Query 036989
Match_columns 318
No_of_seqs 124 out of 1418
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 5E-102 1E-106 733.3 23.8 297 11-317 22-323 (324)
2 cd00693 secretory_peroxidase H 100.0 8.3E-99 2E-103 709.8 25.6 298 13-317 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1.3E-70 2.9E-75 502.0 9.3 229 30-281 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1E-68 2.2E-73 499.9 20.6 231 29-315 16-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 2E-65 4.4E-70 472.8 18.8 232 25-302 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 6.5E-65 1.4E-69 467.8 18.9 231 17-302 4-248 (250)
7 PLN02879 L-ascorbate peroxidas 100.0 2.1E-63 4.7E-68 457.0 19.8 220 28-302 18-248 (251)
8 cd00692 ligninase Ligninase an 100.0 3.5E-63 7.7E-68 470.3 21.0 236 26-318 16-287 (328)
9 cd00314 plant_peroxidase_like 100.0 1.9E-58 4.1E-63 427.9 17.3 224 29-298 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 6.7E-58 1.5E-62 440.6 19.3 261 27-308 44-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 5.1E-55 1.1E-59 444.7 19.8 267 19-305 45-406 (716)
12 PRK15061 catalase/hydroperoxid 100.0 5.4E-52 1.2E-56 420.4 20.1 268 19-306 47-413 (726)
13 cd08201 plant_peroxidase_like_ 100.0 2.3E-50 4.9E-55 370.4 10.7 232 14-298 14-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 7.6E-41 1.6E-45 310.9 16.5 220 32-300 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.5E-35 3.2E-40 302.4 15.9 221 29-301 429-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 4.7E-35 1E-39 297.2 16.6 221 32-301 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.7E-32 3.6E-37 267.3 17.1 254 29-300 71-416 (730)
18 COG0376 KatG Catalase (peroxid 99.5 1.2E-13 2.7E-18 135.9 11.8 216 32-300 452-725 (730)
19 PF11895 DUF3415: Domain of un 77.1 1.6 3.5E-05 33.5 1.8 29 284-317 2-30 (80)
20 PTZ00411 transaldolase-like pr 74.9 35 0.00077 33.2 10.8 66 110-175 161-231 (333)
21 PRK05269 transaldolase B; Prov 57.4 95 0.0021 30.0 9.9 69 110-178 151-224 (318)
22 TIGR00874 talAB transaldolase. 34.6 2.5E+02 0.0054 27.2 8.7 148 116-287 155-311 (317)
23 PRK12309 transaldolase/EF-hand 32.9 5.1E+02 0.011 25.8 10.9 65 110-175 155-225 (391)
24 cd00957 Transaldolase_TalAB Tr 31.0 2.1E+02 0.0047 27.6 7.6 70 109-179 148-223 (313)
25 PRK12346 transaldolase A; Prov 29.3 3.7E+02 0.008 26.0 8.9 67 109-176 149-221 (316)
26 KOG0400 40S ribosomal protein 25.0 48 0.001 28.0 1.8 33 158-190 31-64 (151)
27 PF08782 c-SKI_SMAD_bind: c-SK 21.7 41 0.00089 26.8 0.7 14 52-66 4-17 (96)
28 PF04225 OapA: Opacity-associa 20.6 37 0.00081 26.2 0.3 25 160-184 10-34 (85)
29 PLN00017 photosystem I reactio 20.6 59 0.0013 25.3 1.3 19 278-296 38-56 (90)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=4.6e-102 Score=733.32 Aligned_cols=297 Identities=42% Similarity=0.718 Sum_probs=281.5
Q ss_pred cCCCCccccccCCccHHHHHHHHHHHHHHhCCCCccchhhhhcccccccCCCceEeccCCCCCCchhhhcccCCCCCccc
Q 036989 11 RRQLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPGSKELAEKDALGNKDLRVE 90 (318)
Q Consensus 11 ~~~l~~~~y~~~Cp~~e~~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDgSill~~~~~~~~~~E~~~~~N~~L~~~ 90 (318)
.++|+++||++|||++|+||++.|++.+.++|+++|++|||+||||||+||||||||+++. .|+++++|.+| +
T Consensus 22 ~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~-----~Ek~a~~N~~l--~ 94 (324)
T PLN03030 22 GQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSN-----TEKTALPNLLL--R 94 (324)
T ss_pred hccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCc-----ccccCCCCcCc--c
Confidence 3679999999999999999999999999999999999999999999999999999999642 79999999999 8
Q ss_pred cHHHHHHHHHHHHhcCCCccCHHHHHHHhhHHHHHhcCCCccccccCccCCCCcccCCCCCCCCCCCCCHHHHHHHHHHC
Q 036989 91 GFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAK 170 (318)
Q Consensus 91 ~~~~i~~iK~~le~~cp~~VScADilalAa~~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~ 170 (318)
||++|+.||+.||++||++|||||||||||||||+++|||.|+|++||+|+.+|...++. +||.|+.++++|++.|+++
T Consensus 95 Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~ 173 (324)
T PLN03030 95 GYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAK 173 (324)
T ss_pred hHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999998777664 8999999999999999999
Q ss_pred CCCccccccccccceeccccccccccccccCCCCC-CCCCCCCHHHHHHHHhhCCCCCCCCCcccCCCCCCCcccchhHH
Q 036989 171 GLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTK-QPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYY 249 (318)
Q Consensus 171 Gl~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~-~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~~D~~tp~~fDn~Yy 249 (318)
||+.+|||+||||||||++||.+|.+|||||.|++ .+||+||+.|++.|+..|| ..++....+++|+.||.+|||+||
T Consensus 174 Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp-~~~~~~~~~~lD~~Tp~~FDn~Yy 252 (324)
T PLN03030 174 GLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCP-QNGDGSRRIALDTGSSNRFDASFF 252 (324)
T ss_pred CCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCC-CCCCCCccccCCCCCCcccccHHH
Confidence 99999999999999999999999999999999875 5899999999999999999 333333467899999999999999
Q ss_pred HHhhccccccchhhhhcCChhhHHHHHHHhhhH----HHHHHHHHHHHHHHHcCCccCCCCCccccccCCCC
Q 036989 250 ANLEGKLGLLASDQVLFLDPRTKSLVQELGKDK----QKFFQAFAVAMEKMGSIGVKRGRKHGEKRKDCSMH 317 (318)
Q Consensus 250 ~~l~~~~glL~sD~~L~~d~~t~~~v~~yA~d~----~~F~~~Fa~Am~Km~~lgv~tg~~~GeiR~~C~~~ 317 (318)
++|+.++|+|+|||+|+.|++|+++|++||.|+ ++|+++|++||+||++|+|+||++ ||||++|+.|
T Consensus 253 ~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~-GEIRk~C~~v 323 (324)
T PLN03030 253 SNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTN-GEIRKVCSAI 323 (324)
T ss_pred HHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCC-Cceecccccc
Confidence 999999999999999999999999999999875 599999999999999999999999 9999999986
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=8.3e-99 Score=709.77 Aligned_cols=298 Identities=51% Similarity=0.888 Sum_probs=286.1
Q ss_pred CCCccccccCCccHHHHHHHHHHHHHHhCCCCccchhhhhcccccccCCCceEeccCCCCCCchhhhcccCCCCCccccH
Q 036989 13 QLSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPGSKELAEKDALGNKDLRVEGF 92 (318)
Q Consensus 13 ~l~~~~y~~~Cp~~e~~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDgSill~~~~~~~~~~E~~~~~N~~L~~~~~ 92 (318)
||+++||+++||++|+||++.|++.+..+++++|++|||+||||||+||||||||+++.+.. .|+++++|.+| +||
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~--~E~~~~~N~~l--~g~ 76 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNT--SEKDAPPNLSL--RGF 76 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCc--hhccCCCCCCc--chh
Confidence 69999999999999999999999999999999999999999999999999999999876556 89999999999 899
Q ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHhhHHHHHhcCCCccccccCccCCCCcccCCCCCCCCCCCCCHHHHHHHHHHCCC
Q 036989 93 ESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGL 172 (318)
Q Consensus 93 ~~i~~iK~~le~~cp~~VScADilalAa~~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl 172 (318)
++|+.||+.+|+.||++||||||||||+|+||+++|||.|+|++||+|+.++.+..+ ..||.|+.+++++++.|+++||
T Consensus 77 ~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~ 155 (298)
T cd00693 77 DVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGL 155 (298)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999998876655 7899999999999999999999
Q ss_pred CccccccccccceeccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCcccCCCCCCCcccchhHHHHh
Q 036989 173 TIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYANL 252 (318)
Q Consensus 173 ~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~~D~~tp~~fDn~Yy~~l 252 (318)
+++|||||+||||||++||..|.+|||||+|++.+||+|++.|+..|++.||+ .++....+++|..||.+|||+||+++
T Consensus 156 ~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~-~~~~~~~~~lD~~Tp~~FDn~Yy~~l 234 (298)
T cd00693 156 TVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPA-GGDDDTLVPLDPGTPNTFDNSYYKNL 234 (298)
T ss_pred CHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCC-CCCCCccccCCCCCCCccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999994 33455678999999999999999999
Q ss_pred hccccccchhhhhcCChhhHHHHHHHhhhHHHHHHHHHHHHHHHHcCCccCCCCCccccccCCCC
Q 036989 253 EGKLGLLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHGEKRKDCSMH 317 (318)
Q Consensus 253 ~~~~glL~sD~~L~~d~~t~~~v~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~~GeiR~~C~~~ 317 (318)
+.++|+|+||++|+.|++|+++|++||.|++.|+++|++||+||++|||+||.+ ||||++|++|
T Consensus 235 ~~~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~-GeiR~~C~~~ 298 (298)
T cd00693 235 LAGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQ-GEIRKNCRVV 298 (298)
T ss_pred HhcccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCC-CccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999 9999999976
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.3e-70 Score=502.00 Aligned_cols=229 Identities=52% Similarity=0.887 Sum_probs=209.0
Q ss_pred HHHHHHHHHHhCCCCccchhhhhcccccc-cCCCceEeccCCCCCCchhhhcccCCCCCccccHHHHHHHHHHHHhcCCC
Q 036989 30 VGSVTSQQFKEAPVSGPATIRLFFHDCFV-EGCDGSILIATKPGSKELAEKDALGNKDLRVEGFESIRKAKALVESKCPG 108 (318)
Q Consensus 30 Vr~~v~~~~~~~~~~a~~~lRl~FHDc~v-~GcDgSill~~~~~~~~~~E~~~~~N~~L~~~~~~~i~~iK~~le~~cp~ 108 (318)
||+.|++.+..+++++|+||||+|||||+ +|||||||+. . .|+++++|.||+ +++++|+.||+++|++||+
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~--~e~~~~~N~gl~-~~~~~i~~ik~~~~~~cp~ 72 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----S--AEKDAPPNRGLR-DGFDVIDPIKAKLEAACPG 72 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----T--TGGGSGGGTTHH-HHHHHHHHHHHHHCHHSTT
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----c--cccccccccCcc-eeeechhhHHhhhcccccC
Confidence 89999999999999999999999999999 9999999983 2 899999999994 5999999999999999999
Q ss_pred ccCHHHHHHHhhHHHHHhcCCCccccccCccCCCCcccCCCCCCCCCCCCCHHHHHHHHHHCCCCccccccccccceecc
Q 036989 109 VVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLTIEDMVVLSGAHTIGF 188 (318)
Q Consensus 109 ~VScADilalAa~~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHtiG~ 188 (318)
+|||||||+||+++||+.+|||.|+|++||+|+.++...++ .+||.|..++++|++.|+++|||++|||||+||||||+
T Consensus 73 ~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~ 151 (230)
T PF00141_consen 73 VVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGR 151 (230)
T ss_dssp TS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTE
T ss_pred CCCHHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceeccccccc
Confidence 99999999999999999999999999999999999987666 67999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCcccCCCCCCCcccchhHHHHhhccccccchhhhhcCC
Q 036989 189 AHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYANLEGKLGLLASDQVLFLD 268 (318)
Q Consensus 189 ~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~glL~sD~~L~~d 268 (318)
+||.+|. ||| | .+||+|++.|+.. .|+ .++ + ..+++| ||.+|||+||++++.++|+|+||++|+.|
T Consensus 152 ~~c~~f~-rl~-~----~~dp~~d~~~~~~---~C~-~~~-~-~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d 217 (230)
T PF00141_consen 152 AHCSSFS-RLY-F----PPDPTMDPGYAGQ---NCN-SGG-D-NGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLND 217 (230)
T ss_dssp ESGGCTG-GTS-C----SSGTTSTHHHHHH---SSS-TSG-C-TCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHS
T ss_pred ceecccc-ccc-c----cccccccccccee---ccC-CCc-c-cccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcC
Confidence 9999999 999 5 6799999999988 994 322 2 267888 99999999999999999999999999999
Q ss_pred hhhHHHHHHHhhh
Q 036989 269 PRTKSLVQELGKD 281 (318)
Q Consensus 269 ~~t~~~v~~yA~d 281 (318)
++|+++|++||+|
T Consensus 218 ~~t~~~V~~yA~d 230 (230)
T PF00141_consen 218 PETRPIVERYAQD 230 (230)
T ss_dssp TTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1e-68 Score=499.88 Aligned_cols=231 Identities=29% Similarity=0.431 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhccccc-------ccCCCceEeccCCCCCCchhhhcccCCCCCccccHHHHHHHHHH
Q 036989 29 LVGSVTSQQFKEAPVSGPATIRLFFHDCF-------VEGCDGSILIATKPGSKELAEKDALGNKDLRVEGFESIRKAKAL 101 (318)
Q Consensus 29 ~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~-------v~GcDgSill~~~~~~~~~~E~~~~~N~~L~~~~~~~i~~iK~~ 101 (318)
.+++.| ..+.++|.++|.+|||+||||+ ++||||||+++ .|+++++|.||+ +++++|+.||++
T Consensus 16 ~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~--------~E~~~~~N~gL~-~g~~vid~iK~~ 85 (289)
T PLN02608 16 KARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE--------EEYSHGANNGLK-IAIDLCEPVKAK 85 (289)
T ss_pred HHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc--------cccCCccccchH-HHHHHHHHHHHH
Confidence 455556 4467889999999999999999 99999999984 799999999995 699999999997
Q ss_pred HHhcCCCccCHHHHHHHhhHHHHHhcCCCccccccCccCCCCcccCCCCCCCCCCCCCHHHHHHHHHHCCCCcccccccc
Q 036989 102 VESKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLTIEDMVVLS 181 (318)
Q Consensus 102 le~~cp~~VScADilalAa~~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs 181 (318)
+ ++|||||||+||||+||+++|||.|+|++||+|+.+++ ++.+||+|+.+++++++.|+++||+++|||||+
T Consensus 86 ~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLs 157 (289)
T PLN02608 86 H-----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALS 157 (289)
T ss_pred c-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhc
Confidence 6 48999999999999999999999999999999999875 456899999999999999999999999999999
Q ss_pred ccceeccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCcccCCCCCCCcccchhHHHHhhcc--ccc-
Q 036989 182 GAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYANLEGK--LGL- 258 (318)
Q Consensus 182 GaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~--~gl- 258 (318)
||||||++||. |+ +|.|. + ..||.+|||+||++++.+ +|+
T Consensus 158 GAHTiG~ahc~----r~-g~~g~-------------------------------~-~~Tp~~FDN~Yy~~ll~~~~~gll 200 (289)
T PLN02608 158 GGHTLGRAHPE----RS-GFDGP-------------------------------W-TKEPLKFDNSYFVELLKGESEGLL 200 (289)
T ss_pred ccccccccccc----CC-CCCCC-------------------------------C-CCCCCccChHHHHHHHcCCcCCcc
Confidence 99999999995 54 44331 1 269999999999999998 788
Q ss_pred -cchhhhhcCChhhHHHHHHHhhhHHHHHHHHHHHHHHHHcCCccCCCCCccccccCC
Q 036989 259 -LASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHGEKRKDCS 315 (318)
Q Consensus 259 -L~sD~~L~~d~~t~~~v~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~~GeiR~~C~ 315 (318)
|+||++|+.|++|+++|++||.|++.|+++|+.||+||++|||+||++ ||+.+.-+
T Consensus 201 ~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~-Ge~~~~~~ 257 (289)
T PLN02608 201 KLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSS-AFKKKSTS 257 (289)
T ss_pred ccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCC-CcccccCc
Confidence 799999999999999999999999999999999999999999999999 99987643
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=2e-65 Score=472.75 Aligned_cols=232 Identities=26% Similarity=0.379 Sum_probs=209.3
Q ss_pred cHHHHHHHHHHHHHHhCCCCccchhhhhcccccccCCCceEeccCCCCC-CchhhhcccCCCCCccccHHHHHHHHHHHH
Q 036989 25 QLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDGSILIATKPGS-KELAEKDALGNKDLRVEGFESIRKAKALVE 103 (318)
Q Consensus 25 ~~e~~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDgSill~~~~~~-~~~~E~~~~~N~~L~~~~~~~i~~iK~~le 103 (318)
..++||++.|++.+. +++++|++|||+|||||+ ||+|+++++..+. ...+|+++++|.+|. +++++|+.||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~-~~~~~i~~iK~~~- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLD-IARKLLEPIKKKY- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchH-HHHHHHHHHHHHc-
Confidence 568899999999999 999999999999999994 8888877544221 112799999999996 7999999999875
Q ss_pred hcCCCccCHHHHHHHhhHHHHHhcCCCccccccCccCCCCcccCCCCCCCCCCCCCHHHHHHHHHHCCCCcccccccccc
Q 036989 104 SKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLTIEDMVVLSGA 183 (318)
Q Consensus 104 ~~cp~~VScADilalAa~~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGa 183 (318)
| +|||||||+||+|+||+++|||.|+|++||+|+.++....++.+||.|+.+++++++.|+++||+++|||||+||
T Consensus 86 ---~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 86 ---P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred ---C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 4 899999999999999999999999999999999999877778899999999999999999999999999999999
Q ss_pred ceeccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCcccCCCCCCCcccchhHHHHhhcccc------
Q 036989 184 HTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYANLEGKLG------ 257 (318)
Q Consensus 184 HtiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~g------ 257 (318)
||||++||.. ++|.|++ ..||.+|||+||++|+.++|
T Consensus 162 HTiG~a~c~~-----~~~~g~~--------------------------------~~tp~~FDn~Yy~~ll~~~g~~~~~~ 204 (253)
T cd00691 162 HTLGRCHKER-----SGYDGPW--------------------------------TKNPLKFDNSYFKELLEEDWKLPTPG 204 (253)
T ss_pred ceeecccccC-----CCCCCCC--------------------------------CCCCCcccHHHHHHHhcCCCccCcCc
Confidence 9999999963 2443311 25999999999999999999
Q ss_pred --ccchhhhhcCChhhHHHHHHHhhhHHHHHHHHHHHHHHHHcCCcc
Q 036989 258 --LLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGVK 302 (318)
Q Consensus 258 --lL~sD~~L~~d~~t~~~v~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 302 (318)
+|+||++|+.|++|+++|++||+|+++|+++|+.||+||+++||.
T Consensus 205 ~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 205 LLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred ceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999986
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=6.5e-65 Score=467.82 Aligned_cols=231 Identities=28% Similarity=0.451 Sum_probs=207.7
Q ss_pred cccccC--CccHHHHHHHHHHHHHHhCCCCccchhhhhcc-----ccccc--CCCceEeccCCCCCCchhhhcccCCCCC
Q 036989 17 DYYAKS--CPQLEQLVGSVTSQQFKEAPVSGPATIRLFFH-----DCFVE--GCDGSILIATKPGSKELAEKDALGNKDL 87 (318)
Q Consensus 17 ~~y~~~--Cp~~e~~Vr~~v~~~~~~~~~~a~~~lRl~FH-----Dc~v~--GcDgSill~~~~~~~~~~E~~~~~N~~L 87 (318)
+||... |+++++.++..+++.+ .+++++|.||||+|| ||+++ ||||||..+ +|+++++|.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~--------~E~~~~~N~gl 74 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFD--------AEQAHGANSGI 74 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCcccccc--------ccccCCCccCH
Confidence 466643 8899999999999988 778999999999999 88876 999999543 79999999998
Q ss_pred ccccHHHHHHHHHHHHhcCCCccCHHHHHHHhhHHHHHhcCCCccccccCccCCCCcccCCCCCCCCCCCCCHHHHHHHH
Q 036989 88 RVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIF 167 (318)
Q Consensus 88 ~~~~~~~i~~iK~~le~~cp~~VScADilalAa~~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F 167 (318)
. ++|++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|+.++. ++..||.|+.++++|++.|
T Consensus 75 ~-~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F 145 (250)
T PLN02364 75 H-IALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPP---PEGRLPDATKGCDHLRDVF 145 (250)
T ss_pred H-HHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccc---ccCCCCCCCcCHHHHHHHH
Confidence 5 7999999999987 48999999999999999999999999999999999876 3568999999999999999
Q ss_pred HH-CCCCccccccccccceeccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCcccCCCCCCCcccch
Q 036989 168 NA-KGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDH 246 (318)
Q Consensus 168 ~~-~Gl~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~~D~~tp~~fDn 246 (318)
++ +||+++|||||+||||||++||. |+ +|.|. + ..||.+|||
T Consensus 146 ~~~~Gl~~~d~VaLsGaHTiG~~hc~----r~-~~~g~-------------------------------~-~~tp~~fDn 188 (250)
T PLN02364 146 AKQMGLSDKDIVALSGAHTLGRCHKD----RS-GFEGA-------------------------------W-TSNPLIFDN 188 (250)
T ss_pred HHhcCCCHHHheeeecceeeccccCC----CC-CCCCC-------------------------------C-CCCCCccch
Confidence 97 69999999999999999999993 44 44331 1 268999999
Q ss_pred hHHHHhhcc--ccccc--hhhhhcCChhhHHHHHHHhhhHHHHHHHHHHHHHHHHcCCcc
Q 036989 247 AYYANLEGK--LGLLA--SDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGVK 302 (318)
Q Consensus 247 ~Yy~~l~~~--~glL~--sD~~L~~d~~t~~~v~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 302 (318)
+||++++.+ +|+|. ||++|+.|++|+.+|+.||.|++.|+++|++||+||++||+.
T Consensus 189 ~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 189 SYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 999999998 88865 999999999999999999999999999999999999999974
No 7
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=2.1e-63 Score=456.99 Aligned_cols=220 Identities=28% Similarity=0.439 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhccccc-------ccCCCceEeccCCCCCCchhhhcccCCCCCccccHHHHHHHHH
Q 036989 28 QLVGSVTSQQFKEAPVSGPATIRLFFHDCF-------VEGCDGSILIATKPGSKELAEKDALGNKDLRVEGFESIRKAKA 100 (318)
Q Consensus 28 ~~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~-------v~GcDgSill~~~~~~~~~~E~~~~~N~~L~~~~~~~i~~iK~ 100 (318)
+-++..|.+.+ .+.+.+|.+|||+||||. .|||||||.+. .|+++++|.||+ .++++|+.||+
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~--------~E~~~~~N~gL~-~~~~~i~~iK~ 87 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP--------QELAHDANNGLD-IAVRLLDPIKE 87 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh--------hhccCCCcCChH-HHHHHHHHHHH
Confidence 34577777766 457999999999999997 48999999874 799999999994 59999999999
Q ss_pred HHHhcCCCccCHHHHHHHhhHHHHHhcCCCccccccCccCCCCcccCCCCCCCCCCCCCHHHHHHHHHHCCCCccccccc
Q 036989 101 LVESKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNAKGLTIEDMVVL 180 (318)
Q Consensus 101 ~le~~cp~~VScADilalAa~~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL 180 (318)
++ ++|||||||+||+++||+++|||.|+|++||+|+..+. ++.+||.|+.++++|+..|+++||+++|||||
T Consensus 88 ~~-----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVAL 159 (251)
T PLN02879 88 LF-----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVAL 159 (251)
T ss_pred Hc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeee
Confidence 87 48999999999999999999999999999999999875 45689999999999999999999999999999
Q ss_pred cccceeccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCcccCCCCCCCcccchhHHHHhhcc--ccc
Q 036989 181 SGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYANLEGK--LGL 258 (318)
Q Consensus 181 sGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~--~gl 258 (318)
+||||||++||. | ++|.|. +| .||.+|||+||++|+.+ +|+
T Consensus 160 sGaHTiG~ah~~----r-~g~~g~-------------------------------~d-~tp~~FDN~Yy~~ll~~~~~gl 202 (251)
T PLN02879 160 SGGHTLGRCHKE----R-SGFEGA-------------------------------WT-PNPLIFDNSYFKEILSGEKEGL 202 (251)
T ss_pred eccccccccccc----c-ccCCCC-------------------------------CC-CCccceeHHHHHHHHcCCcCCC
Confidence 999999999996 3 454442 22 68999999999999998 888
Q ss_pred --cchhhhhcCChhhHHHHHHHhhhHHHHHHHHHHHHHHHHcCCcc
Q 036989 259 --LASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGVK 302 (318)
Q Consensus 259 --L~sD~~L~~d~~t~~~v~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 302 (318)
|+||++|+.|++|+++|++||.|+++||++|++||+||++||+.
T Consensus 203 l~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 203 LQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred ccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 68999999999999999999999999999999999999999985
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.5e-63 Score=470.26 Aligned_cols=236 Identities=27% Similarity=0.369 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHHHhCC---CCccchhhhhcccccc------------cCCCceEeccCCCCCCchhhhcccCCCCCccc
Q 036989 26 LEQLVGSVTSQQFKEAP---VSGPATIRLFFHDCFV------------EGCDGSILIATKPGSKELAEKDALGNKDLRVE 90 (318)
Q Consensus 26 ~e~~Vr~~v~~~~~~~~---~~a~~~lRl~FHDc~v------------~GcDgSill~~~~~~~~~~E~~~~~N~~L~~~ 90 (318)
+|..|++.|++.+..+. ..|+.+|||+||||++ +|||||||++.. .|+++++|.|| +
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~------~E~~~~~N~gL--~ 87 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD------IETAFHANIGL--D 87 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc------ccccCCCCCCH--H
Confidence 68899999999998554 4566799999999996 899999999853 69999999999 4
Q ss_pred cHHHHHHHHHHHHhcCCCccCHHHHHHHhhHHHHH-hcCCCccccccCccCCCCcccCCCCCCCCCCCCCHHHHHHHHHH
Q 036989 91 GFESIRKAKALVESKCPGVVSCADILAIAARDYVH-LAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIKIFNA 169 (318)
Q Consensus 91 ~~~~i~~iK~~le~~cp~~VScADilalAa~~AV~-~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~ 169 (318)
++|+.||..+|+.| |||||||+||||+||+ ++|||.|+|++||+|+.++. ++..||.|+.++++|++.|++
T Consensus 88 --~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F~~ 159 (328)
T cd00692 88 --EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARFAD 159 (328)
T ss_pred --HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHH
Confidence 89999999999998 9999999999999999 57999999999999999875 456899999999999999999
Q ss_pred CCCCccccccccccceeccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCcccCCCCCCCcccchhHH
Q 036989 170 KGLTIEDMVVLSGAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYY 249 (318)
Q Consensus 170 ~Gl~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~~D~~tp~~fDn~Yy 249 (318)
+||+.+|||+|+||||||++|. .||+++ ..++| .||.+|||+||
T Consensus 160 ~Gf~~~E~VaLsGAHTiG~a~~---------------~Dps~~--------------------g~p~D-~TP~~FDn~Yf 203 (328)
T cd00692 160 AGFSPDELVALLAAHSVAAQDF---------------VDPSIA--------------------GTPFD-STPGVFDTQFF 203 (328)
T ss_pred cCCCHHHHhhhcccccccccCC---------------CCCCCC--------------------CCCCC-CCcchhcHHHH
Confidence 9999999999999999999982 266654 14577 69999999999
Q ss_pred HHhh-cccc-------------------ccchhhhhcCChhhHHHHHHHhhhHHHHHHHHHHHHHHHHcCCccCCCCCcc
Q 036989 250 ANLE-GKLG-------------------LLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIGVKRGRKHGE 309 (318)
Q Consensus 250 ~~l~-~~~g-------------------lL~sD~~L~~d~~t~~~v~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~~Ge 309 (318)
++++ .+++ +|+||++|+.|++|+.+|++||.||++|+++|+.||+||++|||...
T Consensus 204 ~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~~~----- 278 (328)
T cd00692 204 IETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQDNI----- 278 (328)
T ss_pred HHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCcc-----
Confidence 9987 4555 49999999999999999999999999999999999999999998732
Q ss_pred ccccCCCCC
Q 036989 310 KRKDCSMHL 318 (318)
Q Consensus 310 iR~~C~~~~ 318 (318)
.+.+|+.|+
T Consensus 279 ~l~dcs~v~ 287 (328)
T cd00692 279 SLTDCSDVI 287 (328)
T ss_pred hhccCcccC
Confidence 478999885
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.9e-58 Score=427.91 Aligned_cols=224 Identities=32% Similarity=0.446 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhccccccc--------CCCceEeccCCCCCCchhhhcccCCCCCccccHHHHHHHHH
Q 036989 29 LVGSVTSQQFKEAPVSGPATIRLFFHDCFVE--------GCDGSILIATKPGSKELAEKDALGNKDLRVEGFESIRKAKA 100 (318)
Q Consensus 29 ~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~v~--------GcDgSill~~~~~~~~~~E~~~~~N~~L~~~~~~~i~~iK~ 100 (318)
.|+..|+..+.+++.+++++|||+||||++. ||||||+++ +|+++++|.+|. +++++|+.||.
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~--------~e~~~~~N~~l~-~~~~~l~~ik~ 72 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE--------PELDRPENGGLD-KALRALEPIKS 72 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc--------ccccCcccccHH-HHHHHHHHHHH
Confidence 5888899999999999999999999999996 999999997 699999999974 89999999999
Q ss_pred HHHhcCCCccCHHHHHHHhhHHHHHhc--CCCccccccCccCCCCcc--cCCCCCCCCCCCCCHHHHHHHHHHCCCCccc
Q 036989 101 LVESKCPGVVSCADILAIAARDYVHLA--GGPYYQVKKGRWDGKISM--ASRVPFNLPRANSTIDQIIKIFNAKGLTIED 176 (318)
Q Consensus 101 ~le~~cp~~VScADilalAa~~AV~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e 176 (318)
++|. |++|||||||+||+++||+.+ |||.|+|++||+|+..+. ...+...+|.|+.++.++++.|+++||+++|
T Consensus 73 ~~~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e 150 (255)
T cd00314 73 AYDG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSE 150 (255)
T ss_pred HcCC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHH
Confidence 9988 889999999999999999999 999999999999999763 3345667888889999999999999999999
Q ss_pred ccccc-cccee-ccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCcccCCCCCCCcccchhHHHHhhc
Q 036989 177 MVVLS-GAHTI-GFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLFDHAYYANLEG 254 (318)
Q Consensus 177 ~VaLs-GaHti-G~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~ 254 (318)
||||+ ||||| |++||..|..|+ |+ +++.||.+|||+||++++.
T Consensus 151 ~VAL~~GaHti~G~~~~~~~~~~~------------------------~~-----------~~~~tp~~fDN~yy~~l~~ 195 (255)
T cd00314 151 LVALSAGAHTLGGKNHGDLLNYEG------------------------SG-----------LWTSTPFTFDNAYFKNLLD 195 (255)
T ss_pred HHhhccCCeeccCcccCCCCCccc------------------------CC-----------CCCCCCCccchHHHHHHhc
Confidence 99999 99999 999999877664 21 2358999999999999999
Q ss_pred cc----------------cccchhhhhcCChhhHHHHHHHhhhHHHHHHHHHHHHHHHHc
Q 036989 255 KL----------------GLLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGS 298 (318)
Q Consensus 255 ~~----------------glL~sD~~L~~d~~t~~~v~~yA~d~~~F~~~Fa~Am~Km~~ 298 (318)
++ ++|+||+.|+.|++|+.+|++||.|+++|+++|++||+||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 196 MNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred CCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 88 899999999999999999999999999999999999999975
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=6.7e-58 Score=440.62 Aligned_cols=261 Identities=22% Similarity=0.262 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHHhC--------CCCccchhhhhcccccc-------cCCC-ceEeccCCCCCCchhhhcccCCCCCccc
Q 036989 27 EQLVGSVTSQQFKEA--------PVSGPATIRLFFHDCFV-------EGCD-GSILIATKPGSKELAEKDALGNKDLRVE 90 (318)
Q Consensus 27 e~~Vr~~v~~~~~~~--------~~~a~~~lRl~FHDc~v-------~GcD-gSill~~~~~~~~~~E~~~~~N~~L~~~ 90 (318)
.+.|++.|++.+... ...+|.+|||+|||+.+ ||++ |+|.++ +|++++.|.+|. +
T Consensus 44 ~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~--------pe~~~~~N~gL~-~ 114 (409)
T cd00649 44 LEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA--------PLNSWPDNVNLD-K 114 (409)
T ss_pred HHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc--------cccCcHhhhhHH-H
Confidence 367899999988854 47999999999999985 7886 788876 799999999996 7
Q ss_pred cHHHHHHHHHHHHhcCCCccCHHHHHHHhhHHHHHhcCCCccccccCccCCCCcccC-----------------------
Q 036989 91 GFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMAS----------------------- 147 (318)
Q Consensus 91 ~~~~i~~iK~~le~~cp~~VScADilalAa~~AV~~~GGP~~~v~~GR~D~~~s~~~----------------------- 147 (318)
++.+++.||++. |..||+||+|+||+.+|||.+|||.|+|.+||.|.......
T Consensus 115 a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~ 190 (409)
T cd00649 115 ARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLEN 190 (409)
T ss_pred HHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhcc
Confidence 999999999865 55799999999999999999999999999999999754320
Q ss_pred ------------CCCC--CCCCCCCCHHHHHHHHHHCCCCccccccc-cccceeccccccccccccccCCCCCCCCCCCC
Q 036989 148 ------------RVPF--NLPRANSTIDQIIKIFNAKGLTIEDMVVL-SGAHTIGFAHCEHFVSRLYDYRGTKQPDPAID 212 (318)
Q Consensus 148 ------------~~~~--~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL-sGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~~ 212 (318)
.+++ .||+|..++.+|++.|++|||+++||||| +||||||++||..|.+|| .+||+++
T Consensus 191 pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rl-------g~dP~~~ 263 (409)
T cd00649 191 PLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHV-------GPEPEAA 263 (409)
T ss_pred chhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccC-------CCCCCcC
Confidence 1223 79999999999999999999999999999 599999999999999998 2699999
Q ss_pred HHHHHHHH--hhCCCCCCCCCcccCCC---CCCCcccchhHHHHhhc---------------------------------
Q 036989 213 PRLLRALR--MACPHFGGNTDIVAPFD---VTTPFLFDHAYYANLEG--------------------------------- 254 (318)
Q Consensus 213 ~~~~~~L~--~~Cp~~~~~~~~~~~~D---~~tp~~fDn~Yy~~l~~--------------------------------- 254 (318)
+.|++.|+ .+||...+++...+.+| +.||.+|||+||++|+.
T Consensus 264 ~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~ 343 (409)
T cd00649 264 PIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPS 343 (409)
T ss_pred HHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccc
Confidence 99999996 78994334444566788 58999999999999998
Q ss_pred ---cccccchhhhhcCChhhHHHHHHHhhhHHHHHHHHHHHHHHH--HcCCccCCCCCc
Q 036989 255 ---KLGLLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKM--GSIGVKRGRKHG 308 (318)
Q Consensus 255 ---~~glL~sD~~L~~d~~t~~~v~~yA~d~~~F~~~Fa~Am~Km--~~lgv~tg~~~G 308 (318)
++++|+||++|+.|++++++|++||+|+++||++|++||.|| .++|+++.-. |
T Consensus 344 ~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~-g 401 (409)
T cd00649 344 KKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYL-G 401 (409)
T ss_pred cccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhc-C
Confidence 569999999999999999999999999999999999999999 6899988765 5
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=5.1e-55 Score=444.70 Aligned_cols=267 Identities=24% Similarity=0.256 Sum_probs=228.9
Q ss_pred cccCCccH-HHHHHHHHHHHHHhC--------CCCccchhhhhcccccc-------cCC-CceEeccCCCCCCchhhhcc
Q 036989 19 YAKSCPQL-EQLVGSVTSQQFKEA--------PVSGPATIRLFFHDCFV-------EGC-DGSILIATKPGSKELAEKDA 81 (318)
Q Consensus 19 y~~~Cp~~-e~~Vr~~v~~~~~~~--------~~~a~~~lRl~FHDc~v-------~Gc-DgSill~~~~~~~~~~E~~~ 81 (318)
|.+.+-++ .+.||+.|++.+... .+.+|.+|||+||++.+ ||| .|+|.++ +|+++
T Consensus 45 y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~--------P~~sw 116 (716)
T TIGR00198 45 YAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA--------PLNSW 116 (716)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc--------cccCc
Confidence 34444332 346899999998864 47999999999999985 687 4778775 79999
Q ss_pred cCCCCCccccHHHHHHHHHHHHhcCCCccCHHHHHHHhhHHHHHhcCCCccccccCccCCCCccc---------------
Q 036989 82 LGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMA--------------- 146 (318)
Q Consensus 82 ~~N~~L~~~~~~~i~~iK~~le~~cp~~VScADilalAa~~AV~~~GGP~~~v~~GR~D~~~s~~--------------- 146 (318)
+.|.+|. +++.+++.||+ .||++|||||||+|||++||+.+|||.|+|.+||+|+..+..
T Consensus 117 ~~N~~Ld-ka~~lL~pIk~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~ 191 (716)
T TIGR00198 117 PDNVNLD-KARRLLWPIKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSR 191 (716)
T ss_pred hhhhhHH-HHHHHHHHHHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccc
Confidence 9999997 89999999997 689999999999999999999999999999999999953210
Q ss_pred ----------C-----------CCCCCCCCCCCCHHHHHHHHHHCCCCcccccccc-ccceeccccccccccccccCCCC
Q 036989 147 ----------S-----------RVPFNLPRANSTIDQIIKIFNAKGLTIEDMVVLS-GAHTIGFAHCEHFVSRLYDYRGT 204 (318)
Q Consensus 147 ----------~-----------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs-GaHtiG~~hc~~f~~Rl~~f~g~ 204 (318)
. +....+|.|..++.+|++.|++||||++|||||+ ||||||++||.+|.+||
T Consensus 192 ~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl------ 265 (716)
T TIGR00198 192 EDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI------ 265 (716)
T ss_pred cccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC------
Confidence 0 1122699999999999999999999999999995 99999999999999998
Q ss_pred CCCCCCCCHHHHHHHHhhCCCCC--CCCCcccCCC---CCCCcccchhHHHHhhcc------------------------
Q 036989 205 KQPDPAIDPRLLRALRMACPHFG--GNTDIVAPFD---VTTPFLFDHAYYANLEGK------------------------ 255 (318)
Q Consensus 205 ~~~dp~~~~~~~~~L~~~Cp~~~--~~~~~~~~~D---~~tp~~fDn~Yy~~l~~~------------------------ 255 (318)
.+||++++.|++.|+++||... +.++..+.+| +.||.+|||+||++|+.+
T Consensus 266 -g~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p 344 (716)
T TIGR00198 266 -GPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIP 344 (716)
T ss_pred -CCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccc
Confidence 2799999999999999998532 2233356787 689999999999999974
Q ss_pred ----------ccccchhhhhcCChhhHHHHHHHhhhHHHHHHHHHHHHHHHH--cCCccCCC
Q 036989 256 ----------LGLLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMG--SIGVKRGR 305 (318)
Q Consensus 256 ----------~glL~sD~~L~~d~~t~~~v~~yA~d~~~F~~~Fa~Am~Km~--~lgv~tg~ 305 (318)
.++|+||++|..|++++.+|++||.|++.|+++|++||.||+ ++|++..-
T Consensus 345 ~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y 406 (716)
T TIGR00198 345 DVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRY 406 (716)
T ss_pred cccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhh
Confidence 689999999999999999999999999999999999999998 56665443
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=5.4e-52 Score=420.36 Aligned_cols=268 Identities=23% Similarity=0.283 Sum_probs=228.5
Q ss_pred cccCCccH-HHHHHHHHHHHHHhC--------CCCccchhhhhcccccc-------cCCC-ceEeccCCCCCCchhhhcc
Q 036989 19 YAKSCPQL-EQLVGSVTSQQFKEA--------PVSGPATIRLFFHDCFV-------EGCD-GSILIATKPGSKELAEKDA 81 (318)
Q Consensus 19 y~~~Cp~~-e~~Vr~~v~~~~~~~--------~~~a~~~lRl~FHDc~v-------~GcD-gSill~~~~~~~~~~E~~~ 81 (318)
|.+-+-++ .+.|++.|++.+... .+.+|.+|||+||++.+ |||+ |+|.+. +|+++
T Consensus 47 y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~--------pe~~w 118 (726)
T PRK15061 47 YAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA--------PLNSW 118 (726)
T ss_pred HHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc--------ccccc
Confidence 34444333 456899999988854 57999999999999985 7886 777775 79999
Q ss_pred cCCCCCccccHHHHHHHHHHHHhcCCCccCHHHHHHHhhHHHHHhcCCCccccccCccCCCCcccC--------------
Q 036989 82 LGNKDLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMAS-------------- 147 (318)
Q Consensus 82 ~~N~~L~~~~~~~i~~iK~~le~~cp~~VScADilalAa~~AV~~~GGP~~~v~~GR~D~~~s~~~-------------- 147 (318)
+.|.+|. +++.+++.||++. |..||+||+|+||+.+|||.+|||.|+|.+||.|.......
T Consensus 119 ~~N~gL~-ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~ 193 (726)
T PRK15061 119 PDNVNLD-KARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDE 193 (726)
T ss_pred hhhhhHH-HHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccccccccc
Confidence 9999997 8999999999865 56899999999999999999999999999999998754321
Q ss_pred ------------------------CCCCCCCCCCCCHHHHHHHHHHCCCCcccccccc-ccceeccccccccccccccCC
Q 036989 148 ------------------------RVPFNLPRANSTIDQIIKIFNAKGLTIEDMVVLS-GAHTIGFAHCEHFVSRLYDYR 202 (318)
Q Consensus 148 ------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs-GaHtiG~~hc~~f~~Rl~~f~ 202 (318)
+-...+|+|..++.+|+..|++|||+++|||||+ ||||||++||..|.+||
T Consensus 194 r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl---- 269 (726)
T PRK15061 194 RYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV---- 269 (726)
T ss_pred ccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc----
Confidence 0112479999999999999999999999999995 99999999999999998
Q ss_pred CCCCCCCCCCHHHHHHHH--hhCCCCCCCCCcccCCC---CCCCcccchhHHHHhhcc----------------------
Q 036989 203 GTKQPDPAIDPRLLRALR--MACPHFGGNTDIVAPFD---VTTPFLFDHAYYANLEGK---------------------- 255 (318)
Q Consensus 203 g~~~~dp~~~~~~~~~L~--~~Cp~~~~~~~~~~~~D---~~tp~~fDn~Yy~~l~~~---------------------- 255 (318)
.+||.+++.+++.|. ..||...+.++.++.+| +.||.+|||+||++|+.+
T Consensus 270 ---gpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~ 346 (726)
T PRK15061 270 ---GPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAE 346 (726)
T ss_pred ---CCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCcccc
Confidence 379999999999986 78994234445567788 689999999999999974
Q ss_pred --------------ccccchhhhhcCChhhHHHHHHHhhhHHHHHHHHHHHHHHHH--cCCccCCCC
Q 036989 256 --------------LGLLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMG--SIGVKRGRK 306 (318)
Q Consensus 256 --------------~glL~sD~~L~~d~~t~~~v~~yA~d~~~F~~~Fa~Am~Km~--~lgv~tg~~ 306 (318)
.++|+||++|+.||+++.+|++||+|+++|+++|++||.||+ .+|+++.-.
T Consensus 347 ~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~ 413 (726)
T PRK15061 347 DTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYL 413 (726)
T ss_pred ccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhc
Confidence 589999999999999999999999999999999999999995 477665433
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2.3e-50 Score=370.37 Aligned_cols=232 Identities=24% Similarity=0.304 Sum_probs=183.8
Q ss_pred CCccccccCCccHHHHHHHHHHHHHHhCCCCccchhhhhccccc-------ccCCCceEeccCCCCCCchhhhc-ccCCC
Q 036989 14 LSVDYYAKSCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCF-------VEGCDGSILIATKPGSKELAEKD-ALGNK 85 (318)
Q Consensus 14 l~~~~y~~~Cp~~e~~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~-------v~GcDgSill~~~~~~~~~~E~~-~~~N~ 85 (318)
++.+||+.. .-+.|...-......+++++++||||+||||+ ++||||||+++.. . +|+. .+.|.
T Consensus 14 ~~~g~~~~~---f~~~v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~--~En~G~~~n~ 85 (264)
T cd08201 14 LQSGYSARG---FVAGVTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---R--PENIGSGFNT 85 (264)
T ss_pred hcccceecc---cccccccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---C--hhhccCchhh
Confidence 455666642 22233344444556889999999999999999 8999999999742 2 5665 44555
Q ss_pred CCccccHHHHHHHHHHHHhcCCCccCHHHHHHHhhHHHHHhcCCCccccccCccCCCCcccCCCCCCCCCCCCCHHHHHH
Q 036989 86 DLRVEGFESIRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPFNLPRANSTIDQIIK 165 (318)
Q Consensus 86 ~L~~~~~~~i~~iK~~le~~cp~~VScADilalAa~~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~ 165 (318)
.| ++|+.|+. .+||||||||||+++||+.+|||.|+|++||+|+.++.+ . .||.|+.++++|++
T Consensus 86 ~l--~~~~~i~~----------~~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~---~-glP~P~~~v~~l~~ 149 (264)
T cd08201 86 TL--NFFVNFYS----------PRSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQ---A-GVPEPQTDLGTTTE 149 (264)
T ss_pred cc--ccceeecc----------CccCHHHHHHHHHHHHHHHcCCCeecccccCCCcccccc---c-cCCCCccCHHHHHH
Confidence 55 66776643 269999999999999999999999999999999998763 2 49999999999999
Q ss_pred HHHHCCCCccccccccc-cceeccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCcccCCCCCCCccc
Q 036989 166 IFNAKGLTIEDMVVLSG-AHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTTPFLF 244 (318)
Q Consensus 166 ~F~~~Gl~~~e~VaLsG-aHtiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~~D~~tp~~f 244 (318)
.|+++||+++|||+|+| |||||++||..|.++.- | +...+...+|| .||.+|
T Consensus 150 ~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~---------~-----------------g~~~~~~~p~d-stp~~F 202 (264)
T cd08201 150 SFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVP---------P-----------------GSVPDTVLQFF-DTTIQF 202 (264)
T ss_pred HHHHcCCChHHHheeecCCeeeeecccccchhhcC---------C-----------------ccccCCCCCCC-CCcccc
Confidence 99999999999999996 99999999998877641 0 00001234677 799999
Q ss_pred chhHHHHhhccc----------cccchhhhhcCChhhHHHHHHHhhhHHHHHHHHHHHHHHHHc
Q 036989 245 DHAYYANLEGKL----------GLLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGS 298 (318)
Q Consensus 245 Dn~Yy~~l~~~~----------glL~sD~~L~~d~~t~~~v~~yA~d~~~F~~~Fa~Am~Km~~ 298 (318)
||+||.+++.+. ..+.||..+|+..... .++.+| +++.|.+.++..++||++
T Consensus 203 Dn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 203 DNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred chHHHHHHhcCCCCCceeecCCCCccchhhheecCccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 999999999864 2478999999876544 457787 689999999999999975
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=7.6e-41 Score=310.90 Aligned_cols=220 Identities=18% Similarity=0.229 Sum_probs=181.0
Q ss_pred HHHHHHHHhCCCCccchhhhhcccccc-------cCCCce-EeccCCCCCCchhhhcccCCCC--CccccHHHHHHHHHH
Q 036989 32 SVTSQQFKEAPVSGPATIRLFFHDCFV-------EGCDGS-ILIATKPGSKELAEKDALGNKD--LRVEGFESIRKAKAL 101 (318)
Q Consensus 32 ~~v~~~~~~~~~~a~~~lRl~FHDc~v-------~GcDgS-ill~~~~~~~~~~E~~~~~N~~--L~~~~~~~i~~iK~~ 101 (318)
+.+++.+.....+++.+|||+||++.+ ||++|+ |.+. +|++|+.|.+ |. +++.+++.||++
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~--------pe~~w~~N~~~~L~-~~~~~Le~ik~~ 87 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA--------PQKDWEVNEPEELA-KVLAVLEGIQKE 87 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc--------cccCcCccCcHHHH-HHHHHHHHHHHH
Confidence 567777778888899999999999985 799999 6665 8999999999 86 799999999998
Q ss_pred HHhc-CC-CccCHHHHHHHhhHHHHHhcCC-----CccccccCccCCCCcccCCCC---CCCCCCC------------CC
Q 036989 102 VESK-CP-GVVSCADILAIAARDYVHLAGG-----PYYQVKKGRWDGKISMASRVP---FNLPRAN------------ST 159 (318)
Q Consensus 102 le~~-cp-~~VScADilalAa~~AV~~~GG-----P~~~v~~GR~D~~~s~~~~~~---~~lP~p~------------~~ 159 (318)
.... -+ ..||+||+|+||+.+|||.+|| |.|+|.+||.|...... +++ ..+|.+. .+
T Consensus 88 ~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~t-d~~sf~~l~P~adg~rny~~~~~~~~~ 166 (297)
T cd08200 88 FNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQT-DVESFEVLEPKADGFRNYLKKGYRVPP 166 (297)
T ss_pred hcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCC-CcccccccCCCCcccccccccCCCCCH
Confidence 7421 12 2799999999999999999999 99999999999987632 222 1335332 24
Q ss_pred HHHHHHHHHHCCCCccccccccccc-eeccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCcccCCCC
Q 036989 160 IDQIIKIFNAKGLTIEDMVVLSGAH-TIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDV 238 (318)
Q Consensus 160 ~~~l~~~F~~~Gl~~~e~VaLsGaH-tiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~~D~ 238 (318)
...|++.|.+||||++|||||+||| ++|..|..+ +.|.| +
T Consensus 167 ~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~G~w--------------------------------T 207 (297)
T cd08200 167 EEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHGVF--------------------------------T 207 (297)
T ss_pred HHHHHHHHHhCCCChHHHhheecchhhcccCCCCC-------CCCCC--------------------------------c
Confidence 5789999999999999999999998 799887532 11222 3
Q ss_pred CCCcccchhHHHHhhccc--------------------c-----ccchhhhhcCChhhHHHHHHHhhh--HHHHHHHHHH
Q 036989 239 TTPFLFDHAYYANLEGKL--------------------G-----LLASDQVLFLDPRTKSLVQELGKD--KQKFFQAFAV 291 (318)
Q Consensus 239 ~tp~~fDn~Yy~~l~~~~--------------------g-----lL~sD~~L~~d~~t~~~v~~yA~d--~~~F~~~Fa~ 291 (318)
.+|.+|||.||++|+... | .+++|..|.+|++.+++|+.||+| ++.||++|+.
T Consensus 208 ~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~ 287 (297)
T cd08200 208 DRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVA 287 (297)
T ss_pred CCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHH
Confidence 688999999999998520 1 278899999999999999999999 9999999999
Q ss_pred HHHHHHcCC
Q 036989 292 AMEKMGSIG 300 (318)
Q Consensus 292 Am~Km~~lg 300 (318)
||.||+++.
T Consensus 288 A~~Klmeld 296 (297)
T cd08200 288 AWTKVMNLD 296 (297)
T ss_pred HHHHHHhcC
Confidence 999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.5e-35 Score=302.38 Aligned_cols=221 Identities=19% Similarity=0.231 Sum_probs=178.6
Q ss_pred HHHHHHHHH---HHhCCCCccchhhhhcccccc-------cCCCce-EeccCCCCCCchhhhcccCC--CCCccccHHHH
Q 036989 29 LVGSVTSQQ---FKEAPVSGPATIRLFFHDCFV-------EGCDGS-ILIATKPGSKELAEKDALGN--KDLRVEGFESI 95 (318)
Q Consensus 29 ~Vr~~v~~~---~~~~~~~a~~~lRl~FHDc~v-------~GcDgS-ill~~~~~~~~~~E~~~~~N--~~L~~~~~~~i 95 (318)
+|++.|... +....-.++.|||++||++.+ ||++|+ |.+. +|++++.| .+|. +.+.++
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~--------pe~~w~~N~p~gL~-~vl~~L 499 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE--------PQKNWPVNEPTRLA-KVLAVL 499 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc--------hhcCcccCCHHHHH-HHHHHH
Confidence 345555543 556677889999999999985 799998 7765 89999999 8996 799999
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHhhHHHHHhc---CCC--ccccccCccCCCCcccCCCCCCCCC-C-------------
Q 036989 96 RKAKALVESKCPGVVSCADILAIAARDYVHLA---GGP--YYQVKKGRWDGKISMASRVPFNLPR-A------------- 156 (318)
Q Consensus 96 ~~iK~~le~~cp~~VScADilalAa~~AV~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP~-p------------- 156 (318)
+.||++... ..||+||+|+||+.+|||.+ ||| .|+|.+||.|+.... .+++...|. |
T Consensus 500 e~Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~-td~~~~~~l~p~adgfRn~~~~~~ 575 (716)
T TIGR00198 500 EKIQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAM-TDAESFTPLEPIADGFRNYLKRDY 575 (716)
T ss_pred HHHHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCC-CCccccccCCCCCcccchhccccc
Confidence 999987631 37999999999999999998 898 579999999998764 234433331 1
Q ss_pred -CCCHHHHHHHHHHCCCCccccccccccc-eeccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCccc
Q 036989 157 -NSTIDQIIKIFNAKGLTIEDMVVLSGAH-TIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVA 234 (318)
Q Consensus 157 -~~~~~~l~~~F~~~Gl~~~e~VaLsGaH-tiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~ 234 (318)
......|++.|.++|||++|||||+||| ++|+.|..+ +.|.|
T Consensus 576 ~~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s-------~~G~~----------------------------- 619 (716)
T TIGR00198 576 AVTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS-------KHGVF----------------------------- 619 (716)
T ss_pred cCCHHHHHHHHHHhCCCChHHHHheecchhhccccCCCC-------CCCCC-----------------------------
Confidence 2345678999999999999999999995 999988642 11211
Q ss_pred CCCCCCCcccchhHHHHhhccc--------------------c---c--cchhhhhcCChhhHHHHHHHhhhH--HHHHH
Q 036989 235 PFDVTTPFLFDHAYYANLEGKL--------------------G---L--LASDQVLFLDPRTKSLVQELGKDK--QKFFQ 287 (318)
Q Consensus 235 ~~D~~tp~~fDn~Yy~~l~~~~--------------------g---l--L~sD~~L~~d~~t~~~v~~yA~d~--~~F~~ 287 (318)
+.+|.+|||.||++|+... | + +++|..|..|++.|++|+.||+|+ +.||+
T Consensus 620 ---T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~ 696 (716)
T TIGR00198 620 ---TDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVK 696 (716)
T ss_pred ---cCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHH
Confidence 3688999999999998621 1 2 278999999999999999999997 89999
Q ss_pred HHHHHHHHHHcCCc
Q 036989 288 AFAVAMEKMGSIGV 301 (318)
Q Consensus 288 ~Fa~Am~Km~~lgv 301 (318)
+|++||.|+++++-
T Consensus 697 DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 697 DFVAAWTKVMNLDR 710 (716)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999999884
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=4.7e-35 Score=297.23 Aligned_cols=221 Identities=21% Similarity=0.250 Sum_probs=182.3
Q ss_pred HHHHHHHHhCCCCccchhhhhcccccc-------cCCCce-EeccCCCCCCchhhhcccCCC--CCccccHHHHHHHHHH
Q 036989 32 SVTSQQFKEAPVSGPATIRLFFHDCFV-------EGCDGS-ILIATKPGSKELAEKDALGNK--DLRVEGFESIRKAKAL 101 (318)
Q Consensus 32 ~~v~~~~~~~~~~a~~~lRl~FHDc~v-------~GcDgS-ill~~~~~~~~~~E~~~~~N~--~L~~~~~~~i~~iK~~ 101 (318)
..++..+....-..+.|||++||++.+ ||++|+ |.+. +|++++.|+ +|. +++.+++.||++
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~--------Pq~~w~~N~p~~L~-~vl~~LE~Ik~~ 512 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA--------PQKDWEVNEPAQLA-KVLAVLEGIQAE 512 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc--------cccCccccCHHHHH-HHHHHHHHHHHH
Confidence 567777777788899999999999985 799998 7775 899999999 886 799999999999
Q ss_pred HHhcC--CCccCHHHHHHHhhHHHHHhc---CC--CccccccCccCCCCcccCCCCC---CCCCCC------------CC
Q 036989 102 VESKC--PGVVSCADILAIAARDYVHLA---GG--PYYQVKKGRWDGKISMASRVPF---NLPRAN------------ST 159 (318)
Q Consensus 102 le~~c--p~~VScADilalAa~~AV~~~---GG--P~~~v~~GR~D~~~s~~~~~~~---~lP~p~------------~~ 159 (318)
.+..- ...||.||+|+||+.+|||.+ || |.|++.+||.|+.... ++++. .+|.+. ..
T Consensus 513 f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~-td~esf~~l~P~Adgfrny~~~~~~~~~ 591 (726)
T PRK15061 513 FNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQ-TDVESFAVLEPKADGFRNYLKKGYSVSP 591 (726)
T ss_pred HhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCC-CCcccccccCCCCccccccccccCCCCH
Confidence 86432 237999999999999999988 68 9999999999998754 33332 456532 23
Q ss_pred HHHHHHHHHHCCCCccccccccccc-eeccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCcccCCCC
Q 036989 160 IDQIIKIFNAKGLTIEDMVVLSGAH-TIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDV 238 (318)
Q Consensus 160 ~~~l~~~F~~~Gl~~~e~VaLsGaH-tiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~~D~ 238 (318)
...|++.|.++|||++|||||+||| ++|..|..+ +.|.| +
T Consensus 592 e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S-------~~G~~--------------------------------T 632 (726)
T PRK15061 592 EELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHGVF--------------------------------T 632 (726)
T ss_pred HHHHHHHHHhCCCChHHHhheecchhhcccCCCCC-------CCCCC--------------------------------c
Confidence 4789999999999999999999997 789887432 11211 3
Q ss_pred CCCcccchhHHHHhhccc--------------------c-----ccchhhhhcCChhhHHHHHHHhhh--HHHHHHHHHH
Q 036989 239 TTPFLFDHAYYANLEGKL--------------------G-----LLASDQVLFLDPRTKSLVQELGKD--KQKFFQAFAV 291 (318)
Q Consensus 239 ~tp~~fDn~Yy~~l~~~~--------------------g-----lL~sD~~L~~d~~t~~~v~~yA~d--~~~F~~~Fa~ 291 (318)
.+|.+|||.||++|+... | .+++|..|.+|++.|++|+.||+| +++||++|+.
T Consensus 633 ~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~ 712 (726)
T PRK15061 633 DRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVA 712 (726)
T ss_pred CCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHH
Confidence 688999999999998520 1 158899999999999999999999 9999999999
Q ss_pred HHHHHHcCCc
Q 036989 292 AMEKMGSIGV 301 (318)
Q Consensus 292 Am~Km~~lgv 301 (318)
||.|+++++-
T Consensus 713 Aw~Kvmeldr 722 (726)
T PRK15061 713 AWTKVMNLDR 722 (726)
T ss_pred HHHHHHhCCC
Confidence 9999999873
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-32 Score=267.28 Aligned_cols=254 Identities=22% Similarity=0.239 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHhC--------CCCccchhhhhcccccccCCCceEeccCCCC----C--CchhhhcccCCCCCccccHHH
Q 036989 29 LVGSVTSQQFKEA--------PVSGPATIRLFFHDCFVEGCDGSILIATKPG----S--KELAEKDALGNKDLRVEGFES 94 (318)
Q Consensus 29 ~Vr~~v~~~~~~~--------~~~a~~~lRl~FHDc~v~GcDgSill~~~~~----~--~~~~E~~~~~N~~L~~~~~~~ 94 (318)
.|...++..+... .+.+|.+|||+||-+. ++.+.+..| + .+.++..+|.|.+|+ +++++
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAG------TYRi~DGRGGa~~G~qRFaPlnSWPDN~nLD-KarRL 143 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAG------TYRIGDGRGGAGGGQQRFAPLNSWPDNANLD-KARRL 143 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccC------ceecccCCCCCCCCceecccccCCCcccchH-HHHHH
Confidence 3555566666543 4689999999999985 444443221 1 134789999999997 89999
Q ss_pred HHHHHHHHHhcCCCccCHHHHHHHhhHHHHHhcCCCccccccCccCCCCcccC---------------------------
Q 036989 95 IRKAKALVESKCPGVVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMAS--------------------------- 147 (318)
Q Consensus 95 i~~iK~~le~~cp~~VScADilalAa~~AV~~~GGP~~~v~~GR~D~~~s~~~--------------------------- 147 (318)
++.||+++ +.+||+||+|+|++.+|++.+|++.+.+..||.|-..+...
T Consensus 144 LWPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaa 219 (730)
T COG0376 144 LWPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAA 219 (730)
T ss_pred hhhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhh
Confidence 99999864 67999999999999999999999999999999998877540
Q ss_pred ----------CCCCCCCCCCCCHHHHHHHHHHCCCCcccccccc-ccceeccccccccccccccCCCCCCCCCCCCHHHH
Q 036989 148 ----------RVPFNLPRANSTIDQIIKIFNAKGLTIEDMVVLS-GAHTIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLL 216 (318)
Q Consensus 148 ----------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs-GaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~ 216 (318)
+-....|+|..+..+++..|++|+|+++|+|||+ ||||+|++|...-.+- -.++|.-.+--.
T Consensus 220 vqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~-------vg~ePe~a~ie~ 292 (730)
T COG0376 220 VQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASN-------VGPEPEAAPIEQ 292 (730)
T ss_pred heeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhh-------cCCCccccchhh
Confidence 1234688999999999999999999999999998 5999999997652222 246777666666
Q ss_pred HHHHhhCCC--CCCCCCcccCCC---CCCCcccchhHHHHhhcc-----------------------------------c
Q 036989 217 RALRMACPH--FGGNTDIVAPFD---VTTPFLFDHAYYANLEGK-----------------------------------L 256 (318)
Q Consensus 217 ~~L~~~Cp~--~~~~~~~~~~~D---~~tp~~fDn~Yy~~l~~~-----------------------------------~ 256 (318)
+.|-+.-.. ..+.+..+..+. +.||++|||.||.+|... .
T Consensus 293 qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p 372 (730)
T COG0376 293 QGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGP 372 (730)
T ss_pred hccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCc
Confidence 666654322 123344444544 478999999999999853 1
Q ss_pred cccchhhhhcCChhhHHHHHHHhhhHHHHHHHHHHHHHHHHcCC
Q 036989 257 GLLASDQVLFLDPRTKSLVQELGKDKQKFFQAFAVAMEKMGSIG 300 (318)
Q Consensus 257 glL~sD~~L~~d~~t~~~v~~yA~d~~~F~~~Fa~Am~Km~~lg 300 (318)
.||++|.+|.-||..+.+.++|.+|++.|.+.|++||.||.+-.
T Consensus 373 ~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 373 MMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred eeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 47999999999999999999999999999999999999998743
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.2e-13 Score=135.91 Aligned_cols=216 Identities=19% Similarity=0.224 Sum_probs=157.3
Q ss_pred HHHHHHHHhCCCCccchhhhhcccccc-------cCCCceEe-ccCCCCCCchhhhcccCCCC--CccccHHHHHHHHHH
Q 036989 32 SVTSQQFKEAPVSGPATIRLFFHDCFV-------EGCDGSIL-IATKPGSKELAEKDALGNKD--LRVEGFESIRKAKAL 101 (318)
Q Consensus 32 ~~v~~~~~~~~~~a~~~lRl~FHDc~v-------~GcDgSil-l~~~~~~~~~~E~~~~~N~~--L~~~~~~~i~~iK~~ 101 (318)
..++..+....-....|+-.+|-.+-+ +|.+|.-+ |. +.++|+.|.. |. +.+.+++.|...
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa--------PqkdWevN~P~~l~-kvl~~le~iq~~ 522 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA--------PQKDWEVNQPAELA-KVLAVLEKIQKE 522 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec--------ccccCCCCCHHHHH-HHHHHHHHHHHH
Confidence 446667777777788899999988764 56665433 33 7899999963 42 578888888887
Q ss_pred HHhcCCCccCHHHHHHHhhHHHHHh---cCCCc--cccccCccCCCCcccCCCCCCCC-CC--------------CCCHH
Q 036989 102 VESKCPGVVSCADILAIAARDYVHL---AGGPY--YQVKKGRWDGKISMASRVPFNLP-RA--------------NSTID 161 (318)
Q Consensus 102 le~~cp~~VScADilalAa~~AV~~---~GGP~--~~v~~GR~D~~~s~~~~~~~~lP-~p--------------~~~~~ 161 (318)
.+ ..||.||+|+|++..|||. .+|-. ++|.+||.|+..... +++..-| .| ..+..
T Consensus 523 fn----kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqt-Dv~sf~~LeP~aDGfRNy~~~~~~~~pe~ 597 (730)
T COG0376 523 FN----KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQT-DVESFAVLEPIADGFRNYVKKDYVLTPEE 597 (730)
T ss_pred hc----CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhc-chhhhhcccccchhhhhhccCCCcCCHHH
Confidence 75 4799999999999999995 46654 467899999987653 3322211 22 12355
Q ss_pred HHHHHHHHCCCCccccccccccc-eeccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCcccCCCCCC
Q 036989 162 QIIKIFNAKGLTIEDMVVLSGAH-TIGFAHCEHFVSRLYDYRGTKQPDPAIDPRLLRALRMACPHFGGNTDIVAPFDVTT 240 (318)
Q Consensus 162 ~l~~~F~~~Gl~~~e~VaLsGaH-tiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~~D~~t 240 (318)
-|++.-+-.+||..||++|+||. .+|.-+ .|+ ...+. +..
T Consensus 598 ~LvDkAqlL~LtapemtVLiGGlRvLg~n~-----------g~s--------------------------~~GVf--T~~ 638 (730)
T COG0376 598 LLVDKAQLLTLTAPEMTVLIGGLRVLGANY-----------GGS--------------------------KHGVF--TDR 638 (730)
T ss_pred HHHHHHHHhccCCccceEEEcceEeeccCC-----------CCC--------------------------cccee--ccC
Confidence 68888888999999999999976 555432 221 11122 346
Q ss_pred CcccchhHHHHhhccc--------------------c-----ccchhhhhcCChhhHHHHHHHhhh--HHHHHHHHHHHH
Q 036989 241 PFLFDHAYYANLEGKL--------------------G-----LLASDQVLFLDPRTKSLVQELGKD--KQKFFQAFAVAM 293 (318)
Q Consensus 241 p~~fDn~Yy~~l~~~~--------------------g-----lL~sD~~L~~d~~t~~~v~~yA~d--~~~F~~~Fa~Am 293 (318)
|..+.|.||.||+... | --.+|..+-+++..|.+.+-||.+ ++.|.++|+.||
T Consensus 639 pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw 718 (730)
T COG0376 639 PGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAW 718 (730)
T ss_pred cccccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 7778888888887521 1 136677777889999999999986 799999999999
Q ss_pred HHHHcCC
Q 036989 294 EKMGSIG 300 (318)
Q Consensus 294 ~Km~~lg 300 (318)
.|..++.
T Consensus 719 ~kVMn~D 725 (730)
T COG0376 719 TKVMNLD 725 (730)
T ss_pred HHHhccc
Confidence 9999875
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=77.10 E-value=1.6 Score=33.49 Aligned_cols=29 Identities=38% Similarity=0.524 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHcCCccCCCCCccccccCCCC
Q 036989 284 KFFQAFAVAMEKMGSIGVKRGRKHGEKRKDCSMH 317 (318)
Q Consensus 284 ~F~~~Fa~Am~Km~~lgv~tg~~~GeiR~~C~~~ 317 (318)
.....|..||.||+.||..... --+||.|
T Consensus 2 ~m~~~F~~am~KlavLG~d~~~-----LiDCSdV 30 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHDRSD-----LIDCSDV 30 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-GGG-----SEE-GGG
T ss_pred hHHHHHHHHHHHHHHhcCChhh-----cccchhh
Confidence 3567899999999999975432 3456655
No 20
>PTZ00411 transaldolase-like protein; Provisional
Probab=74.87 E-value=35 Score=33.20 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=36.6
Q ss_pred cCHHHHHHHhhHHHHH--hcCCCccccccCccCCCCcccCCCCCCCCCC---CCCHHHHHHHHHHCCCCcc
Q 036989 110 VSCADILAIAARDYVH--LAGGPYYQVKKGRWDGKISMASRVPFNLPRA---NSTIDQIIKIFNAKGLTIE 175 (318)
Q Consensus 110 VScADilalAa~~AV~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~Gl~~~ 175 (318)
|.|-=.+.++...|+. .+|-..+..+.||.+-+.-.+.......+.. -..+.++.++|+..|+.++
T Consensus 161 I~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~ 231 (333)
T PTZ00411 161 IHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTI 231 (333)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeE
Confidence 3333333444444433 4688889999999976532211111111211 2346778888989998653
No 21
>PRK05269 transaldolase B; Provisional
Probab=57.45 E-value=95 Score=30.00 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=39.3
Q ss_pred cCHHHHHHHhhHHHHH--hcCCCccccccCccCCCCcccCCCCCCC---CCCCCCHHHHHHHHHHCCCCccccc
Q 036989 110 VSCADILAIAARDYVH--LAGGPYYQVKKGRWDGKISMASRVPFNL---PRANSTIDQIIKIFNAKGLTIEDMV 178 (318)
Q Consensus 110 VScADilalAa~~AV~--~~GGP~~~v~~GR~D~~~s~~~~~~~~l---P~p~~~~~~l~~~F~~~Gl~~~e~V 178 (318)
|+|-=.+.++...|+. .+|-..+..+.||.|...-...+....- -++...+.++..+|++.|+..+-|.
T Consensus 151 I~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ 224 (318)
T PRK05269 151 INCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMG 224 (318)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEe
Confidence 3333334444443333 4688889999999986532211100011 1133457888889999999876443
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=34.61 E-value=2.5e+02 Score=27.18 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=71.8
Q ss_pred HHHhhHHHH--HhcCCCccccccCccCCCCcccCCCCCCCC----CCCCCHHHHHHHHHHCCCCccccccccccceeccc
Q 036989 116 LAIAARDYV--HLAGGPYYQVKKGRWDGKISMASRVPFNLP----RANSTIDQIIKIFNAKGLTIEDMVVLSGAHTIGFA 189 (318)
Q Consensus 116 lalAa~~AV--~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP----~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHtiG~~ 189 (318)
+.|+...|+ ..+|-..+..+.||.|-+........ ..+ ++...+.++.++|++.|+..+=|.|=. .+++.+
T Consensus 155 liFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~-~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASf--Rn~~qv 231 (317)
T TIGR00874 155 LLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKK-EYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASF--RNKEEI 231 (317)
T ss_pred eecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCcc-ccccccCchHHHHHHHHHHHHHcCCCcEEEeecc--CCHHHH
Confidence 344444333 34688899999999987533211100 111 233457788889999998765443311 112221
Q ss_pred cccccccccccCCCCCCCC-CCCCHHHHHHHHhhCCCCCCC--CCcccCCCCCCCcccchhHHHHhhccccccchhhhhc
Q 036989 190 HCEHFVSRLYDYRGTKQPD-PAIDPRLLRALRMACPHFGGN--TDIVAPFDVTTPFLFDHAYYANLEGKLGLLASDQVLF 266 (318)
Q Consensus 190 hc~~f~~Rl~~f~g~~~~d-p~~~~~~~~~L~~~Cp~~~~~--~~~~~~~D~~tp~~fDn~Yy~~l~~~~glL~sD~~L~ 266 (318)
.. + .| .| =+++|...++|...-..-... .......+ ..|..+|...|+..+...++
T Consensus 232 ~~------l---aG---~d~~Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~-~~~~~~~e~~fr~~~~~d~m-------- 290 (317)
T TIGR00874 232 LA------L---AG---CDRLTISPALLDELKESTGPVERKLDPESAKKVD-KQPIILDESEFRFLHNEDAM-------- 290 (317)
T ss_pred HH------H---HC---CCeEeCCHHHHHHHHhCCCCcCccCCcccccccc-ccCCCCCHHHHHHHhCCCcc--------
Confidence 11 1 11 11 257788888776532100000 00000011 23456788888754433221
Q ss_pred CChhhHHHHHHHhhhHHHHHH
Q 036989 267 LDPRTKSLVQELGKDKQKFFQ 287 (318)
Q Consensus 267 ~d~~t~~~v~~yA~d~~~F~~ 287 (318)
.-.....-++.|+.|+.....
T Consensus 291 a~ekl~~gir~F~~d~~~Le~ 311 (317)
T TIGR00874 291 ATEKLAEGIRKFAADQEKLEK 311 (317)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 112234456777777665443
No 23
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=32.85 E-value=5.1e+02 Score=25.81 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=39.3
Q ss_pred cCHHHHHHHhhHHHHH--hcCCCccccccCccCCCCcccCCCCCCCCCCC----CCHHHHHHHHHHCCCCcc
Q 036989 110 VSCADILAIAARDYVH--LAGGPYYQVKKGRWDGKISMASRVPFNLPRAN----STIDQIIKIFNAKGLTIE 175 (318)
Q Consensus 110 VScADilalAa~~AV~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~----~~~~~l~~~F~~~Gl~~~ 175 (318)
|.|-=.+.++...|+. .+|-..+..+.||.|-+.-.... ...+|... ..+.++..+|+..|+.++
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g-~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~ 225 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETG-RDSYPGAEDPGVQSVTQIYNYYKKFGYKTE 225 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccC-CCccccccchHHHHHHHHHHHHHhcCCCcE
Confidence 4444444555544443 46888999999999885433211 11244332 247778888989898654
No 24
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=31.00 E-value=2.1e+02 Score=27.55 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=40.5
Q ss_pred ccCHHHHHHHhhHHHHH--hcCCCccccccCccCCCCcccCCCCCCCCC----CCCCHHHHHHHHHHCCCCcccccc
Q 036989 109 VVSCADILAIAARDYVH--LAGGPYYQVKKGRWDGKISMASRVPFNLPR----ANSTIDQIIKIFNAKGLTIEDMVV 179 (318)
Q Consensus 109 ~VScADilalAa~~AV~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~~e~Va 179 (318)
.|+|-=.+.++...|+. .+|-..+..+.||.|-+.-...... ..+. +...+.++.++|++.|+.++-|.|
T Consensus 148 GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~-~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaA 223 (313)
T cd00957 148 GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDK-AYTAEEDPGVASVKKIYNYYKKFGYKTKVMGA 223 (313)
T ss_pred CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccc-cCCccCCcHHHHHHHHHHHHHHcCCCcEEEec
Confidence 34444444555554443 4577888999999986532211100 1111 223477888899999997654433
No 25
>PRK12346 transaldolase A; Provisional
Probab=29.25 E-value=3.7e+02 Score=26.02 Aligned_cols=67 Identities=10% Similarity=-0.039 Sum_probs=40.2
Q ss_pred ccCHHHHHHHhhHHHHH--hcCCCccccccCccCCCCcccCCCCCCCCC----CCCCHHHHHHHHHHCCCCccc
Q 036989 109 VVSCADILAIAARDYVH--LAGGPYYQVKKGRWDGKISMASRVPFNLPR----ANSTIDQIIKIFNAKGLTIED 176 (318)
Q Consensus 109 ~VScADilalAa~~AV~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~~e 176 (318)
.|+|-=.+.|+...|+. .+|-..+..+.||.|-+...... ...++. +...+.++.++|++.|+.++=
T Consensus 149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~-~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~V 221 (316)
T PRK12346 149 GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKP-MDPYVVEEDPGVKSVRNIYDYYKQHRYETIV 221 (316)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccc-cccccccCCChHHHHHHHHHHHHHcCCCcEE
Confidence 34444445555555544 46888999999999876432111 111221 223467788889888986543
No 26
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=24.97 E-value=48 Score=27.99 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHCCCCcccccccc-ccceecccc
Q 036989 158 STIDQIIKIFNAKGLTIEDMVVLS-GAHTIGFAH 190 (318)
Q Consensus 158 ~~~~~l~~~F~~~Gl~~~e~VaLs-GaHtiG~~h 190 (318)
+++.+.+-.|+++||++.++-+++ -+|-||+++
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 456667778999999999986665 599999876
No 27
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=21.69 E-value=41 Score=26.84 Aligned_cols=14 Identities=50% Similarity=1.474 Sum_probs=9.5
Q ss_pred hcccccccCCCceEe
Q 036989 52 FFHDCFVEGCDGSIL 66 (318)
Q Consensus 52 ~FHDc~v~GcDgSil 66 (318)
.+|+|| +||.|+..
T Consensus 4 V~HeC~-g~c~G~f~ 17 (96)
T PF08782_consen 4 VYHECF-GGCRGSFI 17 (96)
T ss_dssp EEE-ST-T-EEEEE-
T ss_pred eEEeec-CccceEec
Confidence 479998 88999986
No 28
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=20.62 E-value=37 Score=26.16 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=18.4
Q ss_pred HHHHHHHHHHCCCCccccccccccc
Q 036989 160 IDQIIKIFNAKGLTIEDMVVLSGAH 184 (318)
Q Consensus 160 ~~~l~~~F~~~Gl~~~e~VaLsGaH 184 (318)
.++|..+|.+.||+..||-.|+-+.
T Consensus 10 GDtLs~iF~~~gls~~dl~~v~~~~ 34 (85)
T PF04225_consen 10 GDTLSTIFRRAGLSASDLYAVLEAD 34 (85)
T ss_dssp T--HHHHHHHTT--HHHHHHHHHHG
T ss_pred CCcHHHHHHHcCCCHHHHHHHHhcc
Confidence 4678899999999999999998655
No 29
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=20.56 E-value=59 Score=25.30 Aligned_cols=19 Identities=32% Similarity=0.523 Sum_probs=15.4
Q ss_pred HhhhHHHHHHHHHHHHHHH
Q 036989 278 LGKDKQKFFQAFAVAMEKM 296 (318)
Q Consensus 278 yA~d~~~F~~~Fa~Am~Km 296 (318)
|-..|+.||+.|+..+.|=
T Consensus 38 Y~~~QskFFe~~A~~~tkR 56 (90)
T PLN00017 38 YNPLQSKFFETFAAPFTKR 56 (90)
T ss_pred CChHHHHHHHHHhhhhhHH
Confidence 5567899999999887763
Done!