BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036986
         (178 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9ZJL3|LON_HELPJ Lon protease OS=Helicobacter pylori (strain J99) GN=lon PE=3 SV=1
          Length = 831

 Score = 31.2 bits (69), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 82  NQRPNMGTINSYKWVPETCDLPRINPVKFLSLMRNKNIGFVGDSLNENFIVSFLCV 137
           ++   +G +N   W P   D+ +I  VK       K  G +GD + E+ I++F  V
Sbjct: 630 DEENKIGIVNGLAWTPVGGDVLKIEAVKIRGKGELKLTGSLGDVMKESAIIAFSVV 685


>sp|Q1XDU9|CHLN_PORYE Light-independent protochlorophyllide reductase subunit N
           OS=Porphyra yezoensis GN=chlN PE=3 SV=1
          Length = 441

 Score = 30.8 bits (68), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 29/139 (20%)

Query: 25  LFLYSSLLSPPTAKTLSFHSTPCNLFSGKWVLQHPSTHKSLYNE------TCPF-QRNAW 77
           L L+ SL   P    L+       +F   W+     T   +  E        PF  R A 
Sbjct: 179 LVLFGSL-PDPVVTQLTMELKKQGIFVSGWLPSKRYTELPVIKEGYYVAGVNPFLSRTAT 237

Query: 78  NCLRNQRPNM-------GTINSYKWVPETCDLPRINPV--------------KFLSLMRN 116
             +R ++  +       G   +  W+ + C +  + P+               ++SL+R 
Sbjct: 238 TLMRRRKTKLIGAPFPIGPDGTRAWIEKICSVMNVKPIGLEDREKAIWASLEDYISLIRG 297

Query: 117 KNIGFVGDSLNENFIVSFL 135
           K++ F+GD+L E  +  FL
Sbjct: 298 KSVFFMGDNLLEVSLARFL 316


>sp|Q3UKK2|CEAM5_MOUSE Carcinoembryonic antigen-related cell adhesion molecule 5 OS=Mus
           musculus GN=Ceacam5 PE=2 SV=1
          Length = 947

 Score = 30.8 bits (68), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 27  LYSSLLSPPTAKTLSFHSTPCNLFSGKWVLQHPSTHKSLYNETCP 71
            YS  +    A+ +S  S   N++S  W  +HPS H  L  E+ P
Sbjct: 118 FYSLRIINKHAEIVSITSIYLNVYSSLWTCEHPSPHAKLTIESVP 162


>sp|C1GTI3|M28P1_PARBA Probable zinc metalloprotease PAAG_01828 OS=Paracoccidioides
          brasiliensis (strain ATCC MYA-826 / Pb01) GN=PAAG_01828
          PE=3 SV=1
          Length = 993

 Score = 30.0 bits (66), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 5  AAKPPPSSLFPYLILLSILLLFLYSSLLSPPTAKTLSFHSTPCNLFSGKWVLQHPSTHKS 64
          A  P P +L   ++ L++L+L L + L+ PP A TL       NL      LQH +    
Sbjct: 17 AFTPLPVTLITTIVYLAVLILVLVTYLVVPP-APTLEMSPRGVNLTEAWRDLQHLTGGFH 75

Query: 65 LYNETCPFQRNAW 77
           YN       +AW
Sbjct: 76 PYNSRRNDDVHAW 88


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,685,552
Number of Sequences: 539616
Number of extensions: 2656111
Number of successful extensions: 4946
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4943
Number of HSP's gapped (non-prelim): 5
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)