BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036992
         (539 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3S8J|A Chain A, Crystal Structure Of A Papaya Latex Serine Protease
           Inhibitor (Ppi) At 2.6a Resolution
 pdb|3S8J|B Chain B, Crystal Structure Of A Papaya Latex Serine Protease
           Inhibitor (Ppi) At 2.6a Resolution
 pdb|3S8K|A Chain A, Crystal Structure Of A Papaya Latex Serine Protease
           Inhibitor (Ppi) At 1.7a Resolution
 pdb|3S8K|B Chain B, Crystal Structure Of A Papaya Latex Serine Protease
           Inhibitor (Ppi) At 1.7a Resolution
          Length = 184

 Score = 32.3 bits (72), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%)

Query: 82  IWGYIGKIEDGSLVLSEKGNKYYLFTRVQFDALYNGDQVVEIRAFSDPTSVVD--ITDDI 139
           IWG  G    G L +   GNK      V  D   NG+ ++    FS   +V D  + + +
Sbjct: 26  IWGAGG----GGLTVYGPGNKKKCPLSVVQDPFDNGEPII----FSAIKNVKDNIVRESV 77

Query: 140 EINVKFTYSIVWSETSA 156
           ++NVKF  +I  +ET+A
Sbjct: 78  DLNVKFNITINCNETTA 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,486,281
Number of Sequences: 62578
Number of extensions: 546733
Number of successful extensions: 1240
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1240
Number of HSP's gapped (non-prelim): 3
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)