Query 036991
Match_columns 168
No_of_seqs 132 out of 1110
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0225 MsrA Peptide methionin 100.0 3.1E-77 6.8E-82 478.1 16.8 153 1-153 8-160 (174)
2 KOG1635 Peptide methionine sul 100.0 2.5E-76 5.5E-81 472.0 15.2 166 1-168 26-191 (191)
3 TIGR00401 msrA methionine-S-su 100.0 3.7E-73 8.1E-78 447.0 17.0 148 1-148 2-149 (149)
4 PRK14054 methionine sulfoxide 100.0 2.6E-73 5.7E-78 456.9 16.2 161 1-161 5-165 (172)
5 PRK13014 methionine sulfoxide 100.0 1.3E-72 2.7E-77 457.7 16.0 150 1-150 10-159 (186)
6 PRK00058 methionine sulfoxide 100.0 5.6E-71 1.2E-75 455.6 18.2 162 1-168 47-210 (213)
7 PF01625 PMSR: Peptide methion 100.0 1.5E-71 3.3E-76 440.2 10.5 150 1-152 2-152 (155)
8 PRK05528 methionine sulfoxide 100.0 7.2E-68 1.6E-72 419.7 17.2 145 1-154 3-147 (156)
9 PRK05550 bifunctional methioni 100.0 2.7E-66 5.9E-71 443.1 16.7 147 1-150 129-275 (283)
10 PRK14018 trifunctional thiored 100.0 5.3E-64 1.2E-68 458.2 17.4 152 1-155 200-351 (521)
11 PF00403 HMA: Heavy-metal-asso 95.6 0.022 4.7E-07 37.3 4.1 47 6-71 10-56 (62)
12 COG2608 CopZ Copper chaperone 89.3 0.82 1.8E-05 31.3 4.4 46 6-70 14-59 (71)
13 PF02682 AHS1: Allophanate hyd 81.3 2.8 6.1E-05 34.5 4.6 67 10-100 28-97 (202)
14 PF08098 ATX_III: Anemonia sul 76.8 0.93 2E-05 25.9 0.3 8 5-12 12-19 (27)
15 COG2049 DUR1 Allophanate hydro 72.8 6 0.00013 33.5 4.3 30 20-70 38-67 (223)
16 TIGR02712 urea_carbox urea car 70.5 16 0.00035 37.7 7.5 70 18-111 841-913 (1201)
17 TIGR00003 copper ion binding p 61.7 28 0.00061 19.8 5.0 47 6-71 14-60 (68)
18 smart00796 AHS1 Allophanate hy 61.0 15 0.00033 30.1 4.4 60 18-100 38-98 (201)
19 COG2217 ZntA Cation transport 50.3 21 0.00046 34.9 4.1 46 6-71 14-60 (713)
20 KOG4309 Transcription mediator 46.7 54 0.0012 27.3 5.3 50 50-103 139-194 (217)
21 COG5053 CDC33 Translation init 46.3 42 0.00092 28.2 4.7 54 64-117 132-188 (217)
22 PF11491 DUF3213: Protein of u 46.0 14 0.0003 27.0 1.6 29 48-77 33-61 (88)
23 PRK12386 fumarate reductase ir 43.0 1.3E+02 0.0028 25.7 7.3 79 48-134 17-95 (251)
24 COG0718 Uncharacterized protei 41.9 26 0.00056 26.4 2.6 17 47-63 47-63 (105)
25 PF04536 TPM: TLP18.3, Psb32 a 40.7 82 0.0018 22.3 5.1 49 98-148 2-50 (119)
26 TIGR00370 conserved hypothetic 37.6 51 0.0011 27.1 4.0 35 14-70 27-61 (202)
27 PRK14626 hypothetical protein; 37.6 22 0.00047 26.7 1.6 17 47-63 47-63 (110)
28 PRK14627 hypothetical protein; 37.5 30 0.00065 25.5 2.3 17 47-63 43-59 (100)
29 PRK14624 hypothetical protein; 36.1 37 0.0008 25.8 2.7 24 47-70 48-77 (115)
30 PF02083 Urotensin_II: Urotens 31.6 15 0.00033 17.4 -0.0 6 6-11 4-9 (12)
31 COG3727 Vsr DNA G:T-mismatch r 29.5 23 0.0005 28.1 0.6 11 2-12 60-70 (150)
32 COG0136 Asd Aspartate-semialde 27.5 78 0.0017 28.4 3.7 27 47-74 242-268 (334)
33 PF09299 Mu-transpos_C: Mu tra 26.4 34 0.00073 22.4 0.9 13 51-63 36-48 (62)
34 PRK00587 hypothetical protein; 26.4 44 0.00096 24.7 1.6 17 47-63 42-58 (99)
35 PRK03762 hypothetical protein; 26.3 45 0.00099 24.8 1.7 24 47-70 47-71 (103)
36 cd02145 BluB Subfamily of the 26.0 2.2E+02 0.0047 22.3 5.7 47 56-109 12-59 (196)
37 PRK01844 hypothetical protein; 25.6 33 0.00071 24.2 0.8 20 131-150 20-39 (72)
38 PRK06901 aspartate-semialdehyd 25.3 97 0.0021 27.6 3.8 26 47-73 227-252 (322)
39 PRK11920 rirA iron-responsive 24.5 63 0.0014 25.2 2.3 42 12-73 41-84 (153)
40 PF05772 NinB: NinB protein; 23.9 1.1E+02 0.0024 23.5 3.5 34 96-131 1-34 (127)
41 cd02144 iodotyrosine_dehalogen 22.7 2.3E+02 0.0051 21.6 5.2 43 56-105 13-56 (193)
42 PF02617 ClpS: ATP-dependent C 22.6 1.6E+02 0.0034 20.3 3.8 71 55-127 10-82 (82)
43 COG3458 Acetyl esterase (deace 22.5 1.2E+02 0.0025 27.1 3.7 61 10-78 161-238 (321)
44 PRK14629 hypothetical protein; 22.1 61 0.0013 24.0 1.7 17 47-63 45-61 (99)
45 PRK06728 aspartate-semialdehyd 21.6 1.2E+02 0.0026 27.1 3.8 25 47-72 250-274 (347)
46 PRK00523 hypothetical protein; 21.5 44 0.00094 23.6 0.7 20 131-150 21-40 (72)
47 KOG2003 TPR repeat-containing 21.0 35 0.00076 32.6 0.2 16 3-18 397-412 (840)
48 COG1703 ArgK Putative periplas 20.9 49 0.0011 29.6 1.1 89 62-150 159-262 (323)
49 PF04990 RNA_pol_Rpb1_7: RNA p 20.8 49 0.0011 25.7 1.0 27 50-76 7-38 (135)
50 TIGR00632 vsr DNA mismatch end 20.1 49 0.0011 25.3 0.8 11 1-11 58-68 (117)
No 1
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-77 Score=478.06 Aligned_cols=153 Identities=54% Similarity=0.878 Sum_probs=147.3
Q ss_pred CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL 80 (168)
Q Consensus 1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~ 80 (168)
.|+||||||||+|+.|+++|||++|+|||+||+++||||++||+|.|||+|+|+|+|||++|||++||++||++||||++
T Consensus 8 ~a~fagGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~ihDPT~~ 87 (174)
T COG0225 8 KAYFAGGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEIHDPTSL 87 (174)
T ss_pred EEEEeccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHheecCCCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCcccChhHHHHHHHhCCCCCCc
Q 036991 81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSK 153 (168)
Q Consensus 81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~~~~ 153 (168)
||||||+|+||||+||++|++|+++|++++++++++-..+++|+|||+|+++||+||||||+||+|||+.+|-
T Consensus 88 nrQGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI~p~~~Fy~AEeYHQ~Yl~KNP~gY~~ 160 (174)
T COG0225 88 NRQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEIEPAKNFYPAEEYHQDYLKKNPNGYCH 160 (174)
T ss_pred CccCCcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEeeccccCcccHHHHHHHHHhCCCCcee
Confidence 9999999999999999999999999999999998843336799999999999999999999999999988775
No 2
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-76 Score=472.04 Aligned_cols=166 Identities=68% Similarity=1.150 Sum_probs=163.6
Q ss_pred CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL 80 (168)
Q Consensus 1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~ 80 (168)
.|+||+|||||+|+.|++||||++|+|||+||.+.||||++||+|+|||+|+|+|+|||+.|||++||++||++||||++
T Consensus 26 ~a~fg~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw~~HdPtt~ 105 (191)
T KOG1635|consen 26 FATFGAGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFWSRHDPTTL 105 (191)
T ss_pred eeeeeccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHHHcCCchhh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCcccChhHHHHHHHhCCCCCCccccccCC
Q 036991 81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGC 160 (168)
Q Consensus 81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~~~~~~~~~~~ 160 (168)
||||+|+|+||||+||+.+++|+++|++++++.|+++ .++|+|+|+|+.+||.||+|||+||.|||..|..++..+++
T Consensus 106 n~QG~D~GtQYRS~I~~~s~eq~k~A~~s~e~~Q~k~--~~kI~T~I~p~~kFY~AE~yHQqYl~K~~~~Gy~~s~~~~~ 183 (191)
T KOG1635|consen 106 NRQGNDVGTQYRSGIYTYSPEQEKLARESKEREQKKW--NGKIVTEILPAKKFYRAEEYHQQYLSKNPRNGYAQSTHKGR 183 (191)
T ss_pred hccCCcccceeeeeeeeCCHHHHHHHHHHHHHHHhcc--CCcceEEEeeccchhhchHHHHHHHhhCCCCccccccCCcc
Confidence 9999999999999999999999999999999999987 89999999999999999999999999999999999999999
Q ss_pred CCCceeeC
Q 036991 161 DEPIRCYG 168 (168)
Q Consensus 161 ~~~~~~~~ 168 (168)
+|+|||||
T Consensus 184 ~~pi~c~g 191 (191)
T KOG1635|consen 184 KDPIRCYG 191 (191)
T ss_pred cCcccccC
Confidence 99999998
No 3
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=100.00 E-value=3.7e-73 Score=447.01 Aligned_cols=148 Identities=55% Similarity=0.934 Sum_probs=143.0
Q ss_pred CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL 80 (168)
Q Consensus 1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~ 80 (168)
+|+||||||||+|+.|++++||++|+|||+||+++||||++||+|+|||+|+|+|+|||++|||++||++||++||||+.
T Consensus 2 ~~~~agGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~~hdPt~~ 81 (149)
T TIGR00401 2 IATFAGGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWEIHDPTQG 81 (149)
T ss_pred EEEEecCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHHhCCCCcC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCcccChhHHHHHHHhCC
Q 036991 81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGG 148 (168)
Q Consensus 81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~ 148 (168)
||||+|+|+||||+||++|++|+++|++++++++++...+++|+|+|+|+++||+||+|||+||+|||
T Consensus 82 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~tei~~~~~Fy~AE~yHQ~Yl~k~p 149 (149)
T TIGR00401 82 NRQGNDIGTQYRSGIYYHSDEQEKAARASKERLQAAANYGDPIVTEIEPAENFYYAEEYHQQYLKKNP 149 (149)
T ss_pred CCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHHhcccCCCeEEEEecCCCeeecHHHHHHHHhhCc
Confidence 99999999999999999999999999999999998422268999999999999999999999999998
No 4
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=2.6e-73 Score=456.95 Aligned_cols=161 Identities=48% Similarity=0.782 Sum_probs=150.8
Q ss_pred CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL 80 (168)
Q Consensus 1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~ 80 (168)
+|+||||||||+|+.|+++|||++|+|||+||+++||||++||+|.|||+|+|+|+|||++|||++||++||++||||+.
T Consensus 5 ~a~fagGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~hDPt~~ 84 (172)
T PRK14054 5 TAVLAGGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQIHDPTTL 84 (172)
T ss_pred EEEEEcCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHhCCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCcccChhHHHHHHHhCCCCCCccccccCC
Q 036991 81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGC 160 (168)
Q Consensus 81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~~~~~~~~~~~ 160 (168)
||||+|+|+||||+||++|++|+++|++++++++++....++|+|+|+|+++||+||+|||+||+|||+.++........
T Consensus 85 ~~Qg~D~G~qYRS~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~Tei~~~~~Fy~AEeyHQ~Yl~k~p~~~~~~~~~~~~ 164 (172)
T PRK14054 85 NRQGNDRGTQYRSAIFYHDEEQKEIAEASIAELQASGLFDKPIVTEVEPAETFYEAEEYHQDYLEKNPNGYCCIFVIPPK 164 (172)
T ss_pred CCCCCCCCcCceeEEEeCCHHHHHHHHHHHHHHHHhcccCCCcEEEEecCCCceECHHHHHHHHHhCCCCcceeeccCHH
Confidence 99999999999999999999999999999999987621168999999999999999999999999999987765544443
Q ss_pred C
Q 036991 161 D 161 (168)
Q Consensus 161 ~ 161 (168)
.
T Consensus 165 ~ 165 (172)
T PRK14054 165 V 165 (172)
T ss_pred H
Confidence 3
No 5
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=1.3e-72 Score=457.66 Aligned_cols=150 Identities=48% Similarity=0.840 Sum_probs=144.4
Q ss_pred CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL 80 (168)
Q Consensus 1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~ 80 (168)
+|+||||||||+|+.|++++||++|+|||+||.++||||++||+|+|||+|+|+|+|||++|||++||++||++||||+.
T Consensus 10 ~a~~agGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~~hDPt~~ 89 (186)
T PRK13014 10 TATFAGGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFSTHDPTQL 89 (186)
T ss_pred EEEEecCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHHhcCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCcccChhHHHHHHHhCCCC
Q 036991 81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGR 150 (168)
Q Consensus 81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~ 150 (168)
||||+|+|+||||+||++|++|+++|++++++++++....++|+|+|+|+.+||+||+|||+||+|||+.
T Consensus 90 ~~Qg~D~G~QYRS~If~~~~eQ~~~a~~~~~~~~~~~~~~~~i~Tei~p~~~Fy~AEeyHQ~Yl~k~p~~ 159 (186)
T PRK13014 90 NRQGPDRGEQYRSAIFYHDEEQKKVAEAYIAQLDEAGIFKKPIVTPIKPYKNFYPAEDYHQDYLKKNPTH 159 (186)
T ss_pred CCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhccccCCCcEEEEecCCCeeeCHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999998642126899999999999999999999999999985
No 6
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=5.6e-71 Score=455.64 Aligned_cols=162 Identities=51% Similarity=0.799 Sum_probs=150.7
Q ss_pred CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL 80 (168)
Q Consensus 1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~ 80 (168)
.|+||||||||+|+.|++++||++|+|||+||.++||||++||+|.|||+|||+|+|||++|||++||++||++||||+.
T Consensus 47 ~a~fagGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~~hDPt~~ 126 (213)
T PRK00058 47 QAIFGMGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWENHDPTQG 126 (213)
T ss_pred EEEEEccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHHhcCCccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccC--CCceEEEEecCCCcccChhHHHHHHHhCCCCCCcccccc
Q 036991 81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKD--QRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEK 158 (168)
Q Consensus 81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~--~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~~~~~~~~~ 158 (168)
||||+|+|+||||+|||+|++|+++|+++++++++++.. .++|+|+|+|+.+||+||+|||+||+|||+.+|.
T Consensus 127 n~QG~D~G~QYRS~Ify~~~eQ~~~a~~~~~~~~~~~~~~~~~~i~TeI~~~~~Fy~AEeyHQ~Yl~k~p~~yc~----- 201 (213)
T PRK00058 127 MRQGNDVGTQYRSAIYTLTPEQLAAAEASREAYQQALAAAGDGPITTEIAPAPPFYYAEDYHQQYLAKNPNGYCG----- 201 (213)
T ss_pred CCCCCCCCcCceEEEEeCCHHHHHHHHHHHHHHHHHhhhccCCCeEEEEecCCCcccCHHHHHHHHHhCCCCccc-----
Confidence 999999999999999999999999999999999876521 2589999999999999999999999999975432
Q ss_pred CCCCCceeeC
Q 036991 159 GCDEPIRCYG 168 (168)
Q Consensus 159 ~~~~~~~~~~ 168 (168)
..+.|+|+.
T Consensus 202 -~~~~~~~~~ 210 (213)
T PRK00058 202 -LGGTGVCCP 210 (213)
T ss_pred -cCCCeeeCC
Confidence 346788763
No 7
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=100.00 E-value=1.5e-71 Score=440.23 Aligned_cols=150 Identities=55% Similarity=0.929 Sum_probs=139.7
Q ss_pred CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL 80 (168)
Q Consensus 1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~ 80 (168)
.|+||||||||+|+.|++++||++|+|||+||+.+||||++||+|+|||+|||+|+|||++|||++||++||++||||+.
T Consensus 2 ~a~fa~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~~dPt~~ 81 (155)
T PF01625_consen 2 KAYFAGGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRIHDPTQV 81 (155)
T ss_dssp EEEEEESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHHS-TTST
T ss_pred EEEEecCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHhcCCccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhh-ccCCCceEEEEecCCCcccChhHHHHHHHhCCCCCC
Q 036991 81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLE-MKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGS 152 (168)
Q Consensus 81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~-~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~~~ 152 (168)
||||+|+|+||||+||++|++|+++|++++++++++ + +++|+|+|+|+++||+||+|||+||+|||...|
T Consensus 82 ~~Qg~d~G~qYrs~If~~~~~q~~~a~~~~~~~~~~~~--~~~i~tei~p~~~Fy~AE~yHQ~Yl~k~p~~yc 152 (155)
T PF01625_consen 82 NGQGNDRGTQYRSAIFYHDEEQKKIAEASIAELQAKRF--GRPIVTEIEPLKNFYPAEEYHQKYLEKNPNGYC 152 (155)
T ss_dssp SEETTEESGGG-EEEEESSHHHHHHHHHHHHHHHHHTT--SSSBS-EEEECEEEEEHHGGGTTHHHHSTTSTT
T ss_pred ccccCcccccceeEEecCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEecCCcEEECHHHHHHHHHhCCcccE
Confidence 999999999999999999999999999999999998 6 799999999999999999999999999998755
No 8
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=7.2e-68 Score=419.70 Aligned_cols=145 Identities=32% Similarity=0.558 Sum_probs=138.6
Q ss_pred CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL 80 (168)
Q Consensus 1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~ 80 (168)
+|+||||||||+|+.|+++|||++|+|||+||.++||+ +|.|||+|+|+|+|||++|||++||++||++||||+.
T Consensus 3 ~a~fagGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~-----~~~tgH~E~V~V~yDp~~isy~~LL~~f~~~hdPt~~ 77 (156)
T PRK05528 3 TVYFAGGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLD-----GPYDGYAECVKTHFDPRMVSITDLMGYLFEIIDPYSV 77 (156)
T ss_pred EEEEecCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCC-----CCCCCcEEEEEEEECCCcCCHHHHHHHHHHhCCcccc
Confidence 48999999999999999999999999999999999986 7889999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCcccChhHHHHHHHhCCCCCCcc
Q 036991 81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQ 154 (168)
Q Consensus 81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~~~~~ 154 (168)
||||+|+|+||||+||++|++|+++|+++++++++ .++|+|+|+|+.+||+||+|||+||+|||..+|..
T Consensus 78 ~~Qg~D~G~QYRS~If~~d~eQ~~~a~~~~~~~~~----~~~i~Tei~~~~~Fy~AE~yHQ~Yl~k~p~~yc~~ 147 (156)
T PRK05528 78 NKQGNDVGEKYRTGIYSEVDDHLIEARQFIERRED----ADKIAVEVLPLTNYVKSAEEHQDRLEKFPEDYCHI 147 (156)
T ss_pred cccCCCCCCCceEEEEeCCHHHHHHHHHHHHHHhc----CCCeEEEEecCCCeeecHHHHHHHHHhCCCCCccc
Confidence 99999999999999999999999999999988864 46899999999999999999999999999877764
No 9
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=100.00 E-value=2.7e-66 Score=443.10 Aligned_cols=147 Identities=49% Similarity=0.871 Sum_probs=143.0
Q ss_pred CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL 80 (168)
Q Consensus 1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~ 80 (168)
+|+||||||||+|+.|++++||++|+||||||+++||||++||+|.|||+|||+|+|||++|||++||++||++||||+.
T Consensus 129 ~~~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~~~hDPt~~ 208 (283)
T PRK05550 129 EAIFAGGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFFEIHDPTQL 208 (283)
T ss_pred EEEEecCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHhhcCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCcccChhHHHHHHHhCCCC
Q 036991 81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGR 150 (168)
Q Consensus 81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~ 150 (168)
|+||+|+|+||||+||++|++|+++|+++++++++.. ++|+|+|+|+++||+||+|||+||+|||+.
T Consensus 209 ~~Qg~D~G~QYRS~If~~d~eq~~~A~~~~~~~~~~~---~~i~TeI~~l~~Fy~AEeyHQ~Yl~k~p~~ 275 (283)
T PRK05550 209 NRQGPDIGTQYRSAIFYHDDEQKQIAEKLIAELTKKG---YPVVTEVEAAGPFYPAEDYHQDYYEKHGKQ 275 (283)
T ss_pred CCCCCCCCcCceEEEEeCCHHHHHHHHHHHHHHHhcC---CceEEEEeeCCCeeECHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999998754 489999999999999999999999999975
No 10
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=100.00 E-value=5.3e-64 Score=458.19 Aligned_cols=152 Identities=38% Similarity=0.685 Sum_probs=147.2
Q ss_pred CEEEecCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCC
Q 036991 1 FAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTL 80 (168)
Q Consensus 1 ~a~fa~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~ 80 (168)
+|+||||||||+|+.|++++||++|+||||||+++||||++||+| |||+|+|+|+|||++|||++||++||++||||+.
T Consensus 200 ~~~~agGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g-tgH~E~V~V~yDp~~is~~~Ll~~f~~~~dPt~~ 278 (521)
T PRK14018 200 TIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRH-SGHAETVKVTYDADKLSLDTILQYYFRVVDPTSL 278 (521)
T ss_pred EEEEecCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCC-CCcEEEEEEEECCCcCcHHHHHHHHHHhCCCccc
Confidence 489999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCcccChhHHHHHHHhCCCCCCccc
Q 036991 81 NRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQS 155 (168)
Q Consensus 81 ~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~~~~~~~~ 155 (168)
||||+|+|+||||+|||+|++|+++|+++++++++.+ .++|+|||+|+.+||+||+|||+||+|||+.+|.-.
T Consensus 279 ~~Qg~d~G~qYrs~I~~~~~eq~~~a~~~~~~~~~~~--~~~i~tei~~~~~Fy~AE~yHQ~Yl~k~p~~yc~~~ 351 (521)
T PRK14018 279 NKQGNDTGTQYRSGVYYTDPADKAVIAAALKREQQKY--QLPLVVENEPLKNFYDAEEYHQDYLIKNPNGYCHID 351 (521)
T ss_pred cccCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHHHc--CCCeEEEEecCCCeeecHHHHHHHHHhCCCceeEee
Confidence 9999999999999999999999999999999999887 789999999999999999999999999998766643
No 11
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=95.63 E-value=0.022 Score=37.28 Aligned_cols=47 Identities=26% Similarity=0.483 Sum_probs=40.2
Q ss_pred cCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHH
Q 036991 6 AGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVF 71 (168)
Q Consensus 6 ~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f 71 (168)
.+|-+-++..+.++|||.+..+=+..+. |.|.||++.++.++|.+..
T Consensus 10 ~~C~~~v~~~l~~~~GV~~v~vd~~~~~-------------------v~v~~~~~~~~~~~i~~~i 56 (62)
T PF00403_consen 10 EGCAKKVEKALSKLPGVKSVKVDLETKT-------------------VTVTYDPDKTSIEKIIEAI 56 (62)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEETTTTE-------------------EEEEESTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCCCE-------------------EEEEEecCCCCHHHHHHHH
Confidence 4688889999999999999999776553 7899999999999998764
No 12
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=89.30 E-value=0.82 Score=31.31 Aligned_cols=46 Identities=26% Similarity=0.455 Sum_probs=41.1
Q ss_pred cCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHH
Q 036991 6 AGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSV 70 (168)
Q Consensus 6 ~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~ 70 (168)
++|.=-++..+..++||.++.+-...|. +.|+||+..++.++|.+.
T Consensus 14 ~~C~~~V~~al~~v~gv~~v~v~l~~~~-------------------~~V~~d~~~~~~~~i~~a 59 (71)
T COG2608 14 GHCVKTVEKALEEVDGVASVDVDLEKGT-------------------ATVTFDSNKVDIEAIIEA 59 (71)
T ss_pred HHHHHHHHHHHhcCCCeeEEEEEcccCe-------------------EEEEEcCCcCCHHHHHHH
Confidence 5778888899999999999999888774 779999999999999988
No 13
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=81.27 E-value=2.8 Score=34.46 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=42.1
Q ss_pred chhhhhhcc--CCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcCCC-CCCCCCCCC
Q 036991 10 WGVELAFQR--VVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDP-TTLNRQGGD 86 (168)
Q Consensus 10 Wg~E~~f~~--~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~hdP-t~~~~Qg~d 86 (168)
|.+.+.+.+ ++||++++.+|. .|-|.|||..+++.+|++..-....- .... ..
T Consensus 28 ~al~~~l~~~~~~gi~e~vp~~~---------------------sllV~fdp~~~~~~~l~~~l~~~~~~~~~~~---~~ 83 (202)
T PF02682_consen 28 LALARALRAAPLPGIVEVVPAYR---------------------SLLVHFDPLRIDRAALRAALEELLASPQPSE---KP 83 (202)
T ss_dssp HHHHHHHHHHT-TTEEEEEEESS---------------------EEEEEESTTTSHHHHHHHHHHHHHCCCCSSC---CC
T ss_pred HHHHHHHhcCCCCCeEEeecccc---------------------EEEEEEcCCcCCHHHHHHHHHHhhhhccccc---cC
Confidence 344455555 789999998875 36699999999998888776544322 1111 11
Q ss_pred CCCCceeeeccCCH
Q 036991 87 VGTQYRSGIYYYNE 100 (168)
Q Consensus 87 ~G~qYRs~If~~~~ 100 (168)
.+...+-=|.|.++
T Consensus 84 ~~r~~~iPV~Y~~~ 97 (202)
T PF02682_consen 84 PSRLIEIPVCYDGE 97 (202)
T ss_dssp CEEEEEEEEEESTT
T ss_pred CCceEEEEEEECCC
Confidence 22346666777743
No 14
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=76.76 E-value=0.93 Score=25.92 Aligned_cols=8 Identities=50% Similarity=1.373 Sum_probs=4.9
Q ss_pred ecCCcchh
Q 036991 5 GAGCFWGV 12 (168)
Q Consensus 5 a~GCFWg~ 12 (168)
-+|||||-
T Consensus 12 ~~gC~WGQ 19 (27)
T PF08098_consen 12 TGGCPWGQ 19 (27)
T ss_dssp TTT-SSS-
T ss_pred ecCCcccc
Confidence 47899984
No 15
>COG2049 DUR1 Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
Probab=72.80 E-value=6 Score=33.48 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=24.9
Q ss_pred CCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHH
Q 036991 20 VGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSV 70 (168)
Q Consensus 20 ~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~ 70 (168)
+||++++.||. .+.|.||+.+++..+|++.
T Consensus 38 ~gvve~vP~~~---------------------sllv~~d~~~~~~~~l~~~ 67 (223)
T COG2049 38 PGVVEIVPGYR---------------------SLLVIYDPPRLDPQELLER 67 (223)
T ss_pred CCeEEecccce---------------------eEEEEecccccCHHHHHHH
Confidence 59999998886 3779999999998777654
No 16
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=70.48 E-value=16 Score=37.65 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=44.4
Q ss_pred cCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhcC---CCCCCCCCCCCCCCCceee
Q 036991 18 RVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRH---DPTTLNRQGGDVGTQYRSG 94 (168)
Q Consensus 18 ~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~h---dPt~~~~Qg~d~G~qYRs~ 94 (168)
.++||+++..||. ++.|.|||.+++..+|++..-... ++.. .. ...++..+-=
T Consensus 841 ~~~gi~e~vP~~~---------------------Sl~v~~dp~~~~~~~l~~~l~~~~~~~~~~~-~~--~~~~r~v~iP 896 (1201)
T TIGR02712 841 KLPGIIDLTPGIR---------------------SLQIHYDPRVISQSELLEVLVAIEEQLPAAE-DL--QVPSRIVHLP 896 (1201)
T ss_pred CCCCeEEeccccE---------------------EEEEEECCCCCCHHHHHHHHHHHHhhccccc-cc--CCCCcEEEEE
Confidence 3579998887664 377999999999998877653322 2211 10 1123455566
Q ss_pred eccCCHHHHHHHHHHHH
Q 036991 95 IYYYNETQARLARESME 111 (168)
Q Consensus 95 If~~~~~q~~~a~~~~~ 111 (168)
+.|.++.-++.++++++
T Consensus 897 v~y~~~~~~~~~~ry~~ 913 (1201)
T TIGR02712 897 LSWEDPATLLAVERYME 913 (1201)
T ss_pred eEECCHHHHHHHHHHHh
Confidence 77888776666655554
No 17
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=61.73 E-value=28 Score=19.84 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=35.7
Q ss_pred cCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHH
Q 036991 6 AGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVF 71 (168)
Q Consensus 6 ~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f 71 (168)
..|-|.++..+...++|..+.+..+++ .+.|.||+...+...+....
T Consensus 14 ~~c~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~ 60 (68)
T TIGR00003 14 QHCVDKIEKFVGELEGVSKVQVKLEKA-------------------SVKVEFDAPQATEICIAEAI 60 (68)
T ss_pred HHHHHHHHHHHhcCCCEEEEEEEcCCC-------------------EEEEEeCCCCCCHHHHHHHH
Confidence 468888999999999998877776554 25678888877877776543
No 18
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=61.02 E-value=15 Score=30.14 Aligned_cols=60 Identities=25% Similarity=0.248 Sum_probs=36.5
Q ss_pred cCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHhc-CCCCCCCCCCCCCCCCceeeec
Q 036991 18 RVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGR-HDPTTLNRQGGDVGTQYRSGIY 96 (168)
Q Consensus 18 ~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~~-hdPt~~~~Qg~d~G~qYRs~If 96 (168)
.++||++++.+|. .|.|.|||.+++..+|++..=.. .++... .....++..+-=|.
T Consensus 38 ~~~gi~e~vp~~~---------------------sllv~fdp~~~~~~~l~~~l~~~~~~~~~~--~~~~~~r~~~IPV~ 94 (201)
T smart00796 38 PLPGVVELVPGYR---------------------SLLVHFDPLVIDPAALLARLRALEALPLAE--ALEVPGRIIEIPVC 94 (201)
T ss_pred CCCCeEEccccce---------------------EEEEEEcCCCCCHHHHHHHHHHHHhccccc--ccCCCCcEEEEeeE
Confidence 3578988876653 36699999999999887754221 122111 11223356666677
Q ss_pred cCCH
Q 036991 97 YYNE 100 (168)
Q Consensus 97 ~~~~ 100 (168)
|.++
T Consensus 95 Y~~~ 98 (201)
T smart00796 95 YGGE 98 (201)
T ss_pred eCCC
Confidence 7764
No 19
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=50.33 E-value=21 Score=34.93 Aligned_cols=46 Identities=24% Similarity=0.473 Sum_probs=38.1
Q ss_pred cCCcchhhhhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCC-HHHHHHHH
Q 036991 6 AGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCP-YTNLLSVF 71 (168)
Q Consensus 6 ~GCFWg~E~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is-~~~Ll~~f 71 (168)
+.|-|-+| .+.+++||.+.+|-++ +|.+.|.||++.++ .+++...-
T Consensus 14 a~C~~~ie-~l~~~~gV~~~~vn~~-------------------t~~~~v~~~~~~~~~~~~~~~~v 60 (713)
T COG2217 14 AACASRIE-ALNKLPGVEEARVNLA-------------------TERATVVYDPEEVDLPADIVAAV 60 (713)
T ss_pred HHHHHHHH-HHhcCCCeeEEEeecc-------------------cceEEEEecccccccHHHHHHHH
Confidence 45889999 9999999999998776 45688999998888 67777664
No 20
>KOG4309 consensus Transcription mediator-related factor [Transcription]
Probab=46.74 E-value=54 Score=27.28 Aligned_cols=50 Identities=22% Similarity=0.370 Sum_probs=34.9
Q ss_pred eeEEEEEEcCCCCC------HHHHHHHHHhcCCCCCCCCCCCCCCCCceeeeccCCHHHH
Q 036991 50 VEVVRVQFDPQVCP------YTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQA 103 (168)
Q Consensus 50 ~EaV~V~yDp~~is------~~~Ll~~f~~~hdPt~~~~Qg~d~G~qYRs~If~~~~~q~ 103 (168)
-=+|+|+|||.+|- +.+.|.-||..|-|+.. .-.|.+=...||-.-+.-+
T Consensus 139 Gi~vEIEY~pcvI~~~Cw~M~~Eflqsflg~~~p~aP----~~fg~t~h~~~y~p~DTm~ 194 (217)
T KOG4309|consen 139 GISVEIEYGPCVIASDCWSMLLEFLQSFLGSHTPGAP----AVFGNTRHDAVYGPADTMV 194 (217)
T ss_pred eEEEEEeeCCEEEhHHHHHHHHHHHHHHhcccCCCch----HhhcCccCccccCcHHHHH
Confidence 35799999999985 46778889999998854 3345555566665554433
No 21
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=46.31 E-value=42 Score=28.16 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCCCCCC---CCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhc
Q 036991 64 YTNLLSVFWGRHDPTTLNR---QGGDVGTQYRSGIYYYNETQARLARESMEAKQLEM 117 (168)
Q Consensus 64 ~~~Ll~~f~~~hdPt~~~~---Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~ 117 (168)
+..||-..+..+|||...- -++.+-.-||-|||..+...++...+...++...+
T Consensus 132 l~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~dvl~~ig~efk~vl 188 (217)
T COG5053 132 LRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDVLGAIGNEFKQVL 188 (217)
T ss_pred HHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCCCcHHHHHHHHHHHHhcc
Confidence 4567778899999964321 24666788999999999999999988888886644
No 22
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=45.96 E-value=14 Score=27.01 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=14.3
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHHhcCCC
Q 036991 48 NHVEVVRVQFDPQVCPYTNLLSVFWGRHDP 77 (168)
Q Consensus 48 gH~EaV~V~yDp~~is~~~Ll~~f~~~hdP 77 (168)
|.+-.=.|.|||+++|-++||+.+ .-..|
T Consensus 33 gYar~g~VifDe~kl~~e~lL~~l-e~~kp 61 (88)
T PF11491_consen 33 GYARNGFVIFDESKLSKEELLEML-EEFKP 61 (88)
T ss_dssp TTSS--EEE--B-S-SHHHH---H-HHTTT
T ss_pred ccccceEEEECcccCCHHHHHHHH-HhcCh
Confidence 455556799999999999999765 33345
No 23
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=43.01 E-value=1.3e+02 Score=25.66 Aligned_cols=79 Identities=9% Similarity=0.085 Sum_probs=51.3
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEE
Q 036991 48 NHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEI 127 (168)
Q Consensus 48 gH~EaV~V~yDp~~is~~~Ll~~f~~~hdPt~~~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI 127 (168)
+|-|.+.|..+| ..++-++|+..-...||+..-|.|+..|-==.-++.+....- .+.+..+.. +. ++. .++|
T Consensus 17 ~~~q~y~v~~~~-~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~InG~p~----laC~t~~~~-~~-~~~-~iti 88 (251)
T PRK12386 17 GELQDYTVEVNE-GEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEINGRPR----LMCMTRMST-FD-EDE-TVTV 88 (251)
T ss_pred CceEEEEEeCCC-CCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEECccEe----ccHHhHHHH-hC-CCC-eEEE
Confidence 478889999987 467777776655567999999988888766666777766442 222222221 21 122 4788
Q ss_pred ecCCCcc
Q 036991 128 LPAKRFY 134 (168)
Q Consensus 128 ~p~~~Fy 134 (168)
+|+.+|-
T Consensus 89 epl~~fp 95 (251)
T PRK12386 89 TPMRTFP 95 (251)
T ss_pred ccCCCCC
Confidence 9987654
No 24
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.94 E-value=26 Score=26.38 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=15.8
Q ss_pred CCceeEEEEEEcCCCCC
Q 036991 47 TNHVEVVRVQFDPQVCP 63 (168)
Q Consensus 47 tgH~EaV~V~yDp~~is 63 (168)
+|+-|++.|..||+.+.
T Consensus 47 ~G~~ev~~v~Idp~l~d 63 (105)
T COG0718 47 NGKGEVKSVEIDPSLLD 63 (105)
T ss_pred eCCCcEEEEEeCHHHcC
Confidence 68899999999999997
No 25
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=40.69 E-value=82 Score=22.34 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCcccChhHHHHHHHhCC
Q 036991 98 YNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGG 148 (168)
Q Consensus 98 ~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~~Fy~AEeyHQ~Yl~kn~ 148 (168)
.++++++..++.++++++.. +..|++.+.+-.+-..+++|=++++.++.
T Consensus 2 Ls~~~~~~l~~~l~~~~~~t--~~~i~Vvtv~~~~~~~~~~~A~~~~~~~~ 50 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEKKT--GVQIVVVTVPSLPGQDIEDYAQQLFERWG 50 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHHC----EEEEEEESB-TTS-HHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhh--CCEEEEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 46788889999999998876 67777777766666999999999999854
No 26
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=37.64 E-value=51 Score=27.14 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=23.1
Q ss_pred hhhccCCCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHH
Q 036991 14 LAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSV 70 (168)
Q Consensus 14 ~~f~~~~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~ 70 (168)
+.+.+.+||++++.+|. + |.|.|||..+ ..+|+..
T Consensus 27 ~~l~~~~gi~e~vP~~~----------s-----------llv~fdp~~~-~~~l~~~ 61 (202)
T TIGR00370 27 AYLEEQPGFVECIPGMN----------N-----------LTVFYDMYEV-YKHLPQR 61 (202)
T ss_pred HHHhcCCCcEEeecccE----------E-----------EEEEECchhh-HHHHHHH
Confidence 33343378888876653 3 5699999877 5656554
No 27
>PRK14626 hypothetical protein; Provisional
Probab=37.55 E-value=22 Score=26.73 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=15.5
Q ss_pred CCceeEEEEEEcCCCCC
Q 036991 47 TNHVEVVRVQFDPQVCP 63 (168)
Q Consensus 47 tgH~EaV~V~yDp~~is 63 (168)
+|+-|++.|..||+.++
T Consensus 47 nG~~ev~~i~Id~~ll~ 63 (110)
T PRK14626 47 NGLGEIKDVEIDKSLLN 63 (110)
T ss_pred ECCccEEEEEECHHHcC
Confidence 58999999999999985
No 28
>PRK14627 hypothetical protein; Provisional
Probab=37.50 E-value=30 Score=25.47 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=15.4
Q ss_pred CCceeEEEEEEcCCCCC
Q 036991 47 TNHVEVVRVQFDPQVCP 63 (168)
Q Consensus 47 tgH~EaV~V~yDp~~is 63 (168)
+|.-|.+.|..||+.++
T Consensus 43 ~G~~~v~~i~Idp~ll~ 59 (100)
T PRK14627 43 NGHREVQSITISPEVVD 59 (100)
T ss_pred EcCccEEEEEECHHHcC
Confidence 58899999999999985
No 29
>PRK14624 hypothetical protein; Provisional
Probab=36.15 E-value=37 Score=25.83 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.4
Q ss_pred CCceeEEEEEEcCCCCC------HHHHHHH
Q 036991 47 TNHVEVVRVQFDPQVCP------YTNLLSV 70 (168)
Q Consensus 47 tgH~EaV~V~yDp~~is------~~~Ll~~ 70 (168)
+|.-|.+.|..||+.+. +++|+-.
T Consensus 48 nG~~~i~~i~Idp~lld~eD~E~LeDLI~a 77 (115)
T PRK14624 48 TGEGQITNVFINKQLFDADDNKMLEDLVMA 77 (115)
T ss_pred EcCccEEEEEECHHHcCcccHHHHHHHHHH
Confidence 68899999999999995 5666544
No 30
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=31.65 E-value=15 Score=17.41 Aligned_cols=6 Identities=50% Similarity=1.769 Sum_probs=4.4
Q ss_pred cCCcch
Q 036991 6 AGCFWG 11 (168)
Q Consensus 6 ~GCFWg 11 (168)
.-|||-
T Consensus 4 ~~CFWK 9 (12)
T PF02083_consen 4 SECFWK 9 (12)
T ss_pred cchhhh
Confidence 469995
No 31
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=29.49 E-value=23 Score=28.13 Aligned_cols=11 Identities=45% Similarity=1.081 Sum_probs=9.4
Q ss_pred EEEecCCcchh
Q 036991 2 AQFGAGCFWGV 12 (168)
Q Consensus 2 a~fa~GCFWg~ 12 (168)
++|--||||.-
T Consensus 60 viFvHGCFWh~ 70 (150)
T COG3727 60 VIFVHGCFWHG 70 (150)
T ss_pred EEEEeeeeccC
Confidence 68889999983
No 32
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=27.50 E-value=78 Score=28.38 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.4
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHHhc
Q 036991 47 TNHVEVVRVQFDPQVCPYTNLLSVFWGR 74 (168)
Q Consensus 47 tgH~EaV~V~yDp~~is~~~Ll~~f~~~ 74 (168)
.||+|+|-|+++ +.++.+++.+.++..
T Consensus 242 ~GHse~v~ve~~-~~~~~~e~~~~~l~~ 268 (334)
T COG0136 242 YGHSEAVTVEFK-KDVDPEEIREELLPS 268 (334)
T ss_pred cccceEEEEEec-CCCCHHHHHHHHhcc
Confidence 589999999998 468999988777544
No 33
>PF09299 Mu-transpos_C: Mu transposase, C-terminal; InterPro: IPR015378 This domain is found in various prokaryotic integrases and transposases. It adopts a beta-barrel structure with Greek-key topology []. ; PDB: 1BCO_A 1BCM_B.
Probab=26.41 E-value=34 Score=22.35 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=9.4
Q ss_pred eEEEEEEcCCCCC
Q 036991 51 EVVRVQFDPQVCP 63 (168)
Q Consensus 51 EaV~V~yDp~~is 63 (168)
+.|.|.|||..++
T Consensus 36 ~~V~vryDp~dl~ 48 (62)
T PF09299_consen 36 QKVRVRYDPDDLS 48 (62)
T ss_dssp SEEEEEE-GGGTT
T ss_pred CEEEEEECcccCC
Confidence 3499999998764
No 34
>PRK00587 hypothetical protein; Provisional
Probab=26.39 E-value=44 Score=24.70 Aligned_cols=17 Identities=0% Similarity=0.343 Sum_probs=15.3
Q ss_pred CCceeEEEEEEcCCCCC
Q 036991 47 TNHVEVVRVQFDPQVCP 63 (168)
Q Consensus 47 tgH~EaV~V~yDp~~is 63 (168)
+|.-|.+.|..||+.+.
T Consensus 42 nG~~~i~~i~Idp~lld 58 (99)
T PRK00587 42 KGNLNIEKIEINKELID 58 (99)
T ss_pred EcCccEEEEEECHHHcC
Confidence 57899999999999984
No 35
>PRK03762 hypothetical protein; Provisional
Probab=26.35 E-value=45 Score=24.80 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=18.0
Q ss_pred CCceeEEEEEEcCCCC-CHHHHHHH
Q 036991 47 TNHVEVVRVQFDPQVC-PYTNLLSV 70 (168)
Q Consensus 47 tgH~EaV~V~yDp~~i-s~~~Ll~~ 70 (168)
+|+-|++.|..||+.+ +-+.|-+.
T Consensus 47 nG~~~i~~i~Id~~ll~D~e~LeDL 71 (103)
T PRK03762 47 NGKGEVIDISIDDSLLEDKESLQIL 71 (103)
T ss_pred EcCceEEEEEECHHHcCCHHHHHHH
Confidence 5899999999999988 44444333
No 36
>cd02145 BluB Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis. Nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.
Probab=26.04 E-value=2.2e+02 Score=22.26 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=33.0
Q ss_pred EEcCCCCCHHHHHHHHHhc-CCCCCCCCCCCCCCCCceeeeccCCHHHHHHHHHH
Q 036991 56 QFDPQVCPYTNLLSVFWGR-HDPTTLNRQGGDVGTQYRSGIYYYNETQARLARES 109 (168)
Q Consensus 56 ~yDp~~is~~~Ll~~f~~~-hdPt~~~~Qg~d~G~qYRs~If~~~~~q~~~a~~~ 109 (168)
.||++.|+-++|-+++-.. .-|+..|.|.- ..|.+.+++.++...+.
T Consensus 12 ~F~~~~V~~e~i~~ileaA~~APS~~N~Qpw-------~fvVv~~~~~~~~l~~~ 59 (196)
T cd02145 12 HFFPDPVPEEVLERLLAAAHHAPSVGLSQPW-------RFIRVRDPATRAAIKAL 59 (196)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCcCCCCCe-------EEEEEcCHHHHHHHHHH
Confidence 5888899988888887655 46998887652 44666777666644433
No 37
>PRK01844 hypothetical protein; Provisional
Probab=25.55 E-value=33 Score=24.24 Aligned_cols=20 Identities=30% Similarity=0.472 Sum_probs=17.1
Q ss_pred CCcccChhHHHHHHHhCCCC
Q 036991 131 KRFYRAEEYHQQYLEKGGGR 150 (168)
Q Consensus 131 ~~Fy~AEeyHQ~Yl~kn~~~ 150 (168)
.-||-|--|-.+||++||--
T Consensus 20 ~Gff~ark~~~k~lk~NPpi 39 (72)
T PRK01844 20 LGFFIARKYMMNYLQKNPPI 39 (72)
T ss_pred HHHHHHHHHHHHHHHHCCCC
Confidence 35889999999999999854
No 38
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=25.32 E-value=97 Score=27.63 Aligned_cols=26 Identities=8% Similarity=-0.049 Sum_probs=22.2
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHHh
Q 036991 47 TNHVEVVRVQFDPQVCPYTNLLSVFWG 73 (168)
Q Consensus 47 tgH~EaV~V~yDp~~is~~~Ll~~f~~ 73 (168)
.||+|+|-|+++. .+|.+++.+.+-.
T Consensus 227 ~GHs~sV~ve~e~-~~~~e~~~~~l~~ 252 (322)
T PRK06901 227 YGLAQMVTALSEY-ELDIESQLAEWQQ 252 (322)
T ss_pred ccEEEEEEEEECC-CCCHHHHHHHHHh
Confidence 5899999999976 4999999988753
No 39
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=24.49 E-value=63 Score=25.16 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=31.9
Q ss_pred hhhhhccC--CCeeEEEeeecCCCCCCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHHh
Q 036991 12 VELAFQRV--VGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWG 73 (168)
Q Consensus 12 ~E~~f~~~--~GVv~t~vGYagG~~~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~~ 73 (168)
+++.+..| .|++.+.-|=-|| .++.-+|+.||+.++++.+=.
T Consensus 41 L~kIl~~L~~aGlv~S~rG~~GG--------------------y~La~~p~eItl~dIi~aveg 84 (153)
T PRK11920 41 LFKILQPLVEAGLVETVRGRNGG--------------------VRLGRPAADISLFDVVRVTED 84 (153)
T ss_pred HHHHHHHHHHCCCEEeecCCCCC--------------------eeecCCHHHCcHHHHHHHHcC
Confidence 45556655 5888888886666 457778999999999998743
No 40
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=23.94 E-value=1.1e+02 Score=23.54 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=22.4
Q ss_pred ccCCHHHHHHHHHHHHHHHhhccCCCceEEEEecCC
Q 036991 96 YYYNETQARLARESMEAKQLEMKDQRKIVTEILPAK 131 (168)
Q Consensus 96 f~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI~p~~ 131 (168)
|..|+..++-|-..+.++.... ++|++++|.|-+
T Consensus 1 ~Lr~~~~r~~a~~~I~~~p~d~--~~p~~v~i~~~~ 34 (127)
T PF05772_consen 1 FLRNERIRQNAIQAIKQLPADD--GKPLVVTIKPPK 34 (127)
T ss_dssp -ESSHHHHHHHHHHHHT----S--SS-EEEEEEE-S
T ss_pred CCcCHHHHHHHHHHHHhcCcCC--CCCEEEEeeCCC
Confidence 4567888888888888885433 689999999964
No 41
>cd02144 iodotyrosine_dehalogenase Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney, using NADPH as electron donor. This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers.
Probab=22.65 E-value=2.3e+02 Score=21.65 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=31.0
Q ss_pred EEcCCCCCHHHHHHHHHhcC-CCCCCCCCCCCCCCCceeeeccCCHHHHHH
Q 036991 56 QFDPQVCPYTNLLSVFWGRH-DPTTLNRQGGDVGTQYRSGIYYYNETQARL 105 (168)
Q Consensus 56 ~yDp~~is~~~Ll~~f~~~h-dPt~~~~Qg~d~G~qYRs~If~~~~~q~~~ 105 (168)
.|+++.|+-++|-+++.... -|+..|.|.- | .|.+.|++.++.
T Consensus 13 ~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw------~-~vvv~~~~~~~~ 56 (193)
T cd02144 13 KFSDEPVPREVIENCIRTAGTAPSGANTQPW------T-FVVVSDPELKHR 56 (193)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCcCCCCCe------E-EEEeCCHHHHHH
Confidence 58899999998888887764 6999998753 3 344466665553
No 42
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=22.59 E-value=1.6e+02 Score=20.31 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=34.7
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCCCCCCCC--CCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhccCCCceEEEE
Q 036991 55 VQFDPQVCPYTNLLSVFWGRHDPTTLNRQ--GGDVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEI 127 (168)
Q Consensus 55 V~yDp~~is~~~Ll~~f~~~hdPt~~~~Q--g~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~TeI 127 (168)
|.||.+.-||+..++.+-+..+.+...-. -.-+-..=|+.|+..+.++.+.....+.+..+.. +.|+.++|
T Consensus 10 vL~NDe~ht~~~Vi~~L~~~~~~s~~~A~~~a~~v~~~G~avv~~~~~e~ae~~~~~l~~~g~~~--~~PL~~ti 82 (82)
T PF02617_consen 10 VLWNDEVHTFEQVIDVLRRVFGCSEEQARQIAMEVHREGRAVVGTGSREEAEEYAEKLQRAGRDS--GHPLRATI 82 (82)
T ss_dssp EEE--SSSBHHHHHHHHHHHC---HHHHHHHHHHHHHHSEEEEEEEEHHHHHHHHHHHHHHHHHT--T---EEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhHcCCEeeeeCCHHHHHHHHHHHHHHhhcc--CCCeEEeC
Confidence 77999999999999998877654421000 0000011246676666655555555554444333 45555544
No 43
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.51 E-value=1.2e+02 Score=27.09 Aligned_cols=61 Identities=16% Similarity=0.386 Sum_probs=43.1
Q ss_pred chhhhhhccCCCeeEEEeeecCCCC-----------------CCCCceeeecCCCCceeEEEEEEcCCCCCHHHHHHHHH
Q 036991 10 WGVELAFQRVVGVSKTEVGYSQGNV-----------------PDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFW 72 (168)
Q Consensus 10 Wg~E~~f~~~~GVv~t~vGYagG~~-----------------~~PtY~~Vc~g~tgH~EaV~V~yDp~~is~~~Ll~~f~ 72 (168)
|-.=....+++=|-..++|++||+- --|.|.-.| +.--+|++ +..=+|.+|- .||
T Consensus 161 ~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~rik~~~~~~Pfl~----df~r~i~~---~~~~~ydei~-~y~ 232 (321)
T COG3458 161 VRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKAVVADYPFLS----DFPRAIEL---ATEGPYDEIQ-TYF 232 (321)
T ss_pred HHHHHHHhccCccchhheEEeccccCchhhhhhhhcChhhhcccccccccc----cchhheee---cccCcHHHHH-HHH
Confidence 3334456678899999999999852 125555555 34556666 6777899987 688
Q ss_pred hcCCCC
Q 036991 73 GRHDPT 78 (168)
Q Consensus 73 ~~hdPt 78 (168)
+.|||.
T Consensus 233 k~h~~~ 238 (321)
T COG3458 233 KRHDPK 238 (321)
T ss_pred HhcCch
Confidence 999883
No 44
>PRK14629 hypothetical protein; Provisional
Probab=22.07 E-value=61 Score=24.01 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=15.4
Q ss_pred CCceeEEEEEEcCCCCC
Q 036991 47 TNHVEVVRVQFDPQVCP 63 (168)
Q Consensus 47 tgH~EaV~V~yDp~~is 63 (168)
+|.-|.+.|..||+.+.
T Consensus 45 nG~~~v~~i~Idp~lld 61 (99)
T PRK14629 45 NGEFNVKKVSIKEEFFD 61 (99)
T ss_pred EcCccEEEEEECHHHcC
Confidence 58899999999999985
No 45
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=21.57 E-value=1.2e+02 Score=27.09 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=21.7
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHH
Q 036991 47 TNHVEVVRVQFDPQVCPYTNLLSVFW 72 (168)
Q Consensus 47 tgH~EaV~V~yDp~~is~~~Ll~~f~ 72 (168)
.||+|+|-|++.. .+|.+++.+.+-
T Consensus 250 ~gHs~sv~ve~~~-~~~~~~~~~~l~ 274 (347)
T PRK06728 250 SGHSESVYIELEK-EATVAEIKEVLF 274 (347)
T ss_pred ccEEEEEEEEECC-CCCHHHHHHHHH
Confidence 5899999999976 599999998874
No 46
>PRK00523 hypothetical protein; Provisional
Probab=21.45 E-value=44 Score=23.62 Aligned_cols=20 Identities=0% Similarity=0.149 Sum_probs=17.2
Q ss_pred CCcccChhHHHHHHHhCCCC
Q 036991 131 KRFYRAEEYHQQYLEKGGGR 150 (168)
Q Consensus 131 ~~Fy~AEeyHQ~Yl~kn~~~ 150 (168)
.-||-|--|-.+||++||--
T Consensus 21 ~Gffiark~~~k~l~~NPpi 40 (72)
T PRK00523 21 IGYFVSKKMFKKQIRENPPI 40 (72)
T ss_pred HHHHHHHHHHHHHHHHCcCC
Confidence 35888999999999999854
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.00 E-value=35 Score=32.63 Aligned_cols=16 Identities=38% Similarity=0.729 Sum_probs=12.7
Q ss_pred EEecCCcchhhhhhcc
Q 036991 3 QFGAGCFWGVELAFQR 18 (168)
Q Consensus 3 ~fa~GCFWg~E~~f~~ 18 (168)
-||.||=||+|.+=..
T Consensus 397 ~fa~g~dwcle~lk~s 412 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKAS 412 (840)
T ss_pred chhcccHHHHHHHHHh
Confidence 3799999999987443
No 48
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=20.87 E-value=49 Score=29.57 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHhcCCCCCCC-CCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhcc----------CCCceEEEEecC
Q 036991 62 CPYTNLLSVFWGRHDPTTLN-RQGGDVGTQYRSGIYYYNETQARLARESMEAKQLEMK----------DQRKIVTEILPA 130 (168)
Q Consensus 62 is~~~Ll~~f~~~hdPt~~~-~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~----------~~~~i~TeI~p~ 130 (168)
+....+.+.|.-..=|-..+ -|+-..|-.==.=||+-|..+++-|+....++...+. ..-||++.+.--
T Consensus 159 v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~ 238 (323)
T COG1703 159 VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALE 238 (323)
T ss_pred hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeecc
Confidence 44455555555554454432 2555555444455778888888888777666543211 023555544433
Q ss_pred ----CCcccChhHHHHHHHhCCCC
Q 036991 131 ----KRFYRAEEYHQQYLEKGGGR 150 (168)
Q Consensus 131 ----~~Fy~AEeyHQ~Yl~kn~~~ 150 (168)
...|.|=+.|.+|+.++...
T Consensus 239 g~Gi~~L~~ai~~h~~~~~~sg~~ 262 (323)
T COG1703 239 GEGIDELWDAIEDHRKFLTESGLF 262 (323)
T ss_pred CCCHHHHHHHHHHHHHHHHhcccc
Confidence 46999999999999999853
No 49
>PF04990 RNA_pol_Rpb1_7: RNA polymerase Rpb1, domain 7; InterPro: IPR007073 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 7, represents a mobile module of the RNA polymerase. Domain 7 interacts with the lobe domain of Rpb2 (IPR007642 from INTERPRO) [, ].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_M 1Y77_A 3CQZ_A 3GTM_A 1TWA_A 4A3I_A 2NVY_A 2NVT_A 1I6H_A 1TWF_A ....
Probab=20.82 E-value=49 Score=25.71 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCCH-----HHHHHHHHhcCC
Q 036991 50 VEVVRVQFDPQVCPY-----TNLLSVFWGRHD 76 (168)
Q Consensus 50 ~EaV~V~yDp~~is~-----~~Ll~~f~~~hd 76 (168)
+...+|.|||...+= +++++.||.+-|
T Consensus 7 t~~teIyYDPdp~~Tvi~eD~e~V~~y~e~pd 38 (135)
T PF04990_consen 7 TASTEIYYDPDPRNTVIEEDREFVESYFEIPD 38 (135)
T ss_dssp ECEEEEEE-SSTTSSSSSTTHCHHHHCCCTT-
T ss_pred hhheeEEECCCCCCCcchhhHHHHHHHHhCCC
Confidence 467899999988754 789999999876
No 50
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=20.08 E-value=49 Score=25.28 Aligned_cols=11 Identities=45% Similarity=1.120 Sum_probs=9.4
Q ss_pred CEEEecCCcch
Q 036991 1 FAQFGAGCFWG 11 (168)
Q Consensus 1 ~a~fa~GCFWg 11 (168)
+|+|=-||||+
T Consensus 58 laIfVDGcfWH 68 (117)
T TIGR00632 58 CVIFIHGCFWH 68 (117)
T ss_pred EEEEEcccccc
Confidence 47888999999
Done!