Query 036990
Match_columns 457
No_of_seqs 325 out of 1752
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 12:20:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036990.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036990hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 18.7 54 0.0039 28.2 4.6 8 160-167 55-62 (248)
2 d1sumb_ a.7.12.1 (B:) PhoU hom 16.4 2.5E+02 0.018 22.5 11.8 27 399-425 180-206 (225)
3 d1xwma_ a.7.12.1 (A:) Phosphat 13.1 2.9E+02 0.021 21.6 12.7 58 291-353 79-136 (212)
4 d1u5ta1 a.4.5.54 (A:20-164) Va 10.5 2.9E+02 0.021 21.2 6.5 38 298-337 16-53 (145)
5 d1vcta1 a.7.12.1 (A:9-107) Hyp 10.0 2.6E+02 0.019 19.2 6.9 24 399-422 71-94 (99)
6 d1t72a_ a.7.12.1 (A:) Phosphat 8.9 4.2E+02 0.03 20.7 11.2 59 290-353 85-143 (215)
7 d2nwwa1 f.49.1.1 (A:12-416) Pr 7.2 6.8E+02 0.049 21.8 9.5 29 185-213 72-100 (405)
8 d1ppjc2 f.21.1.2 (C:15-260) Mi 6.7 5.1E+02 0.037 21.3 7.0 66 35-104 83-150 (246)
9 d1b3qa1 a.30.2.1 (A:293-354) H 6.4 1.5E+02 0.011 19.2 2.5 16 405-420 8-23 (62)
10 d1g5za_ a.24.12.1 (A:) Outer s 5.6 2.6E+02 0.019 21.8 3.9 22 401-422 16-37 (164)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=18.68 E-value=54 Score=28.17 Aligned_cols=8 Identities=38% Similarity=0.210 Sum_probs=3.0
Q ss_pred hhHHHHHH
Q 036990 160 YDYGLMIF 167 (457)
Q Consensus 160 y~~~~~v~ 167 (457)
|-+..+++
T Consensus 55 yi~PG~~~ 62 (248)
T d2r6gf1 55 YVYPGMAG 62 (248)
T ss_dssp HHHHHHHH
T ss_pred hhhhHHHH
Confidence 33333333
No 2
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=16.44 E-value=2.5e+02 Score=22.46 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 036990 399 SLLVDVVACTKKIAESVQELASFAKFK 425 (457)
Q Consensus 399 s~l~e~~~~le~l~~~v~~L~~~~~F~ 425 (457)
..++.++..+|++.+-....+...-|-
T Consensus 180 ~~~~~i~~~lERIgDh~~nIaE~v~y~ 206 (225)
T d1sumb_ 180 LLLLEIAGNIEIIADYATNIVEVSVYM 206 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777776666666554443
No 3
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]}
Probab=13.13 E-value=2.9e+02 Score=21.61 Aligned_cols=58 Identities=14% Similarity=0.010 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 036990 291 KYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDACINMSSEAVKALKELAFSIKT 353 (457)
Q Consensus 291 ~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~al~~ 353 (457)
.+.++...+.++.++...+............+... .++..+...+...+...-.++.+
T Consensus 79 ~~~~i~~~lERIgD~a~~Ia~~~~~~~~~~~~~~~-----~~l~~m~~~~~~~~~~ai~a~~~ 136 (212)
T d1xwma_ 79 AAIKIASDIERIADFAVNIAKACIRIGGQPFVMDI-----GPLVLMYRLATDMVSTAIAAYDR 136 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCC-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccc-----cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777766665543211111122111 23555666666666666666665
No 4
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.47 E-value=2.9e+02 Score=21.16 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 036990 298 QTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDACINMS 337 (457)
Q Consensus 298 ~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~~~~l~ 337 (457)
.+..+-..|..++.-. +.++...+++|..|++-|..++
T Consensus 16 QL~vF~~~L~~FA~kH--~~eI~~np~FR~~F~~MC~~iG 53 (145)
T d1u5ta1 16 QLMVFQERLVEFAKKH--NSELQASPEFRSKFMHMCSSIG 53 (145)
T ss_dssp HHHHHHHHHHHHHHHC--TTTTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh--HHHhhcCHHHHHHHHHHHHHhC
Confidence 3333444444444333 6678888899999988877664
No 5
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=10.05 E-value=2.6e+02 Score=19.19 Aligned_cols=24 Identities=13% Similarity=0.335 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 036990 399 SLLVDVVACTKKIAESVQELASFA 422 (457)
Q Consensus 399 s~l~e~~~~le~l~~~v~~L~~~~ 422 (457)
..++.++..+|++.+....++...
T Consensus 71 ~~~~~i~~~lERIgDha~nIae~v 94 (99)
T d1vcta1 71 ITILQIANAIEDISNAAGDLAKMV 94 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888877776553
No 6
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=8.88 E-value=4.2e+02 Score=20.66 Aligned_cols=59 Identities=19% Similarity=0.050 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 036990 290 KKYLKIGSQTRDCAYRIESLNGYLILNTETQIPEEIRGKMQDACINMSSEAVKALKELAFSIKT 353 (457)
Q Consensus 290 ~~y~~i~~~~~~~~~~l~aL~~~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~al~~ 353 (457)
..+.++..-+.++.++...+.......... .++... ..+..+...+.+.+.....++.+
T Consensus 85 ~~~~~i~~~lERIgD~a~~ia~~~~~~~~~-~~~~~~----~~l~~m~~~v~~m~~~a~~a~~~ 143 (215)
T d1t72a_ 85 MGIYKIVSDLERMGDEAENIAERAILLAEE-PPLKPY----VNINFMSEIVKEMVNDSVISFIQ 143 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCSSCC----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCcchh----HHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566666777777776665443211111 111100 12444555555666666666664
No 7
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.22 E-value=6.8e+02 Score=21.78 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 036990 185 MRIAYERVITILIGIFTALFVCIFICPVW 213 (457)
Q Consensus 185 ~~~a~~R~~~i~iG~~ia~lv~~~i~P~~ 213 (457)
.....+=+..+++++++++++..++.|..
T Consensus 72 ~~ti~~~l~tt~iA~~igl~~~~~~~pg~ 100 (405)
T d2nwwa1 72 VKIVVYYLLTSAFAVTLGIIMARLFNPGA 100 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34566667788999999999999998855
No 8
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.67 E-value=5.1e+02 Score=21.35 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=37.9
Q ss_pred HHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHHHhhhhccccccCcchHHhhhhhhh--cccChhHHHHHHH
Q 036990 35 EFAKKTKRLGREDPRRIIHSFKVGLAIALVSLFYYFEPLYKGFGISAMWAVLTVVVV--FEFSVGGTLSRGL 104 (457)
Q Consensus 35 ~~~~~~~~~~~~d~~~~~~alK~aiA~~la~~l~~~~~~~~~~~~~~~Wa~itv~vv--~~p~~G~t~~~~~ 104 (457)
++.|.+.--....++.|..++=..+.+...+..+|..| +++.++|+...+.=. .-|-+|..+...+
T Consensus 83 Hm~r~~~~~sy~~~~~w~~G~~l~~l~m~~af~GY~Lp----w~qms~wa~~V~t~l~~~iP~iG~~l~~wi 150 (246)
T d1ppjc2 83 HVGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLP----WGQMSFWGATVITNLLSAIPYIGTNLVEWI 150 (246)
T ss_dssp HHHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHHHTT----CBHHHHHHHHHHHGGGGGSTTTHHHHHHHH
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHeeccCC----CcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55565555444466667666644444444444565554 466889987644333 3467777765443
No 9
>d1b3qa1 a.30.2.1 (A:293-354) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=6.41 E-value=1.5e+02 Score=19.18 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 036990 405 VACTKKIAESVQELAS 420 (457)
Q Consensus 405 ~~~le~l~~~v~~L~~ 420 (457)
+++|++|++.|.||+-
T Consensus 8 ~~kLD~LmnlvGELvi 23 (62)
T d1b3qa1 8 IEKLDNLMDLMGELVI 23 (62)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677888888888863
No 10
>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease spirochete (Borrelia burgdorferi), different strains [TaxId: 139]}
Probab=5.58 E-value=2.6e+02 Score=21.81 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 036990 401 LVDVVACTKKIAESVQELASFA 422 (457)
Q Consensus 401 l~e~~~~le~l~~~v~~L~~~~ 422 (457)
...-+-++|.|+.+++||+..+
T Consensus 16 fv~aVKEVetLv~SIDELA~KA 37 (164)
T d1g5za_ 16 VVLAVKEVETLLASIDELATKA 37 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3456778899999999999654
Done!