pred Chhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--------hhccchHhhhccCCCcCcCC
Confidence 44444 456788888875 566644445678888999999999988886542 34677777776664433555
Q ss_pred hhhcCCCCCCEEeccCC
Q 036985 320 LFMALMPKLSALSLENN 336 (424)
Q Consensus 320 ~~l~~l~~L~~L~L~~N 336 (424)
. +..+++|+.+++.++
T Consensus 241 ~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 T-LEKLVALMEASLTYP 256 (350)
T ss_dssp C-TTTCCSCCEEECSCH
T ss_pred C-chhCcChhhCcCCCC
Confidence 3 778888998888765
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=2e-24 Score=219.69 Aligned_cols=322 Identities=12% Similarity=0.051 Sum_probs=180.5
Q ss_pred CCceeEEEeCCCCCccccCCCcC-CCCCCcEEEccCC-CCCCC-cchhcCCCcCCceEEcccCcccccCCccc----cCC
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSW-NLPYLETLDLSNN-FFSGS-IPESLSNLTRLIRLGLSRNSFSGEIPASI----GSL 155 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~-~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~p~~~----~~l 155 (424)
++++++|+++++.+++..+..+. .+++|++|++++| .+++. ++..+.++++|++|++++|.+++..+..+ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 56788888888888766555554 6788888888888 44432 34444578888888888888775444333 356
Q ss_pred CcCceEecccCc--CCCC-chhhcCCCCCCcEEEeecc-cccccCCC-CCCCCCcCEEEccCCc----------------
Q 036985 156 SSLEELYLDYNN--LEGT-IPASFNGLSSLKRLEIQSN-KLTGEFPE-LGSLKNLYFLDASDNA---------------- 214 (424)
Q Consensus 156 ~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~~~-l~~l~~L~~L~l~~n~---------------- 214 (424)
++|++|++++|. +... ++..+..+++|++|++++| .+.+ .+. +..+++|+.|+++.+.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 788888888876 2211 1122345688888888877 2222 222 4444555555543331
Q ss_pred ----------CCCCCCCcc------ccCCcEEEcccCcCCCCCh-hhhcCCCCCcEEEeeCCcCCCC-cCccccCCCCCC
Q 036985 215 ----------ISGKLPAIL------PTSLVQISMRNNNLQGTVP-ESLKLLSYLQVVDLSHNKLSGS-VPSFVFSHPSLQ 276 (424)
Q Consensus 215 ----------l~~~~~~~~------~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L~ 276 (424)
+.+.....+ .++|++|++++|.+++... ..+..+++|++|++++| +.+. ++.....+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 111111111 1667777777776553222 22446667777777666 3211 111122355566
Q ss_pred EEec----------------------------------cCCcCCCCCCCCCCCCCcccCCCCcEEEcc--C----CCCCC
Q 036985 277 QLTL----------------------------------SFNQFTSIQQPAPTNDNNIFSSQLIAVDIS--N----NELQG 316 (424)
Q Consensus 277 ~L~L----------------------------------~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls--~----n~l~~ 316 (424)
+|++ +.|.+++....... ..+++|++|+++ + +.+++
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~----~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA----RNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH----HHCTTCCEEEEEESSTTCCCTTTC
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH----hhCCCcceeEeecccCCCcccccC
Confidence 6655 33333221100000 134566666666 2 33432
Q ss_pred C-----ChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhh-hhhccCCcEEEc
Q 036985 317 M-----LPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSL-LELQPGSANVRL 390 (424)
Q Consensus 317 ~-----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~-~~l~~~L~~L~l 390 (424)
. ++..+..+++|+.|++++ .+++..+..++. .+++|++|+|++|.+++..+..+ ..+ |+|++|++
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~-------~~~~L~~L~L~~~~i~~~~~~~l~~~~-~~L~~L~L 488 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT-------YAKKMEMLSVAFAGDSDLGMHHVLSGC-DSLRKLEI 488 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH-------HCTTCCEEEEESCCSSHHHHHHHHHHC-TTCCEEEE
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH-------hchhccEeeccCCCCcHHHHHHHHhcC-CCcCEEEC
Confidence 1 112244556666666655 444444444443 13348888888888876666555 455 68899999
Q ss_pred cCCCCCCCC--CccccccCCCcccccccCccC
Q 036985 391 ADNCLYRCP--FSFFFCQGARQKSLVECNRFT 420 (424)
Q Consensus 391 ~~N~l~~ip--~~~~~~~~~l~~l~l~~n~l~ 420 (424)
++|.++... ..+..+. +|+.+++++|+++
T Consensus 489 ~~n~~~~~~~~~~~~~l~-~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 489 RDCPFGDKALLANASKLE-TMRSLWMSSCSVS 519 (594)
T ss_dssp ESCSCCHHHHHHTGGGGG-GSSEEEEESSCCB
T ss_pred cCCCCcHHHHHHHHHhCC-CCCEEeeeCCCCC
Confidence 988885321 2222333 4888888888764
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.2e-20 Score=179.19 Aligned_cols=238 Identities=19% Similarity=0.192 Sum_probs=181.1
Q ss_pred cEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCch-hhcCCCCCCcE-EEee
Q 036985 111 ETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIP-ASFNGLSSLKR-LEIQ 188 (424)
Q Consensus 111 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~l~ 188 (424)
++++.++++++ .+|..+. +++++|+|++|+|+...+.+|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57888999998 6777663 689999999999996656689999999999999999876555 46788988876 5667
Q ss_pred cccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEccc-CcCCCCChhhhcCCC-CCcEEEeeCCcCCC
Q 036985 189 SNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRN-NNLQGTVPESLKLLS-YLQVVDLSHNKLSG 263 (424)
Q Consensus 189 ~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~ 263 (424)
+|+++...+. +..+++|++|++++|++....+..+. .++..+++.+ +.+....+..|..+. .++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 7999988776 89999999999999999877665554 5677788865 566655555666654 6888999999998
Q ss_pred CcCccccCCCCCCEEecc-CCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccC
Q 036985 264 SVPSFVFSHPSLQQLTLS-FNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMI 342 (424)
Q Consensus 264 ~~~~~l~~~~~L~~L~L~-~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 342 (424)
.++.......+|++|++. +|.++.++...+ ..+++|++|++++|+++...+. .+.+|+.|.+.++.-.+.+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f-----~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVF-----HGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTT-----TTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCC
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHh-----ccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcC
Confidence 455555566789999997 477777655443 5678999999999999865443 3556777776666544566
Q ss_pred chhHHhhcCCCCCCCCCccEEEccCCc
Q 036985 343 PTEYAIRVAVPGPGIAPFQRLLLGGNY 369 (424)
Q Consensus 343 ~~~~~~~~~l~~~~~~~L~~L~Ls~N~ 369 (424)
|. +..+.+ |+.++++++.
T Consensus 240 P~-l~~l~~--------L~~l~l~~~~ 257 (350)
T 4ay9_X 240 PT-LEKLVA--------LMEASLTYPS 257 (350)
T ss_dssp CC-TTTCCS--------CCEEECSCHH
T ss_pred CC-chhCcC--------hhhCcCCCCc
Confidence 63 444444 8999987754
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=3.4e-21 Score=192.84 Aligned_cols=201 Identities=24% Similarity=0.377 Sum_probs=129.5
Q ss_pred CCCCCCCCCCCCCCCCcccce-eecCCCCCCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCc
Q 036985 54 SWDFSVDPCDSLFSEKFTCGF-RCDVSVSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLT 132 (424)
Q Consensus 54 ~w~~~~~~C~~~~~~~~~~~~-~c~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 132 (424)
.|....++|... ...|.++ .|.. ++++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..++
T Consensus 35 ~W~~~~~~~~~~--~~~~~~l~~C~~-----~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~ 100 (571)
T 3cvr_A 35 KWEKQALPGENR--NEAVSLLKECLI-----NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPA 100 (571)
T ss_dssp HHHTTCCTTCCH--HHHHHHHHHHHH-----TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCT
T ss_pred HHhccCCccccc--cchhhhcccccc-----CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccC
Confidence 465555667320 0113566 6764 589999999999987 66544 378999999999998 566 4578
Q ss_pred CCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccC
Q 036985 133 RLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASD 212 (424)
Q Consensus 133 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~ 212 (424)
+|++|++++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++. +. .+++|++|++++
T Consensus 101 ~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 101 SLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTML-PE--LPTSLEVLSVRN 169 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCS
T ss_pred CCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcC-CC--cCCCcCEEECCC
Confidence 99999999999986 676 655 89999999999886 555 578888888888888863 33 466777777777
Q ss_pred CcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCC-------cEEEeeCCcCCCCcCccccCCCCCCEEeccCCcC
Q 036985 213 NAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYL-------QVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285 (424)
Q Consensus 213 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L-------~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l 285 (424)
|.+++ +|. +.++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus 170 N~L~~-lp~-l~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 170 NQLTF-LPE-LPESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp SCCSC-CCC-CCTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSC
T ss_pred CCCCC-cch-hhCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcC
Confidence 77765 333 3355555555555555 2332 322 33 44444444444 2344333444444444444444
Q ss_pred C
Q 036985 286 T 286 (424)
Q Consensus 286 ~ 286 (424)
+
T Consensus 243 ~ 243 (571)
T 3cvr_A 243 S 243 (571)
T ss_dssp C
T ss_pred C
Confidence 3
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=4.7e-21 Score=168.19 Aligned_cols=160 Identities=24% Similarity=0.213 Sum_probs=85.0
Q ss_pred CCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEe
Q 036985 108 PYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEI 187 (424)
Q Consensus 108 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 187 (424)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555555444444455555555555555555433334455555555555555555444444455555555555
Q ss_pred ecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCC
Q 036985 188 QSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGS 264 (424)
Q Consensus 188 ~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 264 (424)
++|.+++..+. +..+++|++|++++|.+++..+..+. ++|++|++++|.+.+ .+++|+.|+++.|+++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 55555544443 45555555555555555544443333 455555555554442 245566667777777766
Q ss_pred cCccccCCCC
Q 036985 265 VPSFVFSHPS 274 (424)
Q Consensus 265 ~~~~l~~~~~ 274 (424)
+|..++.++.
T Consensus 181 ip~~~~~l~~ 190 (208)
T 2o6s_A 181 VRNSAGSVAP 190 (208)
T ss_dssp BBCTTSSBCT
T ss_pred eeccCccccC
Confidence 6666655443
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=3.7e-23 Score=210.43 Aligned_cols=332 Identities=15% Similarity=0.129 Sum_probs=207.3
Q ss_pred CCCceeEEEeCCCCCcccc---C------------CCcCCCCCCcEEEccCCCCCCCcchhcC-CCcCCceEEcccC-cc
Q 036985 82 ALSRVTELNLDQAGYSGSL---S------------TTSWNLPYLETLDLSNNFFSGSIPESLS-NLTRLIRLGLSRN-SF 144 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~~~~---~------------~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n-~i 144 (424)
.++++++|+++++...... | .....+++|++|++++|.+++..+..+. .+++|++|++++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 3578999999987632211 1 1124688999999999999877666675 6899999999999 55
Q ss_pred ccc-CCccccCCCcCceEecccCcCCCCchhhc----CCCCCCcEEEeeccc--cccc-CCC-CCCCCCcCEEEccCCc-
Q 036985 145 SGE-IPASIGSLSSLEELYLDYNNLEGTIPASF----NGLSSLKRLEIQSNK--LTGE-FPE-LGSLKNLYFLDASDNA- 214 (424)
Q Consensus 145 ~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~--l~~~-~~~-l~~l~~L~~L~l~~n~- 214 (424)
+.. ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. +... ... ...+++|++|++++|.
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 532 34445579999999999999876554444 367899999999987 2211 111 3457999999999883
Q ss_pred CCCCCCCccc--cCCcEEEcccCc--------------------------CCC----CChhhhcCCCCCcEEEeeCCcCC
Q 036985 215 ISGKLPAILP--TSLVQISMRNNN--------------------------LQG----TVPESLKLLSYLQVVDLSHNKLS 262 (424)
Q Consensus 215 l~~~~~~~~~--~~L~~L~l~~n~--------------------------l~~----~~~~~l~~l~~L~~L~Ls~n~l~ 262 (424)
+.+ .+..+. ++|++|+++.+. +.. .++..+..+++|++|++++|.++
T Consensus 224 ~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 224 LEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp HHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred HHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC
Confidence 222 222222 678888755442 111 22333446799999999999977
Q ss_pred CCc-CccccCCCCCCEEeccCCcCCCCCCCCCC----------------------CCC--------cccCCCCcEEEccC
Q 036985 263 GSV-PSFVFSHPSLQQLTLSFNQFTSIQQPAPT----------------------NDN--------NIFSSQLIAVDISN 311 (424)
Q Consensus 263 ~~~-~~~l~~~~~L~~L~L~~n~l~~~~~~~~~----------------------~~~--------~~~~~~L~~L~Ls~ 311 (424)
+.. ...+..+++|++|++++| +++....... ... ...+++|++|++..
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 432 233568899999999988 3321110000 000 01245555555555
Q ss_pred CCCCCCChhhhc-CCCCCCEEecc--C----CcCcccCc-hhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhcc
Q 036985 312 NELQGMLPLFMA-LMPKLSALSLE--N----NKFTGMIP-TEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQP 383 (424)
Q Consensus 312 n~l~~~~~~~l~-~l~~L~~L~L~--~----N~l~~~~~-~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~ 383 (424)
|.+++.....+. .+++|+.|+++ + +.+++... ..+..... .+++|++|++++ .+++..+..+....+
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~----~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE----HCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHH----HCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHh----hCCCccEEeecC-cccHHHHHHHHHhch
Confidence 555543333333 46677777776 3 34442111 11111100 233488888877 666666666665226
Q ss_pred CCcEEEccCCCCCCC-CCccccccCCCcccccccCccC
Q 036985 384 GSANVRLADNCLYRC-PFSFFFCQGARQKSLVECNRFT 420 (424)
Q Consensus 384 ~L~~L~l~~N~l~~i-p~~~~~~~~~l~~l~l~~n~l~ 420 (424)
+|++|++++|.++.. +..+.....+|+.+++++|+++
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 899999999988632 2222122334999999999874
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2.8e-20 Score=186.19 Aligned_cols=196 Identities=26% Similarity=0.352 Sum_probs=106.9
Q ss_pred CCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccC
Q 036985 133 RLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASD 212 (424)
Q Consensus 133 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~ 212 (424)
+|++|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++.+. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 44444444444442 333221 34444444444444 233 223444444444444443222 222 455555555
Q ss_pred CcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCC
Q 036985 213 NAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPA 292 (424)
Q Consensus 213 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~ 292 (424)
|.+++ ++. ..++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|+|+.++.
T Consensus 130 N~l~~-lp~-~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-- 197 (571)
T 3cvr_A 130 NQLTM-LPE-LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-- 197 (571)
T ss_dssp SCCSC-CCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC--
T ss_pred CcCCC-CCC-cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh--
Confidence 55544 222 23455555555555554 333 45677777777777775 555 44 778888888887776543
Q ss_pred CCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcC
Q 036985 293 PTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVA 351 (424)
Q Consensus 293 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 351 (424)
+........+.|+.|++++|.++. +|..+..+++|+.|+|++|.+++.+|..+..+..
T Consensus 198 ~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 198 VPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HHHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 210000111223888888888884 5666666888888888888888888877776544
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=3e-20 Score=163.03 Aligned_cols=177 Identities=22% Similarity=0.213 Sum_probs=87.1
Q ss_pred EEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeeccc
Q 036985 112 TLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNK 191 (424)
Q Consensus 112 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 191 (424)
.++.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4555555554 333322 2356666666666654444445555566666666555554444444555555555555555
Q ss_pred ccccCCC-CCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCcccc
Q 036985 192 LTGEFPE-LGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVF 270 (424)
Q Consensus 192 l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 270 (424)
+++..+. +..+++|++|++++|.++ +..+..+..+++|++|++++|++++..+..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~----------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQ----------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC----------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCc----------------------ccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence 5433333 344444444444443333 22333344555555555555555544444445
Q ss_pred CCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCC
Q 036985 271 SHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALM 325 (424)
Q Consensus 271 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 325 (424)
.+++|++|++++|.+.. .++.|++|+++.|++++.+|..++.+
T Consensus 146 ~l~~L~~L~l~~N~~~~------------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWDC------------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TCTTCCEEECCSCCBCC------------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred cCCCccEEEecCCCeec------------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 55555555555554332 12344555555555555555444433
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.5e-19 Score=166.95 Aligned_cols=169 Identities=25% Similarity=0.348 Sum_probs=79.3
Q ss_pred CCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEE
Q 036985 106 NLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRL 185 (424)
Q Consensus 106 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 185 (424)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+ + ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEE
Confidence 45555555555555542 22 25555555555555555553322 5555555555555555543 2 235555555555
Q ss_pred EeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCC
Q 036985 186 EIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSG 263 (424)
Q Consensus 186 ~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 263 (424)
++++|.+++. +.+..+++|+.|++++|.+++. ..+. ++|+.|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 118 ~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 118 SLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 5555555532 3344455555555555544432 1111 333333333333332222 4444444445554444442
Q ss_pred CcCccccCCCCCCEEeccCCcCCC
Q 036985 264 SVPSFVFSHPSLQQLTLSFNQFTS 287 (424)
Q Consensus 264 ~~~~~l~~~~~L~~L~L~~n~l~~ 287 (424)
++ .+..+++|+.|++++|+++.
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -Ch-hhccCCCCCEEECcCCcccC
Confidence 22 24444444444444444443
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.8e-19 Score=165.20 Aligned_cols=191 Identities=20% Similarity=0.273 Sum_probs=152.3
Q ss_pred EEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCC
Q 036985 185 LEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGS 264 (424)
Q Consensus 185 L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 264 (424)
+.+..+.+.+. .....+++|+.|++++|.+.........++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 29 ~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~- 104 (291)
T 1h6t_A 29 DNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD- 104 (291)
T ss_dssp HHTTCSCTTSE-ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred HHhcCCCcccc-cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-
Confidence 34444444432 2245678899999999999865332222899999999999996544 8899999999999999985
Q ss_pred cCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCch
Q 036985 265 VPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPT 344 (424)
Q Consensus 265 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 344 (424)
++ .+..+++|++|++++|++++++. + ..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+
T Consensus 105 ~~-~l~~l~~L~~L~L~~n~i~~~~~---l----~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 105 LS-SLKDLKKLKSLSLEHNGISDING---L----VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp GG-GGTTCTTCCEEECTTSCCCCCGG---G----GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred Ch-hhccCCCCCEEECCCCcCCCChh---h----cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-
Confidence 33 48899999999999999988531 2 6789999999999999976 568999999999999999987544
Q ss_pred hHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCcc
Q 036985 345 EYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSF 402 (424)
Q Consensus 345 ~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~ 402 (424)
+..+.+ |++|++++|++++ +| .+..+ ++|+.|++++|+++..|...
T Consensus 174 -l~~l~~--------L~~L~L~~N~i~~-l~-~l~~l-~~L~~L~l~~n~i~~~~~~~ 219 (291)
T 1h6t_A 174 -LAGLTK--------LQNLYLSKNHISD-LR-ALAGL-KNLDVLELFSQECLNKPINH 219 (291)
T ss_dssp -GTTCTT--------CCEEECCSSCCCB-CG-GGTTC-TTCSEEEEEEEEEECCCEEC
T ss_pred -hcCCCc--------cCEEECCCCcCCC-Ch-hhccC-CCCCEEECcCCcccCCcccc
Confidence 665555 9999999999985 44 48888 59999999999998777544
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=1e-19 Score=183.98 Aligned_cols=189 Identities=24% Similarity=0.327 Sum_probs=121.6
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
..+..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..| +..+++|++|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 344555566666654433 4567777888888887763 33 47777888888888887775433 777778888888
Q ss_pred ccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCC
Q 036985 164 DYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTV 241 (424)
Q Consensus 164 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~ 241 (424)
++|.+.+ + ..+..+++|++|++++|.+.+ ++.+..+++|+.|++++|.+++. ..+. ++|+.|+|++|.+.+..
T Consensus 95 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 95 DENKIKD-L-SSLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp CSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred cCCCCCC-C-hhhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 8887764 2 367777777777777777774 34466777777777777776654 2222 56666666666666443
Q ss_pred hhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCC
Q 036985 242 PESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTS 287 (424)
Q Consensus 242 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 287 (424)
+ +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+..
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 3 55666666666666666532 235556666666666666655
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=2.6e-19 Score=170.63 Aligned_cols=178 Identities=22% Similarity=0.191 Sum_probs=91.0
Q ss_pred EEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhc-CCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcC
Q 036985 207 FLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLK-LLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285 (424)
Q Consensus 207 ~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l 285 (424)
.++++++.++. +|..+...++.|++++|.+++..+..+. .+++|++|++++|++++..+..+..+++|++|+|++|++
T Consensus 22 ~l~c~~~~l~~-iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EEECCSSCCSS-CCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCc-cCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 44555555442 3334444455555555555554444454 556666666666666544445555566666666666665
Q ss_pred CCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEc
Q 036985 286 TSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLL 365 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~L 365 (424)
+.++...+ ..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+.... .+++|+.|+|
T Consensus 101 ~~~~~~~~-----~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-----~l~~L~~L~L 170 (361)
T 2xot_A 101 HTLDEFLF-----SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN-----KLPKLMLLDL 170 (361)
T ss_dssp CEECTTTT-----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---------CTTCCEEEC
T ss_pred CcCCHHHh-----CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc-----cCCcCCEEEC
Confidence 55432222 3455566666666666555555556666666666666666542222221100 1222666666
Q ss_pred cCCcCccccChhhhhhccC--CcEEEccCCCCC
Q 036985 366 GGNYLFGAIPRSLLELQPG--SANVRLADNCLY 396 (424)
Q Consensus 366 s~N~l~~~~p~~~~~l~~~--L~~L~l~~N~l~ 396 (424)
++|+|++..+..+..+ +. ++.|++++|++.
T Consensus 171 ~~N~l~~l~~~~~~~l-~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKL-PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CSSCCCCCCHHHHHHS-CHHHHTTEECCSSCEE
T ss_pred CCCCCCccCHHHhhhc-cHhhcceEEecCCCcc
Confidence 6666654333444444 23 255666666553
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1e-18 Score=155.55 Aligned_cols=132 Identities=25% Similarity=0.218 Sum_probs=66.2
Q ss_pred CCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEe
Q 036985 108 PYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEI 187 (424)
Q Consensus 108 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 187 (424)
++|++|++++|.+++..+..|.++++|++|++++|.+....+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44555555555555444445555555555555555554333334455555555555555555444444455555555555
Q ss_pred ecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCC
Q 036985 188 QSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQG 239 (424)
Q Consensus 188 ~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~ 239 (424)
++|.++..+..+..+++|++|++++|.+++..+..+. ++|+.|++++|.+..
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 5555553333345555555555555555544433333 455555555555543
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.2e-18 Score=154.11 Aligned_cols=153 Identities=21% Similarity=0.263 Sum_probs=111.6
Q ss_pred CEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcC
Q 036985 206 YFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285 (424)
Q Consensus 206 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l 285 (424)
+.++++++.++ .+|..+.++++.|++++|.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCS-SCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcC-cCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 45666666665 34444556777777777777766666777788888888888888766677788888888888888888
Q ss_pred CCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEc
Q 036985 286 TSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLL 365 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~L 365 (424)
+.++...+ ..+++|++|+|++|.+++..+..|..+++|+.|+|++|.+++..+..+..+.+ |++|++
T Consensus 93 ~~l~~~~f-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--------L~~L~L 159 (220)
T 2v9t_B 93 TELPKSLF-----EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA--------IQTMHL 159 (220)
T ss_dssp CCCCTTTT-----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT--------CCEEEC
T ss_pred CccCHhHc-----cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC--------CCEEEe
Confidence 77544332 45677888888888888777777888888888888888887666666665555 888888
Q ss_pred cCCcCcc
Q 036985 366 GGNYLFG 372 (424)
Q Consensus 366 s~N~l~~ 372 (424)
++|.+..
T Consensus 160 ~~N~~~c 166 (220)
T 2v9t_B 160 AQNPFIC 166 (220)
T ss_dssp CSSCEEC
T ss_pred CCCCcCC
Confidence 8887753
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=7.2e-19 Score=167.57 Aligned_cols=173 Identities=23% Similarity=0.184 Sum_probs=137.4
Q ss_pred eEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcC-CCcCCceEEcccCcccccCCccccCCCcCceEeccc
Q 036985 87 TELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLS-NLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDY 165 (424)
Q Consensus 87 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~ 165 (424)
+.++++++.++. +|..+. +.++.|+|++|.+++..+..+. ++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 467888888874 454442 4588999999999876666777 889999999999999877777889999999999999
Q ss_pred CcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCcc-----ccCCcEEEcccCcCCC
Q 036985 166 NNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAIL-----PTSLVQISMRNNNLQG 239 (424)
Q Consensus 166 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~-----~~~L~~L~l~~n~l~~ 239 (424)
|.+....+..|..+++|++|++++|.+++..+. +..+++|+.|++++|.+++.....+ .++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 999877777788899999999999999877665 8888999999999998886555444 2678888888888886
Q ss_pred CChhhhcCCCC--CcEEEeeCCcCC
Q 036985 240 TVPESLKLLSY--LQVVDLSHNKLS 262 (424)
Q Consensus 240 ~~~~~l~~l~~--L~~L~Ls~n~l~ 262 (424)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 66667777776 377888887765
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=154.09 Aligned_cols=153 Identities=17% Similarity=0.206 Sum_probs=84.4
Q ss_pred EEEccCCcCCCCCCCccccCCcEEEcccCcCCCCCh-hhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcC
Q 036985 207 FLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVP-ESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285 (424)
Q Consensus 207 ~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l 285 (424)
.+++++|.++. +|..+...+++|++++|.+++..+ ..|..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 15 ~l~~s~n~l~~-iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSS-CCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCccc-CccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 45555555542 333444445555555555554422 3355566666666666666654444555666666666666666
Q ss_pred CCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEc
Q 036985 286 TSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLL 365 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~L 365 (424)
++++...+ ..+++|++|++++|.+++..|..+..+++|++|+|++|++++..|..+..+.+ |++|++
T Consensus 94 ~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--------L~~L~L 160 (220)
T 2v70_A 94 ENVQHKMF-----KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS--------LSTLNL 160 (220)
T ss_dssp CCCCGGGG-----TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTT--------CCEEEC
T ss_pred CccCHhHh-----cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCC--------CCEEEe
Confidence 55432211 34556666666666666555555666666666666666666555555554444 666666
Q ss_pred cCCcCccc
Q 036985 366 GGNYLFGA 373 (424)
Q Consensus 366 s~N~l~~~ 373 (424)
++|.+...
T Consensus 161 ~~N~l~c~ 168 (220)
T 2v70_A 161 LANPFNCN 168 (220)
T ss_dssp CSCCEECS
T ss_pred cCcCCcCC
Confidence 66665543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.6e-18 Score=151.89 Aligned_cols=130 Identities=25% Similarity=0.294 Sum_probs=97.4
Q ss_pred eEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccC
Q 036985 87 TELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYN 166 (424)
Q Consensus 87 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 166 (424)
+.++++++.++. +|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 467788888774 454443 67888999998888666667888888888888888888777888888888888888888
Q ss_pred cCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCC
Q 036985 167 NLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKL 219 (424)
Q Consensus 167 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~ 219 (424)
.++...+..|..+++|++|++++|.+++..+. +..+++|++|++++|.+++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 88865555667777888888887777766555 666666666666666665433
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=6.4e-19 Score=153.11 Aligned_cols=151 Identities=14% Similarity=0.141 Sum_probs=71.3
Q ss_pred cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCC
Q 036985 225 TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQL 304 (424)
Q Consensus 225 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L 304 (424)
++|+.|++++|.++ .++ .+..+++|++|++++|.++. +..+..+++|++|++++|++++.... .+ ..+++|
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~-~l----~~l~~L 114 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIP-NL----SGLTSL 114 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSC-CC----TTCTTC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccCh-hh----cCCCCC
Confidence 45555555555555 222 35555555555555554431 22444555555555555555542111 12 344555
Q ss_pred cEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccC
Q 036985 305 IAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPG 384 (424)
Q Consensus 305 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~ 384 (424)
++|++++|.+++..+..+..+++|++|++++|...+.++ .+..+++ |++|++++|++++ ++ .+..+ |+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~--------L~~L~l~~n~i~~-~~-~l~~l-~~ 182 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPE--------LKSLNIQFDGVHD-YR-GIEDF-PK 182 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSS--------CCEEECTTBCCCC-CT-TGGGC-SS
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCC--------CCEEECCCCCCcC-hH-HhccC-CC
Confidence 555555555554444555555555555555554222233 3333333 5555555555543 22 34444 35
Q ss_pred CcEEEccCCCCC
Q 036985 385 SANVRLADNCLY 396 (424)
Q Consensus 385 L~~L~l~~N~l~ 396 (424)
|++|++++|+|+
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 555555555543
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=153.12 Aligned_cols=157 Identities=19% Similarity=0.236 Sum_probs=134.3
Q ss_pred CCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcC-ccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCC
Q 036985 226 SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVP-SFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQL 304 (424)
Q Consensus 226 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L 304 (424)
.-+.+++++|.++. +|..+ ...+++|++++|++++..+ ..+..+++|++|++++|++++++...+ ..+++|
T Consensus 12 ~~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-----~~l~~L 83 (220)
T 2v70_A 12 EGTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-----EGASGV 83 (220)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-----TTCTTC
T ss_pred CCCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh-----CCCCCC
Confidence 34689999999985 55544 3567899999999997644 457889999999999999998654333 678999
Q ss_pred cEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccC
Q 036985 305 IAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPG 384 (424)
Q Consensus 305 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~ 384 (424)
++|++++|.+++..+..|..+++|++|+|++|++++..|..+..+.+ |++|+|++|++++..|..|..+ ++
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--------L~~L~L~~N~l~~~~~~~~~~l-~~ 154 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS--------VRLLSLYDNQITTVAPGAFDTL-HS 154 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT--------CSEEECTTSCCCCBCTTTTTTC-TT
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc--------CCEEECCCCcCCEECHHHhcCC-CC
Confidence 99999999999988888999999999999999999888888887766 9999999999998889999999 59
Q ss_pred CcEEEccCCCCC-CCC
Q 036985 385 SANVRLADNCLY-RCP 399 (424)
Q Consensus 385 L~~L~l~~N~l~-~ip 399 (424)
|++|++++|+++ .++
T Consensus 155 L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 155 LSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCEEECCSCCEECSGG
T ss_pred CCEEEecCcCCcCCCc
Confidence 999999999986 443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=5.1e-18 Score=151.05 Aligned_cols=156 Identities=20% Similarity=0.182 Sum_probs=115.1
Q ss_pred cCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCc
Q 036985 205 LYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQ 284 (424)
Q Consensus 205 L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~ 284 (424)
.+.++.+++.++ .+|..+.++++.|++++|.+++..+..+..+++|++|++++|+++...+..+..+++|++|++++|+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcC-ccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 456788777776 4555566788888888888887777778888888888888888875555667778888888888888
Q ss_pred CCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEE
Q 036985 285 FTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLL 364 (424)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~ 364 (424)
+++++...+ ..+++|++|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..+.+ |+.|+
T Consensus 100 l~~l~~~~~-----~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--------L~~L~ 165 (229)
T 3e6j_A 100 LTVLPSAVF-----DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS--------LTHAY 165 (229)
T ss_dssp CCCCCTTTT-----TTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT--------CCEEE
T ss_pred CCccChhHh-----CcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCC--------CCEEE
Confidence 877543322 45678888888888887 55667778888888888888887655555655555 88888
Q ss_pred ccCCcCccccC
Q 036985 365 LGGNYLFGAIP 375 (424)
Q Consensus 365 Ls~N~l~~~~p 375 (424)
+++|.+....+
T Consensus 166 l~~N~~~c~c~ 176 (229)
T 3e6j_A 166 LFGNPWDCECR 176 (229)
T ss_dssp CTTSCBCTTBG
T ss_pred eeCCCccCCcc
Confidence 88887765543
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=5.2e-18 Score=171.56 Aligned_cols=192 Identities=20% Similarity=0.240 Sum_probs=129.9
Q ss_pred CCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEccc
Q 036985 155 LSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRN 234 (424)
Q Consensus 155 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 234 (424)
+.++..+.+..+.+.... .+..+++|+.|++++|.+... +.+..+++|+.|++++|.+.+..+..-.++|+.|+|++
T Consensus 20 l~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred HHHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcC
Confidence 345556667767666443 245678899999999988854 46888888999999888887655422227777777777
Q ss_pred CcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCC
Q 036985 235 NNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNEL 314 (424)
Q Consensus 235 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 314 (424)
|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++++ .+ ..+++|++|+|++|.+
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~---~l----~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT---VL----SRLTKLDTLSLEDNQI 165 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCCG---GG----GSCTTCSEEECCSSCC
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCch---hh----cccCCCCEEECcCCcC
Confidence 777643 2566777777777777777642 34666777777777777777641 12 4567777777777777
Q ss_pred CCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCcc
Q 036985 315 QGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFG 372 (424)
Q Consensus 315 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~ 372 (424)
.+..| +..+++|+.|+|++|++++. + .+..+.+ |+.|+|++|++++
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~--------L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKN--------LDVLELFSQECLN 211 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTT--------CSEEECCSEEEEC
T ss_pred CCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCC--------CCEEEccCCcCcC
Confidence 76554 67777777777777777653 2 3444444 7777777777764
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2.9e-18 Score=148.91 Aligned_cols=151 Identities=16% Similarity=0.225 Sum_probs=112.4
Q ss_pred CCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEe
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELY 162 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 162 (424)
++++++|++++|.++ .++ .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 567888888888887 344 5778888888888888765 2 33688888888888888888877778888888888888
Q ss_pred cccCcCCCCchhhcCCCCCCcEEEeeccc-ccccCCCCCCCCCcCEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCC
Q 036985 163 LDYNNLEGTIPASFNGLSSLKRLEIQSNK-LTGEFPELGSLKNLYFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTV 241 (424)
Q Consensus 163 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 241 (424)
+++|.+.+..+..+..+++|++|++++|. ++ ..+.+..+++|++|++++|.+++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~i~~~----------------------- 174 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHDY----------------------- 174 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCGGGGGCSSCCEEECTTBCCCCC-----------------------
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccHhhcCCCCCCEEECCCCCCcCh-----------------------
Confidence 88888887777888888888888888887 54 334566777777777777666532
Q ss_pred hhhhcCCCCCcEEEeeCCcCC
Q 036985 242 PESLKLLSYLQVVDLSHNKLS 262 (424)
Q Consensus 242 ~~~l~~l~~L~~L~Ls~n~l~ 262 (424)
+ .+..+++|++|++++|++.
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp T-TGGGCSSCCEEEECBC---
T ss_pred H-HhccCCCCCEEEeeCcccC
Confidence 1 4556677777777777665
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=2.9e-21 Score=194.12 Aligned_cols=120 Identities=22% Similarity=0.218 Sum_probs=62.0
Q ss_pred CcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCE
Q 036985 251 LQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSA 330 (424)
Q Consensus 251 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 330 (424)
|+.|++++|.+++ +|. +..+++|+.|++++|.++.++ ..+ ..+++|++|+|++|.+++ +| .++.+++|+.
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp--~~~----~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~ 512 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALP--PAL----AALRCLEVLQASDNALEN-VD-GVANLPRLQE 512 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCC--GGG----GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCE
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccc--hhh----hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcE
Confidence 4555555555553 333 455555555555555555332 122 445555555555555554 34 4555666666
Q ss_pred EeccCCcCcccC-chhHHhhcCCCCCCCCCccEEEccCCcCccccChh---hhhhccCCcEEE
Q 036985 331 LSLENNKFTGMI-PTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRS---LLELQPGSANVR 389 (424)
Q Consensus 331 L~L~~N~l~~~~-~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~---~~~l~~~L~~L~ 389 (424)
|+|++|++++.. |..+..+.+ |+.|+|++|.+++..|.. +..+ |+|+.|+
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~--------L~~L~L~~N~l~~~~~~~~~l~~~l-p~L~~L~ 566 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPR--------LVLLNLQGNSLCQEEGIQERLAEML-PSVSSIL 566 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTT--------CCEEECTTSGGGGSSSCTTHHHHHC-TTCSEEE
T ss_pred EECCCCCCCCCCCcHHHhcCCC--------CCEEEecCCcCCCCccHHHHHHHHC-cccCccC
Confidence 666666665554 555555544 666666666665443321 1223 4666654
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=6.3e-20 Score=189.97 Aligned_cols=233 Identities=21% Similarity=0.167 Sum_probs=111.4
Q ss_pred CCCHhHHHHHHHHHhhCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCcccceeecCCCCCCCceeEEEeCCCCCccccCCC
Q 036985 25 KTYWGDIQVMKELKNSLDPNSVSPGSCLSSWDFSV-DPCDSLFSEKFTCGFRCDVSVSALSRVTELNLDQAGYSGSLSTT 103 (424)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~~~-~~C~~~~~~~~~~~~~c~~~~~~~~~l~~L~L~~~~l~~~~~~~ 103 (424)
...+.+.+++.++...+.. ..+.....|.... ..+.| .+..+.. ++++.|+|.++.+... +..
T Consensus 128 s~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~s~-----~~~~~l~L~~n~~~~~-~~~ 191 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTD---SKTAKKQQPTGDSTPSGTA-------TNSAVST-----PLTPKIELFANGKDEA-NQA 191 (727)
T ss_dssp ----CCCHHHHHHHHHHHH---HHTTC-----------------------------------------------------
T ss_pred hccccchhhhhhhhhhccc---ccCcccCCCcCCCCccccC-------CCceecC-----CccceEEeeCCCCCcc-hhh
Confidence 3455667778887766521 1111223453322 22333 3444332 6789999988888753 332
Q ss_pred cCCCCCCcE-----EEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCC
Q 036985 104 SWNLPYLET-----LDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNG 178 (424)
Q Consensus 104 ~~~l~~L~~-----L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 178 (424)
+.....|+. +++..|.+. ..+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.+
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 268 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN 268 (727)
T ss_dssp -------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG
T ss_pred HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC
Confidence 222222222 223333343 45677888899999999999888 67777778899999999999988 77888888
Q ss_pred CCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCChhhhcCCCC-CcEEE
Q 036985 179 LSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTVPESLKLLSY-LQVVD 255 (424)
Q Consensus 179 l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~ 255 (424)
+++|++|+|++|.++..+..+..+++|++|+|++|.++ .+|..+. ++|+.|+|++|.+++.+|..+..... ...++
T Consensus 269 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp GTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 99999999999998854444888888888888888876 4444444 66777777777776666655543321 12356
Q ss_pred eeCCcCCCCcCccccCCCCCCEEeccCC
Q 036985 256 LSHNKLSGSVPSFVFSHPSLQQLTLSFN 283 (424)
Q Consensus 256 Ls~n~l~~~~~~~l~~~~~L~~L~L~~n 283 (424)
+++|.+++.+|. .|+.|+++.|
T Consensus 348 l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 348 LRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp HHHCCCCCCCCC------C---------
T ss_pred hccCcccCcCcc------ccceeEeecc
Confidence 667766655553 3444555554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.4e-18 Score=157.91 Aligned_cols=62 Identities=19% Similarity=0.379 Sum_probs=25.9
Q ss_pred cCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeeccccc
Q 036985 128 LSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLT 193 (424)
Q Consensus 128 ~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 193 (424)
+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|+++
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC
Confidence 334444444444444444 222 33444444444444444443222 444444444444444444
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=2.4e-18 Score=156.42 Aligned_cols=148 Identities=24% Similarity=0.311 Sum_probs=95.8
Q ss_pred CCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEE
Q 036985 130 NLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLD 209 (424)
Q Consensus 130 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 209 (424)
++.+++.++++++.+++. + .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 456677888888888843 3 57788999999999998874 44 68888999999999999887655 88888888888
Q ss_pred ccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCC
Q 036985 210 ASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTS 287 (424)
Q Consensus 210 l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 287 (424)
+++|.+++..+... ++|+.|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|++|++++|++++
T Consensus 92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTTCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCcccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 88888875332222 4555555555555432 2344444455555555444432 1 34444444444444444444
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.8e-20 Score=188.35 Aligned_cols=110 Identities=23% Similarity=0.226 Sum_probs=64.7
Q ss_pred CCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCC
Q 036985 274 SLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVP 353 (424)
Q Consensus 274 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 353 (424)
.|+.|++++|.+++++. + ..+++|++|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+.+
T Consensus 442 ~L~~L~Ls~n~l~~lp~---~----~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~-- 509 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH---L----EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPR-- 509 (567)
T ss_dssp TCSEEECTTSCCSSCCC---G----GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSS--
T ss_pred CceEEEecCCCCCCCcC---c----cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCC--
Confidence 35666666666665421 2 45566666666666666 445566666666666666666664 44 4444444
Q ss_pred CCCCCCccEEEccCCcCcccc-ChhhhhhccCCcEEEccCCCCCCCCCcc
Q 036985 354 GPGIAPFQRLLLGGNYLFGAI-PRSLLELQPGSANVRLADNCLYRCPFSF 402 (424)
Q Consensus 354 ~~~~~~L~~L~Ls~N~l~~~~-p~~~~~l~~~L~~L~l~~N~l~~ip~~~ 402 (424)
|++|+|++|++++.. |..+..+ ++|+.|++++|+|+.+|...
T Consensus 510 ------L~~L~Ls~N~l~~~~~p~~l~~l-~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 510 ------LQELLLCNNRLQQSAAIQPLVSC-PRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp ------CCEEECCSSCCCSSSTTGGGGGC-TTCCEEECTTSGGGGSSSCT
T ss_pred ------CcEEECCCCCCCCCCCcHHHhcC-CCCCEEEecCCcCCCCccHH
Confidence 666666666666554 6666666 36666666666666555443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=4.2e-17 Score=137.73 Aligned_cols=140 Identities=18% Similarity=0.133 Sum_probs=112.8
Q ss_pred CCCCCcEEEeeCCcCC-CCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCC
Q 036985 247 LLSYLQVVDLSHNKLS-GSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALM 325 (424)
Q Consensus 247 ~l~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 325 (424)
..++|++|++++|.++ +.+|..+..+++|++|++++|.++++ ..+ ..+++|++|++++|.+++.+|..+..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNL----PKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSC----CCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhh----ccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 3477889999999887 66777778888999999999988875 222 567899999999999988788888889
Q ss_pred CCCCEEeccCCcCcccC-chhHHhhcCCCCCCCCCccEEEccCCcCccccC---hhhhhhccCCcEEEccCCCCCCCCCc
Q 036985 326 PKLSALSLENNKFTGMI-PTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIP---RSLLELQPGSANVRLADNCLYRCPFS 401 (424)
Q Consensus 326 ~~L~~L~L~~N~l~~~~-~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p---~~~~~l~~~L~~L~l~~N~l~~ip~~ 401 (424)
++|++|++++|.+++.. +..+..+.+ |++|++++|.+++..+ ..+..+ |+|++|++++|.++++|..
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~--------L~~L~l~~N~l~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLEC--------LKSLDLFNCEVTNLNDYRESVFKLL-PQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSC--------CCEEECCSSGGGTSTTHHHHHHTTC-SSCCEETTEETTSCBCCSS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCC--------CCEEEeeCCcCcchHHHHHHHHHhC-ccCcEecCCCCChhhcccc
Confidence 99999999999998642 255665555 9999999999986554 467778 6999999999999998875
Q ss_pred c
Q 036985 402 F 402 (424)
Q Consensus 402 ~ 402 (424)
.
T Consensus 166 ~ 166 (168)
T 2ell_A 166 D 166 (168)
T ss_dssp S
T ss_pred c
Confidence 3
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=2e-17 Score=143.01 Aligned_cols=130 Identities=23% Similarity=0.326 Sum_probs=111.8
Q ss_pred eEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcch-hcCCCcCCceEEcccCcccccCCccccCCCcCceEeccc
Q 036985 87 TELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPE-SLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDY 165 (424)
Q Consensus 87 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~ 165 (424)
+.++++++.++ .+|..+. +.+++|++++|.+++..+. .|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67889999886 4565443 3899999999999866554 488999999999999999988899999999999999999
Q ss_pred CcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCC
Q 036985 166 NNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKL 219 (424)
Q Consensus 166 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~ 219 (424)
|++++..+..|.++++|++|++++|++++..+. +..+++|++|++++|.+.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 999988888899999999999999999988776 888999999999999887543
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=5.6e-17 Score=136.96 Aligned_cols=135 Identities=26% Similarity=0.282 Sum_probs=116.2
Q ss_pred CCCceeEEEeCCCCCc-cccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCce
Q 036985 82 ALSRVTELNLDQAGYS-GSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEE 160 (424)
Q Consensus 82 ~~~~l~~L~L~~~~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 160 (424)
..++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3578999999999998 67788888999999999999999865 67889999999999999999778887888999999
Q ss_pred EecccCcCCCCc-hhhcCCCCCCcEEEeecccccccCC----CCCCCCCcCEEEccCCcCCCC
Q 036985 161 LYLDYNNLEGTI-PASFNGLSSLKRLEIQSNKLTGEFP----ELGSLKNLYFLDASDNAISGK 218 (424)
Q Consensus 161 L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~----~l~~l~~L~~L~l~~n~l~~~ 218 (424)
|++++|.+++.. +..+..+++|++|++++|.+++..+ .+..+++|++|++++|.+...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 999999998643 2788899999999999999998776 388899999999999887643
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1e-16 Score=138.49 Aligned_cols=133 Identities=18% Similarity=0.225 Sum_probs=94.5
Q ss_pred CcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCc-cccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCc
Q 036985 227 LVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPS-FVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLI 305 (424)
Q Consensus 227 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~ 305 (424)
-+.+++++|.++ .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|+++++....+ ..+++|+
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~ 81 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-----EGASHIQ 81 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-----TTCTTCC
T ss_pred CCEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-----CCcccCC
Confidence 367778888776 4454443 3778888888888755443 36777888888888888877533322 5667788
Q ss_pred EEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccC
Q 036985 306 AVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIP 375 (424)
Q Consensus 306 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p 375 (424)
+|++++|++++..+..+..+++|++|+|++|++++..|..+..+.+ |++|++++|.+++..+
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--------L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS--------LTSLNLASNPFNCNCH 143 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT--------CCEEECTTCCBCCSGG
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC--------CCEEEeCCCCccCcCc
Confidence 8888888887777767777788888888888887777777666555 8888888887776554
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=7.5e-18 Score=174.42 Aligned_cols=193 Identities=25% Similarity=0.311 Sum_probs=122.8
Q ss_pred ceeEEEeCCCCCcc---------ccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCC
Q 036985 85 RVTELNLDQAGYSG---------SLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSL 155 (424)
Q Consensus 85 ~l~~L~L~~~~l~~---------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l 155 (424)
.++.++|+.+.+.+ ..+..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 34555555554433 34677889999999999999998 67777889999999999999999 889999999
Q ss_pred CcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcCEEEccCCcCCCCCCCccc---cCCcEEEc
Q 036985 156 SSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLYFLDASDNAISGKLPAILP---TSLVQISM 232 (424)
Q Consensus 156 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~~L~~L~l 232 (424)
++|++|+|++|.++ .+|..|.++++|++|+|++|.++..+..+..+++|++|+|++|.+++.++..+. .....+++
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l 348 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYL 348 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhh
Confidence 99999999999999 779999999999999999999986555599999999999999999988777665 22335788
Q ss_pred ccCcCCCCChhhhcCCCCCcEEEeeCC--------cCCCCcCccccCCCCCCEEeccCCcCC
Q 036985 233 RNNNLQGTVPESLKLLSYLQVVDLSHN--------KLSGSVPSFVFSHPSLQQLTLSFNQFT 286 (424)
Q Consensus 233 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n--------~l~~~~~~~l~~~~~L~~L~L~~n~l~ 286 (424)
++|.+++.+|.. |+.|+++.| .+.+..+..+..+..+....++.|.+.
T Consensus 349 ~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 349 RDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred ccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 999998877654 455666666 333333444455566666777777764
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=3e-17 Score=154.34 Aligned_cols=282 Identities=15% Similarity=0.109 Sum_probs=180.2
Q ss_pred CCceeEEEeCCCCCccccCCCcCC-CCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccC-------
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWN-LPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGS------- 154 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~------- 154 (424)
+.+++.|.++++ +.......+.. +++|++|||++|++.. ....-+.++.++.+.+..+.+. +.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEE-ecCccccccccccccccccccC---HHHhccccccccc
Confidence 456788888753 21111112333 7888888888888761 1111122233455555555332 345666
Q ss_pred -CCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcC----CCCCCCccc--cC
Q 036985 155 -LSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAI----SGKLPAILP--TS 226 (424)
Q Consensus 155 -l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l----~~~~~~~~~--~~ 226 (424)
+++|+++++.+ .++...+.+|.++++|+.+++++|.+....+. |..+.++..+....+.. .......+. ..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88888888888 77766667888888888888888888755555 77777776666654221 111111221 33
Q ss_pred Cc-EEEcccCcCCCCChhhh----cCCCCCcEEEeeCCcCCCCcCccc-cCCCCCCEEeccCCcCCCCCCCCCCCCCccc
Q 036985 227 LV-QISMRNNNLQGTVPESL----KLLSYLQVVDLSHNKLSGSVPSFV-FSHPSLQQLTLSFNQFTSIQQPAPTNDNNIF 300 (424)
Q Consensus 227 L~-~L~l~~n~l~~~~~~~l----~~l~~L~~L~Ls~n~l~~~~~~~l-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 300 (424)
++ .+.+.... .++..+ ....+++.+.+.++-.. .....+ ..+++|+.+++++|+++.++...+ ..
T Consensus 178 L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF-----~~ 248 (329)
T 3sb4_A 178 LETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTF-----AQ 248 (329)
T ss_dssp CEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTT-----TT
T ss_pred cceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhh-----hC
Confidence 43 33332211 122211 12455667777665222 111112 236889999999988888766655 57
Q ss_pred CCCCcEEEccCCCCCCCChhhhcCCCCCC-EEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhh
Q 036985 301 SSQLIAVDISNNELQGMLPLFMALMPKLS-ALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLL 379 (424)
Q Consensus 301 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~ 379 (424)
+.+|+++++.+| ++.+.+.+|.++++|+ .+++.+ .++...+..|.++.+ |+.+++++|.++...+..|.
T Consensus 249 ~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~--------L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 249 KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN--------LRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT--------EEEEEECSSCCCEECTTTTC
T ss_pred CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc--------CCEEEeCCCccCccchhhhc
Confidence 888999999887 7767777899999999 999988 777666778877666 99999999999877777888
Q ss_pred hhccCCcEEEc
Q 036985 380 ELQPGSANVRL 390 (424)
Q Consensus 380 ~l~~~L~~L~l 390 (424)
++ ++|+.++.
T Consensus 319 ~~-~~L~~ly~ 328 (329)
T 3sb4_A 319 NG-VPSKLIYK 328 (329)
T ss_dssp TT-CCCCEEEC
T ss_pred CC-cchhhhcc
Confidence 88 48988864
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=6.8e-17 Score=133.61 Aligned_cols=128 Identities=27% Similarity=0.309 Sum_probs=112.1
Q ss_pred CCceeEEEeCCCCCc-cccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 83 LSRVTELNLDQAGYS-GSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
.++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 478999999999998 77888889999999999999999865 678999999999999999997788888889999999
Q ss_pred ecccCcCCCC-chhhcCCCCCCcEEEeecccccccCC---C-CCCCCCcCEEEccC
Q 036985 162 YLDYNNLEGT-IPASFNGLSSLKRLEIQSNKLTGEFP---E-LGSLKNLYFLDASD 212 (424)
Q Consensus 162 ~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~-l~~l~~L~~L~l~~ 212 (424)
++++|.+++. .+..+..+++|++|++++|.+++..+ . +..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999863 34788999999999999999998776 2 78889999998763
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=3.1e-16 Score=129.58 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=97.5
Q ss_pred CCCCcEEEeeCCcCC-CCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCC
Q 036985 248 LSYLQVVDLSHNKLS-GSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMP 326 (424)
Q Consensus 248 l~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~ 326 (424)
.+++++|++++|.++ +.+|..+..+++|++|++++|.++++ ..+ ..+++|++|++++|.+++.+|..+..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~----~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANL----PKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTC----CCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhh----hcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 467888888888887 66777778888888888888888775 222 5678888888888888877777777788
Q ss_pred CCCEEeccCCcCccc-CchhHHhhcCCCCCCCCCccEEEccCCcCccccC---hhhhhhccCCcEEEccC
Q 036985 327 KLSALSLENNKFTGM-IPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIP---RSLLELQPGSANVRLAD 392 (424)
Q Consensus 327 ~L~~L~L~~N~l~~~-~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p---~~~~~l~~~L~~L~l~~ 392 (424)
+|++|++++|.+++. .+..+..+++ |++|++++|.+++..+ ..+..+ |+|++|++++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~--------L~~L~l~~N~l~~~~~~~~~~~~~l-~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLEN--------LKSLDLFNCEVTNLNDYRENVFKLL-PQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTT--------CCEEECTTCGGGGSTTHHHHHHHHC-TTCCEETTBC
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCC--------CCEEeCcCCcccchHHHHHHHHHHC-CCcccccCCC
Confidence 888888888888763 3356666555 8888888888876555 467777 5888887763
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=7.9e-16 Score=132.95 Aligned_cols=127 Identities=28% Similarity=0.357 Sum_probs=110.7
Q ss_pred eEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccC
Q 036985 87 TELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYN 166 (424)
Q Consensus 87 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 166 (424)
+.++++++.++. +|..+ .+.|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 578888888874 45444 368999999999998 67789999999999999999999887888999999999999999
Q ss_pred cCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCC
Q 036985 167 NLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISG 217 (424)
Q Consensus 167 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~ 217 (424)
.+++..+..|..+++|++|++++|.++...+. +..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99988888899999999999999999977776 8889999999999988763
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=2.2e-16 Score=148.43 Aligned_cols=257 Identities=12% Similarity=0.077 Sum_probs=176.3
Q ss_pred CCceeEEEeCCCCCc--cccCCCcCCCCCCcEEEccCCCCCCCcchhcCC--------CcCCceEEcccCcccccCCccc
Q 036985 83 LSRVTELNLDQAGYS--GSLSTTSWNLPYLETLDLSNNFFSGSIPESLSN--------LTRLIRLGLSRNSFSGEIPASI 152 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--------l~~L~~L~L~~n~i~~~~p~~~ 152 (424)
+++|+.|||++|.+. ...... ++.++.+.+..+.|. ..+|.+ +++|+.|++.+ .++..-+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcccc---ccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 578999999999987 322222 233555666666433 346677 99999999998 7886777789
Q ss_pred cCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccc----cccCC-CCCCCCCcC-EEEccCCcCCCCCCCc----
Q 036985 153 GSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKL----TGEFP-ELGSLKNLY-FLDASDNAISGKLPAI---- 222 (424)
Q Consensus 153 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~-~l~~l~~L~-~L~l~~n~l~~~~~~~---- 222 (424)
.++++|+++++.+|.+....+.+|..+.++..+....+.. ..... .+..+..|+ .+.+.... ..+..
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~ 197 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKA 197 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHT
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhc
Confidence 9999999999999998877778888887777776655322 11111 144455555 34443221 11110
Q ss_pred --cccCCcEEEcccCcCCCCChhhh-cCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcc
Q 036985 223 --LPTSLVQISMRNNNLQGTVPESL-KLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNI 299 (424)
Q Consensus 223 --~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 299 (424)
...++..+.+.++-.. .....+ ..+++|+.+++++|+++...+..|.++++|+.+++.+| ++.++..+| .
T Consensus 198 ~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF-----~ 270 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF-----S 270 (329)
T ss_dssp TCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT-----T
T ss_pred ccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHh-----h
Confidence 1145666666554222 111122 24788999999998888666667888889999999887 777665555 5
Q ss_pred cCCCCc-EEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEc
Q 036985 300 FSSQLI-AVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLL 365 (424)
Q Consensus 300 ~~~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~L 365 (424)
.+.+|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++...+..|.++.+ |+.+..
T Consensus 271 ~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~--------L~~ly~ 328 (329)
T 3sb4_A 271 NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP--------SKLIYK 328 (329)
T ss_dssp TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC--------CCEEEC
T ss_pred CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc--------hhhhcc
Confidence 778898 999988 777677788999999999999888888777778877666 887753
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=2.5e-15 Score=127.93 Aligned_cols=130 Identities=24% Similarity=0.289 Sum_probs=102.9
Q ss_pred eEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccC
Q 036985 87 TELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYN 166 (424)
Q Consensus 87 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 166 (424)
+.+++++++++. +|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 456666666664 34322 368899999999998666667888999999999999998666666888999999999999
Q ss_pred cCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCC
Q 036985 167 NLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKL 219 (424)
Q Consensus 167 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~ 219 (424)
.+++..+..+..+++|++|++++|.+++..+. +..+++|++|++++|.+.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 99877777788889999999999998876666 677888888888888877543
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=2.4e-15 Score=128.09 Aligned_cols=133 Identities=20% Similarity=0.172 Sum_probs=106.7
Q ss_pred CCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCC
Q 036985 250 YLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLS 329 (424)
Q Consensus 250 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 329 (424)
..+.++++++.++ .+|..+ .++|++|++++|++++++...+ ..+++|++|++++|.+++..+..+..+++|+
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVF-----DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTT-----TTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHh-----cCcccccEEECCCCcceEeChhHccCCCccC
Confidence 3578999999988 455443 3789999999999987544332 5678999999999999987777789999999
Q ss_pred EEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCC
Q 036985 330 ALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCP 399 (424)
Q Consensus 330 ~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip 399 (424)
+|++++|.+++..+..+..+.+ |++|++++|++++..+..+..+ ++|++|++++|+++.-+
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~--------L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQ--------LKELALDTNQLKSVPDGIFDRL-TSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTT--------CCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSSCBCCCH
T ss_pred EEECCCCCccccCHHHhhCCcc--------cCEEECcCCcceEeCHHHhcCC-cccCEEEecCCCeeccC
Confidence 9999999999776666666666 9999999999986555556777 59999999999987543
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=7.6e-15 Score=126.76 Aligned_cols=129 Identities=20% Similarity=0.255 Sum_probs=91.7
Q ss_pred CEEEccCCcCCCCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcC
Q 036985 206 YFLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQF 285 (424)
Q Consensus 206 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l 285 (424)
+.+++++|.++ .+|..+..++++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCS-SCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCC-cCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 45667777666 344445567777777777776 4556777788888888888888766666777778888888888887
Q ss_pred CCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCccc
Q 036985 286 TSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGM 341 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 341 (424)
+.++...+ ..+++|++|+|++|.++...+..|..+++|+.|++++|.+...
T Consensus 91 ~~i~~~~f-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 91 RCIPPRTF-----DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CBCCTTTT-----TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CEeCHHHh-----CCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 77544333 4567777888888877766666677777777888877777643
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=2.8e-14 Score=137.26 Aligned_cols=264 Identities=13% Similarity=0.122 Sum_probs=148.0
Q ss_pred CCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEE
Q 036985 107 LPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLE 186 (424)
Q Consensus 107 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 186 (424)
+..++.+.+.++ ++.+...+|.++ +|+.+.+..+ ++..-..+|.+. +|+.+.+.. .+....+.+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 345555555443 332333455553 4666665544 443444445552 466666654 44434445566666666666
Q ss_pred eecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCC
Q 036985 187 IQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSG 263 (424)
Q Consensus 187 l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 263 (424)
+.+|.++..... |. ..+|+.+.+..+ ++......|. .+|+.+++..+ ++.....+|.. .+|+.+.+. +.++.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence 666655544443 33 456666666533 4333333443 45666666543 33344445555 567777773 33443
Q ss_pred CcCccccCCCCCCEEeccCCcCC-----CCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcC
Q 036985 264 SVPSFVFSHPSLQQLTLSFNQFT-----SIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKF 338 (424)
Q Consensus 264 ~~~~~l~~~~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l 338 (424)
.....|.++++|+.+++.+|.+. .++...+ ..+++|+.+++.+ .++.+...+|.++++|+.++|..| +
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF-----~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL-----EGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT-----TTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHh-----hCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c
Confidence 44556667777777777666554 2222222 5667777777773 466555667777777777777544 5
Q ss_pred cccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCC
Q 036985 339 TGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLY 396 (424)
Q Consensus 339 ~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~ 396 (424)
+......|..+ + |+.+++++|.+....+..|..+..+++.|++..+.+.
T Consensus 335 ~~I~~~aF~~~-~--------L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 335 TQINFSAFNNT-G--------IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEECTTSSSSS-C--------CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cEEcHHhCCCC-C--------CCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 54455556555 5 7777777777665555556665336777777776554
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=5.5e-14 Score=135.18 Aligned_cols=259 Identities=12% Similarity=0.091 Sum_probs=129.7
Q ss_pred cCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEc
Q 036985 132 TRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDA 210 (424)
Q Consensus 132 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l 210 (424)
..++.+.+.++ ++..-..+|.+. +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+...... |.++++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44555555432 333334455553 5666666544 443444455553 466666654 33333333 556666666666
Q ss_pred cCCcCCCCCCCccc-cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCC
Q 036985 211 SDNAISGKLPAILP-TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQ 289 (424)
Q Consensus 211 ~~n~l~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 289 (424)
.+|.++......|. .+|+.+.+..+ ++.....+|..+++|+.+++..+ ++......|.+ .+|+.+.+ .+.++.++
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~ 263 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIA 263 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEEC
T ss_pred CCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEC
Confidence 66655544444444 55666666533 44444455666666666666553 33233333433 55666666 33344443
Q ss_pred CCCCCCCCcccCCCCcEEEccCCCCC-----CCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEE
Q 036985 290 QPAPTNDNNIFSSQLIAVDISNNELQ-----GMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLL 364 (424)
Q Consensus 290 ~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~ 364 (424)
...+ ..+++|+.+++.+|.+. .+.+..|.++++|+.+++.+ .++......|.++.+ |+.++
T Consensus 264 ~~aF-----~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~--------L~~l~ 329 (401)
T 4fdw_A 264 SRAF-----YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRK--------VTQLT 329 (401)
T ss_dssp TTTT-----TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCS--------CCEEE
T ss_pred hhHh-----hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCC--------ccEEE
Confidence 3333 35556666666555443 23344556666666666652 344444444544444 66666
Q ss_pred ccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCcccccc-CCCccccccc
Q 036985 365 LGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQ-GARQKSLVEC 416 (424)
Q Consensus 365 Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~-~~l~~l~l~~ 416 (424)
|..| ++..-+..|.++ +|+.+++.+|.+..++...|... ..++.+++..
T Consensus 330 lp~~-l~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 330 IPAN-VTQINFSAFNNT--GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ECTT-CCEECTTSSSSS--CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred ECcc-ccEEcHHhCCCC--CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 6443 433333444444 56666666666655555444432 2344444433
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=9.4e-15 Score=124.24 Aligned_cols=135 Identities=14% Similarity=0.111 Sum_probs=101.8
Q ss_pred hhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhc
Q 036985 244 SLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMA 323 (424)
Q Consensus 244 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 323 (424)
.+..+++|++|++++|.++. ++......++|++|++++|.++++ . .+ ..+++|++|++++|.+++..+..+.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~-~l----~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--D-GF----PLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--C-CC----CCCSSCCEEECCSSCCCEECSCHHH
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--c-cc----ccCCCCCEEECCCCcccccCcchhh
Confidence 45667889999999998884 454333344899999999988875 2 22 5678899999999988866556668
Q ss_pred CCCCCCEEeccCCcCcccCch--hHHhhcCCCCCCCCCccEEEccCCcCccccChh----hhhhccCCcEEEccCCCCCC
Q 036985 324 LMPKLSALSLENNKFTGMIPT--EYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRS----LLELQPGSANVRLADNCLYR 397 (424)
Q Consensus 324 ~l~~L~~L~L~~N~l~~~~~~--~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~----~~~l~~~L~~L~l~~N~l~~ 397 (424)
.+++|++|++++|.++ .+|. .+..+++ |++|++++|.++ .+|.. +..+ |+|++|++++|.+++
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~--------L~~L~l~~N~i~-~~~~~~~~~~~~l-~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGDLDPLASLKS--------LTYLCILRNPVT-NKKHYRLYVIYKV-PQVRVLDFQKVKLKE 154 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGGGGGGGGCTT--------CCEEECCSSGGG-GSTTHHHHHHHHC-TTCSEETTEECCHHH
T ss_pred cCCCCCEEECCCCcCC-cchhhHhhhcCCC--------CCEEEecCCCCC-CcHhHHHHHHHHC-CccceeCCCcCCHHH
Confidence 8889999999999885 4554 5665555 889999999887 45654 7777 689999888887653
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=6.2e-15 Score=125.37 Aligned_cols=129 Identities=22% Similarity=0.175 Sum_probs=94.8
Q ss_pred CCceeEEEeCCCCCccccCCCcCCC-CCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 83 LSRVTELNLDQAGYSGSLSTTSWNL-PYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
..+++.|++++|.++.. +. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 46788888888888743 43 4444 4888888888888753 568888888888888888885544445788888888
Q ss_pred ecccCcCCCCchh--hcCCCCCCcEEEeecccccccCCC----CCCCCCcCEEEccCCcCC
Q 036985 162 YLDYNNLEGTIPA--SFNGLSSLKRLEIQSNKLTGEFPE----LGSLKNLYFLDASDNAIS 216 (424)
Q Consensus 162 ~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~----l~~l~~L~~L~l~~n~l~ 216 (424)
++++|.+. .+|. .+..+++|++|++++|.++..... +..+++|+.|++++|...
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888886 4554 677888888888888888755442 667777777777776543
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=4e-13 Score=129.32 Aligned_cols=302 Identities=13% Similarity=0.045 Sum_probs=179.2
Q ss_pred CCCCCceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCC----------
Q 036985 80 VSALSRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIP---------- 149 (424)
Q Consensus 80 ~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p---------- 149 (424)
+.++.+|+++.+.. .++..-..+|.++++|+.+++.++ ++..-..+|.++++|+.+.+..+ +.....
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 45678899999864 466556677889999999999765 55344567888888887766543 211222
Q ss_pred ------------ccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCC
Q 036985 150 ------------ASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAIS 216 (424)
Q Consensus 150 ------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~ 216 (424)
.+|.++++|+.+.+.++. .......|.++.+|+.+.+..+ ++..... +.++..|+.+.+..+...
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred cccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE
Confidence 334555556665554432 2233345555556666555544 2222222 555555555555443321
Q ss_pred CCCCCccc-cCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCC
Q 036985 217 GKLPAILP-TSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTN 295 (424)
Q Consensus 217 ~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 295 (424)
.....+. ..++.+.+... ++......+..+..++.+.+..+... .....+..+..++.+....+.+.+ ..+
T Consensus 222 -i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~---~~F-- 293 (394)
T 4fs7_A 222 -LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE---KTF-- 293 (394)
T ss_dssp -ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT---TTT--
T ss_pred -eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc---ccc--
Confidence 1111111 55666666433 22233445667777777777766443 445566677777777766554322 122
Q ss_pred CCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccC
Q 036985 296 DNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIP 375 (424)
Q Consensus 296 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p 375 (424)
..+.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++......|.++.+ |+.+++..+ ++..-.
T Consensus 294 ---~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~--------L~~i~lp~~-l~~I~~ 359 (394)
T 4fs7_A 294 ---YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS--------LSNINFPLS-LRKIGA 359 (394)
T ss_dssp ---TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT--------CCEECCCTT-CCEECT
T ss_pred ---cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC--------CCEEEECcc-ccEehH
Confidence 45678888888654 55455667888888888888644 55555566666555 888888776 554555
Q ss_pred hhhhhhccCCcEEEccCCCCCCCCCccccccCCCcc
Q 036985 376 RSLLELQPGSANVRLADNCLYRCPFSFFFCQGARQK 411 (424)
Q Consensus 376 ~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~ 411 (424)
..|.++. +|+.+++..+ ++.+...+..|.+ |+.
T Consensus 360 ~aF~~C~-~L~~i~lp~~-~~~~~~~F~~c~~-L~~ 392 (394)
T 4fs7_A 360 NAFQGCI-NLKKVELPKR-LEQYRYDFEDTTK-FKW 392 (394)
T ss_dssp TTBTTCT-TCCEEEEEGG-GGGGGGGBCTTCE-EEE
T ss_pred HHhhCCC-CCCEEEECCC-CEEhhheecCCCC-CcE
Confidence 6677774 8888888654 5555555555544 443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=6.2e-14 Score=118.42 Aligned_cols=108 Identities=22% Similarity=0.257 Sum_probs=83.7
Q ss_pred eeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEeccc
Q 036985 86 VTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDY 165 (424)
Q Consensus 86 l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~ 165 (424)
.+.++++++.++. +|..+ .+.|++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3678888888875 45444 37788888888888877777888888888888888888866666678888888888888
Q ss_pred CcCCCCchhhcCCCCCCcEEEeecccccccC
Q 036985 166 NNLEGTIPASFNGLSSLKRLEIQSNKLTGEF 196 (424)
Q Consensus 166 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 196 (424)
|++++..+..|..+++|++|++++|++....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8888666666778888888888888776443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.9e-16 Score=137.51 Aligned_cols=135 Identities=22% Similarity=0.246 Sum_probs=97.4
Q ss_pred hhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhh
Q 036985 242 PESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLF 321 (424)
Q Consensus 242 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 321 (424)
|..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+++++. .. ..+++|++|++++|.+++ +| .
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~--~~----~~~~~L~~L~L~~N~l~~-l~-~ 110 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIEN--LD----AVADTLEELWISYNQIAS-LS-G 110 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSS--HH----HHHHHCSEEEEEEEECCC-HH-H
T ss_pred hHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccc--hh----hcCCcCCEEECcCCcCCc-CC-c
Confidence 3478888888888888888885 55 67778888888888888876432 22 445788888888888885 34 5
Q ss_pred hcCCCCCCEEeccCCcCcccCc-hhHHhhcCCCCCCCCCccEEEccCCcCccccChh----------hhhhccCCcEEEc
Q 036985 322 MALMPKLSALSLENNKFTGMIP-TEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRS----------LLELQPGSANVRL 390 (424)
Q Consensus 322 l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~----------~~~l~~~L~~L~l 390 (424)
+..+++|+.|++++|++++..+ ..+..+.+ |++|++++|.+++..|.. +..+ |+|++|+
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~--------L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l-~~L~~Ld- 180 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDK--------LEDLLLAGNPLYNDYKENNATSEYRIEVVKRL-PNLKKLD- 180 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTT--------CSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC-SSCSEEC-
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCC--------CCEEEecCCccccccccccchHHHHHHHHHhC-CCcEEEC-
Confidence 7778888888888888875322 34555555 888888888887665542 5666 5888775
Q ss_pred cCCCCCC
Q 036985 391 ADNCLYR 397 (424)
Q Consensus 391 ~~N~l~~ 397 (424)
+|.++.
T Consensus 181 -~~~i~~ 186 (198)
T 1ds9_A 181 -GMPVDV 186 (198)
T ss_dssp -CGGGTT
T ss_pred -CcccCH
Confidence 666653
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=2.2e-13 Score=115.49 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=82.6
Q ss_pred eEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccC
Q 036985 87 TELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYN 166 (424)
Q Consensus 87 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 166 (424)
+.++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888886 4555443 78888888888888777888888888888888888888655555778888888888888
Q ss_pred cCCCCchhhcCCCCCCcEEEeeccccccc
Q 036985 167 NLEGTIPASFNGLSSLKRLEIQSNKLTGE 195 (424)
Q Consensus 167 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 195 (424)
++.+..+..|..+++|++|++++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 88865555677788888888888877644
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=1.8e-16 Score=137.67 Aligned_cols=133 Identities=25% Similarity=0.250 Sum_probs=65.4
Q ss_pred hcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecccccccCCCCCCCCCcC
Q 036985 127 SLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPELGSLKNLY 206 (424)
Q Consensus 127 ~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~ 206 (424)
.+..+++|++|++++|.+++ +| .+.++++|++|++++|.+. .+|..+..+++|++|++++|.+++. +.+..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~~~~~l---- 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKL---- 114 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-HHHHHH----
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-CccccC----
Confidence 44555555555555555543 33 4444555555555555544 3333333444444444444444431 122222
Q ss_pred EEEccCCcCCCCCCCccccCCcEEEcccCcCCCCCh-hhhcCCCCCcEEEeeCCcCCCCcCc----------cccCCCCC
Q 036985 207 FLDASDNAISGKLPAILPTSLVQISMRNNNLQGTVP-ESLKLLSYLQVVDLSHNKLSGSVPS----------FVFSHPSL 275 (424)
Q Consensus 207 ~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~----------~l~~~~~L 275 (424)
++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..|. .+..+++|
T Consensus 115 ------------------~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 115 ------------------VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp ------------------HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred ------------------CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence 344444444444443221 3566677777777777776644333 25556666
Q ss_pred CEEeccCCcCCC
Q 036985 276 QQLTLSFNQFTS 287 (424)
Q Consensus 276 ~~L~L~~n~l~~ 287 (424)
++|+ ++.++.
T Consensus 177 ~~Ld--~~~i~~ 186 (198)
T 1ds9_A 177 KKLD--GMPVDV 186 (198)
T ss_dssp SEEC--CGGGTT
T ss_pred EEEC--CcccCH
Confidence 6665 444443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=3.3e-13 Score=113.95 Aligned_cols=106 Identities=25% Similarity=0.280 Sum_probs=90.9
Q ss_pred CcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeec
Q 036985 110 LETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQS 189 (424)
Q Consensus 110 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 189 (424)
.+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 578999999998 5666553 7899999999999988788899999999999999999977777788999999999999
Q ss_pred ccccccCCC-CCCCCCcCEEEccCCcCCCC
Q 036985 190 NKLTGEFPE-LGSLKNLYFLDASDNAISGK 218 (424)
Q Consensus 190 n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~ 218 (424)
|++++..+. +..+++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999987776 88889999999999887643
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=6.1e-13 Score=112.70 Aligned_cols=105 Identities=24% Similarity=0.352 Sum_probs=91.1
Q ss_pred cEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeecc
Q 036985 111 ETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQSN 190 (424)
Q Consensus 111 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 190 (424)
+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 68999999997 6776664 78999999999999888888999999999999999999766667789999999999999
Q ss_pred cccccCCC-CCCCCCcCEEEccCCcCCCC
Q 036985 191 KLTGEFPE-LGSLKNLYFLDASDNAISGK 218 (424)
Q Consensus 191 ~l~~~~~~-l~~l~~L~~L~l~~n~l~~~ 218 (424)
.+++..+. +..+++|++|++++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99987776 88899999999999987643
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.36 E-value=1.7e-11 Score=117.95 Aligned_cols=292 Identities=10% Similarity=0.002 Sum_probs=172.4
Q ss_pred ccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhh-
Q 036985 97 SGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPAS- 175 (424)
Q Consensus 97 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~- 175 (424)
+.+-..+|.++.+|+.+.+..+ ++.+-..+|.++++|+.+++..+ ++..-..+|.++.+|+.+.+..+ +......+
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 3344567889999999999754 66455678999999999999765 55455667888999988877543 22222233
Q ss_pred ---------------------cCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEE
Q 036985 176 ---------------------FNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQIS 231 (424)
Q Consensus 176 ---------------------l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~ 231 (424)
|.++++|+.+.+.++... .... |.++.+|+.+.+..+ ++......+. ..|+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 444444444444433211 1111 444444444444433 2111111221 3333333
Q ss_pred cccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccC
Q 036985 232 MRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISN 311 (424)
Q Consensus 232 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~ 311 (424)
+..+... +........+|+.+.+... ++......+..+..++.+.+..+.. .+....+ ..+..++.+....
T Consensus 215 ~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F-----~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 215 FPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLF-----YNCSGLKKVIYGS 285 (394)
T ss_dssp CCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTT-----TTCTTCCEEEECS
T ss_pred cCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeecccc-----ccccccceeccCc
Confidence 3332211 1112223345555555433 2212334455666667666665432 2222222 4556677766665
Q ss_pred CCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEcc
Q 036985 312 NELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLA 391 (424)
Q Consensus 312 n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~ 391 (424)
+.+. ...+..+.+|+.+.+..+ ++......|..+.+ |+.+++.++ ++..-...|.++. +|+.+++.
T Consensus 286 ~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~--------L~~i~lp~~-v~~I~~~aF~~c~-~L~~i~lp 351 (394)
T 4fs7_A 286 VIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS--------LVSIDLPYL-VEEIGKRSFRGCT-SLSNINFP 351 (394)
T ss_dssp SEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT--------CCEECCCTT-CCEECTTTTTTCT-TCCEECCC
T ss_pred eeec---cccccccccccccccccc-cceechhhhcCCCC--------CCEEEeCCc-ccEEhHHhccCCC-CCCEEEEC
Confidence 5432 345778888999888765 55455566666655 999999765 6555567788885 99999998
Q ss_pred CCCCCCCCCccccccCCCcccccccC
Q 036985 392 DNCLYRCPFSFFFCQGARQKSLVECN 417 (424)
Q Consensus 392 ~N~l~~ip~~~~~~~~~l~~l~l~~n 417 (424)
.| ++.|+...|....+|+.+.+..+
T Consensus 352 ~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 352 LS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cc-ccEehHHHhhCCCCCCEEEECCC
Confidence 77 99998888877666998887543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=1.9e-14 Score=137.03 Aligned_cols=174 Identities=14% Similarity=0.082 Sum_probs=93.9
Q ss_pred CCcCEEEccCCcCCCCCCCccc-------cCCcEEEcccCcCCCCChhhh-cCCCCCcEEEeeCCcCCCCcCccc-----
Q 036985 203 KNLYFLDASDNAISGKLPAILP-------TSLVQISMRNNNLQGTVPESL-KLLSYLQVVDLSHNKLSGSVPSFV----- 269 (424)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~l----- 269 (424)
+.|+.|++++|.++......+. .+|++|++++|.++......+ ..+++|++|+|++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4677888888877643222211 467777777777654322222 234567777777777764333332
Q ss_pred cCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCC----ChhhhcCCCCCCEEeccCCcCcccCchh
Q 036985 270 FSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGM----LPLFMALMPKLSALSLENNKFTGMIPTE 345 (424)
Q Consensus 270 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 345 (424)
...++|++|++++|.+++...... .......++|++|+|++|.+++. ++..+...++|+.|+|++|.+++.....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l-~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVL-MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHH-HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHH-HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 234667777777777654211100 00002345677777777776542 2344555667777777777776543333
Q ss_pred HHhhcCCCCCCCCCccEEEccCCcCccccChhhhhh
Q 036985 346 YAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLEL 381 (424)
Q Consensus 346 ~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l 381 (424)
+..... .+++|++|+|++|.|++.....+..+
T Consensus 231 l~~~L~----~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 231 LARAAR----EHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHH----HCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHHHH----hCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 322110 12237777777777765555445443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=5.9e-14 Score=133.70 Aligned_cols=169 Identities=18% Similarity=0.042 Sum_probs=118.7
Q ss_pred cCCcEEEcccCcCCCCChhhhcC-----CCCCcEEEeeCCcCCCCcCccc-cCCCCCCEEeccCCcCCCCCCCCCCCCCc
Q 036985 225 TSLVQISMRNNNLQGTVPESLKL-----LSYLQVVDLSHNKLSGSVPSFV-FSHPSLQQLTLSFNQFTSIQQPAPTNDNN 298 (424)
Q Consensus 225 ~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~~~~~~l-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 298 (424)
+.++.|++++|.++......+.. .++|++|+|++|.+++.....+ ..+++|++|++++|.+++...........
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 78999999999998654444432 3799999999999975433333 23578999999999997632211100000
Q ss_pred ccCCCCcEEEccCCCCCCC----ChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCcccc
Q 036985 299 IFSSQLIAVDISNNELQGM----LPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAI 374 (424)
Q Consensus 299 ~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~ 374 (424)
...++|++|+|++|.+++. ++..+..+++|++|+|++|.+++.....+..... .+++|++|+|++|.|++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~----~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD----RNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG----GCSCCCEEECCSSCCCHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh----cCCCcCeEECCCCCCCHHH
Confidence 1347899999999999753 3445578899999999999998654333332211 2334999999999997643
Q ss_pred ----ChhhhhhccCCcEEEccCCCCCCC
Q 036985 375 ----PRSLLELQPGSANVRLADNCLYRC 398 (424)
Q Consensus 375 ----p~~~~~l~~~L~~L~l~~N~l~~i 398 (424)
+..+... ++|++|++++|.|+..
T Consensus 228 ~~~l~~~L~~~-~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 228 ALALARAAREH-PSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHHC-SSCCEEECTTSSCCHH
T ss_pred HHHHHHHHHhC-CCCCEEeccCCCCCHH
Confidence 3344455 5999999999999743
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.1e-11 Score=116.95 Aligned_cols=103 Identities=22% Similarity=0.239 Sum_probs=86.2
Q ss_pred EEeCCC-CCccccCCCcCCCCCCcEEEccC-CCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccC
Q 036985 89 LNLDQA-GYSGSLSTTSWNLPYLETLDLSN-NFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYN 166 (424)
Q Consensus 89 L~L~~~-~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 166 (424)
++++++ .++. +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455566 6764 666 88999999999996 9998777788999999999999999999888888999999999999999
Q ss_pred cCCCCchhhcCCCCCCcEEEeecccccc
Q 036985 167 NLEGTIPASFNGLSSLKRLEIQSNKLTG 194 (424)
Q Consensus 167 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 194 (424)
++++..+..|..++ |++|++.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99866666666655 9999999998863
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.24 E-value=1.2e-09 Score=104.86 Aligned_cols=292 Identities=12% Similarity=0.077 Sum_probs=139.4
Q ss_pred CCcCCCC-CCcEEEccCCCCCCCcchhcCCCcCCceEEcccCc---ccccCCccccCCCcCceEecccCcCCCCchhhcC
Q 036985 102 TTSWNLP-YLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNS---FSGEIPASIGSLSSLEELYLDYNNLEGTIPASFN 177 (424)
Q Consensus 102 ~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 177 (424)
.+|.+++ .|+.+.+..+ ++.+-..+|.++++|+.+.+..+. ++..-..+|.++.+|+.+.+..+ ++......|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 3444443 3556655443 433334456666666666655442 33233345555555655555433 2323334555
Q ss_pred CCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc-cCCcEEEcccCcCCCCChhhhcCCCCCcEEE
Q 036985 178 GLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP-TSLVQISMRNNNLQGTVPESLKLLSYLQVVD 255 (424)
Q Consensus 178 ~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 255 (424)
.+.+|+.+.+..+... .... +..+..|+.+.+..+ ++......|. ..|+.+.+..+-.. ....++..+.+++...
T Consensus 135 ~c~~L~~i~lp~~~~~-I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 135 HCEELDTVTIPEGVTS-VADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR-IGTNAFSECFALSTIT 211 (394)
T ss_dssp TCTTCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE-ECTTTTTTCTTCCEEE
T ss_pred hhcccccccccceeee-ecccceecccccccccccce-eeEeccccccccceeEEEECCcccc-cccchhhhccccceec
Confidence 5566666665433221 2122 555555555555443 2222222222 44555554432211 2223344444444443
Q ss_pred eeCCcC------------------------------------CCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcc
Q 036985 256 LSHNKL------------------------------------SGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNI 299 (424)
Q Consensus 256 Ls~n~l------------------------------------~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 299 (424)
...+.. +......|..+..|+.+.+..+. ..+....+ .
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF-----~ 285 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAF-----M 285 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTT-----T
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCccc-----c
Confidence 332211 11122345556667777665432 22233222 4
Q ss_pred cCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhh
Q 036985 300 FSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLL 379 (424)
Q Consensus 300 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~ 379 (424)
.+..|+.+.+. +.++.+...+|.++.+|+.+++..+ ++......|.++.+ |+.+.+..+ ++..-...|.
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~--------L~~i~ip~s-v~~I~~~aF~ 354 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ--------LERIAIPSS-VTKIPESAFS 354 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT--------CCEEEECTT-CCBCCGGGGT
T ss_pred cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC--------CCEEEECcc-cCEEhHhHhh
Confidence 56677777775 3455455566777777777777654 44444555665555 777777554 4433445666
Q ss_pred hhccCCcEEEccCCCCCCCCCccccccCCCcccccccCcc
Q 036985 380 ELQPGSANVRLADNCLYRCPFSFFFCQGARQKSLVECNRF 419 (424)
Q Consensus 380 ~l~~~L~~L~l~~N~l~~ip~~~~~~~~~l~~l~l~~n~l 419 (424)
++. +|+.+++.++.... ..++.|.. |+.+.+..|.+
T Consensus 355 ~C~-~L~~i~~~~~~~~~--~~~~~~~~-L~~i~i~~~~~ 390 (394)
T 4gt6_A 355 NCT-ALNNIEYSGSRSQW--NAISTDSG-LQNLPVAPGSI 390 (394)
T ss_dssp TCT-TCCEEEESSCHHHH--HTCBCCCC-C----------
T ss_pred CCC-CCCEEEECCceeeh--hhhhccCC-CCEEEeCCCCE
Confidence 774 77777777764321 23444444 66666655543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.6e-11 Score=114.44 Aligned_cols=104 Identities=20% Similarity=0.190 Sum_probs=91.5
Q ss_pred EEEccCC-CCCCCcchhcCCCcCCceEEccc-CcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCCCcEEEeec
Q 036985 112 TLDLSNN-FFSGSIPESLSNLTRLIRLGLSR-NSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSSLKRLEIQS 189 (424)
Q Consensus 112 ~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 189 (424)
.++.+++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4688887 888 5787 99999999999996 999987778899999999999999999998888999999999999999
Q ss_pred ccccccCCC-CCCCCCcCEEEccCCcCCCC
Q 036985 190 NKLTGEFPE-LGSLKNLYFLDASDNAISGK 218 (424)
Q Consensus 190 n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~ 218 (424)
|++++.++. +..++ |+.|++.+|.+...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 999987776 55554 99999999988743
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.22 E-value=7.2e-10 Score=106.47 Aligned_cols=283 Identities=12% Similarity=0.128 Sum_probs=177.6
Q ss_pred ceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCC---CCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceE
Q 036985 85 RVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNF---FSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEEL 161 (424)
Q Consensus 85 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 161 (424)
.|+++.+.. .++..-..+|.++++|+.+.+..+. ++..-..+|.++.+|+.+.+..+ ++.....+|..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 478888864 3665666788999999999987763 55344567888888888877654 443555677888888888
Q ss_pred ecccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--c-------------
Q 036985 162 YLDYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--T------------- 225 (424)
Q Consensus 162 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~------------- 225 (424)
.+..+ +.......|..+.+|+.+.+..+ +...... |. ...|+.+.+..+... .....+. .
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccc
Confidence 88654 33344556777777777777654 2212222 32 234555554332110 0000000 1
Q ss_pred ------------------------CCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEecc
Q 036985 226 ------------------------SLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLS 281 (424)
Q Consensus 226 ------------------------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~ 281 (424)
.+..+.+. +.++.....+|..+.+|+.+.+.++... .....+.+++.|+.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC
T ss_pred cccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccccccccccCC
Confidence 12222221 1122233457888999999999776543 555678889999999996
Q ss_pred CCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCcc
Q 036985 282 FNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQ 361 (424)
Q Consensus 282 ~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~ 361 (424)
+.++.++...+ ..+.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++......|.++.+ |+
T Consensus 297 -~~i~~I~~~aF-----~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~--------L~ 360 (394)
T 4gt6_A 297 -SRITELPESVF-----AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA--------LN 360 (394)
T ss_dssp -TTCCEECTTTT-----TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT--------CC
T ss_pred -CcccccCceee-----cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC--------CC
Confidence 45666655554 57899999999865 66566778999999999999755 66556677887766 99
Q ss_pred EEEccCCcCccccChhhhhhccCCcEEEccCCCC
Q 036985 362 RLLLGGNYLFGAIPRSLLELQPGSANVRLADNCL 395 (424)
Q Consensus 362 ~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l 395 (424)
.+++.++.... ..+.... +|+.+.+..|.+
T Consensus 361 ~i~~~~~~~~~---~~~~~~~-~L~~i~i~~~~~ 390 (394)
T 4gt6_A 361 NIEYSGSRSQW---NAISTDS-GLQNLPVAPGSI 390 (394)
T ss_dssp EEEESSCHHHH---HTCBCCC-CC----------
T ss_pred EEEECCceeeh---hhhhccC-CCCEEEeCCCCE
Confidence 99999986531 3455553 788888876644
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.03 E-value=2.7e-08 Score=94.92 Aligned_cols=296 Identities=10% Similarity=0.077 Sum_probs=176.3
Q ss_pred CceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEec
Q 036985 84 SRVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYL 163 (424)
Q Consensus 84 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 163 (424)
.+++.+.+.. .++.+-..+|.++.+|+.+++..+ ++.+-..+|.++ +|+.+.+..+ +...-..+|.. .+|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 5677777753 566555677888999999998754 554445677776 6777777544 44344445655 47888888
Q ss_pred ccCcCCCCchhhcCCCCCCcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCC------------ccc--cCCc
Q 036985 164 DYNNLEGTIPASFNGLSSLKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPA------------ILP--TSLV 228 (424)
Q Consensus 164 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~------------~~~--~~L~ 228 (424)
..+- .......|.+. +++.+.+..+ ++..... +.....++.+.+..+........ .+. ..+.
T Consensus 121 p~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 121 PGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 7653 32333445443 5666666544 2222222 66677777776654432211100 000 2333
Q ss_pred EEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEE
Q 036985 229 QISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVD 308 (424)
Q Consensus 229 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~ 308 (424)
.+.+.... .......+..+.+++.+.+..+ +.......+..+..|+.+.+..+ ++.+....+ ..+..|+.+.
T Consensus 198 ~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF-----~~~~~l~~i~ 269 (379)
T 4h09_A 198 EFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLL-----QNCTALKTLN 269 (379)
T ss_dssp EEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTT-----TTCTTCCEEE
T ss_pred ccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccc-----ceeehhcccc
Confidence 33332221 1123345566677777777654 33244455667778888877654 555444333 4567788887
Q ss_pred ccCCCCCCCChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEE
Q 036985 309 ISNNELQGMLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANV 388 (424)
Q Consensus 309 Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L 388 (424)
+..+ +.......|.++++|+.+.+.++.++......|.++.+ |+.+.|..+ ++..-...|.++. +|+.+
T Consensus 270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~--------L~~i~lp~~-l~~I~~~aF~~C~-~L~~i 338 (379)
T 4h09_A 270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK--------LSSVTLPTA-LKTIQVYAFKNCK-ALSTI 338 (379)
T ss_dssp ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT--------CCEEECCTT-CCEECTTTTTTCT-TCCCC
T ss_pred cccc-ceeccccccccccccccccccccccceehhhhhcCCCC--------CCEEEcCcc-ccEEHHHHhhCCC-CCCEE
Confidence 7644 44445567778888888888877777665666766555 888888654 5444455677774 78888
Q ss_pred EccCCCCCCCCCccccccC
Q 036985 389 RLADNCLYRCPFSFFFCQG 407 (424)
Q Consensus 389 ~l~~N~l~~ip~~~~~~~~ 407 (424)
.+..+ ++.|....|....
T Consensus 339 ~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 339 SYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCTT-CCEECTTTTTTSS
T ss_pred EECCc-cCEEchhHhhCCC
Confidence 77654 6777666555444
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.03 E-value=6.9e-11 Score=111.66 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=67.4
Q ss_pred CCceeEEEeCCCCCcc-c-------cCCCcCCCCCCcEEEccCCCCC---------CCcchhcCCCcCCceEEcccCccc
Q 036985 83 LSRVTELNLDQAGYSG-S-------LSTTSWNLPYLETLDLSNNFFS---------GSIPESLSNLTRLIRLGLSRNSFS 145 (424)
Q Consensus 83 ~~~l~~L~L~~~~l~~-~-------~~~~~~~l~~L~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~L~~n~i~ 145 (424)
..+++.|.+......+ . +..+...+++|+.|.+...... +.+...+..+|+|+.|++++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4678888888766542 1 1234556889999988765331 124455667888999998877311
Q ss_pred ccCCccccCCCcCceEecccCcCCCCchhhcC--CCCCCcEEEeec
Q 036985 146 GEIPASIGSLSSLEELYLDYNNLEGTIPASFN--GLSSLKRLEIQS 189 (424)
Q Consensus 146 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~ 189 (424)
.++. +. +++|++|++..+.+.......+. .+++|++|+|+.
T Consensus 186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 2333 33 78888888888877644333443 678888888753
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=1.3e-09 Score=102.88 Aligned_cols=160 Identities=8% Similarity=0.064 Sum_probs=105.6
Q ss_pred cCCcEEEcccCcCC---------CCChhhhcCCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCC
Q 036985 225 TSLVQISMRNNNLQ---------GTVPESLKLLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTN 295 (424)
Q Consensus 225 ~~L~~L~l~~n~l~---------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 295 (424)
++|+.|.+...... +.+...+..+++|++|++++|.-. .++. + .+++|++|++..|.+.........
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~- 214 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL- 214 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH-
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH-
Confidence 78999988664321 235566788899999999887311 2333 3 378999999998887642111000
Q ss_pred CCcccCCCCcEEEccC--CCCCCC-----Chhhh--cCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEcc
Q 036985 296 DNNIFSSQLIAVDISN--NELQGM-----LPLFM--ALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLG 366 (424)
Q Consensus 296 ~~~~~~~~L~~L~Ls~--n~l~~~-----~~~~l--~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls 366 (424)
...+++|++|+|+. |...+. +...+ ..+|+|+.|+|++|.+.+..+..+.... .+++|++|+|+
T Consensus 215 --~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~-----~~~~L~~LdLs 287 (362)
T 2ra8_A 215 --GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD-----ILPQLETMDIS 287 (362)
T ss_dssp --HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS-----SGGGCSEEECC
T ss_pred --HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc-----cCCCCCEEECC
Confidence 02568899999863 221111 11122 2578999999999998865555554321 35669999999
Q ss_pred CCcCccc----cChhhhhhccCCcEEEccCCCCC
Q 036985 367 GNYLFGA----IPRSLLELQPGSANVRLADNCLY 396 (424)
Q Consensus 367 ~N~l~~~----~p~~~~~l~~~L~~L~l~~N~l~ 396 (424)
.|.+++. ++..+..+ ++|+.|++++|.|+
T Consensus 288 ~n~L~d~G~~~L~~~L~~l-~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 288 AGVLTDEGARLLLDHVDKI-KHLKFINMKYNYLS 320 (362)
T ss_dssp SSCCBHHHHHHHHTTHHHH-TTCSEEECCSBBCC
T ss_pred CCCCChHHHHHHHhhcccC-CcceEEECCCCcCC
Confidence 9998764 34445567 59999999999876
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.82 E-value=3.8e-07 Score=86.86 Aligned_cols=288 Identities=10% Similarity=0.027 Sum_probs=182.7
Q ss_pred CCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccCcCCCCchhhcCCCCC
Q 036985 102 TTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYNNLEGTIPASFNGLSS 181 (424)
Q Consensus 102 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 181 (424)
+++....+|+.+.+... ++.+-..+|.++.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ +......+|.. .+
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 44566678888888654 55445568999999999999754 554556677776 6888777644 44344445555 47
Q ss_pred CcEEEeecccccccCCC-CCCCCCcCEEEccCCcCCCCCCCccc--cCCcEEEcccCcCCC------------CChhhhc
Q 036985 182 LKRLEIQSNKLTGEFPE-LGSLKNLYFLDASDNAISGKLPAILP--TSLVQISMRNNNLQG------------TVPESLK 246 (424)
Q Consensus 182 L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~n~l~~------------~~~~~l~ 246 (424)
|+.+.+..+-.. .... +... +++.+.+..+ ++......+. ..++.+.+..+.... .....+.
T Consensus 115 L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 115 LDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp CSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred cccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 999988765332 2222 4433 5666555433 2222222222 455555554332211 1112233
Q ss_pred CCCCCcEEEeeCCcCCCCcCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCC
Q 036985 247 LLSYLQVVDLSHNKLSGSVPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMP 326 (424)
Q Consensus 247 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~ 326 (424)
....+..+.+...... .....+....+|+.+.+..+ ++.+....+ ..+..|+.+.+..+ ++.+....|.++.
T Consensus 192 ~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f-----~~~~~L~~i~lp~~-v~~I~~~aF~~~~ 263 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAF-----YGMKALDEIAIPKN-VTSIGSFLLQNCT 263 (379)
T ss_dssp TTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTT-----TTCSSCCEEEECTT-CCEECTTTTTTCT
T ss_pred ccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccc-----cCCccceEEEcCCC-ccEeCccccceee
Confidence 4445555555443222 33445666778888887654 444333333 46788999999776 6656667888999
Q ss_pred CCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccChhhhhhccCCcEEEccCCCCCCCCCcccccc
Q 036985 327 KLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPRSLLELQPGSANVRLADNCLYRCPFSFFFCQ 406 (424)
Q Consensus 327 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~L~~L~l~~N~l~~ip~~~~~~~ 406 (424)
+|+.+.+..+ +.......|..+.+ |+.+.+.++.++..-...|.++. +|+.+.+..+ ++.|+...|...
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~--------L~~i~l~~~~i~~I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSN--------LTKVVMDNSAIETLEPRVFMDCV-KLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTT--------CCEEEECCTTCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTC
T ss_pred hhcccccccc-ceeccccccccccc--------cccccccccccceehhhhhcCCC-CCCEEEcCcc-ccEEHHHHhhCC
Confidence 9999999754 55444556665555 99999999988866677888885 9999999755 899988877665
Q ss_pred CCCccccccc
Q 036985 407 GARQKSLVEC 416 (424)
Q Consensus 407 ~~l~~l~l~~ 416 (424)
.+|+.+.+..
T Consensus 333 ~~L~~i~ip~ 342 (379)
T 4h09_A 333 KALSTISYPK 342 (379)
T ss_dssp TTCCCCCCCT
T ss_pred CCCCEEEECC
Confidence 5588887743
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=1.7e-09 Score=92.22 Aligned_cols=123 Identities=9% Similarity=0.032 Sum_probs=57.4
Q ss_pred hhhcCCCCCcEEEeeCC-cCCCC----cCccccCCCCCCEEeccCCcCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCC
Q 036985 243 ESLKLLSYLQVVDLSHN-KLSGS----VPSFVFSHPSLQQLTLSFNQFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGM 317 (424)
Q Consensus 243 ~~l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 317 (424)
..+...++|++|+|++| .+... +...+...++|++|+|++|.+.+.... .+.......++|++|+|++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~-~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF-ALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH-HHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH-HHHHHHHhCCCcCEEECcCCcCCHH
Confidence 34555667777777776 66532 223344456666666666666541110 0000002234555555555555532
Q ss_pred ----ChhhhcCCCCCCEEec--cCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcC
Q 036985 318 ----LPLFMALMPKLSALSL--ENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYL 370 (424)
Q Consensus 318 ----~~~~l~~l~~L~~L~L--~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l 370 (424)
+...+...+.|++|+| ++|.+.......+..... ..++|++|+|++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~----~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE----KNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH----HCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHH----hCCCcCEEeccCCCC
Confidence 2233444455555555 555555433222222211 112255555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=4.6e-09 Score=89.54 Aligned_cols=126 Identities=11% Similarity=0.033 Sum_probs=87.0
Q ss_pred cCccccCCCCCCEEeccCC-cCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCC----ChhhhcCCCCCCEEeccCCcCc
Q 036985 265 VPSFVFSHPSLQQLTLSFN-QFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGM----LPLFMALMPKLSALSLENNKFT 339 (424)
Q Consensus 265 ~~~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~ 339 (424)
+...+...++|++|+|++| .+.+..... +.......++|++|+|++|.+... +...+...+.|++|+|++|.|.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~-l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKA-CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHH-HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHH-HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3445667899999999999 887622111 101113457899999999999753 3345566789999999999998
Q ss_pred ccCchhHHhhcCCCCCCCCCccEEEc--cCCcCccccC----hhhhhhccCCcEEEccCCCCC
Q 036985 340 GMIPTEYAIRVAVPGPGIAPFQRLLL--GGNYLFGAIP----RSLLELQPGSANVRLADNCLY 396 (424)
Q Consensus 340 ~~~~~~~~~~~~l~~~~~~~L~~L~L--s~N~l~~~~p----~~~~~l~~~L~~L~l~~N~l~ 396 (424)
+.....++.... ..++|++|+| ++|.|+.... +.+... ++|++|++++|.++
T Consensus 107 ~~g~~~l~~~L~----~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n-~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQ----SNTSLIELRIDNQSQPLGNNVEMEIANMLEKN-TTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGG----GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC-SSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHH----hCCCceEEEecCCCCCCCHHHHHHHHHHHHhC-CCcCEEeccCCCCC
Confidence 764444443222 2445999999 8899976533 344444 48999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=6.7e-07 Score=80.18 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=38.8
Q ss_pred CCCcEEEccCCCCCC--CChhhhcCCCCCCEEeccCCcCcccCchhHHhhcCCCCCCCCCccEEEccCCcCccccCh---
Q 036985 302 SQLIAVDISNNELQG--MLPLFMALMPKLSALSLENNKFTGMIPTEYAIRVAVPGPGIAPFQRLLLGGNYLFGAIPR--- 376 (424)
Q Consensus 302 ~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~N~l~~~~p~--- 376 (424)
++|++|+|++|.+++ .++..+..+++|+.|+|++|++.+. ..+..+.. + +|++|+|++|.+++.+|.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~-----l-~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG-----L-KLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT-----S-CCSEEECTTSTTGGGCSSHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhccc-----C-CcceEEccCCcCccccCcchh
Confidence 344444444444443 2233445556666666666666543 22333321 1 266666666666655542
Q ss_pred ----hhhhhccCCcEEE
Q 036985 377 ----SLLELQPGSANVR 389 (424)
Q Consensus 377 ----~~~~l~~~L~~L~ 389 (424)
.+..+ |+|+.||
T Consensus 242 y~~~il~~~-P~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERF-PKLLRLD 257 (267)
T ss_dssp HHHHHHHHC-TTCCEES
T ss_pred HHHHHHHHC-cccCeEC
Confidence 13334 5666554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=2.7e-07 Score=82.72 Aligned_cols=104 Identities=23% Similarity=0.305 Sum_probs=71.6
Q ss_pred cCCCCCCcE--EEccCCCCCCCcch----hcCCCcCCceEEcccCcccc--cCCccccCCCcCceEecccCcCCCCchhh
Q 036985 104 SWNLPYLET--LDLSNNFFSGSIPE----SLSNLTRLIRLGLSRNSFSG--EIPASIGSLSSLEELYLDYNNLEGTIPAS 175 (424)
Q Consensus 104 ~~~l~~L~~--L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 175 (424)
+...+.|+. ++++.|... .++. ...++++|++|+|++|.+++ .+|..+..+++|++|+|++|.+.+. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~ 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RE 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GG
T ss_pred cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hh
Confidence 344455555 666666433 2222 22467889999999999886 3456667889999999999998864 33
Q ss_pred cCCCC--CCcEEEeecccccccCCC--------CCCCCCcCEEEc
Q 036985 176 FNGLS--SLKRLEIQSNKLTGEFPE--------LGSLKNLYFLDA 210 (424)
Q Consensus 176 l~~l~--~L~~L~l~~n~l~~~~~~--------l~~l~~L~~L~l 210 (424)
+..+. +|++|++++|.+.+..+. +..+++|+.||=
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 44444 899999999998865542 567788888873
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=5.1e-07 Score=75.21 Aligned_cols=82 Identities=13% Similarity=0.191 Sum_probs=40.6
Q ss_pred ceeEEEeCCCCCccccCCCcCCCCCCcEEEccCCC-CCCCcchhcCCC----cCCceEEcccC-cccccCCccccCCCcC
Q 036985 85 RVTELNLDQAGYSGSLSTTSWNLPYLETLDLSNNF-FSGSIPESLSNL----TRLIRLGLSRN-SFSGEIPASIGSLSSL 158 (424)
Q Consensus 85 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~L~~n-~i~~~~p~~~~~l~~L 158 (424)
+|++||++++.++..--..+..+++|++|+|++|. |++.--..++.+ ++|++|++++| .+++.--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666655554433344555556666665553 443333334443 24555555555 2443322334445555
Q ss_pred ceEecccC
Q 036985 159 EELYLDYN 166 (424)
Q Consensus 159 ~~L~L~~n 166 (424)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=7.2e-07 Score=74.33 Aligned_cols=84 Identities=11% Similarity=0.111 Sum_probs=69.8
Q ss_pred CCCcEEEccCCCCCCCcchhcCCCcCCceEEcccCc-ccccCCccccCC----CcCceEecccCc-CCCCchhhcCCCCC
Q 036985 108 PYLETLDLSNNFFSGSIPESLSNLTRLIRLGLSRNS-FSGEIPASIGSL----SSLEELYLDYNN-LEGTIPASFNGLSS 181 (424)
Q Consensus 108 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 181 (424)
..|+.||++++.|++.--..+.++++|++|+|++|. +++.--..++.+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999987766778999999999999994 775544456654 479999999985 77665667888999
Q ss_pred CcEEEeeccc
Q 036985 182 LKRLEIQSNK 191 (424)
Q Consensus 182 L~~L~l~~n~ 191 (424)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999985
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.78 E-value=4.8e-06 Score=70.66 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=22.2
Q ss_pred hcCCCCCcEEEeeCC-cCCCC----cCccccCCCCCCEEeccCCcCCC
Q 036985 245 LKLLSYLQVVDLSHN-KLSGS----VPSFVFSHPSLQQLTLSFNQFTS 287 (424)
Q Consensus 245 l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~~~~L~~L~L~~n~l~~ 287 (424)
+..-+.|++|+|++| .+... +...+..-..|+.|+|++|.+.+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd 84 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD 84 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence 344556666666664 55422 22334444556666666665554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.74 E-value=1.2e-05 Score=68.18 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=82.7
Q ss_pred cccCCCCCCEEeccCC-cCCCCCCCCCCCCCcccCCCCcEEEccCCCCCCC----ChhhhcCCCCCCEEeccCCcCcccC
Q 036985 268 FVFSHPSLQQLTLSFN-QFTSIQQPAPTNDNNIFSSQLIAVDISNNELQGM----LPLFMALMPKLSALSLENNKFTGMI 342 (424)
Q Consensus 268 ~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~ 342 (424)
.+..-+.|+.|+|++| .+.+... ..+.........|+.|+|++|.+.+. +...+..-+.|++|+|++|.|.+..
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga-~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERI-RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHH-HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHH-HHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 3455688999999985 7765211 11111113457899999999999743 4445667789999999999998766
Q ss_pred chhHHhhcCCCCCCCCCccEEEccCC---cCccc----cChhhhhhccCCcEEEccCCCCC
Q 036985 343 PTEYAIRVAVPGPGIAPFQRLLLGGN---YLFGA----IPRSLLELQPGSANVRLADNCLY 396 (424)
Q Consensus 343 ~~~~~~~~~l~~~~~~~L~~L~Ls~N---~l~~~----~p~~~~~l~~~L~~L~l~~N~l~ 396 (424)
...++.... ..+.|++|+|++| .+... +.+.+..- +.|+.|+++.|.+.
T Consensus 115 a~ala~aL~----~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 115 LARLLRSTL----VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHTT----TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCCHH
T ss_pred HHHHHHHHh----hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCCcc
Confidence 655555333 3455999999876 44432 33444444 58999999888654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.85 E-value=0.0025 Score=50.21 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=37.7
Q ss_pred EEeccCCcCC--CCCCCCCCCCCcccCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeccCCcCc
Q 036985 277 QLTLSFNQFT--SIQQPAPTNDNNIFSSQLIAVDISNNELQGMLPLFMALMPKLSALSLENNKFT 339 (424)
Q Consensus 277 ~L~L~~n~l~--~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 339 (424)
.++.+++.++ .++.. ..++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~--------lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--------FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC--------CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC--------CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666777666 44321 2246777888888877666667777888888888888765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.79 E-value=0.003 Score=49.74 Aligned_cols=56 Identities=23% Similarity=0.433 Sum_probs=33.4
Q ss_pred EEEccCCcCC-CCCCCccccCCcEEEcccCcCCCCChhhhcCCCCCcEEEeeCCcCC
Q 036985 207 FLDASDNAIS-GKLPAILPTSLVQISMRNNNLQGTVPESLKLLSYLQVVDLSHNKLS 262 (424)
Q Consensus 207 ~L~l~~n~l~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 262 (424)
.++.+++.++ ..+|..++.+++.|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4556666654 2444455556666666666666555555666666666666666553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.20 E-value=23 Score=25.65 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=16.5
Q ss_pred CCcCCCCCCcEEEccCCCCCCCcchhcCCCcCCceEEcc
Q 036985 102 TTSWNLPYLETLDLSNNFFSGSIPESLSNLTRLIRLGLS 140 (424)
Q Consensus 102 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 140 (424)
.+|.+++.|+.+.|..+ ++.+-..+|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444555555544433 221223344444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.90 E-value=28 Score=25.22 Aligned_cols=47 Identities=15% Similarity=0.076 Sum_probs=31.3
Q ss_pred CCCCCcchhcCCCcCCceEEcccCcccccCCccccCCCcCceEecccC
Q 036985 119 FFSGSIPESLSNLTRLIRLGLSRNSFSGEIPASIGSLSSLEELYLDYN 166 (424)
Q Consensus 119 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 166 (424)
.++.+-..+|.++..|+.+.+-.+ ++..-..+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444567778888888877654 34345567778888888877653
Done!