BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036987
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 342 bits (877), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 183/288 (63%), Positives = 209/288 (72%), Gaps = 40/288 (13%)
Query: 227 QSAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLT---------------DMVVLMAARAS 271
Q AITKRMTAIEEMAGMDVLCSDKTGTLTLNKL+ D V+L AA AS
Sbjct: 307 QGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMAS 366
Query: 272 TLENQVAIDGAIVSMLAGPKKAR-----VHFLLFNPTDKRAAITYVDGAGIMHRVSKGAP 326
+ENQ AID A+V MLA PK+AR VHFL FNP DKR A+TY+DG+G HRVSKGAP
Sbjct: 367 RVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAP 426
Query: 327 EQILHLAH--KEIEKKVHGIIDKFAECGLRSLAVAWQVINLCRKRGTKDNPGGPWEFVGL 384
EQIL LA ++ KKV IIDK+AE GLRSLAVA QV+ TK++PG PWEFVGL
Sbjct: 427 EQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVV----PEKTKESPGAPWEFVGL 482
Query: 385 LPLFDPPHHDSAETI--------------SDQIAIAKETGRKLGMGTNMYLSSSLLRESK 430
LPLFDPP HDSAETI DQ+AI KETGR+LGMGTNMY SS+LL K
Sbjct: 483 LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHK 542
Query: 431 DETNSALPIDELIEKADGFAGLFPEHKYEIVRRLHDRKHISGMTGDGT 478
D +++P++ELIEKADGFAG+FPEHKYEIV++L +RKHI GMTGDG
Sbjct: 543 DANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGV 590
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/204 (56%), Positives = 146/204 (71%), Gaps = 17/204 (8%)
Query: 26 IPIEEVFENLKC----LTSDDVKERLNLFGYNRLEGKKESKILKYLGCMCNPLSWVMEXX 81
IPIEEVF+ LKC LT+ + ++R+ +FG N+LE KKESK+LK+LG M NPLSWVME
Sbjct: 17 IPIEEVFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEMA 76
Query: 82 XXXXXXXXHGGGKDPDYHDFIGIV--IIINSTTSFKEEXXXXXXXXXLMA-----QSYLR 134
+G G+ PD+ DF+GI+ ++INST SF EE LMA LR
Sbjct: 77 AIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLR 136
Query: 135 DGRWNEEDAAEMVPGDIISIKLGEIVSADARLVEGDPLKIDRFQFCLWSALTGESLPVTK 194
DG+W+E++AA +VPGDI+SIKLG+I+ ADARL+EGDPLK+D+ SALTGESLPVTK
Sbjct: 137 DGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQ------SALTGESLPVTK 190
Query: 195 NPGDGVYSGSTCKQGEIAAVVIAN 218
+PG V+SGSTCKQGEI AVVIA
Sbjct: 191 HPGQEVFSGSTCKQGEIEAVVIAT 214
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 146/294 (49%), Gaps = 55/294 (18%)
Query: 227 QSAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLT-------------DMVVLMAARASTL 273
+ AI ++++AIE +AG+++LCSDKTGTLT NKL+ D+++ AS
Sbjct: 356 KKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVAGVDPEDLMLTACLAASRK 415
Query: 274 ENQV-AIDGAIVSMLAGPKKAR--------VHFLLFNPTDKRAAITYVDGAGIMHRVSKG 324
+ + AID A + L +A+ + F F+P K+ G KG
Sbjct: 416 KKGIDAIDKAFLKSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKG 475
Query: 325 APEQIL------HLAHKEIEKKVHGIIDKFAECGLRSLAVAWQVINLCRKRGTKDNPGGP 378
AP +L H +E+++ + +FA G RSL VA RKRG G
Sbjct: 476 APLFVLKTVEEDHPIPEEVDQAYKNKVAEFATRGFRSLGVA-------RKRGE-----GS 523
Query: 379 WEFVGLLPLFDPPHHDSAETI--------------SDQIAIAKETGRKLGMGTNMYLSSS 424
WE +G++P DPP HD+ +T+ D + IA+ET R+LG+GTN+Y +
Sbjct: 524 WEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAER 583
Query: 425 LLRESKDETNSALPIDELIEKADGFAGLFPEHKYEIVRRLHDRKHISGMTGDGT 478
L + + + + +E ADGFA +FP+HKY +V L R ++ MTGDG
Sbjct: 584 LGLGGGGDMPGS-EVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGV 636
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 101/190 (53%), Gaps = 23/190 (12%)
Query: 38 LTSDDVKERLNLFGYNRLEGKKESKILKYLGCMCNPLSWVMEXXXXXXXXXXHGGGKDPD 97
LTS++V +R +G N+++ +KE+ LK+LG P+ +VME D
Sbjct: 88 LTSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLE-------D 140
Query: 98 YHDFIGIV---IIINSTTSFKEEXXXXXXXXXL-----MAQSYLRDGRWNEEDAAEMVPG 149
+ DF G++ +++N+ F +E L + LRDG E +A E+VPG
Sbjct: 141 WVDF-GVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPG 199
Query: 150 DIISIKLGEIVSADARLVEGDP-LKIDRFQFCLWSALTGESLPVTKNPGDGVYSGSTCKQ 208
DI+ ++ G I+ AD R+V D L++D+ SALTGESL V K+ GD V++ S K+
Sbjct: 200 DILQVEEGTIIPADGRIVTDDAFLQVDQ------SALTGESLAVDKHKGDQVFASSAVKR 253
Query: 209 GEIAAVVIAN 218
GE V+ A
Sbjct: 254 GEAFVVITAT 263
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 131 SYLRDGRWNEEDAAEMVPGDIISIKLGEIVSADARLVEGDPLKIDRFQFCLWSALTGESL 190
+ +RDG + +A ++V GD++ +K G+ V AD R+++ K+D S+LTGES
Sbjct: 180 TVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDN------SSLTGESE 233
Query: 191 PVTKNP 196
P T++P
Sbjct: 234 PQTRSP 239
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 227 QSAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLT 260
++ + K + A+E + V+CSDKTGTLT N++T
Sbjct: 364 KNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMT 397
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 133 LRDGRWNEEDAAEMVPGDIISIKLGEIVSADARLVEGDPLKIDRFQFCLWSALTGESLPV 192
+R+G +A E+V GD++ +K G+ + AD R++ + K+D S+LTGES P
Sbjct: 141 IRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDN------SSLTGESEPQ 194
Query: 193 TKNP 196
T++P
Sbjct: 195 TRSP 198
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 227 QSAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTDMVVLMAA-----RASTLENQ--VAI 279
++ + K + A+E + +CS KTGTLT N++T V M + A T ENQ V+
Sbjct: 323 KNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMT--VAHMWSDNQIHEADTTENQSGVSF 380
Query: 280 DGAIVSMLA 288
D + LA
Sbjct: 381 DKTSATWLA 389
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 133 LRDGRWNEEDAAEMVPGDIISIKLGEIVSADARLVEGDPLKIDRFQFCLWSALTGESLPV 192
+R+G +A E+V GD++ +K G+ + AD R++ + K+D S+LTGES P
Sbjct: 147 IRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDN------SSLTGESEPQ 200
Query: 193 TKNP 196
T++P
Sbjct: 201 TRSP 204
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 227 QSAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTDMVVLMAA-----RASTLENQ--VAI 279
++ + K + A+E + +CSDKTGTLT N++T V M + A T ENQ V+
Sbjct: 329 KNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMT--VAHMWSDNQIHEADTTENQSGVSF 386
Query: 280 DGAIVSMLA 288
D + LA
Sbjct: 387 DKTSATWLA 395
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 133 LRDGRWNEEDAAEMVPGDIISIKLGEIVSADARLVEGDPLKIDRFQFCLWSALTGESLPV 192
+RDG + +A +V GD++ +K G+ + AD R++ K+D S+LTGES P
Sbjct: 177 IRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDN------SSLTGESEPQ 230
Query: 193 TKNP 196
T++P
Sbjct: 231 TRSP 234
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 227 QSAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLT 260
++ + K + A+E + +CSDKTGTLT N++T
Sbjct: 359 KNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMT 392
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 111/292 (38%), Gaps = 53/292 (18%)
Query: 239 EMAGMDVLCSD-------------KTGTLTLNKLTDMVVLMAARASTLENQVAIDGAIVS 285
E+A + LC+D K G T LT +V M + + N ++ A
Sbjct: 412 ELATICALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANAC 471
Query: 286 MLAGPKKARVHFLLFNPTDKRAAITYVDGAGIMHRVS-----KGAPEQILHLAHK----- 335
+ + F L D+++ Y A V KGAPE ++ +
Sbjct: 472 NSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGT 531
Query: 336 -------EIEKKVHGIIDKFAEC--GLRSLAVAWQVINLCRKRGTKDNPGGPWE------ 380
+++K+ +I ++ LR LA+A + R+ D+ E
Sbjct: 532 TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEYETDLT 591
Query: 381 FVGLLPLFDPPHHDSAETIS----DQIAIAKETGRKLGMGTNMYLSSSLLRESKDETNSA 436
FVG++ + DPP + +I I + TG G + + E++D + A
Sbjct: 592 FVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVADRA 651
Query: 437 --------LPIDELIE---KADGFAGLFPEHKYEIVRRLHDRKHISGMTGDG 477
LP+ E E +A FA + P HK +IV L I+ MTGDG
Sbjct: 652 YTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDG 703
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 41/183 (22%)
Query: 38 LTSDDVKERLNLFGYNRL---EGKKE------------SKILKYLGCMCNPLSWVMEXXX 82
LT D VK L +G+N L EGK +IL C+ L+W E
Sbjct: 24 LTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVRILLLAACISFVLAWFEEGEE 83
Query: 83 XXXXXXXHGGGKDPDYHDFIGIVIII-NSTTSFKEEXXXXXXXXXL------MAQSYLRD 135
F+ ++I+I N+ +E L M + Y D
Sbjct: 84 TVTAFV----------EPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRAD 133
Query: 136 GRWNEE-DAAEMVPGDIISIKLGEIVSADARL--VEGDPLKIDRFQFCLWSALTGESLPV 192
+ + A ++VPGDI+ + +G+ V AD R+ ++ L++D+ S LTGES+ V
Sbjct: 134 RKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQ------SILTGESVSV 187
Query: 193 TKN 195
K+
Sbjct: 188 IKH 190
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 227 QSAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLT 260
++AI + + ++E + V+CSDKTGTLT N+++
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMS 362
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 41/183 (22%)
Query: 38 LTSDDVKERLNLFGYNRL---EGKKE------------SKILKYLGCMCNPLSWVMEXXX 82
LT D VK L +G+N L EGK +IL C+ L+W E
Sbjct: 24 LTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEE 83
Query: 83 XXXXXXXHGGGKDPDYHDFIGIVIII-NSTTSFKEEXXXXXXXXXL------MAQSYLRD 135
F+ ++I+I N+ +E L M + Y D
Sbjct: 84 TITAFV----------EPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRAD 133
Query: 136 GRWNEE-DAAEMVPGDIISIKLGEIVSADARL--VEGDPLKIDRFQFCLWSALTGESLPV 192
+ + A ++VPGDI+ + +G+ V AD R+ ++ L++D+ S LTGES+ V
Sbjct: 134 RKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQ------SILTGESVSV 187
Query: 193 TKN 195
K+
Sbjct: 188 IKH 190
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 114/293 (38%), Gaps = 54/293 (18%)
Query: 239 EMAGMDVLCSD-------------KTGTLTLNKLTDMVVLMAARASTLENQVAIDGAIVS 285
E+A + LC+D K G T LT +V M + + N ++ A
Sbjct: 412 ELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANAC 471
Query: 286 MLAGPKKARVHFLLFNPTDKRAAITYVDGA-----GIMHRV-SKGAPEQILHLAHK---- 335
+ + F L D+++ Y A + +++ KGAPE ++ +
Sbjct: 472 NSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVG 531
Query: 336 --------EIEKKVHGIIDKFAEC--GLRSLAVAWQVINLCRKRGTKDNPGGPWE----- 380
+++K+ +I ++ LR LA+A + R+ D+ E
Sbjct: 532 TTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDL 591
Query: 381 -FVGLLPLFDPPHHDSAETIS----DQIAIAKETGRKLGMGTNMYLSSSLLRESKDETNS 435
FVG++ + DPP + +I I + TG G + + E+++ +
Sbjct: 592 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADR 651
Query: 436 A--------LPIDELIE---KADGFAGLFPEHKYEIVRRLHDRKHISGMTGDG 477
A LP+ E E +A FA + P HK +IV L I+ MTGDG
Sbjct: 652 AYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDG 704
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 227 QSAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLT 260
++AI + + ++E + V+CS KTGTLT N+++
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMS 362
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 133 LRDGRWNEEDAAEMVPGDIISIKLGEIVSADARLVEGDPLKIDRFQFCLWSALTGESLPV 192
+RDG+ E+ GDI+ ++ GE + D +VEG+ + S ++GE +PV
Sbjct: 138 IRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGE-------SYVDESMISGEPVPV 190
Query: 193 TKNPGDGVYSGSTCKQG 209
K+ GD V+ + G
Sbjct: 191 LKSKGDEVFGATINNTG 207
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 41/183 (22%)
Query: 38 LTSDDVKERLNLFGYNRL---EGKKE------------SKILKYLGCMCNPLSWVMEXXX 82
LT D VK L +G+N L EGK +IL C+ L+W E
Sbjct: 25 LTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEE 84
Query: 83 XXXXXXXHGGGKDPDYHDFIGIVIII-NSTTSFKEEXXXXXXXXXL------MAQSYLRD 135
F+ ++I+I N+ +E L M + Y D
Sbjct: 85 TITAFV----------EPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRAD 134
Query: 136 GRWNEE-DAAEMVPGDIISIKLGEIVSADARL--VEGDPLKIDRFQFCLWSALTGESLPV 192
+ + A ++VPGDI+ + +G+ V AD R+ ++ L++D+ S LTGES+ V
Sbjct: 135 RKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQ------SILTGESVSV 188
Query: 193 TKN 195
K+
Sbjct: 189 IKH 191
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 114/293 (38%), Gaps = 54/293 (18%)
Query: 239 EMAGMDVLCSD-------------KTGTLTLNKLTDMVVLMAARASTLENQVAIDGAIVS 285
E+A + LC+D K G T LT +V M + + N ++ A
Sbjct: 413 ELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANAC 472
Query: 286 MLAGPKKARVHFLLFNPTDKRAAITYVDGA-----GIMHRV-SKGAPEQILHLAHK---- 335
+ + F L D+++ Y A + +++ KGAPE ++ +
Sbjct: 473 NSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVG 532
Query: 336 --------EIEKKVHGIIDKFAEC--GLRSLAVAWQVINLCRKRGTKDNPGGPWE----- 380
+++K+ +I ++ LR LA+A + R+ D+ E
Sbjct: 533 TTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDL 592
Query: 381 -FVGLLPLFDPPHHDSAETIS----DQIAIAKETGRKLGMGTNMYLSSSLLRESKDETNS 435
FVG++ + DPP + +I I + TG G + + E+++ +
Sbjct: 593 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADR 652
Query: 436 A--------LPIDELIE---KADGFAGLFPEHKYEIVRRLHDRKHISGMTGDG 477
A LP+ E E +A FA + P HK +IV L I+ MTGDG
Sbjct: 653 AYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDG 705
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 227 QSAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLT 260
++AI + + ++E + V+CSDKTGTLT N+++
Sbjct: 330 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMS 363
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 41/183 (22%)
Query: 38 LTSDDVKERLNLFGYNRL---EGKKE------------SKILKYLGCMCNPLSWVMEXXX 82
LT D VK L +G+N L EGK +IL C+ L+W E
Sbjct: 24 LTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEE 83
Query: 83 XXXXXXXHGGGKDPDYHDFIGIVIII-NSTTSFKEEXXXXXXXXXL------MAQSYLRD 135
F+ ++I+I N+ +E L M + Y D
Sbjct: 84 TITAFV----------EPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRAD 133
Query: 136 GRWNEE-DAAEMVPGDIISIKLGEIVSADARL--VEGDPLKIDRFQFCLWSALTGESLPV 192
+ + A ++VPGDI+ + +G+ V AD R+ ++ L++D+ S LTGES+ V
Sbjct: 134 RKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQ------SILTGESVSV 187
Query: 193 TKN 195
K+
Sbjct: 188 IKH 190
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 114/293 (38%), Gaps = 54/293 (18%)
Query: 239 EMAGMDVLCSD-------------KTGTLTLNKLTDMVVLMAARASTLENQVAIDGAIVS 285
E+A + LC+D K G T LT +V M + + N ++ A
Sbjct: 412 ELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANAC 471
Query: 286 MLAGPKKARVHFLLFNPTDKRAAITYVDGA-----GIMHRV-SKGAPEQILHLAHK---- 335
+ + F L D+++ Y A + +++ KGAPE ++ +
Sbjct: 472 NSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVG 531
Query: 336 --------EIEKKVHGIIDKFAEC--GLRSLAVAWQVINLCRKRGTKDNPGGPWE----- 380
+++K+ +I ++ LR LA+A + R+ D+ E
Sbjct: 532 TTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDL 591
Query: 381 -FVGLLPLFDPPHHDSAETIS----DQIAIAKETGRKLGMGTNMYLSSSLLRESKDETNS 435
FVG++ + DPP + +I I + TG G + + E+++ +
Sbjct: 592 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADR 651
Query: 436 A--------LPIDELIE---KADGFAGLFPEHKYEIVRRLHDRKHISGMTGDG 477
A LP+ E E +A FA + P HK +IV L I+ MTGDG
Sbjct: 652 AYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDG 704
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 227 QSAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLT 260
++AI + + ++E + V+CSDKTGTLT N+++
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMS 362
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 133 LRDGRWNEEDAAEMVPGDIISIKLGEIVSADARLVEGDPLKIDRFQFCLWSALTGESLPV 192
+RDG+ E+ GDI+ ++ GE + D +VEG+ + S ++GE +PV
Sbjct: 216 IRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGE-------SYVDESMISGEPVPV 268
Query: 193 TKNPGDGVYSGSTCKQG 209
K+ GD V+ + G
Sbjct: 269 LKSKGDEVFGATINNTG 285
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 133 LRDGRWNEEDAAEMVPGDIISIKLGEIVSADARLVEGDPLKIDRFQFCLWSALTGESLPV 192
+RDG+ E+ GDI+ ++ GE + D +VEG+ +D S ++GE +PV
Sbjct: 17 IRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDE------SMISGEPVPV 69
Query: 193 TKNPGDGVYSGSTCKQG 209
K+ GD V+ + G
Sbjct: 70 LKSKGDEVFGATINNTG 86
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 149 GDIISIKLGEIVSADARLVEGDPLKIDRFQFCLWSALTGESLPVTKNPGDGVYSGSTCKQ 208
GDII + G D R++EG + +D S +TGE++PV K PG V +GS +
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHSM-VDE------SLITGEAMPVAKKPGSTVIAGSINQN 97
Query: 209 GEI 211
G +
Sbjct: 98 GSL 100
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 135 DGRWNEEDAAEMVPGDIISIKLGEIVSADARLVEGDPLKIDRFQFCLWSALTGESLPVTK 194
DG E + GD++ ++ GE + D + EG F S +TGE +PV K
Sbjct: 233 DGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGR-------SFVDESMVTGEPIPVAK 285
Query: 195 NPGDGVYSGSTCKQ 208
V G+T Q
Sbjct: 286 EASAKVI-GATINQ 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,317,778
Number of Sequences: 62578
Number of extensions: 584063
Number of successful extensions: 1435
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1380
Number of HSP's gapped (non-prelim): 42
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)