Query 036990
Match_columns 457
No_of_seqs 325 out of 1752
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:28:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 6.5E-74 1.4E-78 580.6 40.5 377 41-419 1-406 (406)
2 KOG4711 Predicted membrane pro 100.0 1.9E-47 4.1E-52 400.9 20.1 350 27-379 69-437 (625)
3 TIGR01666 YCCS hypothetical me 100.0 2.2E-27 4.8E-32 257.3 39.7 307 34-380 364-671 (704)
4 TIGR01667 YCCS_YHJK integral m 100.0 2.5E-27 5.4E-32 257.7 38.2 283 34-350 366-649 (701)
5 PF04632 FUSC: Fusaric acid re 100.0 3.3E-26 7.2E-31 250.5 36.3 238 50-313 1-239 (650)
6 PRK10631 p-hydroxybenzoic acid 99.9 2E-25 4.3E-30 239.0 31.3 218 45-282 3-230 (652)
7 PRK11427 multidrug efflux syst 99.9 5.5E-21 1.2E-25 203.7 31.2 235 44-301 344-579 (683)
8 COG1289 Predicted membrane pro 99.8 1.6E-17 3.5E-22 182.4 27.8 243 40-313 344-587 (674)
9 COG4129 Predicted membrane pro 99.8 1E-15 2.2E-20 152.3 29.9 162 52-236 11-172 (332)
10 PRK11427 multidrug efflux syst 99.7 3.1E-15 6.7E-20 160.0 31.7 170 47-234 26-202 (683)
11 PF10334 DUF2421: Protein of u 99.6 8.2E-14 1.8E-18 133.3 21.3 208 209-422 1-228 (229)
12 PF06081 DUF939: Bacterial pro 99.6 3.7E-14 8E-19 125.3 16.0 137 52-209 5-141 (141)
13 COG1289 Predicted membrane pro 99.6 3.3E-12 7.1E-17 140.6 34.6 218 45-282 5-225 (674)
14 PF13515 FUSC_2: Fusaric acid 99.6 2.2E-14 4.8E-19 124.3 13.1 116 76-205 10-128 (128)
15 PF10337 DUF2422: Protein of u 99.4 6.4E-10 1.4E-14 117.2 35.0 259 45-311 10-314 (459)
16 PF04632 FUSC: Fusaric acid re 99.2 2.6E-08 5.7E-13 109.5 32.5 175 49-234 338-514 (650)
17 PF12805 FUSC-like: FUSC-like 99.0 4.7E-07 1E-11 89.5 28.7 222 132-379 22-253 (284)
18 TIGR01667 YCCS_YHJK integral m 98.8 9.4E-06 2E-10 89.5 32.1 294 49-379 6-309 (701)
19 TIGR01666 YCCS hypothetical me 98.8 2.2E-05 4.8E-10 86.4 33.8 176 49-243 6-183 (704)
20 PRK10631 p-hydroxybenzoic acid 97.9 0.02 4.3E-07 62.7 30.1 164 51-226 353-518 (652)
21 PF11168 DUF2955: Protein of u 96.1 0.29 6.4E-06 43.1 14.7 136 54-208 2-139 (140)
22 PF12732 YtxH: YtxH-like prote 84.7 4.7 0.0001 31.2 6.8 44 193-237 3-46 (74)
23 TIGR02865 spore_II_E stage II 78.5 1.3E+02 0.0027 34.3 23.1 121 104-240 189-330 (764)
24 COG4980 GvpP Gas vesicle prote 71.2 18 0.00038 30.7 6.7 44 192-236 8-51 (115)
25 PRK11677 hypothetical protein; 70.0 19 0.00042 31.4 7.0 45 193-237 8-53 (134)
26 PF06496 DUF1097: Protein of u 68.7 82 0.0018 27.6 14.0 71 80-152 20-90 (144)
27 PF06081 DUF939: Bacterial pro 67.6 20 0.00044 31.4 6.8 39 82-121 100-138 (141)
28 COG5336 Uncharacterized protei 67.1 35 0.00077 28.5 7.5 24 101-124 47-70 (116)
29 PF10011 DUF2254: Predicted me 64.5 1.3E+02 0.0028 30.9 13.0 19 102-120 45-63 (371)
30 PRK12821 aspartyl/glutamyl-tRN 61.8 1.6E+02 0.0034 31.1 12.7 36 92-127 93-128 (477)
31 PF11744 ALMT: Aluminium activ 54.4 55 0.0012 34.1 8.2 41 166-208 43-83 (406)
32 PF06295 DUF1043: Protein of u 53.8 59 0.0013 28.0 7.1 44 193-236 4-48 (128)
33 PF12841 YvrJ: YvrJ protein fa 50.7 45 0.00097 22.5 4.5 29 392-420 8-36 (38)
34 TIGR02135 phoU_full phosphate 46.3 2.3E+02 0.0049 25.7 14.7 61 290-354 79-139 (212)
35 PRK09776 putative diguanylate 44.9 3.5E+02 0.0077 31.5 14.0 10 108-117 47-56 (1092)
36 PF13515 FUSC_2: Fusaric acid 43.0 62 0.0013 27.0 5.6 41 169-212 19-59 (128)
37 PRK10263 DNA translocase FtsK; 40.7 7.5E+02 0.016 30.0 15.7 14 96-109 67-80 (1355)
38 PF06123 CreD: Inner membrane 39.1 1.5E+02 0.0033 31.2 8.6 27 80-106 353-379 (430)
39 PRK11715 inner membrane protei 37.7 1.5E+02 0.0032 31.3 8.3 14 50-63 299-312 (436)
40 PF04982 HPP: HPP family; Int 36.8 2.6E+02 0.0057 23.7 12.5 60 83-149 6-65 (120)
41 PF04286 DUF445: Protein of un 35.8 27 0.00059 35.2 2.6 20 104-123 344-363 (367)
42 PRK11103 PTS system mannose-sp 35.2 2.7E+02 0.0059 27.5 9.3 29 184-213 187-215 (282)
43 COG4239 ABC-type uncharacteriz 35.1 2.2E+02 0.0048 28.1 8.3 62 49-124 134-196 (341)
44 PRK09400 secE preprotein trans 33.9 1.6E+02 0.0035 22.0 5.7 46 25-70 6-52 (61)
45 PRK09855 PTS system N-acetylga 33.1 2.3E+02 0.005 27.7 8.3 101 91-213 98-200 (263)
46 PF15225 IL32: Interleukin 32 32.9 61 0.0013 26.0 3.5 30 9-38 34-63 (104)
47 COG5547 Small integral membran 32.6 2E+02 0.0042 21.3 5.7 24 100-123 4-27 (62)
48 TIGR00828 EIID-AGA PTS system, 32.1 3.4E+02 0.0073 26.7 9.3 29 184-213 177-205 (271)
49 PF03613 EIID-AGA: PTS system 30.8 4.5E+02 0.0098 25.7 10.0 27 185-212 176-202 (264)
50 COG2211 MelB Na+/melibiose sym 30.5 6.5E+02 0.014 26.8 11.8 37 94-130 142-179 (467)
51 PLN00064 photosystem II protei 29.5 4.2E+02 0.0092 23.8 12.0 41 290-336 118-158 (166)
52 PF10066 DUF2304: Uncharacteri 27.4 3.7E+02 0.008 22.5 7.9 16 190-205 63-78 (115)
53 PF07155 ECF-ribofla_trS: ECF- 27.2 4.4E+02 0.0095 23.3 9.9 20 107-126 48-67 (169)
54 TIGR03044 PS_II_psb27 photosys 26.8 4.3E+02 0.0094 23.1 13.3 40 290-336 89-128 (135)
55 PF05478 Prominin: Prominin; 26.8 1E+03 0.022 27.3 19.1 41 194-236 152-192 (806)
56 PF10112 Halogen_Hydrol: 5-bro 26.7 1.2E+02 0.0026 28.0 5.1 18 104-121 5-22 (199)
57 COG4980 GvpP Gas vesicle prote 26.6 64 0.0014 27.4 2.8 17 107-123 8-24 (115)
58 PF10031 DUF2273: Small integr 26.3 2.5E+02 0.0054 20.1 5.7 18 104-121 8-25 (51)
59 PF10337 DUF2422: Protein of u 26.2 7.8E+02 0.017 25.9 12.9 69 52-120 13-82 (459)
60 PHA02102 hypothetical protein 25.0 1.1E+02 0.0023 23.1 3.3 26 401-426 7-32 (72)
61 PF12805 FUSC-like: FUSC-like 24.4 6.6E+02 0.014 24.4 23.9 19 295-313 211-229 (284)
62 TIGR03480 HpnN hopanoid biosyn 23.7 7.1E+02 0.015 28.6 11.6 20 193-212 835-854 (862)
63 PF10779 XhlA: Haemolysin XhlA 23.7 1.5E+02 0.0032 22.6 4.2 17 106-122 52-68 (71)
64 PRK11660 putative transporter; 23.5 3.7E+02 0.008 29.3 8.8 16 193-208 424-439 (568)
65 COG4041 Predicted membrane pro 23.4 2.1E+02 0.0045 24.9 5.3 29 52-80 7-35 (171)
66 COG0659 SUL1 Sulfate permease 23.1 3.8E+02 0.0081 29.3 8.6 17 192-208 392-408 (554)
67 COG3105 Uncharacterized protei 22.8 5.1E+02 0.011 22.5 8.1 43 193-236 13-57 (138)
68 KOG1172 Na+-independent Cl/HCO 22.8 4.7E+02 0.01 30.0 9.3 41 166-206 450-490 (876)
69 TIGR00400 mgtE Mg2+ transporte 22.8 7.9E+02 0.017 25.8 10.9 17 108-124 361-377 (449)
70 KOG4331 Polytopic membrane pro 22.5 1.1E+03 0.025 26.9 12.0 42 191-235 162-204 (865)
71 COG3781 Predicted membrane pro 22.5 7.5E+02 0.016 24.3 11.1 40 275-314 132-171 (306)
72 PF03419 Peptidase_U4: Sporula 22.4 3.7E+02 0.008 26.5 7.9 17 104-120 34-50 (293)
73 COG2733 Predicted membrane pro 22.0 40 0.00088 34.6 0.9 19 105-123 392-410 (415)
74 COG1392 Phosphate transport re 21.2 7.1E+02 0.015 23.5 18.3 46 285-331 75-120 (217)
75 PF05433 Rick_17kDa_Anti: Glyc 21.0 51 0.0011 22.7 1.0 13 109-121 2-14 (42)
76 COG4956 Integral membrane prot 21.0 8.7E+02 0.019 24.5 11.0 20 102-121 3-22 (356)
77 COG5001 Predicted signal trans 21.0 2.6E+02 0.0056 29.4 6.3 99 97-207 93-197 (663)
78 PF08893 DUF1839: Domain of un 20.0 2.9E+02 0.0064 27.6 6.3 50 329-379 268-317 (319)
79 TIGR00930 2a30 K-Cl cotranspor 20.0 1.4E+03 0.031 26.7 13.8 28 93-121 139-166 (953)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=6.5e-74 Score=580.59 Aligned_cols=377 Identities=55% Similarity=0.931 Sum_probs=358.4
Q ss_pred HhcCcCCcchHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 036990 41 KRLGREDPRRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGA 120 (457)
Q Consensus 41 ~~~~~~d~~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~ 120 (457)
|+.+++||+++.|++|+|+|+++++++++..+.|.+++.+++||++|+++|++||+|+|+.||++|++||++||++|+++
T Consensus 1 w~~g~~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~ 80 (406)
T PF11744_consen 1 WKFGKDDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGV 80 (406)
T ss_pred CcccccCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q 036990 121 HHLASLPGEKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSAYHDDEVMRIAYERVITILIGIF 200 (457)
Q Consensus 121 ~~l~~~~g~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~~~~~~~~~~a~~R~~~i~iG~~ 200 (457)
.+++...|+..+++++++.+|+++++.+|.|++|.+|+||+||+.+|++|+++|.+++++.++.+.++..|+..|++|++
T Consensus 81 ~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~ 160 (406)
T PF11744_consen 81 SWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVA 160 (406)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHH
Confidence 99988888767899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhHHHhccccCC------CcchhhHHhHHHHHhhhhhHHHHhhhh
Q 036990 201 TALFVCIFICPVWAGDDLHSLVANNIDKLANFFEAFVPLYLKISQEG------EPEMTFLEGYKCVLNSKQTEESLANFA 274 (457)
Q Consensus 201 ia~lv~~~i~P~~a~~~l~~~l~~~l~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~r~~L~~~~~~~~l~~~a 274 (457)
+++++|.++||.|++++||+.++++++++++.+++|+++|++..+++ ..+++.+++||+.|+++.++|+|++++
T Consensus 161 i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A 240 (406)
T PF11744_consen 161 ICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFA 240 (406)
T ss_pred HHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhh
Confidence 99999999999999999999999999999999999999999876544 235678999999999999999999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 036990 275 GWEPGHGKFRFRHPWKKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDACINMSSEAVKALKELAFSIKTM 354 (457)
Q Consensus 275 ~~Ep~~~~~~~~~p~~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~al~~~ 354 (457)
+|||+||+|++++||++|.++++.+|+|++.+++|++|+ ++++|.|++++..++++|.+++.++.++|++++.++++|
T Consensus 241 ~WEP~HG~f~f~~Pw~~Y~kig~~lR~cay~v~AL~gcl--~seiq~p~~~r~~~~~~~~~~~~e~~kvLrel~~~ik~m 318 (406)
T PF11744_consen 241 RWEPPHGRFRFRHPWKQYLKIGALLRHCAYCVEALHGCL--NSEIQAPPELRQKFQEECTRVSSESAKVLRELSNSIKTM 318 (406)
T ss_pred hhcccccCCccCCcHHHHHHHHHHHHHHHHHHHHHHhcc--cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHhccc-----------------------CCCchHHHHhHHHHHHHHHHHHHHHHHHH
Q 036990 355 TKPCSADSHITKSKIAAKNLKSLLSTSL-----------------------CKETEISEVMQAITVVSLLVDVVACTKKI 411 (457)
Q Consensus 355 ~~~~~~~~~~~~~~~a~~~L~~~l~~~~-----------------------~~~~~~~~~~~~~~~as~l~e~~~~le~l 411 (457)
+++++.+.++.+++.|+++|+..+++.+ +++.+..+.+++++|+|+|+|+++|+|++
T Consensus 319 ~~~~~~~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~lat~aSlLie~v~r~~~i 398 (406)
T PF11744_consen 319 TKSSSIDDHVANLKEAAEDLQSKLDSQSYLLLNSESPERSFLRPQSSKEAEWTSYELLEALPLATFASLLIEFVARLENI 398 (406)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhCCccccCCchhhhhhccccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9998656779999999999999997655 45567889999999999999999999999
Q ss_pred HHHHHHHH
Q 036990 412 AESVQELA 419 (457)
Q Consensus 412 ~~~v~~L~ 419 (457)
+|+|+||+
T Consensus 399 v~~v~eLa 406 (406)
T PF11744_consen 399 VEAVEELA 406 (406)
T ss_pred HHHHHhhC
Confidence 99999995
No 2
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=1.9e-47 Score=400.89 Aligned_cols=350 Identities=44% Similarity=0.784 Sum_probs=319.9
Q ss_pred HHHHHHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccChhHHHHHHHHH
Q 036990 27 GKLMAKLVEFAKKTKRLGREDPRRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFSVGGTLSRGLNR 106 (457)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~d~~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~R 106 (457)
.+.-+|+.++.+..|+.+..||++..|++|+++|++|++.+++..+.+.+++.++.|+++|+++|+++++|+|+.|+++|
T Consensus 69 ~~~~~kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~kglnr 148 (625)
T KOG4711|consen 69 LELSAKVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSKGLNR 148 (625)
T ss_pred cchHHHHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHHhHHH
Confidence 34457999999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCChHHHH
Q 036990 107 GLATFLASALGFGAHHLASLPGEKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSAYHDDEVMR 186 (457)
Q Consensus 107 i~GTliG~~lg~~~~~l~~~~g~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~~~~~~~~~ 186 (457)
.+||+.++.+|+.+.++...+|...+++.++..+|+.++.++|++++|.+|+ |+|+.++|.+|++++.+++++.+.+++
T Consensus 149 ~v~tL~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~-y~y~~lIf~ltf~l~~vs~~r~~~~~~ 227 (625)
T KOG4711|consen 149 AVGTLSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKA-YEYGFLIFILTFCLVEVSGYRSDYFLE 227 (625)
T ss_pred HHHHhhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhc-cchhhhHHHHHhhhheecccchhHHHH
Confidence 9999999999999999988888656788899999999999999999999998 999999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH-------HhHHHhccc--cC------CC--c
Q 036990 187 IAYERVITILIGIFTALFVCIFICPVWAGDDLHSLVANNIDKLANFFEA-------FVPLYLKIS--QE------GE--P 249 (457)
Q Consensus 187 ~a~~R~~~i~iG~~ia~lv~~~i~P~~a~~~l~~~l~~~l~~~~~~l~~-------~~~~~~~~~--~~------~~--~ 249 (457)
.+..|+..|.+|..++++++.|+||.|+++++|+..++.++.++.++++ +..+|+... +. .+ .
T Consensus 228 ~a~~Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~~~~y~~~~~i~~~s~~~~~~s~~ 307 (625)
T KOG4711|consen 228 LALQRLLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCFNGEYFCVEKIEILSIPTFYKSAA 307 (625)
T ss_pred HHHHHHHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhhcchheeehhhhhcchhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999995 445555432 11 00 1
Q ss_pred chhhHHhHHHHHhhhhhHHHHhhhhcCCCCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHH
Q 036990 250 EMTFLEGYKCVLNSKQTEESLANFAGWEPGHG-KFRFRHPWKKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGK 328 (457)
Q Consensus 250 ~~~~~~~~r~~L~~~~~~~~l~~~a~~Ep~~~-~~~~~~p~~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~ 328 (457)
.++.+++|++.|+++.+++.+.+|+.|||+|| .+++++||+.|.++...+|+|+..+++||+|+ ..+.|+|.+++..
T Consensus 308 ~~~~~~Gy~svl~s~s~ee~l~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r~ca~~i~alh~~l--~s~~qap~~~~~~ 385 (625)
T KOG4711|consen 308 WYPLYNGYWSVLQSKSQEERLANFAIWEPPHGPYFTFRHPWKNYVKLGGALRQCAFIIMALHGCL--LSEIQAPRDLRNK 385 (625)
T ss_pred hhhhhcchhHHhhhhhHHHHHHHHheecCCCCCceeeecchhHeeehhhHHHHHHHHHHHhcccc--cccccCcHHHHHH
Confidence 34577899999999999999999999999999 67799999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCC-CccchHHHHHHHHHHHHHh
Q 036990 329 MQDACINMSSEAVKALKELAFSIKTMTKPCSA-DSHITKSKIAAKNLKSLLS 379 (457)
Q Consensus 329 ~~~~~~~l~~~~~~~L~~La~al~~~~~~~~~-~~~~~~~~~a~~~L~~~l~ 379 (457)
+..++.+++.++.++++.++.+++.|.++++. +.+....+.|.+.|+..+.
T Consensus 386 ~~~~l~rva~e~~kvl~~~~~~~~~~~~~s~~~~~~~~~~~~A~~~L~~~id 437 (625)
T KOG4711|consen 386 FRLTLRRVAIEISKVLRPFRAKVELMYKLSSALDILLQYVTVADRELQRNID 437 (625)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999862 6667788888888888654
No 3
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.97 E-value=2.2e-27 Score=257.26 Aligned_cols=307 Identities=15% Similarity=0.150 Sum_probs=210.5
Q ss_pred HHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHH
Q 036990 34 VEFAKKTKRLGREDPRRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLA 113 (457)
Q Consensus 34 ~~~~~~~~~~~~~d~~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG 113 (457)
.++++.+++....|+..++||+|++++++++++++. .++++ ||||+++|+++|++|+.|+|..|+.+|++||++|
T Consensus 364 ~~~~~~l~~~l~~~S~~fRhAlRlalal~~a~~i~~----~l~l~-~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG 438 (704)
T TIGR01666 364 KNIWARIFSHFTFESPLFRHAVRLSIVLFLGYAIIQ----FFGFN-LGYWILLTTLFVCQPNYSATKVRLRQRIIGTLLG 438 (704)
T ss_pred hHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH----HhCCC-CCchHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999999999988764 34455 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 036990 114 SALGFGAHHLASLPGEKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSAYHDDEVMRIAYERVI 193 (457)
Q Consensus 114 ~~lg~~~~~l~~~~g~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~~~~~~~~~~a~~R~~ 193 (457)
+++|.++.++. ++ ....+.+++ +.+. .++.+ ...||.++ ++++|..++++....+ +.++++..|++
T Consensus 439 ~~lg~~ll~l~--p~---~~~~l~liv-~~~~--l~~~~---~~~~Y~~a--~~fiT~~vll~~~l~g-~~~~~~~~Rl~ 504 (704)
T TIGR01666 439 VVIGSPLLYFN--PS---LELQLVLVV-LTGV--LFFAF---RSNNYSFA--TFFITLLVLLCFNVLG-EGAAVLLPRLL 504 (704)
T ss_pred HHHHHHHHHHh--cc---HHHHHHHHH-HHHH--HHHHH---HHHhHHHH--HHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence 99999987663 21 111121211 1111 22111 23455444 4557776665444322 35678999999
Q ss_pred HHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhHHHhccccCCCcchhhHH-hHHHHHhhhhhHHHHhh
Q 036990 194 TILIGIFTALFVCIFICPVWAGDDLHSLVANNIDKLANFFEAFVPLYLKISQEGEPEMTFLE-GYKCVLNSKQTEESLAN 272 (457)
Q Consensus 194 ~i~iG~~ia~lv~~~i~P~~a~~~l~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~r~~L~~~~~~~~l~~ 272 (457)
+|+|||++|+++++++||.|.++++++.+++.++..++|++.+++.|..++.++ ..++ ..|+.-+..+..++..+
T Consensus 505 dTlIG~~iAl~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g~~~~----~~yr~aRR~a~~~~a~l~~~~~ 580 (704)
T TIGR01666 505 DTLIGCAIAWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHIISQYQFGKSDD----LKYRIARRNAHNYDAALSTTVS 580 (704)
T ss_pred HHHHHHHHHHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCcch----hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988876654331 1111 11222122222333333
Q ss_pred hhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 036990 273 FAGWEPGHGKFRFRHPWKKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDACINMSSEAVKALKELAFSIK 352 (457)
Q Consensus 273 ~a~~Ep~~~~~~~~~p~~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~al~ 352 (457)
-+..||++.+ ..++...+++..++.+++++.+|+.+- +... .+++. ..+++...++.+.|..+.....
T Consensus 581 ~m~~EP~~~~----~~~~~~~~ll~~~~~llsyisaLg~~r---~~~~-~~~~~----~~~~~~~~~~~~~l~~~~~~~~ 648 (704)
T TIGR01666 581 NMNNEPVKYK----AYLQKGFRLLKLNHSLLSYISALGAHR---DRLK-NLQQT----AQFLDGFYPVAKKLIYTLEHIE 648 (704)
T ss_pred HHHhCCCcch----hhHHHHHHHHHHHHHHHHHHHHHHhCH---hhCC-ChHHH----HHHHHHHHHHHHHHHHHhhccc
Confidence 3346998876 467888899999999999999998763 1111 22333 3344455566666666666554
Q ss_pred hcCCCCCCCccchHHHHHHHHHHHHHhc
Q 036990 353 TMTKPCSADSHITKSKIAAKNLKSLLST 380 (457)
Q Consensus 353 ~~~~~~~~~~~~~~~~~a~~~L~~~l~~ 380 (457)
... + .-..+.....++|...+..
T Consensus 649 ~~~----~-~~~~~~~~~~~~~~~~l~~ 671 (704)
T TIGR01666 649 EIP----E-AIFNQQQESIETLELRKQE 671 (704)
T ss_pred ccc----c-chhhhHHHHHHHHHHHHhh
Confidence 211 0 0012445566667777654
No 4
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.97 E-value=2.5e-27 Score=257.68 Aligned_cols=283 Identities=16% Similarity=0.195 Sum_probs=200.0
Q ss_pred HHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHH
Q 036990 34 VEFAKKTKRLGREDPRRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLA 113 (457)
Q Consensus 34 ~~~~~~~~~~~~~d~~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG 113 (457)
.+++..+++....|+..++||+|++++++++..+... ++++ +|||+++|+++|++|+.|+|..|+++|++||++|
T Consensus 366 ~~~~~~l~~~l~~~S~~fRhAlR~ala~~~a~~i~~~----l~l~-~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~G 440 (701)
T TIGR01667 366 KDILPRLKSHLTPESPLFRHAVRLSLVVMLGYAILMG----TALH-LGYWILLTTLFVCQPNYGATRLRLVQRIIGTVVG 440 (701)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH----hCCC-cchHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999999999999887643 3455 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 036990 114 SALGFGAHHLASLPGEKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSAYHDDEVMRIAYERVI 193 (457)
Q Consensus 114 ~~lg~~~~~l~~~~g~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~~~~~~~~~~a~~R~~ 193 (457)
+++|+++.++. ++ + ...+.+++ ++++++.++ .+.| |+..++++|..+++.......+.++++..|++
T Consensus 441 ~llg~~l~~l~--p~--~-~~~l~l~v-~~~~~~~~~-----~~~~--Y~~a~~fiT~~vll~~~l~~~~~~~~a~~Rl~ 507 (701)
T TIGR01667 441 LVIGVALHFLI--PS--L-EGQLTLMV-ITGVAFFAF-----RSKN--YGWATVFITLLVLLCFNLLGLDGEQYILPRLI 507 (701)
T ss_pred HHHHHHHHHHc--Cc--H-HHHHHHHH-HHHHHHHHH-----HHhh--HHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence 99999876552 21 1 11222222 122211111 2344 55555667876555443222245678999999
Q ss_pred HHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhHHHhccccCCCcchhhHHh-HHHHHhhhhhHHHHhh
Q 036990 194 TILIGIFTALFVCIFICPVWAGDDLHSLVANNIDKLANFFEAFVPLYLKISQEGEPEMTFLEG-YKCVLNSKQTEESLAN 272 (457)
Q Consensus 194 ~i~iG~~ia~lv~~~i~P~~a~~~l~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~r~~L~~~~~~~~l~~ 272 (457)
+|+|||++|+++++++||.|.++++++.+.+.++..++|++.+++.|..++.++ ..++. .|+.-++....++..+
T Consensus 508 DTliG~~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~~~~~~----~~yr~aRr~a~~a~a~l~~~~~ 583 (701)
T TIGR01667 508 DTLIGCLIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQGKPDD----LAYRIARRNAHNTDAALSTTLS 583 (701)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch----hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988876554321 11121 1222222222344444
Q ss_pred hhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036990 273 FAGWEPGHGKFRFRHPWKKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDACINMSSEAVKALKELAFS 350 (457)
Q Consensus 273 ~a~~Ep~~~~~~~~~p~~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~a 350 (457)
.+..||+..+ ..++...+++..++.+++++.+|+.+- +....+++...+.+ ....+.+.|..+...
T Consensus 584 ~m~~EP~~~~----~~~~~~~~ll~~~~~ll~~isal~a~r----~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~ 649 (701)
T TIGR01667 584 NMMQEPAFNS----HYLEDGFRLLTLSHTLLSYISALGAHR----ERLLNPELAAELLQ----ACEIVAKAIQRCQAR 649 (701)
T ss_pred HHHhCCCCch----hhHHHHHHHHHHHHHHHHHHHHHHhcc----cccCChhHHHHHHH----HHHHHHHHHHHHHHh
Confidence 4557998876 467777899999999999999998543 22123344444443 344556666666666
No 5
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.96 E-value=3.3e-26 Score=250.46 Aligned_cols=238 Identities=23% Similarity=0.338 Sum_probs=185.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 036990 50 RIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGAHHLASLPGE 129 (457)
Q Consensus 50 ~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~~g~ 129 (457)
+++|++|+++|++++.++++ +++++ +|||+++|+++|+||+.|.++.|+++|++||++|+++|+++..+ +++
T Consensus 1 ~~~~alr~~lA~~lAl~ia~----~l~l~-~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~---~~~ 72 (650)
T PF04632_consen 1 RLRFALRTALAAMLALYIAF----WLQLP-HPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVAL---FPQ 72 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HhCCC-CcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc
Confidence 47899999999999988765 45677 99999999999999999999999999999999999999997644 443
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036990 130 KGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSAY-HDDEVMRIAYERVITILIGIFTALFVCIF 208 (457)
Q Consensus 130 ~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~~-~~~~~~~~a~~R~~~i~iG~~ia~lv~~~ 208 (457)
+|.+..+.+.+|+++|.|+..+. ...+.|+++++++|.++|.+++. +|++.++++.+|+.+|+||++|+.+|+.+
T Consensus 73 --~p~l~~~~lal~i~~c~~~~~~~--~~~~~y~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l 148 (650)
T PF04632_consen 73 --SPLLFLLALALWIGLCLYLSLLD--RNFRSYAFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVSML 148 (650)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556566666777788876532 33458999999999999998874 56778999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhHHHhccccCCCcchhhHHhHHHHHhhhhhHHHHhhhhcCCCCCCCCCCCCc
Q 036990 209 ICPVWAGDDLHSLVANNIDKLANFFEAFVPLYLKISQEGEPEMTFLEGYKCVLNSKQTEESLANFAGWEPGHGKFRFRHP 288 (457)
Q Consensus 209 i~P~~a~~~l~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~~~~~~l~~~a~~Ep~~~~~~~~~p 288 (457)
+||.+.++.+++.+.+.+++.+++++..+ ++.++.. . ..++..++....+.+..++++|.+..+. .
T Consensus 149 ~~P~~~~~~l~~~l~~~l~~~~~~~~~~l----~~~~~~~---~---~~~~l~~~~~~l~~~~~~~~~e~~~~~~----~ 214 (650)
T PF04632_consen 149 FFPQRARRQLRRRLAQRLADLARWLAALL----DGDPDPA---A---ERRRLARDIAALESLLSHARYESPRLRR----R 214 (650)
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccc---h---HHHHHHHHHHHHHHHHhhccccCchhHH----H
Confidence 99999999999999999999999988763 3332211 1 2334445555678888999999876542 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 036990 289 WKKYLKIGSQTRDCAYRIESLNGYL 313 (457)
Q Consensus 289 ~~~y~~i~~~~~~~~~~l~aL~~~~ 313 (457)
...++.+...+..+...+..++...
T Consensus 215 ~~~~~~l~~~~~~l~~~~~~l~~~~ 239 (650)
T PF04632_consen 215 RRRLRALQARLLRLLALLRSLARRL 239 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555444
No 6
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.95 E-value=2e-25 Score=238.98 Aligned_cols=218 Identities=17% Similarity=0.201 Sum_probs=180.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhc---------ccChhHHHHHHHHHHHHHHHHHH
Q 036990 45 REDPRRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVF---------EFSVGGTLSRGLNRGLATFLASA 115 (457)
Q Consensus 45 ~~d~~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~---------~p~~G~t~~~~~~Ri~GTliG~~ 115 (457)
.++.++++|++|+++|++++..+++ +++++ +||||++|+++|+ ||..|.++.|+++|++||++|++
T Consensus 3 ~p~~~~~~falk~~lA~~LAL~ia~----~l~L~-~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~ 77 (652)
T PRK10631 3 SIANQRLRFAVKLAFAIVLALFVGF----HFQLE-TPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCI 77 (652)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH----HCCCC-CccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999987765 45667 9999999999999 99999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Q 036990 116 LGFGAHHLASLPGEKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSAY-HDDEVMRIAYERVIT 194 (457)
Q Consensus 116 lg~~~~~l~~~~g~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~~-~~~~~~~~a~~R~~~ 194 (457)
+|+++..+ +++ .|+++.+++.+|+++|.|...+. +.+..|+++++++|.++|.++.. +++..|+++..|+.+
T Consensus 78 ~~l~l~~~---f~~--~p~l~~l~l~lWig~c~~~s~l~--r~~~sY~~~LaGyTa~iI~~~~~~~p~~~f~~A~~R~~E 150 (652)
T PRK10631 78 AALVIIIA---TIR--APLLMILLCCIWAGFCTWISSLV--RVENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSE 150 (652)
T ss_pred HHHHHHHH---hcC--ChHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 99997654 443 56666667777888888876532 34458999999999999988874 467789999999999
Q ss_pred HHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhHHHhccccCCCcchhhHHhHHHHHhhhhhHHHHhhhh
Q 036990 195 ILIGIFTALFVCIFICPVWAGDDLHSLVANNIDKLANFFEAFVPLYLKISQEGEPEMTFLEGYKCVLNSKQTEESLANFA 274 (457)
Q Consensus 195 i~iG~~ia~lv~~~i~P~~a~~~l~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~~~~~~l~~~a 274 (457)
|+||++|+.+|+.+++|.+.++.+++.+.+.+.+...+++.++ .+.+. ++.....++.+.+....|.++.+.
T Consensus 151 i~iGi~ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~l----~~~~~----~~~~~~~~~L~~di~~le~lr~~~ 222 (652)
T PRK10631 151 IVIGIVCAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCI----KHGDK----EEVDKAWGDLVRRTTALNGMRSNL 222 (652)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHh----ccCcc----chhhHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998774 22221 112234456666777789999999
Q ss_pred cCCCCCCC
Q 036990 275 GWEPGHGK 282 (457)
Q Consensus 275 ~~Ep~~~~ 282 (457)
.||.++.|
T Consensus 223 ~~e~~~~r 230 (652)
T PRK10631 223 MMESSRWQ 230 (652)
T ss_pred ccCCcchh
Confidence 99987665
No 7
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.89 E-value=5.5e-21 Score=203.71 Aligned_cols=235 Identities=17% Similarity=0.151 Sum_probs=160.0
Q ss_pred CcCCcchHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036990 44 GREDPRRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGAHHL 123 (457)
Q Consensus 44 ~~~d~~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l 123 (457)
...|+..++|++|+++|+++++.++. ..+|+ +|||+++|+++|++|+.|.|.+|+++|++||++|+++|+++.++
T Consensus 344 A~tNp~~~R~ALRt~lAa~La~~i~~----~l~w~-~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ll~v~ 418 (683)
T PRK11427 344 AFTNPDYMRYALKTLLACLICYTFYS----GVDWE-GIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTLL 418 (683)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHH----HcCCC-ccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999987764 34566 99999999999999999999999999999999999999998754
Q ss_pred hcCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHHH
Q 036990 124 ASLPGEKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSA-YHDDEVMRIAYERVITILIGIFTA 202 (457)
Q Consensus 124 ~~~~g~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~-~~~~~~~~~a~~R~~~i~iG~~ia 202 (457)
. .+...+.+.++ ++++.+.++..++. ....++.|+++.+++|+.++.+.. ..+......+.+|+.+|++|++++
T Consensus 419 l-~P~l~~~~~Ll-llllp~~llg~wv~---~~~~R~sYa~~~ag~T~~li~L~~l~~p~~d~~~i~dRvl~tLLGi~iA 493 (683)
T PRK11427 419 V-MPWLDNIVELL-FVLAPIFLLGAWIA---TSSERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGILIGTVVS 493 (683)
T ss_pred h-ccccccHHHHH-HHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHhhcccCcccchHHHHHHHHHHHHHHHHH
Confidence 3 23222222222 22222222222221 113456788888889988887533 222222345778999999999999
Q ss_pred HHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhHHHhccccCCCcchhhHHhHHHHHhhhhhHHHHhhhhcCCCCCCC
Q 036990 203 LFVCIFICPVWAGDDLHSLVANNIDKLANFFEAFVPLYLKISQEGEPEMTFLEGYKCVLNSKQTEESLANFAGWEPGHGK 282 (457)
Q Consensus 203 ~lv~~~i~P~~a~~~l~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~~~~~~l~~~a~~Ep~~~~ 282 (457)
.+++.++||.|.++.+++.+.+.++.++++++... . ......+...+..++.-.+.++.|.+.....+||. +
T Consensus 494 ~la~~lVwP~~~~~~L~~~l~~aLr~la~~l~~~~-----~-~~~~~~~~~~~~R~~l~~a~~~le~~~~rl~~Epq--~ 565 (683)
T PRK11427 494 AVIYTFVWPESEARTLPQKLAGALGMLSKVLRIPR-----Q-QEVTALRTYLQIRIGLHAAFNACEEMCQRVALERQ--L 565 (683)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhccc-----c-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcc--c
Confidence 99999999999999999999999999988876431 0 10000011001112222233445666666678992 1
Q ss_pred CCCCCcHHHHHHHHHHHHH
Q 036990 283 FRFRHPWKKYLKIGSQTRD 301 (457)
Q Consensus 283 ~~~~~p~~~y~~i~~~~~~ 301 (457)
+.+.+++++..++-
T Consensus 566 -----~~~~~~~~~~~~~~ 579 (683)
T PRK11427 566 -----DSEERALLIERSQT 579 (683)
T ss_pred -----chHHHHHHHHHHHH
Confidence 23667777766655
No 8
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.80 E-value=1.6e-17 Score=182.39 Aligned_cols=243 Identities=18% Similarity=0.211 Sum_probs=167.0
Q ss_pred HHhcCcCCcchHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccC-hhHHHHHHHHHHHHHHHHHHHHH
Q 036990 40 TKRLGREDPRRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFS-VGGTLSRGLNRGLATFLASALGF 118 (457)
Q Consensus 40 ~~~~~~~d~~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~-~G~t~~~~~~Ri~GTliG~~lg~ 118 (457)
+..+.++++..++|++|+++++++++.++. +.+|+ +|+|+++|+++|++|+ .|++..++.+|+.||++|+++|+
T Consensus 344 ~~~~~~~~~~alr~a~R~ala~~~~~~~~~----~~~w~-~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~ 418 (674)
T COG1289 344 ALAHHRLNSPALRHALRTALALLLGYAFWL----ALGWP-HGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGL 418 (674)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHHHH----HhcCC-ccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445667888899999999999999988763 45677 9999999999999999 99999999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 036990 119 GAHHLASLPGEKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSAYHDDEVMRIAYERVITILIG 198 (457)
Q Consensus 119 ~~~~l~~~~g~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~~~~~~~~~~a~~R~~~i~iG 198 (457)
++.++. .+..+. .+.++++.+.+.+.+++ ..+|.++.+ ++|+.+.+..+..+.+...+...|+.++++|
T Consensus 419 ~~l~~~--~p~~~~--~l~~l~~~~~l~~~~~~-----~~~~~~a~~--~i~l~v~~~~~l~~~~~~~~~~~r~~d~~iG 487 (674)
T COG1289 419 LVLLLL--LPLIPG--LLLLLLLAALLFAAGIR-----LAKYRLATL--GITLLVLFLVGLLGSNGPDYDLPRFLDTLLG 487 (674)
T ss_pred HHHHHh--cccchh--HHHHHHHHHHHHHHHHH-----hcchhHHHH--HHHHHHHHHHHHcccchhhhhHHHHHHHHHH
Confidence 987663 222222 11122221111112221 234556653 3444444444434456678899999999999
Q ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhHHHhccccCCCcchhhHHhHHHHHhhhhhHHHHhhhhcCCC
Q 036990 199 IFTALFVCIFICPVWAGDDLHSLVANNIDKLANFFEAFVPLYLKISQEGEPEMTFLEGYKCVLNSKQTEESLANFAGWEP 278 (457)
Q Consensus 199 ~~ia~lv~~~i~P~~a~~~l~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~~~~~~l~~~a~~Ep 278 (457)
+++|+++.+++||.|....+++...+.++...+++......+..+.+ . ... .+.........+.+.-||
T Consensus 488 ~lIa~~~a~~v~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~--~-------~~~--~~~~~~l~~~~~~~~~~p 556 (674)
T COG1289 488 SLIALALAFLVWPLWRPRRLRRALRRALRALRRDLASALSREPTGRE--R-------RFE--HNADDALSQLLNLMASEP 556 (674)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcCCccch--h-------hhh--hccHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999887644332221 0 000 011111111122222377
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036990 279 GHGKFRFRHPWKKYLKIGSQTRDCAYRIESLNGYL 313 (457)
Q Consensus 279 ~~~~~~~~~p~~~y~~i~~~~~~~~~~l~aL~~~~ 313 (457)
...+ .+++.-...++..+.+.....++..+-
T Consensus 557 ~~~~----~~~~~~~~~l~~~~~~~~~~~~l~~~~ 587 (674)
T COG1289 557 AVIR----LALDEGFRLLTLGHVLIRLRLALGALR 587 (674)
T ss_pred chhh----hHHhhhhHHHHccHHHHHHHHHhhcCC
Confidence 6554 355666667777788888887776543
No 9
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.76 E-value=1e-15 Score=152.34 Aligned_cols=162 Identities=22% Similarity=0.311 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 036990 52 IHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGAHHLASLPGEKG 131 (457)
Q Consensus 52 ~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~~g~~~ 131 (457)
...+|+|+|++++.+++. +++++ .+..|++++++.++||...+++++++|++|+++|+++|.++..+ +| .
T Consensus 11 ~RtlKt~ia~~La~~ia~----~l~~~-~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l---~g--~ 80 (332)
T COG4129 11 ARTLKTGLAAGLALLIAH----LLGLP-QPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLL---FG--Q 80 (332)
T ss_pred HHHHHHHHHHHHHHHHHH----HhCCC-chHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--c
Confidence 479999999999988875 34556 78899999999999999999999999999999999999997655 55 3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036990 132 EPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSAYHDDEVMRIAYERVITILIGIFTALFVCIFICP 211 (457)
Q Consensus 132 ~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~lv~~~i~P 211 (457)
+|+.+++.+.+++.++..++. .-|.....+....++... ..+.++. ..|+.++++|+++|+++|.++.|
T Consensus 81 ~~~~~~v~~~i~i~~~~~~~~--------~~g~~~~~~~~~~ii~~~-~~~~~~~--~~r~l~~~vG~~~a~lvn~~~~~ 149 (332)
T COG4129 81 NPIAFGVVLLIIIPLLVLLKL--------ENGVVPITVGVLHILVAA-MIPLFLI--FNRFLLVFVGVGVAFLVNLVMPP 149 (332)
T ss_pred cHHHHHHHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHc-ccchhHH--HHHHHHHHHHHHHHHHHhhhcCC
Confidence 577788877777766665432 233322222222222222 2223333 33999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Q 036990 212 VWAGDDLHSLVANNIDKLANFFEAF 236 (457)
Q Consensus 212 ~~a~~~l~~~l~~~l~~~~~~l~~~ 236 (457)
+. .+++....+......+.+...
T Consensus 150 ~~--~~~~~~~~kv~~~~~~il~~~ 172 (332)
T COG4129 150 PD--YELKLYRAKVEAILASILWEV 172 (332)
T ss_pred ch--HHHHHHHHHHHHHHHHHHHHH
Confidence 87 556655555555555555543
No 10
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.74 E-value=3.1e-15 Score=160.01 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=137.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036990 47 DPRRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGAHHLASL 126 (457)
Q Consensus 47 d~~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~ 126 (457)
.|.+.-..+|+.++.+++..+.+ .++.+ +++|+..++++++||..|.+..|++.|++||++|+.+++++.-..
T Consensus 26 ~P~r~~~~~r~~~a~~L~l~i~~----~l~~P-~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~-- 98 (683)
T PRK11427 26 RPGRVPQTLQLWVGCLLVILISM----TFEIP-FLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWS-- 98 (683)
T ss_pred CCChHHHHHHHHHHHHHHHHHHH----HcCCC-HHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 44455566999999999977654 34556 999999999999999999999999999999999999999876442
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHH-----HHHHH
Q 036990 127 PGEKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLI--SVSAYHDDEVMRIAYERVIT-----ILIGI 199 (457)
Q Consensus 127 ~g~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv--~l~~~~~~~~~~~a~~R~~~-----i~iG~ 199 (457)
.+.|.+..+++.+|+++|.|+.. .+|..|.++++++|. ++ .+.+..+ .-+ ...|..+ +.+|+
T Consensus 99 ---v~~P~l~~l~ialw~~~~lyl~r----~~rl~yvf~lag~ta-ii~~~f~~v~~--~~E-~~~R~~e~~w~~i~~gi 167 (683)
T PRK11427 99 ---YGYPLIRLIIAGPILMGCMFLMR----THRLGLVFFAVAIVA-IYGQTFPAMLD--YPE-VVVRLTLWCIVVGLYPT 167 (683)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHH-HHHhhcccccc--hHH-HHHHHHHHHHHHHHHHH
Confidence 35678888888888899998743 244679999999994 55 3344333 122 3778888 99999
Q ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Q 036990 200 FTALFVCIFICPVWAGDDLHSLVANNIDKLANFFE 234 (457)
Q Consensus 200 ~ia~lv~~~i~P~~a~~~l~~~l~~~l~~~~~~l~ 234 (457)
+|+.+||.++||.+.++.++.++.+.+++...++.
T Consensus 168 ~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~l~ 202 (683)
T PRK11427 168 LLMTLIGVLWFPSRAINQMHQALNDRLDDAISHLT 202 (683)
T ss_pred HHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998877765
No 11
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=99.61 E-value=8.2e-14 Score=133.29 Aligned_cols=208 Identities=13% Similarity=0.117 Sum_probs=140.3
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhHHHhccccC--CC-cc--hhhHHhHHHHHhhhhhHHHHhhhhcCCCCCCCC
Q 036990 209 ICPVWAGDDLHSLVANNIDKLANFFEAFVPLYLKISQE--GE-PE--MTFLEGYKCVLNSKQTEESLANFAGWEPGHGKF 283 (457)
Q Consensus 209 i~P~~a~~~l~~~l~~~l~~~~~~l~~~~~~~~~~~~~--~~-~~--~~~~~~~r~~L~~~~~~~~l~~~a~~Ep~~~~~ 283 (457)
.+|.+++..+|+.+++.+..++++|+.++..+.....+ .. .. +...+............+.+..+++|||+.++
T Consensus 1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G- 79 (229)
T PF10334_consen 1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLKG- 79 (229)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCC-
Confidence 47999999999999999999999999887665543211 11 11 12233333333334456888899999999766
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCC
Q 036990 284 RFRHPWKKYLKIGSQTRDCAYRIESLNGYLILNTE--TQIPEEIRGKMQDACINMSSEAVKALKELAFSIKTMTKPCSAD 361 (457)
Q Consensus 284 ~~~~p~~~y~~i~~~~~~~~~~l~aL~~~~~~~~~--~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~al~~~~~~~~~~ 361 (457)
+||.+.|++++..++++.+.+..|.... ... ..+-+++...+....+++.+++..+|..+++|++++.|+|+ .
T Consensus 80 --~FP~~~Y~~l~~~~~~il~~l~~l~~~~--~~l~~~~~~~~l~~~~~~~~~~~~~~i~~vl~~ls~al~~g~pLP~-~ 154 (229)
T PF10334_consen 80 --RFPKETYQRLLELCQNILDLLSLLSYVS--TRLEPSEWRERLLRRTGWLRPELIGDIFSVLYMLSSALRTGQPLPP-Y 154 (229)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHcchhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCc-c
Confidence 6899999999999999999998886555 222 22333444445556778889999999999999999999975 2
Q ss_pred ccchHHHHHHHHHHHHHhccc-------CC---CchHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036990 362 SHITKSKIAAKNLKSLLSTSL-------CK---ETEIS---EVMQAITVVSLLVDVVACTKKIAESVQELASFA 422 (457)
Q Consensus 362 ~~~~~~~~a~~~L~~~l~~~~-------~~---~~~~~---~~~~~~~~as~l~e~~~~le~l~~~v~~L~~~~ 422 (457)
...|-..+...-+........ .+ +.++. ++..|++..+....|++++++|+..||+|+|+.
T Consensus 155 lp~pl~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~y~~~~v~~~~~~~i~~~lD~lv~~vK~lvGE~ 228 (229)
T PF10334_consen 155 LPAPLVRRHFDHLRKLWQLDRSSDDEVELPDILSLEHLRDEDYRRFCVAVSAASSILERLDELVIVVKELVGEQ 228 (229)
T ss_pred CCcchHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 111112222222211110000 00 11111 245666777777899999999999999999985
No 12
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=99.60 E-value=3.7e-14 Score=125.33 Aligned_cols=137 Identities=27% Similarity=0.438 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 036990 52 IHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGAHHLASLPGEKG 131 (457)
Q Consensus 52 ~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~~g~~~ 131 (457)
...+|+++|.+++..++.+. +.+ ++++|++++++++|||..+|++.+++|+.|+++|+++|+++..+. | .
T Consensus 5 ~r~iKtaiA~~la~~ia~~l----~~~-~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~---g--~ 74 (141)
T PF06081_consen 5 MRTIKTAIAAFLAILIAQLL----GLQ-YPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLIL---G--Y 74 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHH----CCC-chHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C--c
Confidence 36899999999998876533 444 899999999999999999999999999999999999999986553 3 3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036990 132 EPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSAYHDDEVMRIAYERVITILIGIFTALFVCIFI 209 (457)
Q Consensus 132 ~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~lv~~~i 209 (457)
+|+.+++.+++.+..+..++. ..+...+.+++..++..+ +++ +..+..|+.++++|+.+|+++|+++
T Consensus 75 ~~~~~~l~v~i~i~~~~~l~~--------~~~~~~a~v~~~~i~~~~--~~~-~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 75 NPLSIGLAVIITIPICNWLKL--------GEGIIVAAVTFVHILLSG--SDS-FSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred cHHHHHHHHHHHHHHHHHhCC--------CCeehHHHHHHHHHHHcC--Ccc-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 677777777766665555443 123333444444443332 333 3449999999999999999999864
No 13
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.59 E-value=3.3e-12 Score=140.60 Aligned_cols=218 Identities=22% Similarity=0.203 Sum_probs=148.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036990 45 REDPRRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGAHHLA 124 (457)
Q Consensus 45 ~~d~~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~ 124 (457)
.+...+++|++|+.+|+.++.++++.. +.+ +++|+++|+.++++|..|+.+.|++.|++||++|..++.++..+.
T Consensus 5 ~~~~~~~~~~lr~~~a~~la~~~~~~~----~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~ 79 (674)
T COG1289 5 RPTNADWRYALRTFLAACLALALAFLL----GLP-QPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALL 79 (674)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHc----CCC-CccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345668899999999999998887644 445 999999999999999999999999999999999999999876442
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcC--C-CChHHHHHHHHHHHHHHHHHHH
Q 036990 125 SLPGEKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSA--Y-HDDEVMRIAYERVITILIGIFT 201 (457)
Q Consensus 125 ~~~g~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~--~-~~~~~~~~a~~R~~~i~iG~~i 201 (457)
.+.+.+++.++ .++.+.|+.... .......|+++++++|+.++. +. . .+...+..+.+|+..+++|+.|
T Consensus 80 ---~~~p~~f~~~~--~~~~~l~~~~~~--~~~~~~~~a~~la~yT~~~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~ 151 (674)
T COG1289 80 ---AQEPWLFLLLL--TLWLGLCTAIGS--LYRTIASYAFVLAGYTALIIG-PAPAIPEPELLFDGAVWRVVEILLGILC 151 (674)
T ss_pred ---ccCcHHHHHHH--HHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 23344544333 333333333221 122334789999999999987 42 2 2344789999999999999999
Q ss_pred HHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhHHHhccccCCCcchhhHHhHHHHHhhhhhHHHHhhhhcCCCCCC
Q 036990 202 ALFVCIFICPVWAGDDLHSLVANNIDKLANFFEAFVPLYLKISQEGEPEMTFLEGYKCVLNSKQTEESLANFAGWEPGHG 281 (457)
Q Consensus 202 a~lv~~~i~P~~a~~~l~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~~~~~~l~~~a~~Ep~~~ 281 (457)
+-.+....+|......|.+.+.........+.... ..++..+ .+.........++.....+.++.. .+|...+
T Consensus 152 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~l~~~~~~~~~r~~-~~~~~~~ 224 (674)
T COG1289 152 APVVPLLESPSRLYQALANYLEAKSRLFAQLLLAA----AAGELLD--TARQNAALVDALAQTLTLRLLRSA-GFEGSRG 224 (674)
T ss_pred hccchHhhhHHHHHHHHHHHHHHHHhccchhhhhh----hcCCccc--HHHHhHHHHHHHHHHHHHHHHHHh-cccCCch
Confidence 99999877887777766666655554444443322 1121111 122223344555655455555655 6676655
Q ss_pred C
Q 036990 282 K 282 (457)
Q Consensus 282 ~ 282 (457)
+
T Consensus 225 ~ 225 (674)
T COG1289 225 R 225 (674)
T ss_pred h
Confidence 4
No 14
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.58 E-value=2.2e-14 Score=124.33 Aligned_cols=116 Identities=31% Similarity=0.512 Sum_probs=85.8
Q ss_pred cccCcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhhhhc
Q 036990 76 GFGISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGAHHLASLPGEKGEPILLGLFVFLLAAAVSFLRFFPE 155 (457)
Q Consensus 76 ~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~~g~~~~~~~~~l~v~l~~~~~~~~~~~~~ 155 (457)
+.+ |++|+++|++++++|+.|++.+++.+|++||++|+++|++++.+. + ++ +.+.+.++++.++..+++
T Consensus 10 ~~~-~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~---~--~~-~~~~~~~~~~~~~~~~~~---- 78 (128)
T PF13515_consen 10 GLP-HGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLF---P--GN-YVLILIVFLLMFLIFYFL---- 78 (128)
T ss_pred cCC-chHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C--CH-HHHHHHHHHHHHHHHHHH----
Confidence 445 999999999999999999999999999999999999999987653 1 22 333344444433333321
Q ss_pred cccchhHHHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHHHHHHHHH
Q 036990 156 MKARYDYGLMIFILTFSLISVSAY---HDDEVMRIAYERVITILIGIFTALFV 205 (457)
Q Consensus 156 ~~~~y~~~~~v~~lT~~iv~l~~~---~~~~~~~~a~~R~~~i~iG~~ia~lv 205 (457)
+.+ |....+++|..++++.++ ++++.++.+.+|+.++++|+++++++
T Consensus 79 -~~~--y~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 79 -SKN--YAIAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred -hcc--HHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 234 455556677777766653 24556789999999999999999874
No 15
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=99.43 E-value=6.4e-10 Score=117.18 Aligned_cols=259 Identities=18% Similarity=0.184 Sum_probs=171.0
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036990 45 REDPRRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFE-FSVGGTLSRGLNRGLATFLASALGFGAHHL 123 (457)
Q Consensus 45 ~~d~~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~-p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l 123 (457)
..|.+.++.-+|.+++..++.++++..+....+++.+|.++|..+++.- -.+|..+...+.=++|+++|.++|++.+++
T Consensus 10 ~ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~l~~~~ 89 (459)
T PF10337_consen 10 HLDRRSLKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWGLLAMYI 89 (459)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4488899999999999999999988777655567788998887755432 278889999999999999999999888877
Q ss_pred hcCCCCC------------------c-hH-------------------HHHHHHHHHHHHHHHHHhhhhccccchhHHHH
Q 036990 124 ASLPGEK------------------G-EP-------------------ILLGLFVFLLAAAVSFLRFFPEMKARYDYGLM 165 (457)
Q Consensus 124 ~~~~g~~------------------~-~~-------------------~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~ 165 (457)
+...-.+ + ++ .+.++..++.+++..++|.. .|++..+.+
T Consensus 90 a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~---~p~~~~~~I 166 (459)
T PF10337_consen 90 AVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAK---NPKLNFPVI 166 (459)
T ss_pred HHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHh---CcchHHHHH
Confidence 6422111 1 11 22233333333333444431 233444443
Q ss_pred HHHHHHHHHHhcCC-CCh-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Q 036990 166 IFILTFSLISVSAY-HDD-EVMRIAYERVITILIGIFTALFVCIFICPVWAGDDLHSLVANNIDKLANFFEAFVPLYLKI 243 (457)
Q Consensus 166 v~~lT~~iv~l~~~-~~~-~~~~~a~~R~~~i~iG~~ia~lv~~~i~P~~a~~~l~~~l~~~l~~~~~~l~~~~~~~~~~ 243 (457)
++.+...+.+.++. -+. ....++..=+.-.++|+++++++|++|||.+.+..+.+.+.+.+..+.+.+..- .+|+..
T Consensus 167 ~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~-~~~l~~ 245 (459)
T PF10337_consen 167 FGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQ-RNFLQS 245 (459)
T ss_pred HHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHhC
Confidence 33333333333332 232 345556666678899999999999999999999999999999999998888754 456655
Q ss_pred ccCCCcch----hhHHhHHHHHhhh-hhHHHHhhhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh
Q 036990 244 SQEGEPEM----TFLEGYKCVLNSK-QTEESLANFAGWEPGHGKFRFRHPWKKYLKIGSQTRDCAYRIESLNG 311 (457)
Q Consensus 244 ~~~~~~~~----~~~~~~r~~L~~~-~~~~~l~~~a~~Ep~~~~~~~~~p~~~y~~i~~~~~~~~~~l~aL~~ 311 (457)
.+++...+ +.++..+..+.++ ...+.-..+++.|-..++ ++-+.++.+...+|++...+..|..
T Consensus 246 ~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~gr----l~~~Dl~~i~~~lr~l~~~~~gL~~ 314 (459)
T PF10337_consen 246 SEPSDEFDAKSLKKLKATKAKLRALYAKLQAALRFLKLEISYGR----LSPDDLKPIFSLLRSLMIPLSGLSS 314 (459)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeec----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332111 1222223333332 224555677888988886 4668889998888888777766654
No 16
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.21 E-value=2.6e-08 Score=109.45 Aligned_cols=175 Identities=21% Similarity=0.163 Sum_probs=126.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhc--ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036990 49 RRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVF--EFSVGGTLSRGLNRGLATFLASALGFGAHHLASL 126 (457)
Q Consensus 49 ~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~--~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~ 126 (457)
..+++++|+++++.++++++. +.+|+ .|.-+++++.++. -.+.++...+...++.|+++|+++|++..++. .
T Consensus 338 ~A~~~alra~la~~~~~l~Wi----~t~W~-~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~v-l 411 (650)
T PF04632_consen 338 LALRNALRAFLAILIAGLFWI----ATGWP-SGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFV-L 411 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcCCC-hhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence 466778888888888877654 34677 7778888777776 77899999999999999999999999876543 3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 036990 127 PGEKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSAYHDDEVMRIAYERVITILIGIFTALFVC 206 (457)
Q Consensus 127 ~g~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~lv~ 206 (457)
|.- ++...++++++.+.++..+ ...+|++.+..+.+++++.+.+..+......+.....+.+.+++|+++++++.
T Consensus 412 P~~-~~f~~L~l~l~~~l~~~~~----~~~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l~~ 486 (650)
T PF04632_consen 412 PHL-DGFPLLALVLAPFLFLGGL----LMARPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAALVF 486 (650)
T ss_pred hcc-CcHHHHHHHHHHHHHHHHH----HHcCchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 3333333333332222222 22467777766556666665554443333335678999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHHHHHHHHH
Q 036990 207 IFICPVWAGDDLHSLVANNIDKLANFFE 234 (457)
Q Consensus 207 ~~i~P~~a~~~l~~~l~~~l~~~~~~l~ 234 (457)
.+++|.......++.+.+..+++++..+
T Consensus 487 ~li~p~~~~~~~rrl~~~~~~~l~~~~~ 514 (650)
T PF04632_consen 487 RLIRPFSPEWRRRRLLRALRRDLARLAR 514 (650)
T ss_pred HHHCCCChhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988888886643
No 17
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=99.02 E-value=4.7e-07 Score=89.54 Aligned_cols=222 Identities=18% Similarity=0.149 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036990 132 EPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSAYHDDEVMRIAYERVITILIGIFTALFVCIFICP 211 (457)
Q Consensus 132 ~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~lv~~~i~P 211 (457)
+++++.+.+++++++++++..+. ++| +. +...|..+.++....+.... -++.+...+++|+++..++++++||
T Consensus 22 ~~~l~~~~~~~~~F~~~ml~~~G---~r~--~~-i~~~~Ll~~v~t~~~~~~~~-~~~~~~~l~~~Gglwy~~lsl~~~~ 94 (284)
T PF12805_consen 22 YPWLLILVLALLTFFFGMLGVYG---PRA--AT-IGFATLLVAVYTMAGPSPGP-EALEHALLFLAGGLWYLLLSLLWWP 94 (284)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh---hHH--HH-HHHHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666665543 222 22 23223222221211122112 5788889999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhHHHhccccCCCcchhh---HHhHHHHHhhhhhHHHHhhh--hcCCCCCCCCCCC
Q 036990 212 VWAGDDLHSLVANNIDKLANFFEAFVPLYLKISQEGEPEMTF---LEGYKCVLNSKQTEESLANF--AGWEPGHGKFRFR 286 (457)
Q Consensus 212 ~~a~~~l~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~r~~L~~~~~~~~l~~~--a~~Ep~~~~~~~~ 286 (457)
.+..+..++.++++++.+++|++.- .+++++...+. .+.. ....+..++++ .+..+.. .+..++++.
T Consensus 95 l~p~r~~rqaLa~~y~~lA~yl~~k-a~~~~p~~~~~-~~~~~~~l~~~q~~v~~~--~~~~R~~l~~~r~~~~~~---- 166 (284)
T PF12805_consen 95 LRPYRPVRQALAECYRALADYLRAK-ARFFDPDQHDD-DEQLRIELAQQQIKVNEA--LEQARELLLRRRRSGRGK---- 166 (284)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHH-HhcCCCCCccc-hhHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcccCCC----
Confidence 9999999999999999999999853 33342221111 1111 11112223322 1222221 111122211
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCC
Q 036990 287 HPWKKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGK-----MQDACINMSSEAVKALKELAFSIKTMTKPCSAD 361 (457)
Q Consensus 287 ~p~~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~-----~~~~~~~l~~~~~~~L~~La~al~~~~~~~~~~ 361 (457)
+....+++....-...+..+...+.. ...+++++. +...++++..+.++.++.++.++...++.+
T Consensus 167 -~~~~~~~ll~~~~~a~Dl~E~~~as~------~~y~~l~~~f~~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~--- 236 (284)
T PF12805_consen 167 -PSTYGRRLLLLFFEAVDLFERALASH------YDYEELREQFKHSDVLFRFQRLLEQLAQALRQIAQAILRGRPYH--- 236 (284)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHhcc------ccHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---
Confidence 11111222222222222222211111 011222222 234466777788889999999999777653
Q ss_pred ccchHHHHHHHHHHHHHh
Q 036990 362 SHITKSKIAAKNLKSLLS 379 (457)
Q Consensus 362 ~~~~~~~~a~~~L~~~l~ 379 (457)
+.++++...++++..+.
T Consensus 237 -~~~~l~~~l~~l~~~l~ 253 (284)
T PF12805_consen 237 -HRNRLKRALEALEESLE 253 (284)
T ss_pred -CchHHHHHHHHHHHHHH
Confidence 23566777777777654
No 18
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=98.81 E-value=9.4e-06 Score=89.47 Aligned_cols=294 Identities=15% Similarity=0.139 Sum_probs=152.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036990 49 RRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGAHHLASLPG 128 (457)
Q Consensus 49 ~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~~g 128 (457)
..+.+++|+.+|+..+.++.+.. +....+.=+.+.++...-.+..+.+..-+.+++-|++...++.++..+. +
T Consensus 6 ~~~~~~l~v~ia~~~~~~~~~~~----g~~~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll--~- 78 (701)
T TIGR01667 6 QKLVYCLPVFIALMGAELRIWWF----GLLFLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLL--F- 78 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh----CCccHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH--h-
Confidence 45779999999998886654322 1111333344444444445666777666777777777776666665543 2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhccccchh-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036990 129 EKGEPILLGLFVFLLAAAVSFLRFFPEMKARYD-YGLMIFILTFSLISVSAYHDDEVMRIAYERVITILIGIFTALFVCI 207 (457)
Q Consensus 129 ~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~-~~~~v~~lT~~iv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~lv~~ 207 (457)
+.|+++.+.+++.++++..+.. +.++|. .++ +.+-.++..+.+...... .+.--..+++|.++-.++++
T Consensus 79 --~~p~~~~~~l~~~tf~~~mlga---~G~r~~~I~f--~~L~~aiytml~~~~~~~---w~~~pllll~GalwY~l~sl 148 (701)
T TIGR01667 79 --PKPWLFPFLLTLLTFGFILLGA---LGQRYATIAF--ASLLAAIYTMLGAGEVPV---WFIEPLLILAGTLWYGLLTL 148 (701)
T ss_pred --cchHHHHHHHHHHHHHHHHHHH---hhhhHHhHHH--HHHHHHHHHHcCcccccH---HHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444444433 335543 111 111111111122221111 22245567889999999999
Q ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHhHHHhccccCCCcchhhHHhH--H-HHHhhhhh-HHHHhhhhcCCCCCCCC
Q 036990 208 FICPVWAGDDLHSLVANNIDKLANFFEAFVPLYLKISQEGEPEMTFLEGY--K-CVLNSKQT-EESLANFAGWEPGHGKF 283 (457)
Q Consensus 208 ~i~P~~a~~~l~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--r-~~L~~~~~-~~~l~~~a~~Ep~~~~~ 283 (457)
+.+..+..+-+++.+++.++.+++|++.= ..++++.++++.++...+.. + +..+..++ .+.+.. + .+.++.
T Consensus 149 l~~~l~p~rp~q~~La~~y~~La~yL~aK-a~lf~p~~~~~~~~~~~~l~~~n~~lv~~ln~~~~~ll~--r--~~~~~~ 223 (701)
T TIGR01667 149 IWFLLFPNQPLQESLSRLYRELAEYLEAK-SSLFDPDQHTDPEKALLPLAVRNGKVVDALNQCKQQLLM--R--LRGNRT 223 (701)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHH--H--hcCCCC
Confidence 99999999999999999999999998743 23444322211111111100 0 11111111 112211 1 111110
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHhcCCCC
Q 036990 284 RFRHPWKKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDA-----CINMSSEAVKALKELAFSIKTMTKPC 358 (457)
Q Consensus 284 ~~~~p~~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~-----~~~l~~~~~~~L~~La~al~~~~~~~ 358 (457)
......+.++.-....+.+++.+.+ ...+++++.+... ++++....++.+++++.++...++.+
T Consensus 224 --~~~~~rll~~y~~A~di~E~a~ss~---------~~Y~~L~~~f~~sd~l~~~~~ll~~~a~a~~~la~ai~~~~~~~ 292 (701)
T TIGR01667 224 --DPLTKRMLRYYFEAQDIHERASSSH---------HQYQELQELFEHSDVLFRIQRLLQTQAQACQVLARDILLRQPYY 292 (701)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHhcc---------CCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 0111222222222233333332221 1234455554433 77777788899999999999866543
Q ss_pred CCCccchHHHHHHHHHHHHHh
Q 036990 359 SADSHITKSKIAAKNLKSLLS 379 (457)
Q Consensus 359 ~~~~~~~~~~~a~~~L~~~l~ 379 (457)
+-++.+.+.+.++..+.
T Consensus 293 ----~~~~~~~~~~~l~~sl~ 309 (701)
T TIGR01667 293 ----HRLRTERALEKQIAALE 309 (701)
T ss_pred ----CCchHHHHHHHHHHHHH
Confidence 23445666666666653
No 19
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=98.79 E-value=2.2e-05 Score=86.43 Aligned_cols=176 Identities=14% Similarity=0.205 Sum_probs=111.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036990 49 RRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGAHHLASLPG 128 (457)
Q Consensus 49 ~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~~g 128 (457)
..+.+++|+.+|+..+.++.+... ..+-+.=+.+.++...-.+..+.+..-+.+++-|++...++.+...+. +
T Consensus 6 ~~~~~~lri~ia~~~~~~~~~~~~----~~~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll--~- 78 (704)
T TIGR01666 6 AKVIYTIPIFIALNGAAVGIWFFD----ISSQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELL--F- 78 (704)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhC----chhHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--h-
Confidence 467899999999988866544322 111333344555555555777777777888888888888887776553 3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 036990 129 EKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLI--SVSAYHDDEVMRIAYERVITILIGIFTALFVC 206 (457)
Q Consensus 129 ~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv--~l~~~~~~~~~~~a~~R~~~i~iG~~ia~lv~ 206 (457)
+.|+++++.+++.+++++++.. +.+|| +. +++.|..+. .+.+...+. ..+...+..++|.++-.+++
T Consensus 79 --~~p~lf~~~l~~~tf~~~mlga---~G~Ry--a~-Iaf~tLliaiytmlg~~~~~---~w~~~pllll~GalwY~lls 147 (704)
T TIGR01666 79 --GKPWLFAVGLTVSTFGFIMLGA---VGQRY--AT-IAFGSLLVALYTMLGYIEVN---VWFIQPVMLLCGTLWYSVVT 147 (704)
T ss_pred --cCcHHHHHHHHHHHHHHHHHHH---hhhhH--HH-HHHHHHHHHHHHHhcccccc---hHHHHHHHHHHHHHHHHHHH
Confidence 2344454555444444444433 33444 22 222222211 111221111 23446788899999999999
Q ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Q 036990 207 IFICPVWAGDDLHSLVANNIDKLANFFEAFVPLYLKI 243 (457)
Q Consensus 207 ~~i~P~~a~~~l~~~l~~~l~~~~~~l~~~~~~~~~~ 243 (457)
++.|+.+..+-+++.++++++.+++|++.- ..++++
T Consensus 148 l~~~~l~p~rp~q~~LA~~y~~La~yL~ak-a~lf~p 183 (704)
T TIGR01666 148 LIVHLFFPNRPVQENLAKAFCQLAEYLETK-SCFFDP 183 (704)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHH-HhhCCC
Confidence 999999999999999999999999999753 234443
No 20
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=97.90 E-value=0.02 Score=62.69 Aligned_cols=164 Identities=20% Similarity=0.217 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcc--cChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036990 51 IIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFE--FSVGGTLSRGLNRGLATFLASALGFGAHHLASLPG 128 (457)
Q Consensus 51 ~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~--p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~~g 128 (457)
..-++|+++++.+++.++. ..+|+ .|.-+++.+.+++. -+...-.....+=+.||++|..+|++..++. +|.
T Consensus 353 ~~~glRa~~ai~~~~~fWI----~TgW~-~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~v-LP~ 426 (652)
T PRK10631 353 MINGWRTTLATALGTLFWL----WTGWT-SGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVI-IPN 426 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH----HccCc-hHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 4456788888887777653 34566 66666555444421 1222223333444589999998888875443 333
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036990 129 EKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSAYHDDEVMRIAYERVITILIGIFTALFVCIF 208 (457)
Q Consensus 129 ~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~lv~~~ 208 (457)
-++...++.++.....+ +..... .+++ ++.+-+.+.++..+.......-.+.....--+..++|+++|+++..+
T Consensus 427 i~~~f~lL~laLap~~~---~~g~~~-~~~~--~~~lg~~i~f~~~l~l~n~~~~d~~~FlN~alA~v~Gi~~A~l~f~l 500 (652)
T PRK10631 427 TQQSMLLLCISLGVLGF---FIGIEV-QKRR--LGSLGALASTINILVLDNPMTFHFSQFLDSALGQIVGCFLALIVILL 500 (652)
T ss_pred ccccHHHHHHHHHHHHH---HHHHHh-cccH--HHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223223232222211 111111 2333 33222223333222222111112455677778999999999999988
Q ss_pred cccccchHHHHHHHHHHH
Q 036990 209 ICPVWAGDDLHSLVANNI 226 (457)
Q Consensus 209 i~P~~a~~~l~~~l~~~l 226 (457)
+.|.......++.+....
T Consensus 501 irp~~~~r~~rrL~~~~~ 518 (652)
T PRK10631 501 VRDNSRDRTGRVLLNQFV 518 (652)
T ss_pred hCCCCHHHHHHHHHHHHH
Confidence 888866665655544433
No 21
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=96.13 E-value=0.29 Score=43.08 Aligned_cols=136 Identities=19% Similarity=0.380 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchH
Q 036990 54 SFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGAHHLASLPGEKGEP 133 (457)
Q Consensus 54 alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~~g~~~~~ 133 (457)
++|.+.+.+++..+.+ ..+++ .|+-+++-.++++.+.---+.+...+=+..+++-+..+.++. ..+++ .|
T Consensus 2 ~LRia~g~~l~l~~~~----~~~~~-~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~---~ll~~--~P 71 (140)
T PF11168_consen 2 ALRIAFGVTLGLFLSK----LFGWP-LPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLS---GLLQD--YP 71 (140)
T ss_pred eeehhHHHHHHHHHHH----HHCCC-chHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHhc--CC
Confidence 5788888888866654 45566 889999988888765555555555555566666555555543 23333 45
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036990 134 ILLGLFVFLLAAAVSFLRFFPEMK-ARYDYGLMIFILTFSLISVSA-YHDDEVMRIAYERVITILIGIFTALFVCIF 208 (457)
Q Consensus 134 ~~~~l~v~l~~~~~~~~~~~~~~~-~~y~~~~~v~~lT~~iv~l~~-~~~~~~~~~a~~R~~~i~iG~~ia~lv~~~ 208 (457)
....+.++++. +.+++...+ +++-.+. +..+...++...+ +++ ..+.++......|++++.++.++
T Consensus 72 ~~~~l~v~l~~----~~~f~~~~~~~~~l~~~-~~lv~~~ii~~f~~~~~----~~~~~l~~~l~~~~~iav~i~~l 139 (140)
T PF11168_consen 72 VVMLLLVFLLF----FWSFYRMSRGPKFLFGT-MLLVGLSIIPVFASYNT----ADAEDLILSLVLAILIAVLIAAL 139 (140)
T ss_pred HHHHHHHHHHH----HHHHHHHhCCCchHHHH-HHHHHHHHHHHHHhcCc----chHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444432 222222223 3333333 2223333333233 332 34677777888888888877653
No 22
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=84.66 E-value=4.7 Score=31.23 Aligned_cols=44 Identities=11% Similarity=0.262 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Q 036990 193 ITILIGIFTALFVCIFICPVWAGDDLHSLVANNIDKLANFFEAFV 237 (457)
Q Consensus 193 ~~i~iG~~ia~lv~~~i~P~~a~~~l~~~l~~~l~~~~~~l~~~~ 237 (457)
...++|.+++.++.+|+-|. .++++|+.+.+..+.+.+-.....
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~-sG~e~R~~l~~~~~~~~~~~~~~~ 46 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPK-SGKETREKLKDKAEDLKDKAKDLY 46 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999888884 688889999888887776665443
No 23
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=78.53 E-value=1.3e+02 Score=34.28 Aligned_cols=121 Identities=12% Similarity=0.209 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCChH
Q 036990 104 LNRGLATFLASALGFGAHHLASLPGEKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFILTFSLISVSAYHDDE 183 (457)
Q Consensus 104 ~~Ri~GTliG~~lg~~~~~l~~~~g~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~lT~~iv~l~~~~~~~ 183 (457)
+..+.|.-+|+.+|+++..+.++.+ ...++.+++..|. +.++..+|-+. ++..+. -++++..++.++.....+
T Consensus 189 ~a~~gG~~~Gaa~Gv~~Gli~~l~~-~~~~~~~~~~af~-GLlaG~fk~~g----K~g~~~-g~~l~~~il~~y~~~~~~ 261 (764)
T TIGR02865 189 ISYIGGSGAGAAGGVVIGVILGLAN-NANLYQIGVFGFA-GLLGGIFKELG----KIGTGI-GYLVGFLILAFYTQGSVA 261 (764)
T ss_pred HHHhcCchHhHHHHHHHHHHHHhcC-ccHHHHHHHHHHH-HHHHHhhccCC----cceeeH-HHHHHHHHHHHHhccchh
Confidence 3445566666666666665554443 2456666655443 33334433322 222222 234455555555422222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccc---------------------hHHHHHHHHHHHHHHHHHHHHHhHHH
Q 036990 184 VMRIAYERVITILIGIFTALFVCIFICPVWA---------------------GDDLHSLVANNIDKLANFFEAFVPLY 240 (457)
Q Consensus 184 ~~~~a~~R~~~i~iG~~ia~lv~~~i~P~~a---------------------~~~l~~~l~~~l~~~~~~l~~~~~~~ 240 (457)
. ... +.++++++++-+ +.|.+. .+++++...+-++..++.++.+.+.+
T Consensus 262 ~-~~~---~~e~~ia~~lFl-----l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~a~~~~~Ls~tf 330 (764)
T TIGR02865 262 F-SLA---LYEALIATLLFL-----LIPNKIYKKLERYLDGERKQPDLQEDYMRKVREIAAEKLEEFSEVFRELSNTF 330 (764)
T ss_pred H-HHH---HHHHHHHHHHHH-----HhhHHHHHHHHhhCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 446666655533 344211 12356667777777887777664433
No 24
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=71.22 E-value=18 Score=30.72 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Q 036990 192 VITILIGIFTALFVCIFICPVWAGDDLHSLVANNIDKLANFFEAF 236 (457)
Q Consensus 192 ~~~i~iG~~ia~lv~~~i~P~~a~~~l~~~l~~~l~~~~~~l~~~ 236 (457)
+.-+++|++++.++.+++-|.+ ++++|+.+.+..+.+-...+..
T Consensus 8 l~G~liGgiiGa~aaLL~AP~s-GkelR~~~K~~~~~~~~~ae~~ 51 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAPKS-GKELRKKLKKSGDALFELAEDK 51 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHhHHHHHHH
Confidence 4578999999999998777765 6778866666655555444433
No 25
>PRK11677 hypothetical protein; Provisional
Probab=69.99 E-value=19 Score=31.40 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhccccc-chHHHHHHHHHHHHHHHHHHHHHh
Q 036990 193 ITILIGIFTALFVCIFICPVW-AGDDLHSLVANNIDKLANFFEAFV 237 (457)
Q Consensus 193 ~~i~iG~~ia~lv~~~i~P~~-a~~~l~~~l~~~l~~~~~~l~~~~ 237 (457)
+..+||++|++++..+.-|.. ...++.+.+.+.-..+..|=+.+.
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~ 53 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELV 53 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999998766663 455677777777777766655553
No 26
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=68.65 E-value=82 Score=27.65 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=48.0
Q ss_pred cchHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhh
Q 036990 80 SAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGAHHLASLPGEKGEPILLGLFVFLLAAAVSFLRF 152 (457)
Q Consensus 80 ~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~~g~~~~~~~~~l~v~l~~~~~~~~~~ 152 (457)
-+.|+..-..-..--. |...+....=+.+...|.+.|.++.++....+.. .+....+.+++..+...+...
T Consensus 20 l~~W~~Figwa~yfa~-G~~~~~~~~~~~~~~~Gi~~a~~~~~~~~~~~~~-~~~~~~i~v~i~~~~m~~~~~ 90 (144)
T PF06496_consen 20 LPGWAGFIGWASYFAA-GGGKKGLKKSLASNLSGIVWAWLAILLSGLLGGN-GPLALAIVVGIFSFVMVYQAK 90 (144)
T ss_pred chHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHHHhc
Confidence 4478877666554444 8888888888999999999999988887665432 244445555555554444443
No 27
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=67.58 E-value=20 Score=31.41 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=23.7
Q ss_pred hHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036990 82 MWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGAH 121 (457)
Q Consensus 82 ~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~ 121 (457)
..+.++++.++.....+... ..+|++-|++|+.+|+++-
T Consensus 100 ~~a~v~~~~i~~~~~~~~~~-~~~r~l~t~iG~~va~lVN 138 (141)
T PF06081_consen 100 IVAAVTFVHILLSGSDSFSY-ALNRVLLTLIGIGVALLVN 138 (141)
T ss_pred hHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34445544444433333333 8888888888888888653
No 28
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.12 E-value=35 Score=28.54 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 036990 101 SRGLNRGLATFLASALGFGAHHLA 124 (457)
Q Consensus 101 ~~~~~Ri~GTliG~~lg~~~~~l~ 124 (457)
+-+..=+.|+++|+++|+++=+++
T Consensus 47 klssefIsGilVGa~iG~llD~~a 70 (116)
T COG5336 47 KLSSEFISGILVGAGIGWLLDKFA 70 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455789999999999876653
No 29
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=64.48 E-value=1.3e+02 Score=30.89 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036990 102 RGLNRGLATFLASALGFGA 120 (457)
Q Consensus 102 ~~~~Ri~GTliG~~lg~~~ 120 (457)
.+..-+++|+.|+.+++..
T Consensus 45 ~~ar~lLstia~smitv~~ 63 (371)
T PF10011_consen 45 DGARTLLSTIAGSMITVTG 63 (371)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444567777777777754
No 30
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=61.76 E-value=1.6e+02 Score=31.07 Aligned_cols=36 Identities=8% Similarity=-0.018 Sum_probs=25.8
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036990 92 FEFSVGGTLSRGLNRGLATFLASALGFGAHHLASLP 127 (457)
Q Consensus 92 ~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~~ 127 (457)
.+-+.|.--.....-+.|++.|++.|.+.=.+...+
T Consensus 93 iKIsFgfIpi~l~G~LFGP~~G~l~g~lsDlLg~if 128 (477)
T PRK12821 93 FRVTLELILVKISGLLFGPIIGIFSAATIDFLTVIF 128 (477)
T ss_pred EEEehhhHHHHHHHHHhhhHHHHHHHHHHHHHHhhc
Confidence 344667777777778899999999998765554333
No 31
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=54.44 E-value=55 Score=34.13 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036990 166 IFILTFSLISVSAYHDDEVMRIAYERVITILIGIFTALFVCIF 208 (457)
Q Consensus 166 v~~lT~~iv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~lv~~~ 208 (457)
-+++|..+++ .++.+..+.-...|.+.|++|+++|+.+..+
T Consensus 43 WavlTVvvvf--e~tvGatl~KG~nR~lGTl~aG~La~~~~~l 83 (406)
T PF11744_consen 43 WAVLTVVVVF--EPTVGATLSKGLNRGLGTLLAGILAFGVSWL 83 (406)
T ss_pred HHHhhhHhhc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777664 3345567778999999999999999988764
No 32
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=53.77 E-value=59 Score=28.04 Aligned_cols=44 Identities=9% Similarity=0.243 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhcccccc-hHHHHHHHHHHHHHHHHHHHHH
Q 036990 193 ITILIGIFTALFVCIFICPVWA-GDDLHSLVANNIDKLANFFEAF 236 (457)
Q Consensus 193 ~~i~iG~~ia~lv~~~i~P~~a-~~~l~~~l~~~l~~~~~~l~~~ 236 (457)
+..+||++|++++..+..+... ..++.+.+.+.=..+..|=+.+
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~yk~~V 48 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQYKQEV 48 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888877666633 2456777766666666664433
No 33
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=50.66 E-value=45 Score=22.47 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036990 392 MQAITVVSLLVDVVACTKKIAESVQELAS 420 (457)
Q Consensus 392 ~~~~~~as~l~e~~~~le~l~~~v~~L~~ 420 (457)
.+.+..+.+|+.+-.++|+|.+++++|..
T Consensus 8 FPi~va~yLL~R~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 8 FPIAVAIYLLVRIEKKLDELTESINELSE 36 (38)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677999999999999999999975
No 34
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=46.27 E-value=2.3e+02 Score=25.66 Aligned_cols=61 Identities=16% Similarity=0.060 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 036990 290 KKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDACINMSSEAVKALKELAFSIKTM 354 (457)
Q Consensus 290 ~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~al~~~ 354 (457)
..+..+..-+.++.++...+............. .....++.++...+.+.+.....++.+.
T Consensus 79 ~~~~~i~~~lErigD~~~~ia~~~~~~~~~~~~----~~~~~el~~m~~~v~~~l~~a~~al~~~ 139 (212)
T TIGR02135 79 ISIIKISSDLERIGDYAVNIAKRALRLKEEDAK----PKHLEELEKMGKLALKMLKDALDAFLNK 139 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC----CccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566667777888877776554211111111 2334557777777888888887777753
No 35
>PRK09776 putative diguanylate cyclase; Provisional
Probab=44.86 E-value=3.5e+02 Score=31.54 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 036990 108 LATFLASALG 117 (457)
Q Consensus 108 ~GTliG~~lg 117 (457)
.|-++|++++
T Consensus 47 ~~~~~~~~~~ 56 (1092)
T PRK09776 47 PGILLSCSLG 56 (1092)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 36
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=42.96 E-value=62 Score=27.03 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 036990 169 LTFSLISVSAYHDDEVMRIAYERVITILIGIFTALFVCIFICPV 212 (457)
Q Consensus 169 lT~~iv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~lv~~~i~P~ 212 (457)
+|..+++-+ +.++....+..|+..+++|+++++++.. +.|.
T Consensus 19 it~~~v~~~--~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~-~~~~ 59 (128)
T PF13515_consen 19 ITVVSVLSP--SYGATVNRAIQRILGTLIGVVLGLLLLY-LFPG 59 (128)
T ss_pred HHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 455555422 4566788999999999999999999874 4443
No 37
>PRK10263 DNA translocase FtsK; Provisional
Probab=40.66 E-value=7.5e+02 Score=30.04 Aligned_cols=14 Identities=21% Similarity=0.031 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHHHH
Q 036990 96 VGGTLSRGLNRGLA 109 (457)
Q Consensus 96 ~G~t~~~~~~Ri~G 109 (457)
+|+-+...+.-++|
T Consensus 67 VGA~LAD~L~~LFG 80 (1355)
T PRK10263 67 PGAWLADTLFFIFG 80 (1355)
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444443333
No 38
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=39.13 E-value=1.5e+02 Score=31.16 Aligned_cols=27 Identities=7% Similarity=-0.065 Sum_probs=11.5
Q ss_pred cchHHhhhhhhhcccChhHHHHHHHHH
Q 036990 80 SAMWAVLTVVVVFEFSVGGTLSRGLNR 106 (457)
Q Consensus 80 ~~~Wa~itv~vv~~p~~G~t~~~~~~R 106 (457)
-.|++.-.+++.+-..+.....|+..|
T Consensus 353 ~AYliAa~a~i~Li~~Y~~~vl~~~k~ 379 (430)
T PF06123_consen 353 LAYLIAALACIGLISLYLSSVLKSWKR 379 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 344444444444444444444444433
No 39
>PRK11715 inner membrane protein; Provisional
Probab=37.65 E-value=1.5e+02 Score=31.29 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHH
Q 036990 50 RIIHSFKVGLAIAL 63 (457)
Q Consensus 50 ~~~~alK~aiA~~l 63 (457)
+.-.|+|.|+-...
T Consensus 299 ~~~RA~KYgiLFI~ 312 (436)
T PRK11715 299 KTERAVKYAILFIA 312 (436)
T ss_pred HHHHHHhHHHHHHH
Confidence 33456666554443
No 40
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=36.77 E-value=2.6e+02 Score=23.69 Aligned_cols=60 Identities=17% Similarity=0.051 Sum_probs=35.8
Q ss_pred HHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHH
Q 036990 83 WAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGAHHLASLPGEKGEPILLGLFVFLLAAAVSF 149 (457)
Q Consensus 83 Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~~g~~~~~~~~~l~v~l~~~~~~~ 149 (457)
+...++++...|+.- ..+=.+=+.|.++++++|+++..+. ++ .++..++.+.+.+.....
T Consensus 6 ~gAsa~llf~~p~sp--~aqP~~vi~gh~isa~iG~~~~~~~---~~--~~~~~alav~lai~~M~~ 65 (120)
T PF04982_consen 6 FGASAVLLFGAPSSP--LAQPRNVIGGHLISALIGVLCVYLF---GD--PWWAAALAVGLAIVLMVL 65 (120)
T ss_pred HHHHHHHhhcCCCCc--hhchHHHHHHHHHHHHHHHHHHHHh---cc--HHHHHHHHHHHHHHHHHH
Confidence 455555556666533 3344455799999999999987663 32 334455666554443333
No 41
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=35.83 E-value=27 Score=35.15 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036990 104 LNRGLATFLASALGFGAHHL 123 (457)
Q Consensus 104 ~~Ri~GTliG~~lg~~~~~l 123 (457)
+-|+.|+++|+++|++...+
T Consensus 344 ~IrinGallG~liG~~~~~i 363 (367)
T PF04286_consen 344 WIRINGALLGGLIGLLQYLI 363 (367)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 45899999999999986544
No 42
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=35.21 E-value=2.7e+02 Score=27.54 Aligned_cols=29 Identities=7% Similarity=0.109 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 036990 184 VMRIAYERVITILIGIFTALFVCIFICPVW 213 (457)
Q Consensus 184 ~~~~a~~R~~~i~iG~~ia~lv~~~i~P~~ 213 (457)
-..-+..-+..+.+|+.+|-.|+. =.|..
T Consensus 187 ~it~aasilGl~vvGal~as~V~v-~~~l~ 215 (282)
T PRK11103 187 KLTEGASILGLFVMGALVNKWTHV-NIPLV 215 (282)
T ss_pred HHHHHHHHHHHHHHHHHhheeEEE-EEeEE
Confidence 345677788889999999998884 33544
No 43
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=35.14 E-value=2.2e+02 Score=28.12 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhh-hcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036990 49 RRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVV-VFEFSVGGTLSRGLNRGLATFLASALGFGAHHLA 124 (457)
Q Consensus 49 ~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~v-v~~p~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~ 124 (457)
.+..+++|.++-..++..++- +++.+.. .+|...|.-..-..+|.+-+--|.-.=+++..++
T Consensus 134 ARliygfRiSvLfgL~lT~~S--------------aliGv~~GA~qGyfgg~vdL~~QR~IEvws~mP~lyllii~a 196 (341)
T COG4239 134 ARLIYGFRISVLFGLSLTLIS--------------ALIGVLAGALQGYFGGWVDLLGQRFIEVWSGMPTLYLLIILA 196 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhhccchHHHHhhHHHHHhcCcHHHHHHHHH
Confidence 477899999887776643320 1111111 2455566666666677666655554444443333
No 44
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=33.95 E-value=1.6e+02 Score=21.98 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCcCCcchHHHHHHHHHHH-HHHHHHHhh
Q 036990 25 LPGKLMAKLVEFAKKTKRLGREDPRRIIHSFKVGLAI-ALVSLFYYF 70 (457)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~alK~aiA~-~la~~l~~~ 70 (457)
+.+.+++-+.+..|-+....+||...+....|.+... .+...++|+
T Consensus 6 ~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~ 52 (61)
T PRK09400 6 LQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFI 52 (61)
T ss_pred HHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777788889999888777654443 333444544
No 45
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=33.08 E-value=2.3e+02 Score=27.70 Aligned_cols=101 Identities=20% Similarity=0.212 Sum_probs=51.2
Q ss_pred hccc--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH
Q 036990 91 VFEF--SVGGTLSRGLNRGLATFLASALGFGAHHLASLPGEKGEPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIFI 168 (457)
Q Consensus 91 v~~p--~~G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~~g~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~~ 168 (457)
.|.| .+|+|+.-+..|.+-..+|+.+|.- |+.-.|++. ++++. . ..++|.+. .+..|..|.. .
T Consensus 98 LMGPlAGIGDSlf~gt~~pI~~~Ia~~lA~~--------Gn~lgpil~-~~~~~--~-~~~~~~~~-~~~GY~~G~~--~ 162 (263)
T PRK09855 98 LFGPIAGIGDAIFWFTLLPIMAGICSSFASQ--------GNLLGPILF-FAVYL--L-IFFLRVGW-THVGYSVGVK--A 162 (263)
T ss_pred HhccchhchhHHHHHHHHHHHHHHHHHHHhc--------CCcHHHHHH-HHHHH--H-HHHHHHHH-HHHHHHhHHH--H
Confidence 3666 5889998888887766555554441 211112211 11111 1 12233222 2233444431 1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 036990 169 LTFSLISVSAYHDDEVMRIAYERVITILIGIFTALFVCIFICPVW 213 (457)
Q Consensus 169 lT~~iv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~lv~~~i~P~~ 213 (457)
++. +.+ ..+-..-+..-+..+.+|+.++-.|+. =.|..
T Consensus 163 i~~----l~~--~~~~it~~asilGl~vvGal~as~V~i-~~~l~ 200 (263)
T PRK09855 163 IDK----VRE--NSQMIARSATILGITVIGGLIASYVHI-NVVTS 200 (263)
T ss_pred HHH----HHh--HHHHHHHHHHHHHHHHHHHHHHeeEEE-EEEEE
Confidence 111 112 113345677788889999999999884 33543
No 46
>PF15225 IL32: Interleukin 32
Probab=32.94 E-value=61 Score=25.98 Aligned_cols=30 Identities=7% Similarity=-0.024 Sum_probs=23.8
Q ss_pred CCccchHHHhhhhccchhHHHHHHHHHHHH
Q 036990 9 DNKEGMIFHFRGSIKSLPGKLMAKLVEFAK 38 (457)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (457)
+++..++-+..||++.+..+++.+...+..
T Consensus 34 eP~Esf~dkvmR~FqamlqrLQ~ww~~vlA 63 (104)
T PF15225_consen 34 EPGESFCDKVMRWFQAMLQRLQTWWQAVLA 63 (104)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466779999999999998888887664443
No 47
>COG5547 Small integral membrane protein [Function unknown]
Probab=32.61 E-value=2e+02 Score=21.31 Aligned_cols=24 Identities=4% Similarity=-0.070 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036990 100 LSRGLNRGLATFLASALGFGAHHL 123 (457)
Q Consensus 100 ~~~~~~Ri~GTliG~~lg~~~~~l 123 (457)
+++...|++|-++|.++|.++..+
T Consensus 4 lk~fkypIIgglvglliAili~t~ 27 (62)
T COG5547 4 LKKFKYPIIGGLVGLLIAILILTF 27 (62)
T ss_pred HHHhccchHHHHHHHHHHHHHHHH
Confidence 566778899999999999876533
No 48
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=32.12 E-value=3.4e+02 Score=26.71 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 036990 184 VMRIAYERVITILIGIFTALFVCIFICPVW 213 (457)
Q Consensus 184 ~~~~a~~R~~~i~iG~~ia~lv~~~i~P~~ 213 (457)
-..-+..-+..+++|+.+|-.|+. =.|..
T Consensus 177 ~it~~a~ilGl~vvGal~as~V~v-~~~l~ 205 (271)
T TIGR00828 177 KLTEGASILGLFVMGALVAKWTHI-NVPLV 205 (271)
T ss_pred HHHHHHHHHHHHHHHHHhheeEEE-EEeEE
Confidence 345577778889999999998884 33543
No 49
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=30.81 E-value=4.5e+02 Score=25.68 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 036990 185 MRIAYERVITILIGIFTALFVCIFICPV 212 (457)
Q Consensus 185 ~~~a~~R~~~i~iG~~ia~lv~~~i~P~ 212 (457)
+..+..-+..+++|+.++..|+. -.|.
T Consensus 176 i~~~asilGl~vvGal~as~V~v-~~~l 202 (264)
T PF03613_consen 176 ITEAASILGLMVVGALIASYVNV-STPL 202 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHeEEE-eeeE
Confidence 45567777888999999998884 4453
No 50
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=30.51 E-value=6.5e+02 Score=26.83 Aligned_cols=37 Identities=16% Similarity=-0.102 Sum_probs=20.1
Q ss_pred cChhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCC
Q 036990 94 FSVGGTLSRGLNRGLATFLA-SALGFGAHHLASLPGEK 130 (457)
Q Consensus 94 p~~G~t~~~~~~Ri~GTliG-~~lg~~~~~l~~~~g~~ 130 (457)
++..+-.+-.-.|..+..+| .+++++...+...+|+.
T Consensus 142 ~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~ 179 (467)
T COG2211 142 QDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG 179 (467)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34445555555666666666 44455444555555543
No 51
>PLN00064 photosystem II protein Psb27; Provisional
Probab=29.50 E-value=4.2e+02 Score=23.85 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHH
Q 036990 290 KKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDACINM 336 (457)
Q Consensus 290 ~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~~~~l 336 (457)
..|..|.+.++.++.|-.+. ....+.|+.+++++.+|+++.
T Consensus 118 ~SFttMyTALNaLAGHY~Sf------gpnrPlPeKlK~RL~qE~~~A 158 (166)
T PLN00064 118 PSFRDMYSALNAVSGHYISF------GPTAPIPAKRKARILEEMDTA 158 (166)
T ss_pred ccHHHHHHHHHHHHHHhhcc------CCCCCCcHHHHHHHHHHHHHH
Confidence 45666655555444433222 124578999999888887654
No 52
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=27.40 E-value=3.7e+02 Score=22.48 Aligned_cols=16 Identities=13% Similarity=0.114 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 036990 190 ERVITILIGIFTALFV 205 (457)
Q Consensus 190 ~R~~~i~iG~~ia~lv 205 (457)
.|-.+.+..+++.++.
T Consensus 63 ~~~~n~lf~~~i~~ll 78 (115)
T PF10066_consen 63 GRPPNLLFYLGILFLL 78 (115)
T ss_pred CchhHHHHHHHHHHHH
Confidence 3444444444444433
No 53
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=27.15 E-value=4.4e+02 Score=23.27 Aligned_cols=20 Identities=15% Similarity=0.100 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 036990 107 GLATFLASALGFGAHHLASL 126 (457)
Q Consensus 107 i~GTliG~~lg~~~~~l~~~ 126 (457)
++|+..|+++|.+...+...
T Consensus 48 l~Gp~~G~ivg~ig~~l~dl 67 (169)
T PF07155_consen 48 LFGPKYGAIVGAIGDLLSDL 67 (169)
T ss_pred HHChHHHHHHHHHHHHHHHH
Confidence 46677776666655545443
No 54
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=26.79 E-value=4.3e+02 Score=23.08 Aligned_cols=40 Identities=10% Similarity=0.255 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHH
Q 036990 290 KKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDACINM 336 (457)
Q Consensus 290 ~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~~~~l 336 (457)
+.|..|.++++.++.|-.. -...+.|+.++.++.+|+++.
T Consensus 89 ~SFttm~TALNsLAGHY~s-------y~~rPlPeklk~Rl~~El~~A 128 (135)
T TIGR03044 89 SSFTTMQTALNSLAGHYKS-------YANRPLPEKLKERLEKELKKA 128 (135)
T ss_pred ccHHHHHHHHHHHHHHhcc-------CCCCCCCHHHHHHHHHHHHHH
Confidence 4566666655544443322 224678999999888887644
No 55
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=26.77 E-value=1e+03 Score=27.29 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Q 036990 194 TILIGIFTALFVCIFICPVWAGDDLHSLVANNIDKLANFFEAF 236 (457)
Q Consensus 194 ~i~iG~~ia~lv~~~i~P~~a~~~l~~~l~~~l~~~~~~l~~~ 236 (457)
-+++|++++++.|-.+- ..-++....+.+.++++..|+...
T Consensus 152 ~il~g~i~aF~~n~~l~--~~v~~~~~~~~~~~~Dl~~~l~~~ 192 (806)
T PF05478_consen 152 IILFGVICAFVANQQLS--TGVDDTPNTVNSTLDDLRTFLNDT 192 (806)
T ss_pred HHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHhh
Confidence 44788888887775431 222345566667777777776644
No 56
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=26.75 E-value=1.2e+02 Score=27.97 Aligned_cols=18 Identities=6% Similarity=-0.116 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036990 104 LNRGLATFLASALGFGAH 121 (457)
Q Consensus 104 ~~Ri~GTliG~~lg~~~~ 121 (457)
+..+.++++|+.++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (199)
T PF10112_consen 5 IRFIFRWILGVLIAAITF 22 (199)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555554443
No 57
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=26.62 E-value=64 Score=27.38 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036990 107 GLATFLASALGFGAHHL 123 (457)
Q Consensus 107 i~GTliG~~lg~~~~~l 123 (457)
+.|+++|+++|.+...+
T Consensus 8 l~G~liGgiiGa~aaLL 24 (115)
T COG4980 8 LFGILIGGIIGAAAALL 24 (115)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57888888888876544
No 58
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=26.28 E-value=2.5e+02 Score=20.14 Aligned_cols=18 Identities=6% Similarity=0.010 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036990 104 LNRGLATFLASALGFGAH 121 (457)
Q Consensus 104 ~~Ri~GTliG~~lg~~~~ 121 (457)
..|++|.++|.++|+++.
T Consensus 8 ~~~iiG~~~G~ila~l~l 25 (51)
T PF10031_consen 8 RGKIIGGLIGLILALLIL 25 (51)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 346677777777776653
No 59
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=26.19 E-value=7.8e+02 Score=25.86 Aligned_cols=69 Identities=12% Similarity=0.052 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccc-CcchHHhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 036990 52 IHSFKVGLAIALVSLFYYFEPLYKGFG-ISAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLASALGFGA 120 (457)
Q Consensus 52 ~~alK~aiA~~la~~l~~~~~~~~~~~-~~~~Wa~itv~vv~~p~~G~t~~~~~~Ri~GTliG~~lg~~~ 120 (457)
.+.+|.-+=..++.++++..-.-.... .-|--.-+..++.+-...|..+.+.+...+.+++|.++|++.
T Consensus 13 ~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~ 82 (459)
T PF10337_consen 13 RRSLKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAW 82 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666665554432110000 011122233444444566666666666666666666666653
No 60
>PHA02102 hypothetical protein
Probab=25.04 E-value=1.1e+02 Score=23.05 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcc
Q 036990 401 LVDVVACTKKIAESVQELASFAKFKS 426 (457)
Q Consensus 401 l~e~~~~le~l~~~v~~L~~~~~F~~ 426 (457)
|.+-.-+|++|...|+.|+++.+|-.
T Consensus 7 LvekA~eLqkLl~eV~dlAse~~yGv 32 (72)
T PHA02102 7 LVEKALELQKLLKEVKDLASEQDYGV 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccce
Confidence 45666788999999999999999987
No 61
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=24.43 E-value=6.6e+02 Score=24.42 Aligned_cols=19 Identities=5% Similarity=0.043 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 036990 295 IGSQTRDCAYRIESLNGYL 313 (457)
Q Consensus 295 i~~~~~~~~~~l~aL~~~~ 313 (457)
+...++.+...++.++..+
T Consensus 211 ~~~~l~~~a~~l~~ia~ai 229 (284)
T PF12805_consen 211 FQRLLEQLAQALRQIAQAI 229 (284)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666
No 62
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=23.70 E-value=7.1e+02 Score=28.61 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 036990 193 ITILIGIFTALFVCIFICPV 212 (457)
Q Consensus 193 ~~i~iG~~ia~lv~~~i~P~ 212 (457)
..+.+|+++++++++++.|.
T Consensus 835 ~~~~~gi~~~l~~~l~~lPa 854 (862)
T TIGR03480 835 ILLSLGLGLTLLCTLIFLPA 854 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35567777777777777774
No 63
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=23.66 E-value=1.5e+02 Score=22.62 Aligned_cols=17 Identities=6% Similarity=-0.199 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036990 106 RGLATFLASALGFGAHH 122 (457)
Q Consensus 106 Ri~GTliG~~lg~~~~~ 122 (457)
-+.||++|++++.++.+
T Consensus 52 W~~r~iiGaiI~~i~~~ 68 (71)
T PF10779_consen 52 WIWRTIIGAIITAIIYL 68 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35667778777776543
No 64
>PRK11660 putative transporter; Provisional
Probab=23.54 E-value=3.7e+02 Score=29.26 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 036990 193 ITILIGIFTALFVCIF 208 (457)
Q Consensus 193 ~~i~iG~~ia~lv~~~ 208 (457)
..+..|++++++++.+
T Consensus 424 ~~~~~gi~~Gi~~s~~ 439 (568)
T PRK11660 424 FDMVIAISVGIVLASL 439 (568)
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3444566666655543
No 65
>COG4041 Predicted membrane protein [Function unknown]
Probab=23.42 E-value=2.1e+02 Score=24.90 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCc
Q 036990 52 IHSFKVGLAIALVSLFYYFEPLYKGFGIS 80 (457)
Q Consensus 52 ~~alK~aiA~~la~~l~~~~~~~~~~~~~ 80 (457)
..-+|..+|..++++=+.+.+.|+++++.
T Consensus 7 ~eiv~i~~a~~i~wlnfv~idt~mglpek 35 (171)
T COG4041 7 VEIVKIIIAGIICWLNFVLIDTYMGLPEK 35 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 45678888888887655556667777743
No 66
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=23.05 E-value=3.8e+02 Score=29.26 Aligned_cols=17 Identities=12% Similarity=0.550 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 036990 192 VITILIGIFTALFVCIF 208 (457)
Q Consensus 192 ~~~i~iG~~ia~lv~~~ 208 (457)
+.++..|+.++++.+.+
T Consensus 392 ~~~l~~GV~vGi~ls~~ 408 (554)
T COG0659 392 FFDLVIGVVVGILLACL 408 (554)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666666543
No 67
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.77 E-value=5.1e+02 Score=22.51 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhcccccchH--HHHHHHHHHHHHHHHHHHHH
Q 036990 193 ITILIGIFTALFVCIFICPVWAGD--DLHSLVANNIDKLANFFEAF 236 (457)
Q Consensus 193 ~~i~iG~~ia~lv~~~i~P~~a~~--~l~~~l~~~l~~~~~~l~~~ 236 (457)
+..++|++|++++.. +-|...+. ++.+.+.+.=..+-.+=+.+
T Consensus 13 igLvvGi~IG~li~R-lt~~~~k~q~~~q~ELe~~K~~ld~~rqel 57 (138)
T COG3105 13 IGLVVGIIIGALIAR-LTNRKLKQQQKLQYELEKVKAQLDEYRQEL 57 (138)
T ss_pred HHHHHHHHHHHHHHH-HcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677777777776 44555554 45555554444444443333
No 68
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=22.77 E-value=4.7e+02 Score=29.99 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 036990 166 IFILTFSLISVSAYHDDEVMRIAYERVITILIGIFTALFVC 206 (457)
Q Consensus 166 v~~lT~~iv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~lv~ 206 (457)
+.+-|+.+.++........+.--..|+.+=+.|.+|+++.-
T Consensus 450 VglW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi 490 (876)
T KOG1172|consen 450 VGLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFI 490 (876)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444444433233445556778888889998888754
No 69
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=22.77 E-value=7.9e+02 Score=25.82 Aligned_cols=17 Identities=6% Similarity=0.002 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 036990 108 LATFLASALGFGAHHLA 124 (457)
Q Consensus 108 ~GTliG~~lg~~~~~l~ 124 (457)
+|.+.|.++|++.+.++
T Consensus 361 v~~~~g~~~g~~~~~~~ 377 (449)
T TIGR00400 361 VSILVGAILASVNFLRI 377 (449)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666665554443
No 70
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=22.51 E-value=1.1e+03 Score=26.88 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccch-HHHHHHHHHHHHHHHHHHHH
Q 036990 191 RVITILIGIFTALFVCIFICPVWAG-DDLHSLVANNIDKLANFFEA 235 (457)
Q Consensus 191 R~~~i~iG~~ia~lv~~~i~P~~a~-~~l~~~l~~~l~~~~~~l~~ 235 (457)
-++..+||+++++.-|-- ...+ ++..+.+.+..+++..++++
T Consensus 162 l~i~~ligv~~~fvtnk~---v~~~i~~s~~~m~~~~~dl~t~lrd 204 (865)
T KOG4331|consen 162 LAIELLIGVFRAFVTNKP---VMLRIKNSLEDMRRLATDLRTYLRD 204 (865)
T ss_pred HHHHHHHHHHHHHHHhhH---HHHhhhccHHHHHHHHHHHHHHHhc
Confidence 345667888888876642 2111 22344555555666666554
No 71
>COG3781 Predicted membrane protein [Function unknown]
Probab=22.48 E-value=7.5e+02 Score=24.32 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=23.0
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 036990 275 GWEPGHGKFRFRHPWKKYLKIGSQTRDCAYRIESLNGYLI 314 (457)
Q Consensus 275 ~~Ep~~~~~~~~~p~~~y~~i~~~~~~~~~~l~aL~~~~~ 314 (457)
|-+|......-.-|.+.|+++.+....-...+--++.++.
T Consensus 132 R~qp~~~~l~a~l~~~~~~kv~a~~npp~ei~~wmGe~l~ 171 (306)
T COG3781 132 RKQPQNEDLAALLPTSDYEKVLASNNPPLEIALWMGEWLQ 171 (306)
T ss_pred hCCCchHHHHHhcCHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3445443322234667788887766665666656666663
No 72
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=22.43 E-value=3.7e+02 Score=26.47 Aligned_cols=17 Identities=6% Similarity=-0.072 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036990 104 LNRGLATFLASALGFGA 120 (457)
Q Consensus 104 ~~Ri~GTliG~~lg~~~ 120 (457)
..=++|.++|++.+.++
T Consensus 34 ~Rll~~A~~Gal~~~~~ 50 (293)
T PF03419_consen 34 WRLLLGAAIGALYSLLI 50 (293)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34467888888887764
No 73
>COG2733 Predicted membrane protein [Function unknown]
Probab=21.99 E-value=40 Score=34.61 Aligned_cols=19 Identities=16% Similarity=0.020 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036990 105 NRGLATFLASALGFGAHHL 123 (457)
Q Consensus 105 ~Ri~GTliG~~lg~~~~~l 123 (457)
-|+=||++||++|+++..+
T Consensus 392 IRiNGtvVGG~~Gllly~I 410 (415)
T COG2733 392 IRINGTVVGGIAGLLLYAI 410 (415)
T ss_pred EeEcCchHHHHHHHHHHHH
Confidence 3788999999999987654
No 74
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=21.18 E-value=7.1e+02 Score=23.54 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=31.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHH
Q 036990 285 FRHPWKKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQD 331 (457)
Q Consensus 285 ~~~p~~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~ 331 (457)
.+.+.+.+..+...+..+++.++.-+..+..+. ...|++++..+.+
T Consensus 75 lP~~R~Dil~L~~~~D~i~D~~ed~A~~l~l~~-~~ip~~~~e~~~~ 120 (217)
T COG1392 75 LPFDREDILELIESQDDIADAAEDAAKLLLLRK-PFIPEELDEEFLR 120 (217)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cCCCcchHHHHHH
Confidence 456778888899988999998887766653333 3356666665544
No 75
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=21.04 E-value=51 Score=22.65 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 036990 109 ATFLASALGFGAH 121 (457)
Q Consensus 109 GTliG~~lg~~~~ 121 (457)
||++|++++-++-
T Consensus 2 G~~~Ga~~Ga~~G 14 (42)
T PF05433_consen 2 GALIGAAVGAVAG 14 (42)
T ss_pred chHHHHHHHHHHH
Confidence 3444444444443
No 76
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=21.01 E-value=8.7e+02 Score=24.51 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036990 102 RGLNRGLATFLASALGFGAH 121 (457)
Q Consensus 102 ~~~~Ri~GTliG~~lg~~~~ 121 (457)
+.+-|++=+++|+++|+...
T Consensus 3 ~~ii~l~~~i~g~~lG~~~~ 22 (356)
T COG4956 3 KWIIILLFIIIGAVLGFAVI 22 (356)
T ss_pred HHHHHHHHHHHHhhhhHhhH
Confidence 45678888999999998865
No 77
>COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]
Probab=21.00 E-value=2.6e+02 Score=29.36 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH-HHH
Q 036990 97 GGTLSRGLNRGLATFLASALGFGAHHLASLPGEKG-----EPILLGLFVFLLAAAVSFLRFFPEMKARYDYGLMIF-ILT 170 (457)
Q Consensus 97 G~t~~~~~~Ri~GTliG~~lg~~~~~l~~~~g~~~-----~~~~~~l~v~l~~~~~~~~~~~~~~~~~y~~~~~v~-~lT 170 (457)
..-.-+.-+|..|-+...+.++ .+...+.... -.+.+++.+..|+++.+++|. -++++. ++.
T Consensus 93 Al~aL~rTnrla~~iA~~Ft~W---SlaL~pyGDAYtrshiAFYMaITVIaCIFCLMhlRs---------AAi~VT~iVn 160 (663)
T COG5001 93 ALRALARTNRLAGFIAALFTGW---SLALYPYGDAYTRSHIAFYMAITVIACIFCLMHLRS---------AAILVTLIVN 160 (663)
T ss_pred HHHHHHhhhhHHHHHHHHHHHh---HhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhheeeeeec
Confidence 3333445556655554444444 3432222110 123456666667777776553 122111 011
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036990 171 FSLISVSAYHDDEVMRIAYERVITILIGIFTALFVCI 207 (457)
Q Consensus 171 ~~iv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~lv~~ 207 (457)
-+.|.+.+...+..|.....-+.-+..|..+-+++||
T Consensus 161 GafiaFF~atgQPtFiAiAiNi~lVsagm~vILltnY 197 (663)
T COG5001 161 GAFIAFFGATGQPTFIAIAINIVLVSAGMIVILLTNY 197 (663)
T ss_pred CceeEEEecCCCcchhHHHHHHHHHHHhHHHHHHhhh
Confidence 1112222323344454444455566666666666654
No 78
>PF08893 DUF1839: Domain of unknown function (DUF1839); InterPro: IPR014989 This group of proteins are functionally uncharacterised.
Probab=20.04 E-value=2.9e+02 Score=27.64 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCccchHHHHHHHHHHHHHh
Q 036990 329 MQDACINMSSEAVKALKELAFSIKTMTKPCSADSHITKSKIAAKNLKSLLS 379 (457)
Q Consensus 329 ~~~~~~~l~~~~~~~L~~La~al~~~~~~~~~~~~~~~~~~a~~~L~~~l~ 379 (457)
..+.|.+++.+...+-..|+.++...++.. .+..+..+..+-+++...|.
T Consensus 268 aa~a~~~ias~Ak~~QFrLARAv~r~r~~~-~~~~Ld~~~~ay~~~~~~L~ 317 (319)
T PF08893_consen 268 AAEACRTIASEAKVVQFRLARAVARGRFDD-CEDCLDPMEAAYDRAMDGLA 317 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHHHHHHHHh
Confidence 556789999999888899999988777664 33335667777777766654
No 79
>TIGR00930 2a30 K-Cl cotransporter.
Probab=20.03 E-value=1.4e+03 Score=26.69 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=19.7
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036990 93 EFSVGGTLSRGLNRGLATFLASALGFGAH 121 (457)
Q Consensus 93 ~p~~G~t~~~~~~Ri~GTliG~~lg~~~~ 121 (457)
.|..|+.+ --+.|.+|..+|+.+|+..+
T Consensus 139 ~p~aGG~Y-~yisralGp~~Gf~iG~~~~ 166 (953)
T TIGR00930 139 VVKGGGAY-YLISRSLGPEFGGSIGLIFA 166 (953)
T ss_pred CCCccHHH-HHHHHHhCcHHHHHHHHHHH
Confidence 34444444 45678899999999998754
Done!