BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036994
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I2N|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
pdb|1I2N|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
Length = 316
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 36 AISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDS 80
A++ GL L LVPG +++ARL+ D + S R + D+
Sbjct: 77 AVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDA 121
>pdb|1I2P|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
pdb|1I2P|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
Length = 316
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 36 AISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDS 80
A++ GL L LVPG +++ARL+ D + S R + D+
Sbjct: 77 AVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDA 121
>pdb|1UCW|A Chain A, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
pdb|1UCW|B Chain B, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
Length = 317
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 36 AISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDS 80
A++ GL L LVPG +++ARL+ D + S R + D+
Sbjct: 78 AVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDA 122
>pdb|1I2R|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant S176a
pdb|1I2R|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant S176a
Length = 316
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 36 AISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDS 80
A++ GL L LVPG +++ARL+ D + S R + D+
Sbjct: 77 AVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDA 121
>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase
pdb|3UNV|B Chain B, Pantoea Agglomerans Phenylalanine Aminomutase
Length = 547
Score = 29.3 bits (64), Expect = 0.56, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 16 RKEMKGLRFIVAMSLFCTCQAI 37
R+++K L+++ + L C CQA+
Sbjct: 468 REQLKNLKYVFSFELLCACQAV 489
>pdb|1ONR|A Chain A, Structure Of Transaldolase B
pdb|1ONR|B Chain B, Structure Of Transaldolase B
Length = 316
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 36 AISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDS 80
A++ GL L LVPG +++ARL+ D + S R + D+
Sbjct: 77 AVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDA 121
>pdb|1I2Q|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
pdb|1I2Q|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
Length = 316
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 36 AISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDS 80
A++ GL L LVPG +++ARL+ D + S R + D+
Sbjct: 77 AVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDA 121
>pdb|3CWN|A Chain A, Escherichia Coli Transaldolase B Mutant F178y
pdb|3CWN|B Chain B, Escherichia Coli Transaldolase B Mutant F178y
Length = 337
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 36 AISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDS 80
A++ GL L LVPG +++ARL+ D + S R + D+
Sbjct: 98 AVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDA 142
>pdb|3KOF|A Chain A, Crystal Structure Of The Double Mutant F178yR181E OF
E.COLI Transaldolase B
pdb|3KOF|B Chain B, Crystal Structure Of The Double Mutant F178yR181E OF
E.COLI Transaldolase B
Length = 337
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 36 AISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDS 80
A++ GL L LVPG +++ARL+ D + S R + D+
Sbjct: 98 AVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDA 142
>pdb|1I2O|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
pdb|1I2O|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
Length = 316
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 36 AISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDS 80
A++ GL L LVPG ++ARL+ D + S R + D+
Sbjct: 77 AVNIGLEILKLVPGRISTAVDARLSYDTEASIAKAKRLIKLYNDA 121
>pdb|1SY7|A Chain A, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution.
pdb|1SY7|B Chain B, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution
Length = 715
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 57 ARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLY 108
ARLT+DY + W IV D + PS+L PF + +R+M +
Sbjct: 18 ARLTTDYGVKQTTADDWLRIVSDDK------IGPSLLEDPFAR---ERIMRF 60
>pdb|3EL6|A Chain A, Crystal Structure Of The Erythromycin Dehydratase
Length = 313
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 42 HPLIL----VPGNGGNQLEARLTSDYKP 65
HPL+L VPG+GG RL++D +P
Sbjct: 37 HPLLLAAVDVPGHGGAVFTGRLSTDEQP 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,211,580
Number of Sequences: 62578
Number of extensions: 160614
Number of successful extensions: 473
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 15
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)