BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036991
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And
Plastidial Type A Methionine Sulfoxide Reductases
Length = 261
Score = 248 bits (634), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 119/168 (70%), Positives = 136/168 (80%), Gaps = 2/168 (1%)
Query: 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQ 60
FAQFGAGCFWGVELAFQRV GV+KTEVGY+QG + +P Y V +GTTNH EVVRVQ+DP+
Sbjct: 96 FAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVXTGTTNHNEVVRVQYDPK 155
Query: 61 VCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ 120
C + L+ V W RHDPTTLNRQG DVGTQYRSGIYYY Q + A+ES+E +Q +
Sbjct: 156 ECSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKLLN-- 213
Query: 121 RKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 168
RKIVTEILPAK+FYRAEEYHQQYL KGG G QSAEKGC++PIRCYG
Sbjct: 214 RKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFMQSAEKGCNDPIRCYG 261
>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of
Methionine Sulfoxide Reductase A From Escherichia Coli,
A 23 Kda Protein
Length = 212
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQ 60
A F GCFWGVE F ++ GV T GY+ G P+P YR VCSG T H E VR+ +DP
Sbjct: 45 IAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPS 104
Query: 61 VCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESME---AKQLEM 117
V Y LL VFW HDP RQG D GTQYRS IY Q AR S+E A L
Sbjct: 105 VISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAA 164
Query: 118 KDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEP 163
D R I TEI A FY AE+ HQQYL K C P
Sbjct: 165 DDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVCLPP 210
>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of
E. Coli Methionine Sulfoxide Reductase A (Msra)
Length = 211
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQ 60
A F GCFWGVE F ++ GV T GY+ G P+P YR V SG T H E VR+ +DP
Sbjct: 44 IAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVSSGDTGHAEAVRIVYDPS 103
Query: 61 VCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESME---AKQLEM 117
V Y LL VFW HDP RQG D GTQYRS IY Q AR S+E A L
Sbjct: 104 VISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAA 163
Query: 118 KDQRKIVTEILPAKRFYRAEEYHQQYLEK 146
D R I TEI A FY AE+ HQQYL K
Sbjct: 164 DDDRHITTEIANATPFYYAEDDHQQYLHK 192
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|B Chain B, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|C Chain C, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
Length = 211
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 86/166 (51%), Gaps = 3/166 (1%)
Query: 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQ 60
A F G FWGVE F ++ GV T GY+ G P+P YR VCSG T H E VR+ +DP
Sbjct: 44 IAIFAMGXFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPS 103
Query: 61 VCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESME---AKQLEM 117
V Y LL VFW HDP RQG D GTQYRS IY Q AR S+E A L
Sbjct: 104 VISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAA 163
Query: 118 KDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEP 163
D R I TEI A FY AE+ HQQYL K C P
Sbjct: 164 DDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVCLPP 209
>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide
Reductase
Length = 199
Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 86/147 (58%), Gaps = 2/147 (1%)
Query: 2 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQV 61
A FG GCFWG E F + GV T+VG++ G P+P Y+ VCSG T H EVVRV F P+
Sbjct: 46 AVFGXGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEH 105
Query: 62 CPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ- 120
+ LL VFW HDPT RQG D G+QYRS IY + A +S E Q + +
Sbjct: 106 ISFEELLKVFWENHDPTQGXRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHG 165
Query: 121 -RKIVTEILPAKRFYRAEEYHQQYLEK 146
I T+I + FY AE+YHQQYL K
Sbjct: 166 FGLITTDIREGQTFYYAEDYHQQYLSK 192
>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
pdb|1FVA|B Chain B, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
Length = 217
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 86/148 (58%), Gaps = 2/148 (1%)
Query: 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQ 60
A FG GCFWG E F + GV T+VG++ G P+P Y+ VCSG T H EVVRV F P+
Sbjct: 53 MAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPE 112
Query: 61 VCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ 120
+ LL VFW HDPT RQG D G+QYRS IY + A +S E Q + +
Sbjct: 113 HISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEH 172
Query: 121 --RKIVTEILPAKRFYRAEEYHQQYLEK 146
I T+I + FY AE+YHQQYL K
Sbjct: 173 GFGLITTDIREGQTFYYAEDYHQQYLSK 200
>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra
Length = 212
Score = 129 bits (324), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Query: 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQ 60
A FG GCFWG E F + GV T+VG++ G+ +P Y+ VCS T H EVVRV + P+
Sbjct: 44 MAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYRPE 103
Query: 61 VCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQ--LEMK 118
+ LL VFW HDPT RQG D GTQYRS +Y + Q A S E Q L
Sbjct: 104 HISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSAVQMEAALRSKEEYQKVLSKH 163
Query: 119 DQRKIVTEILPAKRFYRAEEYHQQYLEK 146
+ I T+I + FY AE+YHQQYL K
Sbjct: 164 NFGPITTDIREGQVFYYAEDYHQQYLSK 191
>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine
Sulfoxide Reductase A In Complex With Protein-Bound
Methionine
Length = 203
Score = 122 bits (306), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 85/145 (58%), Gaps = 4/145 (2%)
Query: 2 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQV 61
A GCFWG++ + GV T VGYS GN+P+ YR GT H E V + FDP V
Sbjct: 28 AILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYR--NHGT--HAEAVEIIFDPTV 83
Query: 62 CPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQR 121
Y LL F+ HDPTT +RQG D GT YRS I+Y++E Q R+A +++ +
Sbjct: 84 TDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPG 143
Query: 122 KIVTEILPAKRFYRAEEYHQQYLEK 146
K+VTE+ PA F+ AE HQ YL++
Sbjct: 144 KVVTEVSPAGDFWEAEPEHQDYLQR 168
>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide
Reductase From Sinorhizobium Meliloti 1021
Length = 168
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 89/145 (61%), Gaps = 4/145 (2%)
Query: 2 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQV 61
A GCFWG + +++ GV +T VGY+ G+VP+ YR GT H E + + FDP+
Sbjct: 5 AVLAGGCFWGXQDLIRKLPGVIETRVGYTGGDVPNATYR--NHGT--HAEGIEIIFDPER 60
Query: 62 CPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQR 121
Y +L +F+ HDPTT +RQG D+GT YRS IYY ++ Q R+A+E++ +
Sbjct: 61 ISYRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPG 120
Query: 122 KIVTEILPAKRFYRAEEYHQQYLEK 146
K+VTE+ P + F+ AE HQ YLE+
Sbjct: 121 KVVTEVEPVRDFWEAEPEHQNYLER 145
>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Reduced Form)
Length = 194
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 4 FGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCP 63
GCFWG+E FQR+ GV GY+ GN +P+Y V T H E V+V +D
Sbjct: 8 LAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 64 YTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKI 123
++L F+ DPT+LN+QG D GTQYRSG+YY + + + +++ +Q K Q +
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQ--QKYQLPL 125
Query: 124 VTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPI 164
V E P K FY AEEYHQ YL K G + DEP+
Sbjct: 126 VVENEPLKNFYDAEEYHQDYLIKNPN-GYCHIDIRKADEPL 165
>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Oxidized Form)
Length = 193
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 4 FGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCP 63
GCFWG+E FQR+ GV GY+ GN +P+Y V T H E V+V +D
Sbjct: 7 LAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 66
Query: 64 YTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKI 123
++L F+ DPT+LN+QG D GTQYRSG+YY + + + +++ +Q K Q +
Sbjct: 67 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQ--QKYQLPL 124
Query: 124 VTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPI 164
V E P K FY AEEYHQ YL K G + DEP+
Sbjct: 125 VVENEPLKNFYDAEEYHQDYLIKNPN-GYCHIDIRKADEPL 164
>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria
Meningitidis Pilb (sulfenic Acid Form)
Length = 194
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 4 FGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCP 63
G FWG+E FQR+ GV GY+ GN +P+Y V T H E V+V +D
Sbjct: 8 LAGGXFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 64 YTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKI 123
++L F+ DPT+LN+QG D GTQYRSG+YY + + + +++ +Q K Q +
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQ--QKYQLPL 125
Query: 124 VTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPI 164
V E P K FY AEEYHQ YL K S K DEP+
Sbjct: 126 VVENEPLKNFYDAEEYHQDYLIKNPNGYSHIDIRK-ADEPL 165
>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Complex With A Substrate)
Length = 194
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 4 FGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCP 63
G FWG+E FQR+ GV GY+ GN +P+Y V T H E V+V +D
Sbjct: 8 LAGGSFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 64 YTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKI 123
++L F+ DPT+LN+QG D GTQYRSG+YY + + + +++ +Q K Q +
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQ--QKYQLPL 125
Query: 124 VTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPI 164
V E P K FY AEEYHQ YL K G + DEP+
Sbjct: 126 VVENEPLKNFYDAEEYHQDYLIKNPN-GYCHIDIRKADEPL 165
>pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|C Chain C, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
Length = 187
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 86/152 (56%), Gaps = 10/152 (6%)
Query: 4 FGAGCFWGVELAFQRVVG--VSKTEVGYSQG-----NVPDP-NYRLVCSGTTNHVEVVRV 55
GCFWG E +++ + + +VGY+ G + P +Y+ VC G T+ EV++V
Sbjct: 24 LACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQV 83
Query: 56 QFDPQVCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQL 115
++P+V L F+ HDPTT N QG D GTQYRSG++ +++ A L + ++
Sbjct: 84 SYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSD--ADLKELAKIKEEW 141
Query: 116 EMKDQRKIVTEILPAKRFYRAEEYHQQYLEKG 147
+ K KI T I P K FY AEEYHQ YL+K
Sbjct: 142 QPKWGNKIATVIEPIKNFYDAEEYHQLYLDKN 173
>pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
pdb|3PIL|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
Length = 184
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 86/152 (56%), Gaps = 10/152 (6%)
Query: 4 FGAGCFWGVELAFQRVVG--VSKTEVGYSQG-----NVPDP-NYRLVCSGTTNHVEVVRV 55
GCFWG E +++ + + +VGY+ G + P +Y+ VC G T+ EV++V
Sbjct: 21 LACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQV 80
Query: 56 QFDPQVCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQL 115
++P+V L F+ HDPTT N QG D GTQYRSG++ +++ A L + ++
Sbjct: 81 SYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSD--ADLKELAKIKEEW 138
Query: 116 EMKDQRKIVTEILPAKRFYRAEEYHQQYLEKG 147
+ K KI T I P K FY AEEYHQ YL+K
Sbjct: 139 QPKWGNKIATVIEPIKNFYDAEEYHQLYLDKN 170
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|B Chain B, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|C Chain C, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|D Chain D, Crystal Structure Of Fusion Protein Of Msra And Msrb
Length = 313
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 4/143 (2%)
Query: 4 FGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCP 63
GCFWG+E F R+ GV +T VGY+ G V NY+L+ T+H E V+V +D +
Sbjct: 7 LAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLL--KETDHAETVQVIYDEKEVS 64
Query: 64 YTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKI 123
+L ++ DP ++N+QG D G QYR+GIYY +E A L ++ E RKI
Sbjct: 65 LREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDE--ADLPAIYTVVQEQERMLGRKI 122
Query: 124 VTEILPAKRFYRAEEYHQQYLEK 146
E+ + + AE+YHQ YL K
Sbjct: 123 AVEVEQLRHYILAEDYHQDYLRK 145
>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 183
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 10/152 (6%)
Query: 4 FGAGCFWGVELAFQRVVG--VSKTEVGYSQG-----NVPDP-NYRLVCSGTTNHVEVVRV 55
+G FWG E +++ + + ++VGY+ G + P +Y+ V G T+ EV++V
Sbjct: 20 LASGSFWGTEHMYRKYLNDRIVDSKVGYANGEESKKDSPSSVSYKRVSGGDTDFAEVLQV 79
Query: 56 QFDPQVCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQL 115
++P+V L F+ HDPTT N QG D GTQYRSG++ +++ A L + ++
Sbjct: 80 SYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSD--ADLKELAKIKEEW 137
Query: 116 EMKDQRKIVTEILPAKRFYRAEEYHQQYLEKG 147
+ K KI T I P K FY AEEYHQ YL+K
Sbjct: 138 QPKWGNKIATVIEPIKNFYDAEEYHQLYLDKN 169
>pdb|2KE9|A Chain A, Nmr Solution Structure Of The Caskin Sh3 Domain
Length = 83
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 68 LSVFWGRHDPTTLNRQGGDVGT 89
L FW HDPT LN + GDV T
Sbjct: 24 LKDFWNLHDPTALNVRAGDVIT 45
>pdb|3Q1N|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Lsei_2598) From Lactobacillus Casei Atcc 334 At 1.61 A
Resolution
Length = 294
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 70 VFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARE 108
FW RH P G QYR G Y +Q AR+
Sbjct: 40 TFWNRHAPILFPSIGKSNQDQYRLGAKTYPXSQHGFARD 78
>pdb|3D45|A Chain A, Crystal Structure Of Mouse Parn In Complex With M7gpppg
pdb|3D45|B Chain B, Crystal Structure Of Mouse Parn In Complex With M7gpppg
Length = 507
Score = 28.1 bits (61), Expect = 2.5, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 80 LNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEM--------------KDQRKIVT 125
L QG D + SGI Y N+ + R RE + K+ + +DQ+K +
Sbjct: 118 LASQGFDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFID 177
Query: 126 EILPA-KRFYRAEE 138
+++ + F ++EE
Sbjct: 178 QVIEKIEDFLQSEE 191
>pdb|2A1R|A Chain A, Crystal Structure Of Parn Nuclease Domain
pdb|2A1R|B Chain B, Crystal Structure Of Parn Nuclease Domain
pdb|2A1S|A Chain A, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|B Chain B, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|C Chain C, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|D Chain D, Crystal Structure Of Native Parn Nuclease Domain
Length = 430
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 80 LNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQ 114
L QG D +R+GI Y N+ + R RE + K+
Sbjct: 116 LASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKR 150
>pdb|3AHR|A Chain A, Inactive Human Ero1
Length = 465
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 62 CPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ 120
CP+ N +S GR D Q +V +S Y Y+E L E +A++L D+
Sbjct: 82 CPFWNDISQC-GRRDAAVKPAQSDEVPDGIKSASYKYSEEANNLIEECEQAERLGAVDE 139
>pdb|3AHQ|A Chain A, Hyperactive Human Ero1
Length = 465
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 62 CPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQ 120
CP+ N +S GR D Q +V +S Y Y+E L E+ +A++L D+
Sbjct: 82 CPFWNDISQC-GRRDCAVKPAQSDEVPDGIKSASYKYSEEANNLIEEAEQAERLGAVDE 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,386,643
Number of Sequences: 62578
Number of extensions: 211866
Number of successful extensions: 346
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 27
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)