Query 036992
Match_columns 539
No_of_seqs 136 out of 643
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 12:22:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036992.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036992hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjc2 f.21.1.2 (C:15-260) Mi 24.6 71 0.0051 28.5 7.0 98 428-528 15-132 (246)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 21.2 1.9E+02 0.014 25.7 9.9 30 277-306 288-317 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 14.6 23 0.0017 31.7 1.0 28 277-304 262-289 (417)
4 d3cx5c2 f.21.1.2 (C:1-261) Mit 13.5 2.3E+02 0.017 25.1 7.8 100 428-530 28-149 (261)
5 d1q90d_ f.32.1.1 (D:) Subunit 11.0 2.7E+02 0.019 22.7 6.9 37 375-412 59-101 (156)
6 d1r7ma2 d.95.2.1 (A:121-225) D 9.9 80 0.0058 24.1 2.8 31 47-77 39-69 (105)
7 d2iuba2 f.17.3.1 (A:286-349) M 9.6 69 0.005 22.1 2.1 25 346-370 5-29 (64)
8 d1sdia_ a.198.1.1 (A:) Hypothe 9.6 54 0.0039 28.8 1.7 24 286-309 169-192 (213)
9 d1ijwc_ a.4.1.2 (C:) HIN recom 8.2 1.1E+02 0.0077 20.0 2.4 19 53-71 4-22 (47)
10 d1uura2 b.2.5.5 (A:360-576) ST 8.1 17 0.0012 31.4 -2.3 64 105-186 94-157 (217)
No 1
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.62 E-value=71 Score=28.48 Aligned_cols=98 Identities=15% Similarity=0.239 Sum_probs=53.8
Q ss_pred cccchhHHHHH-HHHHHHHHHHHHHHhhhhcccC-------------CCCcccchhhhcCChhHHHHHHH-----HHhhh
Q 036992 428 IFTPPGILFVM-FIILLVLTAILSIGLTYIQLSV-------------EDHEWWWRSVFRGGSTAIFMFAY-----SIYFY 488 (539)
Q Consensus 428 ~y~~fgfL~~~-~iil~i~~a~vsI~~~Y~~L~~-------------Edy~WwW~SF~~~gs~~~y~f~Y-----si~y~ 488 (539)
.+|-+|.++.. +++.+++... +..|+.-+. -+++|-.|+.-.-|++..++.+| .+||-
T Consensus 15 ~~w~~G~ll~~~~~iqiiTGi~---L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~~ 91 (246)
T d1ppjc2 15 SWWNFGSLLGICLILQILTGLF---LAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYG 91 (246)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHH---HHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHhc
Confidence 44567877744 4445555443 334444433 27899999998878887777666 23332
Q ss_pred e-eecccccchhhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 036992 489 F-RSNMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMIF 528 (539)
Q Consensus 489 ~-~~~~~g~~~~~~yf~y~~l~s~~~~l~~G~iGflas~~F 528 (539)
. |..-.-....++++.-++..=...-|=.|-.||.|+-..
T Consensus 92 sy~~~~~w~~G~~l~~l~m~~af~GY~Lpw~qms~wa~~V~ 132 (246)
T d1ppjc2 92 SYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATVI 132 (246)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHeeccCCCcchhHHHHHHH
Confidence 3 332223333444444444444444455566666665543
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=21.22 E-value=1.9e+02 Score=25.69 Aligned_cols=30 Identities=7% Similarity=0.140 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcCCcch
Q 036992 277 TSLVLLYSLTSVVAGYITSSFHNQFSDAGW 306 (539)
Q Consensus 277 t~~i~~y~~~~~i~Gy~s~~~yk~~~g~~W 306 (539)
......+.+.+.++...++++-+.++.++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 317 (447)
T d1pw4a_ 288 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNR 317 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCH
T ss_pred hhhhhcchhhhhhhhhhhhhhhhhcccccc
Confidence 334455556666777777777666655443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=14.59 E-value=23 Score=31.68 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcCCc
Q 036992 277 TSLVLLYSLTSVVAGYITSSFHNQFSDA 304 (539)
Q Consensus 277 t~~i~~y~~~~~i~Gy~s~~~yk~~~g~ 304 (539)
........+.+.+++..++++-++.+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~ 289 (417)
T d1pv7a_ 262 GYVTTMGELLNASIMFFAPLIINRIGGK 289 (417)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHCHH
T ss_pred cccccccccccccchhhhhhhhcccccc
Confidence 3344455566777777777777655443
No 4
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.47 E-value=2.3e+02 Score=25.12 Aligned_cols=100 Identities=16% Similarity=0.237 Sum_probs=61.0
Q ss_pred cccchhHHHHHHH-HHHHHHHHHHHHhhhhcccCC-------------CCcccchhhhcCChhHHHHHHHH-----Hhhh
Q 036992 428 IFTPPGILFVMFI-ILLVLTAILSIGLTYIQLSVE-------------DHEWWWRSVFRGGSTAIFMFAYS-----IYFY 488 (539)
Q Consensus 428 ~y~~fgfL~~~~i-il~i~~a~vsI~~~Y~~L~~E-------------dy~WwW~SF~~~gs~~~y~f~Ys-----i~y~ 488 (539)
..|-+|.++...+ +.+++... +..|++-+.+ +++|-.|+.-.-|++.+++.+|. +||-
T Consensus 28 ~~w~~G~ll~~~~~iqiiTGi~---L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~g 104 (261)
T d3cx5c2 28 YWWNMGSLLGLCLVIQIVTGIF---MAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYG 104 (261)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHH---HHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhc
Confidence 3345677765444 44555443 3344444332 68999999988888888777762 3332
Q ss_pred e-ee--cccccchhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 036992 489 F-RS--NMSGFLQLSFFLGYNAAMCYAFFLILGSISFRASMIFVR 530 (539)
Q Consensus 489 ~-~~--~~~g~~~~~~yf~y~~l~s~~~~l~~G~iGflas~~Fv~ 530 (539)
. |. ++.-.+..++++.-++..=...-|-.|-.+|.++-....
T Consensus 105 sy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~ 149 (261)
T d3cx5c2 105 SYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITN 149 (261)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHH
T ss_pred cccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHH
Confidence 2 32 334455566666666666666677777778777766544
No 5
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=11.01 E-value=2.7e+02 Score=22.67 Aligned_cols=37 Identities=24% Similarity=0.475 Sum_probs=22.3
Q ss_pred CCCCcccCCCCCCCCCCCCccCccchhh------hcchhhHHHH
Q 036992 375 FQAPSALNRYPREIPPLPWYQKSPCQMF------IVGLLSFSTI 412 (539)
Q Consensus 375 ~~~P~~~n~ipR~IP~~p~y~~~~~~~l------~~GilPF~~i 412 (539)
...|......|-+| +..||--....++ ++|++..+.+
T Consensus 59 lgepANP~~TP~hI-~PEWYFL~~yaiLR~iP~kl~GVi~~~~~ 101 (156)
T d1q90d_ 59 MGEPANPFATPLEI-LPEWYFYPVFQILRVVPNKLLGVLLMAAV 101 (156)
T ss_dssp CCCBCCTTCCCSSC-CCCGGGHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCC-CcchhhHHHHHHHHhCChHHHHHHHHHHH
Confidence 33344445556666 3359987776666 7786655544
No 6
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.95 E-value=80 Score=24.10 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=25.8
Q ss_pred cccccccccCHHHHHHHHHHHHhcceEEEEe
Q 036992 47 GVTLCSKKLKVDEVAKFRKAVADDFYFQMYY 77 (539)
Q Consensus 47 c~~lC~~~~t~~~~~~~~~~I~~~Y~~~~~i 77 (539)
...+|+..+|.+|++.+.+.+.+.|..+-.+
T Consensus 39 ~i~l~T~~Ft~~e~~~L~~~L~~kf~l~~~i 69 (105)
T d1r7ma2 39 SIVLNTQSFTFEEVEYLVKGLRNKFQLNCYV 69 (105)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCceEEE
Confidence 4578999999999999999999998654443
No 7
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=9.60 E-value=69 Score=22.09 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhhhhhhhchhccc
Q 036992 346 IMVIVFIYMLFAVPLLALGGRIGYW 370 (539)
Q Consensus 346 i~~l~~lw~~v~~PL~~lG~~~g~~ 370 (539)
.+..+..+-.+-+|++++.|++|-+
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN 29 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMN 29 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3456677777889999999999975
No 8
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli [TaxId: 562]}
Probab=9.60 E-value=54 Score=28.78 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=20.3
Q ss_pred hhhhhhhhhhhhhhhcCCcchhHH
Q 036992 286 TSVVAGYITSSFHNQFSDAGWERS 309 (539)
Q Consensus 286 ~~~i~Gy~s~~~yk~~~g~~W~~~ 309 (539)
+-.+||-=|+.++++.||++|+..
T Consensus 169 ALLLAGIRaavLWrQ~GG~Rwqll 192 (213)
T d1sdia_ 169 ATLLAGIRAAVLWHQVGGGRLQLM 192 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhhHH
Confidence 445688999999999999999754
No 9
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=8.19 E-value=1.1e+02 Score=20.03 Aligned_cols=19 Identities=5% Similarity=0.226 Sum_probs=16.6
Q ss_pred cccCHHHHHHHHHHHHhcc
Q 036992 53 KKLKVDEVAKFRKAVADDF 71 (539)
Q Consensus 53 ~~~t~~~~~~~~~~I~~~Y 71 (539)
.++|++|++.++++++++.
T Consensus 4 ~~lt~~q~~~a~~l~~~G~ 22 (47)
T d1ijwc_ 4 RAINKHEQEQISRLLEKGH 22 (47)
T ss_dssp CSSCHHHHHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHHHHHCCC
Confidence 5789999999999998765
No 10
>d1uura2 b.2.5.5 (A:360-576) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}
Probab=8.06 E-value=17 Score=31.41 Aligned_cols=64 Identities=16% Similarity=0.290 Sum_probs=33.9
Q ss_pred EeeeEEEEEEEeCCeEEEEEEEeCCCCccccCCCCceeEEEEEEEEEeecCcccchhhhhhcccCCCCCCcchhhhHHHH
Q 036992 105 LFTRVQFDALYNGDQVVEIRAFSDPTSVVDITDDIEINVKFTYSIVWSETSAQFETRMDKYSRASSLPTLHKIHWFSFIN 184 (539)
Q Consensus 105 l~NH~~f~I~yn~~~IV~~~v~~~~~~~~~~~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~y~~~~~~~~~~~ihw~SiiN 184 (539)
..-|+-.+|.--++.++.+| +.+..|. |..|=.-+|++++ ...+..+.+.+..+|-|-+.+|
T Consensus 94 v~LkF~~~ik~~~~~~~~Ve--S~~ssPf---------IVITNecQwe~s~-------G~LLkkdaF~~~~EItW~~f~N 155 (217)
T d1uura2 94 VNLKFGVNIRDLDNVTTTVE--SDASNPF---------VVITNECQWEGSA-------GVLLKKDAFDGQLEITWAQFIN 155 (217)
T ss_dssp BEEEEEEEEEETTSCEEEEE--CCCCCCB---------EEESSTTTHHHHH-------HHHHHHHHHSSCSEEEHHHHHH
T ss_pred eeEEEEEEEEecCCeEEecc--CCCCCCE---------EEEeccccccccc-------CeEEehhhcCCcccccHHHHHH
Confidence 34444445544556555444 4333332 2233233465554 4455444456677999998888
Q ss_pred HH
Q 036992 185 SI 186 (539)
Q Consensus 185 S~ 186 (539)
.+
T Consensus 156 ~L 157 (217)
T d1uura2 156 TL 157 (217)
T ss_dssp HH
T ss_pred HH
Confidence 53
Done!