Query 036992
Match_columns 539
No_of_seqs 136 out of 643
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 38.1 6.3 0.00022 31.5 -0.2 55 177-235 8-67 (79)
2 3o7q_A L-fucose-proton symport 31.9 53 0.0018 32.6 5.6 29 276-304 297-325 (438)
3 3cx5_C Cytochrome B-C1 complex 25.6 2.2E+02 0.0074 29.3 8.8 95 430-527 30-146 (385)
4 2qjy_A Cytochrome B; cytochrom 22.0 2E+02 0.007 30.1 7.9 97 428-527 43-161 (445)
5 1vf5_A Cytochrome B6; photosyn 20.3 1.3E+02 0.0045 28.4 5.5 23 461-483 76-98 (215)
6 1pw4_A Glycerol-3-phosphate tr 17.7 2E+02 0.007 28.3 6.7 26 276-301 290-315 (451)
7 3tlw_A GLR4197 protein, GLIC; 13.4 4.2E+02 0.014 25.8 7.6 47 249-296 203-249 (321)
8 1pp9_C Cytochrome B; cytochrom 13.4 3.1E+02 0.011 28.0 6.7 65 462-526 74-144 (379)
9 4f4l_A ION transport protein; 13.3 3.4E+02 0.012 22.3 5.9 44 244-287 3-51 (112)
10 2vqe_M 30S ribosomal protein S 10.8 1.1E+02 0.0038 26.4 2.0 21 54-74 47-67 (126)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=38.07 E-value=6.3 Score=31.53 Aligned_cols=55 Identities=22% Similarity=0.415 Sum_probs=29.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHh-----hchhhccCCCCcchhhccCceEEecccCCCC
Q 036992 177 IHWFSFINSIVFILLLMGLLILLILRRL-----KNDLRKCSSGDEEEDKEVGWKYIHGDVFRYP 235 (539)
Q Consensus 177 ihw~SiiNS~vivl~l~~~v~~Il~r~l-----~~D~~~y~~~~~~~~ee~GWKlvhgDVFR~P 235 (539)
.+...|+-..+..++|.+++.+++.|.+ ||+++|+++ |+....|+.-....||+|
T Consensus 8 ~n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEk----E~~~~~w~~~~NPlyk~~ 67 (79)
T 2knc_B 8 PDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEE----ERARAKWDTANNPLYKEA 67 (79)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTTTTCCHHHHC
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcccccCCCCCccCC
Confidence 3446666666666667777766666643 466666642 222334554333345544
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=31.85 E-value=53 Score=32.64 Aligned_cols=29 Identities=3% Similarity=0.083 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcCCc
Q 036992 276 STSLVLLYSLTSVVAGYITSSFHNQFSDA 304 (539)
Q Consensus 276 ~t~~i~~y~~~~~i~Gy~s~~~yk~~~g~ 304 (539)
.......+.+++.++..+++++-+.++.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~ 325 (438)
T 3o7q_A 297 AANYLTGTMVCFFIGRFTGTWLISRFAPH 325 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 33444555667777777777777766544
No 3
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=25.60 E-value=2.2e+02 Score=29.32 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=58.6
Q ss_pred cchhHHHH-HHHHHHHHHHHHHHHhhhhcc-------------cCCCCcccchhhhcCChhHHHHHHHH-----Hhhhe-
Q 036992 430 TPPGILFV-MFIILLVLTAILSIGLTYIQL-------------SVEDHEWWWRSVFRGGSTAIFMFAYS-----IYFYF- 489 (539)
Q Consensus 430 ~~fgfL~~-~~iil~i~~a~vsI~~~Y~~L-------------~~Edy~WwW~SF~~~gs~~~y~f~Ys-----i~y~~- 489 (539)
+-||.++. ++++.+++.... ..|+.- +.-||+|-.|+.-.-|++.+++.+|. +||--
T Consensus 30 w~fGsll~~~l~iqi~TGifL---am~Y~p~~~~Af~Sv~~I~~dV~~GwliR~~H~~gAs~ffi~iylHi~Rglyygsy 106 (385)
T 3cx5_C 30 WNMGSLLGLCLVIQIVTGIFM---AMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSY 106 (385)
T ss_dssp GGHHHHHHHHHHHHHHHHHHH---HTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HeeeeCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44777664 455555555433 233332 23389999999999999888888873 45533
Q ss_pred e--ecccccchhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 036992 490 R--SNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMI 527 (539)
Q Consensus 490 ~--~~~~g~~~~~~yf~y~~l~s~~~~l~~G~iGflas~~ 527 (539)
| .+.+..+..++++.-|+..=...-|=-|-.+|.++-.
T Consensus 107 ~~Pr~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~WgatV 146 (385)
T 3cx5_C 107 RSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATV 146 (385)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHH
T ss_pred CCCCcceeeecHHHHHHHHHHHHHhhhccCCcchhHHHHH
Confidence 4 4555555566666555555555566666666666544
No 4
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=22.02 E-value=2e+02 Score=30.12 Aligned_cols=97 Identities=14% Similarity=0.295 Sum_probs=58.7
Q ss_pred cccchhHHHH-HHHHHHHHHHHHHHHhhhhccc-------------CCCCcccchhhhcCChhHHHHHHHH-----Hhhh
Q 036992 428 IFTPPGILFV-MFIILLVLTAILSIGLTYIQLS-------------VEDHEWWWRSVFRGGSTAIFMFAYS-----IYFY 488 (539)
Q Consensus 428 ~y~~fgfL~~-~~iil~i~~a~vsI~~~Y~~L~-------------~Edy~WwW~SF~~~gs~~~y~f~Ys-----i~y~ 488 (539)
..+-||.++. ++++.+++.... ..|+.=+ .-||+|-.|+.-.-|++.+++.+|. +||-
T Consensus 43 ~~w~fGsll~~~l~iQilTGifL---am~Y~p~~~~Af~Sv~~I~rdV~~GwliR~~H~~gAs~ffi~iylHi~Rglyyg 119 (445)
T 2qjy_A 43 WMWIWGVVLAFCLVLQIVTGIVL---AMHYTPHVDLAFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLYYG 119 (445)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHH---HTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH---HeeccCCcHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455887774 455555555433 2333322 2389999999998898888888873 4553
Q ss_pred e-e--ecccccchhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 036992 489 F-R--SNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMI 527 (539)
Q Consensus 489 ~-~--~~~~g~~~~~~yf~y~~l~s~~~~l~~G~iGflas~~ 527 (539)
- | .+.+..+..++++.-|+..=...-|=-|-.+|.++-.
T Consensus 120 sY~~Pr~~~W~~Gv~l~ll~m~taF~GYvLPwgQmSfWgatV 161 (445)
T 2qjy_A 120 SYKAPREVTWIVGMLIYLAMMATAFMGYVLPWGQMSFWGATV 161 (445)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHH
T ss_pred ccCCCccceeeehHHHHHHHHHHHHHheeccCCccchHHHHH
Confidence 3 4 4555555556666555555555555556666665544
No 5
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=20.26 E-value=1.3e+02 Score=28.36 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=20.3
Q ss_pred CCCcccchhhhcCChhHHHHHHH
Q 036992 461 EDHEWWWRSVFRGGSTAIFMFAY 483 (539)
Q Consensus 461 Edy~WwW~SF~~~gs~~~y~f~Y 483 (539)
-||+|--|+.-.-|++.+++.+|
T Consensus 76 v~~GwliR~~H~~gAs~ffi~~y 98 (215)
T 1vf5_A 76 VSFGWLIRSIHRWSASMMVLMMI 98 (215)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhccchHHHHHHHHHHHH
Confidence 38999999999888888888887
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=17.66 E-value=2e+02 Score=28.29 Aligned_cols=26 Identities=12% Similarity=0.237 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhc
Q 036992 276 STSLVLLYSLTSVVAGYITSSFHNQF 301 (539)
Q Consensus 276 ~t~~i~~y~~~~~i~Gy~s~~~yk~~ 301 (539)
.......+.+++.+++..++++.+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 290 SSWAYFLYEYAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667788888888887776
No 7
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=13.44 E-value=4.2e+02 Score=25.78 Aligned_cols=47 Identities=4% Similarity=0.025 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHHHHhhccCcCCCchHHHHHHHHHHHhhhhhhhhhhh
Q 036992 249 NQLLTIVCILFVLAFLGILYPYNRGLLSTSLVLLYSLTSVVAGYITSS 296 (539)
Q Consensus 249 ~Qll~~~~~~~~~a~~g~~~~~~~g~l~t~~i~~y~~~~~i~Gy~s~~ 296 (539)
+|+.+=.+++++++.+++. |...|.-++..+........+...++..
T Consensus 203 ~~~~iP~~li~~ls~~sF~-p~~~~~Rv~l~it~lL~~t~~~~~~~~~ 249 (321)
T 3tlw_A 203 PNIILPMLFILFISWTAFW-STSYEANVTLVVSTLIAHIAFNILVETC 249 (321)
T ss_dssp HHTHHHHHHHHHHHGGGGG-CCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHhheeec-cCCCCCcEEEEhhHHHHHHHHHHHHHhh
Confidence 5677767777888999999 8777766666665555555444444443
No 8
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=13.41 E-value=3.1e+02 Score=28.03 Aligned_cols=65 Identities=18% Similarity=0.328 Sum_probs=39.0
Q ss_pred CCcccchhhhcCChhHHHHHHHH-----Hhhhe-eecccccchhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 036992 462 DHEWWWRSVFRGGSTAIFMFAYS-----IYFYF-RSNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASM 526 (539)
Q Consensus 462 dy~WwW~SF~~~gs~~~y~f~Ys-----i~y~~-~~~~~g~~~~~~yf~y~~l~s~~~~l~~G~iGflas~ 526 (539)
||+|-.|+.-.-|++.+++.+|. +||-- |...+..+..++++.-|+..=...-|=-|-.+|.++-
T Consensus 74 ~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~Wgat 144 (379)
T 1pp9_C 74 NYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGAT 144 (379)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCcceehhhHHHHHHHHHHHheeeeccCcchhHHHHH
Confidence 79999999998888888888873 44433 3322444444555544444444444444555555543
No 9
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=13.33 E-value=3.4e+02 Score=22.35 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=24.4
Q ss_pred eecccchHHHHHHHHHHHHHhhcc-----CcCCCchHHHHHHHHHHHhh
Q 036992 244 VMGVGNQLLTIVCILFVLAFLGIL-----YPYNRGLLSTSLVLLYSLTS 287 (539)
Q Consensus 244 lvG~G~Qll~~~~~~~~~a~~g~~-----~~~~~g~l~t~~i~~y~~~~ 287 (539)
..|.|-=.+++.++..++|.+|.. .|.+-+++.++.+.+|.++.
T Consensus 3 ~~g~~nv~~ll~l~~~ifAi~G~~lFg~~~~~~F~~~~~s~ltLF~i~T 51 (112)
T 4f4l_A 3 HMGVGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMT 51 (112)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHCCCccccccCHHHHHHHHHHHHH
Confidence 345565566666666677776653 24444667777777776654
No 10
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=10.84 E-value=1.1e+02 Score=26.44 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.6
Q ss_pred ccCHHHHHHHHHHHHhcceEE
Q 036992 54 KLKVDEVAKFRKAVADDFYFQ 74 (539)
Q Consensus 54 ~~t~~~~~~~~~~I~~~Y~~~ 74 (539)
.+|++|++++.+.|+++|.++
T Consensus 47 ~Lt~~ei~~l~~~i~~~~~ve 67 (126)
T 2vqe_M 47 DLTEAEVVRLREYVENTWKLE 67 (126)
T ss_dssp GCCHHHHHHHHHHHHTTSCCH
T ss_pred cCCHHHHHHHHHHHHHhCcch
Confidence 689999999999999888654
Done!