BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036990
         (457 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KUI|A Chain A, Nmr Structure Of The Pasta Domain Of Mycobacterium
           Tuberculo Pknb
          Length = 275

 Score = 35.0 bits (79), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 21/127 (16%)

Query: 311 GYLILNTETQIPEEIRGKMQDACINMSSEAVKALKELAFSIKTMTKPCSA--DSHITKSK 368
           G++ +  + Q+P+ +RG+        S++A+  L+   F I+T+ KP S     H+  + 
Sbjct: 1   GHMGITRDVQVPD-VRGQS-------SADAIATLQNRGFKIRTLQKPDSTIPPDHVIGTD 52

Query: 369 IAAKNLKSLLSTSLCKETEISEVMQAITVVSLLVDVVACTKKIAESVQEL--ASFAKFKS 426
            AA       +TS+    EI+  +        + DV   T   AE+V++L  A F +FK 
Sbjct: 53  PAA-------NTSVSAGDEITVNVSTGPEQREIPDVSTLT--YAEAVKKLTAAGFGRFKQ 103

Query: 427 EKPKQAP 433
                 P
Sbjct: 104 ANSPSTP 110


>pdb|2KUD|A Chain A, Nmr Structure Of The Pasta Domain 1 And 2 Of Mycobacterium
           Tuberculosis Of Pknb
          Length = 140

 Score = 32.7 bits (73), Expect = 0.41,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 21/127 (16%)

Query: 311 GYLILNTETQIPEEIRGKMQDACINMSSEAVKALKELAFSIKTMTKPCSA--DSHITKSK 368
           G++ +  + Q+P+ +RG+        S++A+  L+   F I+T+ KP S     H+  + 
Sbjct: 1   GHMGITRDVQVPD-VRGQS-------SADAIATLQNRGFKIRTLQKPDSTIPPDHVIGTD 52

Query: 369 IAAKNLKSLLSTSLCKETEISEVMQAITVVSLLVDVVACTKKIAESVQEL--ASFAKFKS 426
            AA       +TS+    EI+  +        + DV   T   AE+V++L  A F +FK 
Sbjct: 53  PAA-------NTSVSAGDEITVNVSTGPEQREIPDVSTLT--YAEAVKKLTAAGFGRFKQ 103

Query: 427 EKPKQAP 433
                 P
Sbjct: 104 ANSPSTP 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,363,983
Number of Sequences: 62578
Number of extensions: 394531
Number of successful extensions: 775
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 4
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)