Query 036990
Match_columns 457
No_of_seqs 325 out of 1752
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 12:20:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t72_A Phosphate transport sys 35.2 2.3E+02 0.0079 24.8 11.0 60 289-353 84-143 (227)
2 4dx5_A Acriflavine resistance 28.2 4.8E+02 0.017 29.0 13.2 20 193-212 1005-1024(1057)
3 1xwm_A PHOU, phosphate uptake 27.4 3.1E+02 0.011 23.8 12.8 62 289-355 80-141 (217)
4 3ne5_A Cation efflux system pr 24.1 3.2E+02 0.011 30.5 10.7 21 192-212 1020-1040(1054)
5 1sum_B Phosphate transport sys 17.7 5.1E+02 0.017 22.8 11.6 60 289-353 80-139 (235)
6 3ne5_A Cation efflux system pr 15.2 8.4E+02 0.029 27.0 11.6 26 189-214 483-508 (1054)
7 4h33_A LMO2059 protein; bilaye 13.8 4.6E+02 0.016 21.3 6.8 25 67-91 34-58 (137)
8 2olt_A Hypothetical protein; s 13.5 6.5E+02 0.022 22.0 20.6 63 287-354 81-143 (227)
9 4dx5_A Acriflavine resistance 13.3 1.3E+03 0.045 25.4 15.2 20 193-212 472-491 (1057)
10 2ww9_B Protein transport prote 13.2 4.3E+02 0.015 19.8 6.0 49 22-70 18-67 (80)
No 1
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=35.16 E-value=2.3e+02 Score=24.82 Aligned_cols=60 Identities=17% Similarity=0.000 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 036990 289 WKKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDACINMSSEAVKALKELAFSIKT 353 (457)
Q Consensus 289 ~~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~al~~ 353 (457)
...|.++...+.++.++..++............+ + ...++.++...+...+...-.++.+
T Consensus 84 ~~~~l~i~~~lERIgD~a~nIa~~~~~~~~~~~~-~----~~~el~~m~~~v~~ml~~a~~a~~~ 143 (227)
T 1t72_A 84 IMGIYKIVSDLERMGDEAENIAERAILLAEEPPL-K----PYVNINFMSEIVKEMVNDSVISFIQ 143 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS-S----CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-c----hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777788888888887776554211111111 1 1133566666666777766667664
No 2
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=28.16 E-value=4.8e+02 Score=29.01 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 036990 193 ITILIGIFTALFVCIFICPV 212 (457)
Q Consensus 193 ~~i~iG~~ia~lv~~~i~P~ 212 (457)
..+++|++++++++.++.|.
T Consensus 1005 ~~~~~Gl~~s~~~tl~~~P~ 1024 (1057)
T 4dx5_A 1005 TGVMGGMVTATVLAIFFVPV 1024 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888775
No 3
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=27.37 E-value=3.1e+02 Score=23.84 Aligned_cols=62 Identities=11% Similarity=-0.052 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 036990 289 WKKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDACINMSSEAVKALKELAFSIKTMT 355 (457)
Q Consensus 289 ~~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~al~~~~ 355 (457)
...+..+...+.++.++..++............++. ..++..+...+...+.....++.+..
T Consensus 80 ~~~~l~i~~~lERIgD~a~nIa~~~~~~~~~~~~~~-----~~~l~~m~~~v~~~l~~a~~a~~~~d 141 (217)
T 1xwm_A 80 IVAAIKIASDIERIADFAVNIAKACIRIGGQPFVMD-----IGPLVLMYRLATDMVSTAIAAYDRED 141 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSC-----CHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456677777788888888877765532111112221 13466777777778887777877643
No 4
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=24.15 E-value=3.2e+02 Score=30.52 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 036990 192 VITILIGIFTALFVCIFICPV 212 (457)
Q Consensus 192 ~~~i~iG~~ia~lv~~~i~P~ 212 (457)
-..+++|++++++++.++.|.
T Consensus 1020 ~~~~~~Gl~~s~~~tl~v~P~ 1040 (1054)
T 3ne5_A 1020 AAPMIGGMITAPLLSLFIIPA 1040 (1054)
T ss_dssp THHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 356788999999999988885
No 5
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=17.72 E-value=5.1e+02 Score=22.77 Aligned_cols=60 Identities=8% Similarity=0.007 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 036990 289 WKKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDACINMSSEAVKALKELAFSIKT 353 (457)
Q Consensus 289 ~~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~al~~ 353 (457)
...+.++..-+.++.++...+..........+.+ +. ..++..+...+...+...-.++.+
T Consensus 80 i~~~l~i~~dlERIgD~a~~Ia~~~~~~~~~~~~-~~----~~~l~~m~~~v~~~l~~a~~a~~~ 139 (235)
T 1sum_B 80 VTAGIRVAELIENIADKCHDIAKNVLELMEEPPL-KP----LEDIPAMANQTSEMLKFALRMFAD 139 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC-SC----CSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-hH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777888888877776554221111112 11 123555666666666666666664
No 6
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=15.25 E-value=8.4e+02 Score=26.98 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Q 036990 189 YERVITILIGIFTALFVCIFICPVWA 214 (457)
Q Consensus 189 ~~R~~~i~iG~~ia~lv~~~i~P~~a 214 (457)
..=-..+++|+++++++++++.|.-.
T Consensus 483 ~~~~~~~~~gl~~s~~~~l~~~P~l~ 508 (1054)
T 3ne5_A 483 GPLAFTKTYAMAGAALLAIVVIPILM 508 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345678899999999999888643
No 7
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=13.80 E-value=4.6e+02 Score=21.28 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=13.4
Q ss_pred HHhhhhccccccCcchHHhhhhhhh
Q 036990 67 FYYFEPLYKGFGISAMWAVLTVVVV 91 (457)
Q Consensus 67 l~~~~~~~~~~~~~~~Wa~itv~vv 91 (457)
+++..+..+.+.+.-||+++|..-|
T Consensus 34 ~~~~e~~~~~~~~a~y~~~~T~tTv 58 (137)
T 4h33_A 34 MVFIEPEINNYPDALWWAIVTATTV 58 (137)
T ss_dssp HHHHCSSCCSHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcc
Confidence 3444443334443557888776655
No 8
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=13.46 E-value=6.5e+02 Score=21.96 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=38.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 036990 287 HPWKKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDACINMSSEAVKALKELAFSIKTM 354 (457)
Q Consensus 287 ~p~~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~al~~~ 354 (457)
.+.+.+..+...+.++++++......+... ....|++.+.. +..+...+.+....+..++...
T Consensus 81 ~dredi~~L~~~lD~I~D~~~~~a~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ai~~l 143 (227)
T 2olt_A 81 VERTDLLELLTQQDKIANKAKDISGRVIGR-QLLIPQALQVP----FIAYLQRCIDAVGLAQQVINEL 143 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888999999998887766432 33456655433 3444444444455555554443
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=13.30 E-value=1.3e+03 Score=25.42 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 036990 193 ITILIGIFTALFVCIFICPV 212 (457)
Q Consensus 193 ~~i~iG~~ia~lv~~~i~P~ 212 (457)
..+++|+++++++++++.|.
T Consensus 472 ~~~~~gl~~s~~~~l~~~P~ 491 (1057)
T 4dx5_A 472 ITIVSAMALSVLVALILTPA 491 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888887774
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=13.21 E-value=4.3e+02 Score=19.80 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=31.3
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCcCCcchHHHHHHHHHH-HHHHHHHHhh
Q 036990 22 IKSLPGKLMAKLVEFAKKTKRLGREDPRRIIHSFKVGLA-IALVSLFYYF 70 (457)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~alK~aiA-~~la~~l~~~ 70 (457)
+....+.+++-+.+..|-+....+||...+....|.+.. .++..+++|+
T Consensus 18 ~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 18 VEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp ---CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777777777788888999988876665443 3344445554
Done!