BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036989
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 229 bits (584), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/307 (44%), Positives = 178/307 (57%), Gaps = 17/307 (5%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QLS D YAKSCP L Q+V + K + IRL FHDCFV GCD S+L+ G
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLL---DG 57
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ +EK A+ N + GFE I KA VE+ CPGVVSCADIL +AARD V L+GGP +
Sbjct: 58 AD--SEKLAIPNIN-SARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGW 114
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLTIEDMVVLSGAHTIGFAHCE 192
+V GR DG ++ + NLP +D II F A L I D+V LSGAHT G A C
Sbjct: 115 RVALGRKDGLVANQNSAN-NLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCA 173
Query: 193 HFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYAN- 251
F +RL+++ G PD ++ LL L+ CP GGN++I AP D +T FD+ Y+ N
Sbjct: 174 VFSNRLFNFTGAGNPDATLETSLLSNLQTVCP-LGGNSNITAPLDRSTTDTFDNNYFKNL 232
Query: 252 LEGKLGLLASDQVLFLDP----RTKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKH 307
LEGK GLL+SDQ+LF TK LV+ + + FF+ F AM +MG+I
Sbjct: 233 LEGK-GLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS---NGAS 288
Query: 308 GEKRKDC 314
GE R +C
Sbjct: 289 GEVRTNC 295
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/304 (41%), Positives = 163/304 (53%), Gaps = 5/304 (1%)
Query: 14 LSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPGS 73
L + +Y SCP E LV + F P IR+ FHDCFV GCD S+L+ + +
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDST--A 59
Query: 74 KELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYYQ 133
AEKDA+ N + GFE I AK+ VE+ CP VSCADILA AARD +LAG YQ
Sbjct: 60 NNTAEKDAIPNNP-SLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQ 118
Query: 134 VKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLTIEDMVVLSGAHTIGFAHCEH 193
V GR DG +S+AS +P Q+I F K LT ++MV LSGAH+IG AHC
Sbjct: 119 VPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSS 178
Query: 194 FVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGN-TDIVAPFDVTTPFLFDHAYYANL 252
F +RLY++ DP + P LR CP T I D+ TP + D+ YY +
Sbjct: 179 FTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGV 238
Query: 253 EGKLGLLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHGEKRK 312
+ LGLL SDQ L + + V+ + + FA AM KMG I V G + GE R
Sbjct: 239 QLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQ-GEIRT 297
Query: 313 DCSM 316
+CS+
Sbjct: 298 NCSV 301
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 163/306 (53%), Gaps = 9/306 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y SCP + +V + + P + +RL FHDCFV GCD SIL+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ EKDA GN + GF I + KA VES CP VSCAD+L IAA+ V LAGGP +
Sbjct: 62 FR--TEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLT-IEDMVVLSGAHTIGFAHC 191
+V GR D + NLP+ T+ Q+ F GL D+V LSG HT G C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 192 EHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYAN 251
+ RLY++ T PDP ++ L+ LR CP GN + FD+ TP +FD+ YY N
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-LNGNLSALVDFDLRTPTIFDNKYYVN 237
Query: 252 LEGKLGLLASDQVLFLDPR---TKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHG 308
LE + GL+ SDQ LF P T LV+ Q FF AF AM++MG+I G G
Sbjct: 238 LEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG-TQG 296
Query: 309 EKRKDC 314
+ R +C
Sbjct: 297 QIRLNC 302
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 162/306 (52%), Gaps = 9/306 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y SCP + +V + + P + +RL FHDCFV GCD SIL+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ EKDA GN + GF I + KA VES CP VSCAD+L IAA+ V LAGGP +
Sbjct: 62 FR--TEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLT-IEDMVVLSGAHTIGFAHC 191
+V GR D + NLP T+ Q+ F GL D+V LSG HT G C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 192 EHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYAN 251
+ RLY++ T PDP ++ L+ LR CP GN + FD+ TP +FD+ YY N
Sbjct: 179 RSIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-LNGNLSALVDFDLRTPTIFDNKYYVN 237
Query: 252 LEGKLGLLASDQVLFLDPR---TKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHG 308
LE + GL+ SDQ LF P T LV+ Q FF AF AM++MG+I G G
Sbjct: 238 LEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG-TQG 296
Query: 309 EKRKDC 314
+ R +C
Sbjct: 297 QIRLNC 302
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 162/306 (52%), Gaps = 9/306 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y SCP + +V + + P + +RL FHDCFV GCD SIL+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ EKDA GN + GF I + KA VES CP VSCAD+L IAA+ V LAGGP +
Sbjct: 61 FR--TEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLT-IEDMVVLSGAHTIGFAHC 191
+V GR D + NLP T+ Q+ F GL D+V LSG HT G C
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 177
Query: 192 EHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYAN 251
+ RLY++ T PDP ++ L+ LR CP GN + FD+ TP +FD+ YY N
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-LNGNLSALVDFDLRTPTIFDNKYYVN 236
Query: 252 LEGKLGLLASDQVLFLDPR---TKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHG 308
LE + GL+ SDQ LF P T LV+ Q FF AF AM++MG+I G G
Sbjct: 237 LEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG-TQG 295
Query: 309 EKRKDC 314
+ R +C
Sbjct: 296 QIRLNC 301
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 221 bits (562), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 162/306 (52%), Gaps = 9/306 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y SCP + +V + + P + +RL FHDCFV GCD SIL+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ EKDA GN + GF I + KA VES CP VSCAD+L IAA+ V LAGGP +
Sbjct: 62 FR--TEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLT-IEDMVVLSGAHTIGFAHC 191
+V GR D + NLP T+ Q+ F GL D+V LSG HT G C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 192 EHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYAN 251
+ RLY++ T PDP ++ L+ LR CP GN + FD+ TP +FD+ YY N
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-LNGNLSALVDFDLRTPTIFDNKYYVN 237
Query: 252 LEGKLGLLASDQVLFLDPR---TKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHG 308
LE + GL+ SDQ LF P T LV+ Q FF AF AM++MG+I G G
Sbjct: 238 LEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG-TQG 296
Query: 309 EKRKDC 314
+ R +C
Sbjct: 297 QIRLNC 302
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 221 bits (562), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 162/306 (52%), Gaps = 9/306 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y SCP + +V + + P + +RL FHDCFV GCD SIL+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ EKDA GN + GF I + KA VES CP VSCAD+L IAA+ V LAGGP +
Sbjct: 61 FR--TEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLT-IEDMVVLSGAHTIGFAHC 191
+V GR D + NLP T+ Q+ F GL D+V LSG HT G C
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 177
Query: 192 EHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYAN 251
+ RLY++ T PDP ++ L+ LR CP GN + FD+ TP +FD+ YY N
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-LNGNLSALVDFDLRTPTIFDNKYYVN 236
Query: 252 LEGKLGLLASDQVLFLDPR---TKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHG 308
LE + GL+ SDQ LF P T LV+ Q FF AF AM++MG+I G G
Sbjct: 237 LEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG-TQG 295
Query: 309 EKRKDC 314
+ R +C
Sbjct: 296 QIRLNC 301
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 221 bits (562), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 162/306 (52%), Gaps = 9/306 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y SCP + +V + + P + +RL FHDCFV GCD SIL+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ EKDA GN + GF I + KA VES CP VSCAD+L IAA+ V LAGGP +
Sbjct: 61 FR--TEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLT-IEDMVVLSGAHTIGFAHC 191
+V GR D + NLP T+ Q+ F GL D+V LSG HT G C
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 177
Query: 192 EHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYAN 251
+ RLY++ T PDP ++ L+ LR CP GN + FD+ TP +FD+ YY N
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-LNGNLSALVDFDLRTPTIFDNKYYVN 236
Query: 252 LEGKLGLLASDQVLFLDPR---TKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHG 308
LE + GL+ SDQ LF P T LV+ Q FF AF AM++MG+I G G
Sbjct: 237 LEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG-TQG 295
Query: 309 EKRKDC 314
+ R +C
Sbjct: 296 QIRLNC 301
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 220 bits (561), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 162/306 (52%), Gaps = 9/306 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y SCP + +V + + P + +RL FHDCFV GCD SIL+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ EKDA GN + GF I + KA VES CP VSCAD+L IAA+ V LAGGP +
Sbjct: 62 FR--TEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLT-IEDMVVLSGAHTIGFAHC 191
+V GR D + NLP T+ Q+ F GL D+V LSG HT G C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 192 EHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYAN 251
+ RLY++ T PDP ++ L+ LR CP GN + FD+ TP +FD+ YY N
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-LNGNLSALVDFDLRTPTIFDNKYYVN 237
Query: 252 LEGKLGLLASDQVLFLDPR---TKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHG 308
LE + GL+ SDQ LF P T LV+ Q FF AF AM++MG+I G G
Sbjct: 238 LEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG-TQG 296
Query: 309 EKRKDC 314
+ R +C
Sbjct: 297 QIRLNC 302
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 220 bits (561), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 170/304 (55%), Gaps = 7/304 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y+ +CP +V S Q + G + IRL FHDCFV GCD SIL+ G
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILL-DDTG 60
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
S + +EK+A N + GF + K +E+ CPGVVSC+D+LA+A+ V LAGGP +
Sbjct: 61 SIQ-SEKNAGPNVN-SARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSW 118
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLTIEDMVVLSGAHTIGFAHCE 192
V GR D + + ++P ++ I F+A GL D+V LSGAHT G A C
Sbjct: 119 TVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCG 178
Query: 193 HFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYANL 252
F +RL+++ GT PDP ++ LL L+ CP G+ + D++TP FD+ Y+ANL
Sbjct: 179 VFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQ-NGSASTITNLDLSTPDAFDNNYFANL 237
Query: 253 EGKLGLLASDQVLF--LDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHGEK 310
+ GLL SDQ LF T ++V ++ FFQAFA +M MG+I G +GE
Sbjct: 238 QSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTG-SNGEI 296
Query: 311 RKDC 314
R DC
Sbjct: 297 RLDC 300
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 162/306 (52%), Gaps = 9/306 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y SCP + +V + + P + +RL FHDCFV GCD SIL+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ EKDA GN + GF I + KA VES CP VSCAD+L IAA+ V LAGGP +
Sbjct: 61 FR--TEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLT-IEDMVVLSGAHTIGFAHC 191
+V GR D + NLP T+ Q+ F GL D+V LSG H+ G C
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQC 177
Query: 192 EHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYAN 251
+ RLY++ T PDP ++ L+ LR CP GN + FD+ TP +FD+ YY N
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-LNGNLSALVDFDLRTPTIFDNKYYVN 236
Query: 252 LEGKLGLLASDQVLFLDPR---TKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHG 308
LE + GL+ SDQ LF P T LV+ Q FF AF AM++MG+I G G
Sbjct: 237 LEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG-TQG 295
Query: 309 EKRKDC 314
+ R +C
Sbjct: 296 QIRLNC 301
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 161/306 (52%), Gaps = 9/306 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y SCP + +V + + P + +RL FHDCFV GCD SIL+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ EKDA GN + GF I + KA VES CP VSCAD+L IAA+ V LAGGP +
Sbjct: 62 FR--TEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLT-IEDMVVLSGAHTIGFAHC 191
+V GR D + NLP T+ Q+ F GL D+V LSG HT G C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 192 EHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYAN 251
+ RLY++ T PDP ++ L+ LR CP GN + D+ TP +FD+ YY N
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-LNGNLSALVDMDLRTPTIFDNKYYVN 237
Query: 252 LEGKLGLLASDQVLFLDPR---TKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHG 308
LE + GL+ SDQ LF P T LV+ Q FF AF AM++MG+I G G
Sbjct: 238 LEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG-TQG 296
Query: 309 EKRKDC 314
+ R +C
Sbjct: 297 QIRLNC 302
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/302 (43%), Positives = 170/302 (56%), Gaps = 14/302 (4%)
Query: 14 LSVDYYAKSCPQ-LEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
LS ++YA CP L + +V S KEA + G + +RL FHDCFV+GCD S+L+
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARM-GASLLRLHFHDCFVQGCDASVLL--DDT 58
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
S EK A N + + GFE I K+ VES CPGVVSCADILA+AARD V GG +
Sbjct: 59 SNFTGEKTAGPNAN-SIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASW 117
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLTIEDMVVLSGAHTIGFAHCE 192
V GR D + S +LP + +I F+ KG T +++V LSGAHTIG A C
Sbjct: 118 NVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCT 177
Query: 193 HFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYANL 252
F +R+Y+ + IDP ++L+ CP GG+T++ +PFDVTTP FD+AYY NL
Sbjct: 178 AFRTRIYN-------ESNIDPTYAKSLQANCPSVGGDTNL-SPFDVTTPNKFDNAYYINL 229
Query: 253 EGKLGLLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHGEKRK 312
K GLL SDQ LF T S V + F F AM KMG++ G G+ R
Sbjct: 230 RNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTS-GQIRT 288
Query: 313 DC 314
+C
Sbjct: 289 NC 290
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 161/306 (52%), Gaps = 9/306 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y SCP + +V + + P + +RL FHDCFV GCD SIL+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ EKDA GN + GF I + KA VES CP VSCAD+L IAA+ V LAGGP +
Sbjct: 61 FR--TEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLT-IEDMVVLSGAHTIGFAHC 191
+V GR D + NLP T+ Q+ F GL D+V L G HT G C
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQC 177
Query: 192 EHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYAN 251
+ RLY++ T PDP ++ L+ LR CP GN + FD+ TP +FD+ YY N
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-LNGNLSALVDFDLRTPTIFDNKYYVN 236
Query: 252 LEGKLGLLASDQVLFLDPR---TKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHG 308
LE + GL+ SDQ LF P T LV+ Q FF AF AM++MG+I G G
Sbjct: 237 LEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG-TQG 295
Query: 309 EKRKDC 314
+ R +C
Sbjct: 296 QIRLNC 301
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 161/306 (52%), Gaps = 9/306 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y SCP + +V + + P + +RL F DCFV GCD SIL+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ EKDA GN + GF I + KA VES CP VSCAD+L IAA+ V LAGGP +
Sbjct: 62 FR--TEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLT-IEDMVVLSGAHTIGFAHC 191
+V GR D + NLP T+ Q+ F GL D+V LSG HT G C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 192 EHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYAN 251
+ RLY++ T PDP ++ L+ LR CP GN + FD+ TP +FD+ YY N
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-LNGNLSALVDFDLRTPTIFDNKYYVN 237
Query: 252 LEGKLGLLASDQVLFLDPR---TKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHG 308
LE + GL+ SDQ LF P T LV+ Q FF AF AM++MG+I G G
Sbjct: 238 LEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG-TQG 296
Query: 309 EKRKDC 314
+ R +C
Sbjct: 297 QIRLNC 302
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/306 (39%), Positives = 160/306 (52%), Gaps = 9/306 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y SCP + +V + + P + + L F DCFV GCD SIL+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ EKDA GN + GF I + KA VES CP VSCAD+L IAA+ V LAGGP +
Sbjct: 61 FR--TEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLT-IEDMVVLSGAHTIGFAHC 191
+V GR D + NLP T+ Q+ F GL D+V LSG HT G C
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 177
Query: 192 EHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYAN 251
+ RLY++ T PDP ++ L+ LR CP GN + FD+ TP +FD+ YY N
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-LNGNLSALVDFDLRTPTIFDNKYYVN 236
Query: 252 LEGKLGLLASDQVLFLDPR---TKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHG 308
LE + GL+ SDQ LF P T LV+ Q FF AF AM++MG+I G G
Sbjct: 237 LEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG-TQG 295
Query: 309 EKRKDC 314
+ R +C
Sbjct: 296 QIRLNC 301
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 204 bits (518), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 176/310 (56%), Gaps = 20/310 (6%)
Query: 14 LSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILI---ATK 70
LS D+Y ++CP+ E +V + ++ +RL FHDCFV+GCD S+L+ AT
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 71 PGSKELAEKDALGNKDLRVEGFESIRKAKALVESKCPG-VVSCADILAIAARDYVHLAGG 129
PG E+ A N LR F+++ + +E +C G VVSC+DILA+AARD V ++GG
Sbjct: 69 PG-----EQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGG 123
Query: 130 PYYQVKKGRWDGKISMASR--VPFNLPRANSTIDQIIKIFNAKGLTIEDMVVLSGAHTIG 187
P Y+V GR D + S AS V +LP +S + ++ + GL D+V +SG HTIG
Sbjct: 124 PDYRVPLGRRDSR-SFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIG 182
Query: 188 FAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHA 247
AHC F RL+ +PDP I P L L+ CP G TD DV TP +FD+
Sbjct: 183 LAHCSSFEDRLF-----PRPDPTISPTFLSRLKRTCPAKG--TDRRTVLDVRTPNVFDNK 235
Query: 248 YYANLEGKLGLLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKH 307
YY +L + GL SDQ LF + T+ +V+ + +Q FF+ F V++ KMG + V R
Sbjct: 236 YYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRV-RTSDQ 294
Query: 308 GEKRKDCSMH 317
GE R++CS+
Sbjct: 295 GEVRRNCSVR 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 168/306 (54%), Gaps = 13/306 (4%)
Query: 14 LSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPGS 73
L+ +YA +CP +V ++ Q F+ G + IRL FHDCFV GCD SIL+
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNS--G 61
Query: 74 KELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYYQ 133
++EK+A N + GF + K +E+ CPGVVSC D+LA+A++ V L+GGP +
Sbjct: 62 SIISEKNAGPNAN-SARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWT 120
Query: 134 VKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLTIEDMVVLSGAHTIGFAHCEH 193
V GR D + + ++P + I F+A GL D+V LSGAHT G A C
Sbjct: 121 VDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGV 180
Query: 194 FVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG---GNTDIVAPFDVTTPFLFDHAYYA 250
F +RL+++ G PDP ++ LL L+ CP G G+T++ D++TP FD+ Y+
Sbjct: 181 FSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNL----DLSTPDAFDNNYFT 236
Query: 251 NLEGKLGLLASDQVLF--LDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHG 308
NL+ GLL SDQ LF T ++V ++ FFQAFA +M MG+I G G
Sbjct: 237 NLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTG-SSG 295
Query: 309 EKRKDC 314
E R DC
Sbjct: 296 EIRLDC 301
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 163/306 (53%), Gaps = 7/306 (2%)
Query: 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPG 72
QL+ +Y ++CP L +V V P G + +RL FHDCFV+GCDGS+L+
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 73 SKELAEKDALGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYY 132
+ +E+DAL N + + G + + K VE+ CP VSCADILAIAA L GGP +
Sbjct: 61 IE--SEQDALPNIN-SIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGW 117
Query: 133 QVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLTIEDMVVLSGAHTIGFAHCE 192
V GR D + + NLP + Q+ F +GL D+V LSG HT G A C
Sbjct: 118 PVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCS 177
Query: 193 HFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYANL 252
F++RLY++ T PDP ++ L LR CP D + D++TP FD+ YY+NL
Sbjct: 178 TFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQ-NATGDNLTNLDLSTPDQFDNRYYSNL 236
Query: 253 EGKLGLLASDQVLFLDP--RTKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHGEK 310
GLL SDQ LF P T +V ++ FF F V+M KMG+IGV G GE
Sbjct: 237 LQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTG-DEGEI 295
Query: 311 RKDCSM 316
R C+
Sbjct: 296 RLQCNF 301
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 106/269 (39%), Gaps = 37/269 (13%)
Query: 45 GPATIRLFFH-----DCFV-EGCDGSILIATKPGSKELAEKDALGNKDLRVEGFESIRKA 98
GP+ IRL +H DCF +G S + KP E GNK G + RKA
Sbjct: 27 GPSLIRLAWHEAASYDCFKKDGSPNSASMRFKP------ECLYAGNK-----GLDIPRKA 75
Query: 99 KALVESKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANS 158
++ K P + S AD+ +AA + GGP GR D K LP +
Sbjct: 76 LETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSK 134
Query: 159 TIDQIIKIFNAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDP-AIDPRLLR 217
T + ++F G ++ V L GAHT G H E Y G D D
Sbjct: 135 TQSHVREVFRRLGFNDQETVALIGAHTCGETHIE-----FSGYHGPWTHDKNGFDNSFFT 189
Query: 218 ALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYANLEGKLGLLASDQVLFLDPRTKSLVQE 277
L + D V V L D A KL +L SD L LDP + V+
Sbjct: 190 QLL--------DEDWVLNPKVEQMQLMDRA-----TTKLMMLPSDVCLLLDPSYRKYVEL 236
Query: 278 LGKDKQKFFQAFAVAMEKMGSIGVKRGRK 306
KD +F + FA A +K+ +G + K
Sbjct: 237 YAKDNDRFNKDFANAFKKLTELGTRNLHK 265
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 106/269 (39%), Gaps = 37/269 (13%)
Query: 45 GPATIRLFFH-----DCFV-EGCDGSILIATKPGSKELAEKDALGNKDLRVEGFESIRKA 98
GP+ IRL +H DCF +G S + KP E GNK G + RKA
Sbjct: 26 GPSLIRLAWHEAASYDCFKKDGSPNSASMRFKP------ECLYAGNK-----GLDIPRKA 74
Query: 99 KALVESKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANS 158
++ K P + S AD+ +AA + GGP GR D K LP +
Sbjct: 75 LETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSK 133
Query: 159 TIDQIIKIFNAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDP-AIDPRLLR 217
T + ++F G ++ V L GAHT G H E Y G D D
Sbjct: 134 TQSHVREVFRRLGFNDQETVALIGAHTCGECHIE-----FSGYHGPWTHDKNGFDNSFFT 188
Query: 218 ALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYANLEGKLGLLASDQVLFLDPRTKSLVQE 277
L + D V V L D A KL +L SD L LDP + V+
Sbjct: 189 QLL--------DEDWVLNPKVEQMQLMDRA-----TTKLMMLPSDVCLLLDPSYRKYVEL 235
Query: 278 LGKDKQKFFQAFAVAMEKMGSIGVKRGRK 306
KD +F + FA A +K+ +G + K
Sbjct: 236 YAKDNDRFNKDFANAFKKLTELGTRNLHK 264
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 106/269 (39%), Gaps = 37/269 (13%)
Query: 45 GPATIRLFFH-----DCFV-EGCDGSILIATKPGSKELAEKDALGNKDLRVEGFESIRKA 98
GP+ IRL +H DCF +G S + KP E GNK G + RKA
Sbjct: 27 GPSLIRLAWHEAASYDCFKKDGSPNSASMRFKP------ECLYAGNK-----GLDIPRKA 75
Query: 99 KALVESKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANS 158
++ K P + S AD+ +AA + GGP GR D K LP +
Sbjct: 76 LETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSK 134
Query: 159 TIDQIIKIFNAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDP-AIDPRLLR 217
T + ++F G ++ V L GAHT G H E Y G D D
Sbjct: 135 TQSHVREVFRRLGFNDQETVALIGAHTCGECHIE-----FSGYHGPWTHDKNGFDNSFFT 189
Query: 218 ALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYANLEGKLGLLASDQVLFLDPRTKSLVQE 277
L + D V V L D A KL +L SD L LDP + V+
Sbjct: 190 QLL--------DEDWVLNPKVEQMQLMDRA-----TTKLMMLPSDVCLLLDPSYRKYVEL 236
Query: 278 LGKDKQKFFQAFAVAMEKMGSIGVKRGRK 306
KD +F + FA A +K+ +G + K
Sbjct: 237 YAKDNDRFNKDFANAFKKLTELGTRNLHK 265
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 109 VVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFN 168
++S AD +A V + GGP GR D LP A D + +F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---RLPDATKGSDHLRDVFG 157
Query: 169 -AKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
A GLT +D+V LSG HTIG AH E
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKE----------------------------------- 182
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----EGKLGLLASDQVLFLDPRTKSLVQELGKDK 282
+ P+ + P +FD++Y+ L EG L L SD+ L DP + LV + D+
Sbjct: 183 -RSGFEGPW-TSNPLIFDNSYFTELLSGEKEGLL-QLPSDKALLSDPVFRPLVDKYAADE 239
Query: 283 QKFFQAFAVAMEKMGSIG 300
FF +A A +K+ +G
Sbjct: 240 DAFFADYAEAHQKLSELG 257
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 109 VVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFN 168
++S AD +A V + GGP GR D LP A D + +F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---RLPDATKGSDHLRDVFG 145
Query: 169 -AKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
A GLT +D+V LSG HTIG AH E
Sbjct: 146 KAMGLTDQDIVALSGGHTIGAAHKE----------------------------------- 170
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----EGKLGLLASDQVLFLDPRTKSLVQELGKDK 282
+ P+ + P +FD++Y+ L EG L L SD+ L DP + LV + D+
Sbjct: 171 -RSGFEGPW-TSNPLIFDNSYFTELLSGEKEGLL-QLPSDKALLSDPVFRPLVDKYAADE 227
Query: 283 QKFFQAFAVAMEKMGSIG 300
FF +A A +K+ +G
Sbjct: 228 DAFFADYAEAHQKLSELG 245
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 109 VVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFN 168
++S AD +A V + GGP GR D LP A D + +F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---RLPDATKGSDHLRDVFG 157
Query: 169 -AKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
A GLT +D+V LSG HTIG AH E
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKE----------------------------------- 182
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----EGKLGLLASDQVLFLDPRTKSLVQELGKDK 282
+ P+ + P +FD++Y+ L EG L L SD+ L DP + LV + D+
Sbjct: 183 -RSGFEGPW-TSNPLIFDNSYFTELLSGEKEGLL-QLPSDKALLSDPVFRPLVDKYAADE 239
Query: 283 QKFFQAFAVAMEKMGSIG 300
FF +A A +K+ +G
Sbjct: 240 DAFFADYAEAHQKLSELG 257
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 109 VVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFN 168
++S AD +A V + GGP GR D LP A D + +F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---RLPDATKGSDHLRDVFG 145
Query: 169 -AKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
A GLT +D+V LSG HTIG AH E
Sbjct: 146 KAMGLTDQDIVALSGGHTIGAAHKE----------------------------------- 170
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----EGKLGLLASDQVLFLDPRTKSLVQELGKDK 282
+ P+ + P +FD++Y+ L EG L L SD+ L DP + LV + D+
Sbjct: 171 -RSGFEGPW-TSNPLIFDNSYFTELLSGEKEGLL-QLPSDKALLSDPVFRPLVDKYAADE 227
Query: 283 QKFFQAFAVAMEKMGSIG 300
FF +A A +K+ +G
Sbjct: 228 DAFFADYAEAHQKLSELG 245
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 109 VVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFN 168
++S AD +A V + GGP GR D LP A D + +F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---RLPDATKGSDHLRDVFG 157
Query: 169 -AKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
A GLT +D+V LSG HTIG AH E
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKE----------------------------------- 182
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----EGKLGLLASDQVLFLDPRTKSLVQELGKDK 282
+ P+ + P +FD++Y+ L EG L L SD+ L DP + LV + D+
Sbjct: 183 -RSGFEGPW-TSNPLIFDNSYFTELLSGEKEGLL-QLPSDKALLSDPVFRPLVDKYAADE 239
Query: 283 QKFFQAFAVAMEKMGSIG 300
FF +A A +K+ +G
Sbjct: 240 DAFFADYAEAHQKLSELG 257
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 109 VVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFN 168
++S AD +A V + GGP GR D LP A D + +F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---RLPDATKGSDHLRDVFG 145
Query: 169 -AKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
A GLT +D+V LSG HTIG AH E
Sbjct: 146 KAMGLTDQDIVALSGGHTIGAAHKE----------------------------------- 170
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----EGKLGLLASDQVLFLDPRTKSLVQELGKDK 282
+ P+ + P +FD++Y+ L EG L L SD+ L DP + LV + D+
Sbjct: 171 -RSGFEGPW-TSNPLIFDNSYFTELLSGEKEGLL-QLPSDKALLSDPVFRPLVDKYAADE 227
Query: 283 QKFFQAFAVAMEKMGSIG 300
FF +A A +K+ +G
Sbjct: 228 DAFFADYAEAHQKLSELG 245
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 109 VVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFN 168
++S AD +A V + GGP GR D LP A D + +F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---RLPDATKGSDHLRDVFG 157
Query: 169 -AKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
A GLT +D+V LSG HTIG AH E
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKE----------------------------------- 182
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----EGKLGLLASDQVLFLDPRTKSLVQELGKDK 282
+ P+ + P +FD++Y+ L EG L L SD+ L DP + LV + D+
Sbjct: 183 -RSGFEGPW-TSNPLIFDNSYFTELLSGEKEGLL-QLPSDKALLSDPVFRPLVDKYAADE 239
Query: 283 QKFFQAFAVAMEKMGSIG 300
FF +A A +K+ +G
Sbjct: 240 DAFFADYAEAHQKLSELG 257
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 109 VVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFN 168
++S AD +A V + GGP GR D LP A D + +F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---RLPDATKGSDHLRDVFG 157
Query: 169 -AKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
A GLT +D+V LSG HTIG AH E
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKE----------------------------------- 182
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----EGKLGLLASDQVLFLDPRTKSLVQELGKDK 282
+ P+ + P +FD++Y+ L EG L L SD+ L DP + LV + D+
Sbjct: 183 -RSGFEGPW-TSNPLIFDNSYFTELLSGEKEGLL-QLPSDKALLSDPVFRPLVDKYAADE 239
Query: 283 QKFFQAFAVAMEKMGSIG 300
FF +A A +K+ +G
Sbjct: 240 DAFFADYAEAHQKLSELG 257
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 109 VVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFN 168
++S AD +A V + GGP GR D LP A D + +F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---RLPDATKGSDHLRDVFG 145
Query: 169 -AKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
A GLT +D+V LSG HTIG AH E
Sbjct: 146 KAMGLTDQDIVALSGGHTIGAAHKE----------------------------------- 170
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----EGKLGLLASDQVLFLDPRTKSLVQELGKDK 282
+ P+ + P +FD++Y+ L EG L L SD+ L DP + LV + D+
Sbjct: 171 -RSGFEGPW-TSNPLIFDNSYFTELLSGEKEGLL-QLPSDKALLSDPVFRPLVDKYAADE 227
Query: 283 QKFFQAFAVAMEKMGSIG 300
FF +A A +K+ +G
Sbjct: 228 DAFFADYAEAHQKLSELG 245
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 109 VVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFN 168
++S AD +A V + GGP GR D LP A D + +F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---RLPDATKGSDHLRDVFG 157
Query: 169 -AKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
A GLT +D+V LSG HTIG AH E
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKE----------------------------------- 182
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----EGKLGLLASDQVLFLDPRTKSLVQELGKDK 282
+ P+ + P +FD++Y+ L EG L L SD+ L DP + LV + D+
Sbjct: 183 -RSGFEGPW-TSNPLIFDNSYFTELLSGEKEGLL-QLPSDKALLSDPVFRPLVDKYAADE 239
Query: 283 QKFFQAFAVAMEKMGSIG 300
FF +A A +K+ +G
Sbjct: 240 DAFFADYAEAHQKLSELG 257
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 109 VVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFN 168
++S AD +A V + GGP GR D LP A D + +F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG---RLPDATKGSDHLRDVFG 157
Query: 169 -AKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
A GLT +D+V LSG HTIG AH E
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKE----------------------------------- 182
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----EGKLGLLASDQVLFLDPRTKSLVQELGKDK 282
+ P+ + P +FD++Y+ L EG L L SD+ L DP + LV + D+
Sbjct: 183 -ASGFEGPW-TSNPLIFDNSYFTELLSGEKEGLL-QLPSDKALLSDPVFRPLVDKYAADE 239
Query: 283 QKFFQAFAVAMEKMGSIG 300
FF +A A +K+ +G
Sbjct: 240 DAFFADYAEAHQKLSELG 257
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 31/207 (14%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRAN--STIDQIIK 165
V+ AD+ +A+ + AGGP +K GR D ++ + P LP A S +
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVD--VTEPEQCPEEGRLPDAGPPSPAQHLRD 144
Query: 166 IFNAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPH 225
+F GL +++V LSGAHT+G + D G +P+ P
Sbjct: 145 VFYRMGLNDKEIVALSGAHTLGRSRP--------DRSGWGKPE--------TKYTKDGPG 188
Query: 226 FGGNTDIVAPFDVTTPFLFDHAYYANLEGK----LGLLASDQVLFLDPRTKSLVQELGKD 281
G A + FD++Y+ +++ + L +L +D LF DP K ++ D
Sbjct: 189 APGGQSWTAQW-----LKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAAD 243
Query: 282 KQKFFQAFAVAMEKMGSIGVKRGRKHG 308
+ FF+ +A A K+ ++G K G G
Sbjct: 244 PEAFFKDYAEAHAKLSNLGAKFGPAEG 270
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 77/197 (39%), Gaps = 45/197 (22%)
Query: 109 VVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFN 168
+VS AD +A V + GGP GR D LP A D + +F
Sbjct: 89 IVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEG---RLPDATKGSDHLRDVFG 145
Query: 169 -AKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
A GL+ +D+V LSG HTIG AH E
Sbjct: 146 KAMGLSDQDIVALSGGHTIGAAHKE----------------------------------- 170
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL----EGKLGLLASDQVLFLDPRTKSLVQELGKDKQ 283
+ P+ + P +FD++Y+ L + L L SD+ L D + LV++ D+
Sbjct: 171 -RSGFEGPW-TSNPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADED 228
Query: 284 KFFQAFAVAMEKMGSIG 300
FF +A A K+ +G
Sbjct: 229 VFFADYAEAHLKLSELG 245
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 61/213 (28%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAHT+G H +
Sbjct: 159 QRLNMNDREVVALMGAHTLGKTHLK----------------------------------- 183
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----------------EGKLG--LLASDQVLFLD 268
N+ P+D T +FD+++Y NL + K G +L +D L D
Sbjct: 184 -NSGYEGPWDATNN-VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 241
Query: 269 PRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGV 301
P+ S+V+E D+ KFF+ F+ A EK+ G+
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 61/213 (28%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAHT+G H +
Sbjct: 159 QRLNMNDREVVALMGAHTLGKTHLK----------------------------------- 183
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----------------EGKLG--LLASDQVLFLD 268
N+ P+ P +FD+++Y NL + K G +L +D L D
Sbjct: 184 -NSGYEGPW-TANPNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 241
Query: 269 PRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGV 301
P+ S+V+E D+ KFF+ F+ A EK+ G+
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 82/213 (38%), Gaps = 61/213 (28%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V LSGAHT+G H ++ G + P +
Sbjct: 159 QRLNMNDREVVALSGAHTLGKTHLKN--------SGYEGP------------------WT 192
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----------------EGKLGLLA--SDQVLFLD 268
N ++ FD+++Y NL + K G L +D L D
Sbjct: 193 ANNNV-----------FDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQD 241
Query: 269 PRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGV 301
P+ S+V+E D+ KFF+ F+ A EK+ G+
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 82/213 (38%), Gaps = 61/213 (28%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAHT+G H ++ G + P +
Sbjct: 159 QRLNMNDREVVALMGAHTLGKTHLKN--------SGYEGP------------------WT 192
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----------------EGKLG--LLASDQVLFLD 268
N ++ FD+++Y NL + K G +L +D L D
Sbjct: 193 ANNNV-----------FDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 241
Query: 269 PRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGV 301
P+ S+V+E D+ KFF+ F+ A EK+ G+
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 81/213 (38%), Gaps = 61/213 (28%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAHT+G H ++ G + P +
Sbjct: 159 QRLNMNDREVVALMGAHTLGKTHLKN--------SGYEGP------------------WT 192
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----------------EGKLGLLA--SDQVLFLD 268
N ++ FD+++Y NL + K G L +D L D
Sbjct: 193 ANNNV-----------FDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQD 241
Query: 269 PRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGV 301
P+ S+V+E D+ KFF+ F+ A EK+ G+
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNCFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 207 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 207 --------LNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 104 ISSGDLFSLGGVTAVQEWQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 209 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 157
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 158 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 205
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 206 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 257
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 258 FKDFSKAFEKLLENGI 273
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H + G + P A + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKR--------SGYEGPWGAANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 209 --------LNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 207 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 209 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 207 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 207 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H + G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKR--------SGYEGPWGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 207 --------LNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 207 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLEDGI 274
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 78/213 (36%), Gaps = 61/213 (28%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 95 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 151
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H + G + P FG
Sbjct: 152 QRLNMNDREVVALMGAHALGKTHLKR--------SGYEGP------------------FG 185
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----------------EGKLG--LLASDQVLFLD 268
++ F + +Y NL + K G +L +D L D
Sbjct: 186 AANNV-----------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 234
Query: 269 PRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGV 301
P+ S+V+E D+ KFF+ F+ A EK+ G+
Sbjct: 235 PKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 267
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H + G + P A + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKR--------SGYEGPWGAANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 209 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 155
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H + G + P A + +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKR--------SGYEGPWGAANNVFTNEFYLNL---- 203
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 204 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 255
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 256 FKDFSKAFEKLLENGI 271
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 78/213 (36%), Gaps = 61/213 (28%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 157
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H + G + P FG
Sbjct: 158 QRLNMNDREVVALMGAHALGKTHLKR--------SGYEGP------------------FG 191
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----------------EGKLG--LLASDQVLFLD 268
++ F + +Y NL + K G +L +D L D
Sbjct: 192 AANNV-----------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 240
Query: 269 PRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGV 301
P+ S+V+E D+ +FF+ F+ A EK+ G+
Sbjct: 241 PKYLSIVKEYANDQDRFFKDFSKAFEKLLENGI 273
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPQGAANNVFTNEFYLNL---- 203
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 204 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 255
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 256 FKDFSKAFEKLLEDGI 271
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPQGAANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 209 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 156 QRLNMNDREVVALKGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 203
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 204 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 255
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 256 FKDFSKAFEKLLENGI 271
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPGGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 207 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPGGAANNVFTNEFYLNL---- 203
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 204 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 255
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 256 FKDFSKAFEKLLEDGI 271
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 156
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 157 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPGGAANNVFTNEFYLNL---- 204
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 205 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 256
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 257 FKDFSKAFEKLLEDGI 272
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPGGAANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 209 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 25/194 (12%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ Y G + + L L
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKN-----SGYEGGGANNVFTNEFYLNLLNEDW-KLE 209
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLGLLASDQVLFLDPRTKSLVQELGKDKQKFFQ 287
N +D + ++ +L +D L DP+ S+V+E D+ KFF+
Sbjct: 210 KNDANNEQWDSKSGYM--------------MLPTDYSLIQDPKYLSIVKEYANDQDKFFK 255
Query: 288 AFAVAMEKMGSIGV 301
F+ A EK+ G+
Sbjct: 256 DFSKAFEKLLENGI 269
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 25/194 (12%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 156
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ Y G + + L L
Sbjct: 157 QRLNMNDREVVALMGAHALGKTHLKN-----SGYEGGGANNVFTNEFYLNLLNEDW-KLE 210
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLGLLASDQVLFLDPRTKSLVQELGKDKQKFFQ 287
N +D + ++ +L +D L DP+ S+V+E D+ KFF+
Sbjct: 211 KNDANNEQWDSKSGYM--------------MLPTDYSLIQDPKYLSIVKEYANDQDKFFK 256
Query: 288 AFAVAMEKMGSIGV 301
F+ A EK+ G+
Sbjct: 257 DFSKAFEKLLENGI 270
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPGGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 207 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLEDGI 274
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 25/194 (12%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 161
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ Y G + + L L
Sbjct: 162 QRLNMNDREVVALMGAHALGKTHLKN-----SGYEGGGANNVFTNEFYLNLLNEDW-KLE 215
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLGLLASDQVLFLDPRTKSLVQELGKDKQKFFQ 287
N +D + ++ +L +D L DP+ S+V+E D+ KFF+
Sbjct: 216 KNDANNEQWDSKSGYM--------------MLPTDYSLIQDPKYLSIVKEYANDQDKFFK 261
Query: 288 AFAVAMEKMGSIGV 301
F+ A EK+ G+
Sbjct: 262 DFSKAFEKLLENGI 275
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 203
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 204 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 255
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 256 FKDFSKAFEKLLEDGI 271
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 207 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 207 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGP------------WGAANNVF 195
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
N + + + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 196 TNEKYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 255
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 256 FKDFSKAFEKLLENGI 271
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPYGAANNVFTNEFYLNL---- 203
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 204 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 255
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 256 FKDFSKAFEKLLEDGI 271
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 203
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 204 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 255
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 256 FKDFSKAFEKLLENGI 271
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 209 --------LNEDWKLEKNDANNEQWDSKSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 161
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 162 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 209
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 210 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 261
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 262 FKDFSKAFEKLLENGI 277
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 209 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 203
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 204 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 255
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 256 FKDFSKAFEKLLEDGI 271
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGP------------WGAANNVF 198
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
N + + + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 199 TNEGYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 209 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 209 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 75/213 (35%), Gaps = 61/213 (28%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLK----------------------------------- 180
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----------------EGKLG--LLASDQVLFLD 268
N+ P+ +F + YY NL + K G +L +D L D
Sbjct: 181 -NSGYEGPWGAANN-VFTNEYYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 238
Query: 269 PRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGV 301
P+ S+V+E D+ KFF+ F+ A EK+ G+
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 271
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 209 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 209 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 78/213 (36%), Gaps = 61/213 (28%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P FG
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGP------------------FG 194
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANL-----------------EGKLG--LLASDQVLFLD 268
++ F + +Y NL + K G +L +D L D
Sbjct: 195 AANNV-----------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 243
Query: 269 PRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGV 301
P+ S+V+E D+ KFF+ F+ A EK+ G+
Sbjct: 244 PKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H + G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKR--------SGYEGPWGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L + L DP+ S+V+E D+ KF
Sbjct: 207 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTXYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 203
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLGL--LASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G L +D L DP+ S+V+E D+ KF
Sbjct: 204 --------LNEDWKLEKNDANNEQWDSKSGYMHLPTDYSLIQDPKYLSIVKEYANDQDKF 255
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 256 FKDFSKAFEKLLENGI 271
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGCANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 209 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPGGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L ++ L DP+ S+V+E D+ KF
Sbjct: 207 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 161
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 162 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 209
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L ++ L DP+ S+V+E D+ KF
Sbjct: 210 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTEYSLIQDPKYLSIVKEYANDQDKF 261
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 262 FKDFSKAFEKLLENGI 277
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDMDKDAGYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 207 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 208
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L ++ L DP+ S+V+E D+ KF
Sbjct: 209 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKF 260
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 261 FKDFSKAFEKLLENGI 276
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDYDKDAGYVRTFF 158
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 206
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 207 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 259 FKDFSKAFEKLLENGI 274
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G ++ G + P A + +
Sbjct: 156 QRLNMNDREVVALMGAHALGKTELKN--------SGYEGPWGAANNVFTNEFYLNL---- 203
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L +D L DP+ S+V+E D+ KF
Sbjct: 204 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 255
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 256 FKDFSKAFEKLLENGI 271
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 258 LLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGV 301
+L +D L DP+ S+V+E D+ KFF+ F+ A EK+ G+
Sbjct: 229 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 272
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 258 LLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGV 301
+L +D L DP+ S+V+E D+ KFF+ F+ A EK+ G+
Sbjct: 228 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 271
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 258 LLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGV 301
+L +D L DP+ S+V+E D+ KFF+ F+ A EK+ G+
Sbjct: 229 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 272
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 27/196 (13%)
Query: 110 VSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFN--LPRANSTIDQIIKIF 167
+S D+ ++ V GP + GR D + P N LP A+ + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD---TPEDTTPDNGRLPDADKDAGYVRTFF 161
Query: 168 NAKGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFG 227
+ ++V L GAH +G H ++ G + P A + +
Sbjct: 162 QRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNL---- 209
Query: 228 GNTDIVAPFDVTTPFLFDHAYYANLEGKLG--LLASDQVLFLDPRTKSLVQELGKDKQKF 285
+ + A + K G +L + L DP+ S+V+E D+ KF
Sbjct: 210 --------LNEDWKLEKNDANNEQWDSKSGYMMLPTAYSLIQDPKYLSIVKEYANDQDKF 261
Query: 286 FQAFAVAMEKMGSIGV 301
F+ F+ A EK+ G+
Sbjct: 262 FKDFSKAFEKLLENGI 277
>pdb|3AAX|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
pdb|3AAX|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
Length = 277
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 141 GKISMASRVPFNLPRANSTID--QIIKIFNAKGLTIEDMVVLSGAHTIGFAHCEHFVSRL 198
G I + R P +D Q K+ + +G+ ED V+L G + FA ++ +L
Sbjct: 41 GAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKL 100
Query: 199 YDYRGTK 205
Y + K
Sbjct: 101 YGHEKVK 107
>pdb|3AAY|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
pdb|3AAY|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
Length = 277
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 141 GKISMASRVPFNLPRANSTID--QIIKIFNAKGLTIEDMVVLSGAHTIGFAHCEHFVSRL 198
G I + R P +D Q K+ + +G+ ED V+L G + FA ++ +L
Sbjct: 41 GAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKL 100
Query: 199 YDYRGTK 205
Y + K
Sbjct: 101 YGHEKVK 107
>pdb|3HWI|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
pdb|3HWI|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
Length = 298
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 141 GKISMASRVPFNLPRANSTID--QIIKIFNAKGLTIEDMVVLSGAHTIGFAHCEHFVSRL 198
G I + R P +D Q K+ + +G+ ED V+L G + FA ++ +L
Sbjct: 62 GAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKL 121
Query: 199 YDYRGTK 205
Y + K
Sbjct: 122 YGHEKVK 128
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 14 LSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHD 55
LSVD A++C ++ Q G+VT + PV G T+ F D
Sbjct: 77 LSVDNAAEACEKIRQNGGNVTREA---GPVKGGTTVIAFVED 115
>pdb|3BQ3|A Chain A, Crystal Structure Of S. Cerevisiae Dcn1
Length = 270
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 160 IDQIIKIFNAKGLTIEDMVVLSGAHTIGFAHCEHFVSR 197
ID ++K G +ED+ L AH +G+ E + R
Sbjct: 91 IDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKR 128
>pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain
Oxidoreductase (Sdr) In Complex With Nadp
pdb|3RKR|B Chain B, Crystal Structure Of A Metagenomic Short-Chain
Oxidoreductase (Sdr) In Complex With Nadp
pdb|3RKR|C Chain C, Crystal Structure Of A Metagenomic Short-Chain
Oxidoreductase (Sdr) In Complex With Nadp
pdb|3RKR|D Chain D, Crystal Structure Of A Metagenomic Short-Chain
Oxidoreductase (Sdr) In Complex With Nadp
Length = 262
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 128 GGPYYQVKKGRWDGKISMASRVPFNLPRA 156
GGP + +K WD I++ + P+ L RA
Sbjct: 120 GGPLHTMKPAEWDALIAVNLKAPYLLLRA 148
>pdb|2IS9|A Chain A, Structure Of Yeast Dcn-1
Length = 204
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 160 IDQIIKIFNAKGLTIEDMVVLSGAHTIGFAHCEHFVSR 197
ID ++K G +ED+ L AH +G+ E + R
Sbjct: 25 IDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKR 62
>pdb|3O2P|A Chain A, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
pdb|3O6B|A Chain A, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|C Chain C, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|G Chain G, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|I Chain I, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3TDI|B Chain B, Yeast Cul1whb-Dcn1p Acetylated Ubc12n Complex
pdb|3TDI|A Chain A, Yeast Cul1whb-Dcn1p Acetylated Ubc12n Complex
Length = 202
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 160 IDQIIKIFNAKGLTIEDMVVLSGAHTIGFAHCEHFVSR 197
ID ++K G +ED+ L AH +G+ E + R
Sbjct: 23 IDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKR 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,437,776
Number of Sequences: 62578
Number of extensions: 382373
Number of successful extensions: 994
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 180
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)