Query 036994
Match_columns 129
No_of_seqs 105 out of 195
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2369 Lecithin:cholesterol a 99.6 1.1E-15 2.3E-20 134.1 6.6 79 41-129 30-113 (473)
2 PLN02733 phosphatidylcholine-s 99.6 1.8E-15 3.9E-20 131.3 4.3 68 39-128 17-85 (440)
3 PF02450 LCAT: Lecithin:choles 99.2 7.5E-12 1.6E-16 106.1 4.0 47 83-129 1-47 (389)
4 PLN02517 phosphatidylcholine-s 99.1 6.9E-11 1.5E-15 107.0 3.0 72 39-129 72-145 (642)
5 PF07819 PGAP1: PGAP1-like pro 79.9 1.2 2.5E-05 35.5 1.8 16 40-55 3-18 (225)
6 TIGR02972 TMAO_torE trimethyla 73.2 2.2 4.8E-05 27.2 1.4 20 11-30 2-21 (47)
7 PF06796 NapE: Periplasmic nit 55.0 12 0.00027 24.6 2.3 20 11-30 10-29 (56)
8 PF04083 Abhydro_lipase: Parti 45.1 14 0.0003 24.2 1.4 17 38-54 40-56 (63)
9 PRK11372 lysozyme inhibitor; P 38.7 23 0.00049 25.7 1.8 19 18-36 2-20 (109)
10 PRK11126 2-succinyl-6-hydroxy- 38.4 22 0.00048 26.4 1.8 13 42-54 3-15 (242)
11 PF06028 DUF915: Alpha/beta hy 37.5 16 0.00036 29.9 1.0 16 39-54 9-24 (255)
12 PF15232 DUF4585: Domain of un 36.2 30 0.00066 24.1 2.0 14 104-117 29-42 (75)
13 TIGR03695 menH_SHCHC 2-succiny 35.8 24 0.00052 25.1 1.5 14 42-55 2-15 (251)
14 PRK10349 carboxylesterase BioH 33.9 25 0.00054 26.7 1.5 13 42-54 14-26 (256)
15 PF06821 Ser_hydrolase: Serine 33.9 25 0.00054 26.8 1.4 11 44-54 1-11 (171)
16 TIGR01738 bioH putative pimelo 33.5 32 0.00069 24.6 1.9 14 41-54 4-17 (245)
17 PF01674 Lipase_2: Lipase (cla 32.8 27 0.00058 28.1 1.5 12 42-53 2-13 (219)
18 PF00975 Thioesterase: Thioest 32.2 28 0.00061 25.9 1.5 14 42-55 1-14 (229)
19 PRK10673 acyl-CoA esterase; Pr 31.3 38 0.00083 25.3 2.1 16 39-54 14-29 (255)
20 TIGR02240 PHA_depoly_arom poly 31.1 35 0.00076 26.4 1.9 15 41-55 25-39 (276)
21 PF12695 Abhydrolase_5: Alpha/ 31.0 32 0.00069 23.3 1.5 12 43-54 1-12 (145)
22 KOG4409 Predicted hydrolase/ac 28.0 33 0.00072 30.2 1.4 17 39-55 88-104 (365)
23 TIGR01250 pro_imino_pep_2 prol 27.6 47 0.001 24.4 2.0 16 40-55 24-39 (288)
24 TIGR03611 RutD pyrimidine util 26.2 49 0.0011 24.0 1.9 15 40-54 12-26 (257)
25 cd04709 BAH_MTA BAH, or Bromo 26.1 52 0.0011 25.5 2.1 22 104-126 124-145 (164)
26 COG3545 Predicted esterase of 26.0 47 0.001 26.6 1.8 14 41-54 2-15 (181)
27 PRK03592 haloalkane dehalogena 25.3 51 0.0011 25.7 1.9 15 40-54 26-40 (295)
28 PF12697 Abhydrolase_6: Alpha/ 25.2 48 0.001 23.1 1.6 11 44-54 1-11 (228)
29 PLN02606 palmitoyl-protein thi 25.2 1E+02 0.0023 26.4 3.9 13 39-51 24-36 (306)
30 PF08414 NADPH_Ox: Respiratory 25.0 31 0.00068 25.2 0.6 18 9-26 3-20 (100)
31 TIGR02973 nitrate_rd_NapE peri 24.5 46 0.001 20.7 1.2 16 15-30 1-16 (42)
32 TIGR03343 biphenyl_bphD 2-hydr 24.0 59 0.0013 24.7 2.0 15 40-54 29-43 (282)
33 PF11153 DUF2931: Protein of u 23.9 74 0.0016 24.9 2.6 18 19-36 1-18 (216)
34 PF10049 DUF2283: Protein of u 23.0 50 0.0011 20.4 1.2 11 105-115 1-11 (50)
35 TIGR03056 bchO_mg_che_rel puta 22.2 65 0.0014 24.1 1.9 15 41-55 28-42 (278)
36 PLN02578 hydrolase 21.2 70 0.0015 26.3 2.0 13 42-54 87-99 (354)
37 COG1075 LipA Predicted acetylt 20.7 1.1E+02 0.0024 25.6 3.2 15 40-54 58-72 (336)
38 KOG2541 Palmitoyl protein thio 20.2 1.2E+02 0.0027 26.0 3.3 19 38-56 20-38 (296)
39 KOG3724 Negative regulator of 20.2 56 0.0012 32.1 1.4 18 40-57 88-105 (973)
No 1
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=99.60 E-value=1.1e-15 Score=134.10 Aligned_cols=79 Identities=46% Similarity=0.869 Sum_probs=71.2
Q ss_pred cccEEEecCCCCCccEEEeCCCCCCCc---cccccccccccCCCCcee--eecccCCCCCCCcCccccceeEEEcCCCCC
Q 036994 41 LHPLILVPGNGGNQLEARLTSDYKPSS---LLCNRWYPIVKDSEGWFR--LWFDPSVLLPPFTKCFADRMMLYYDPDLDD 115 (129)
Q Consensus 41 ~~PVILVPG~gGSqLeAkL~~~~~p~~---~~C~~~yc~~k~~~~wFr--LWln~~~liP~~~~C~~D~m~L~YD~~T~~ 115 (129)
..||+||||++|+||+++++. +|.+ |.|. +.++++|| ||.+...+++...+||.|++.|+||++|+.
T Consensus 30 ~~pv~lv~g~gg~~l~~v~~~--~p~vv~~W~~~------~~a~~~FrkrLW~~~~~l~~~~~~cw~~~~~lvld~~tGL 101 (473)
T KOG2369|consen 30 DRPVLLVPGDGGSQLHPVLDG--KPGVVRLWVCI------KCAEGYFRKRLWLDLNMLLPKTIDCWCDNEHLVLDPETGL 101 (473)
T ss_pred CCceEEecCCccccccceecC--CCCEEEEEEee------cCchHHHhHHHhhhccccccccccccccceEEeecCccCC
Confidence 349999999999999999995 3654 5565 56789999 999999999999999999999999999998
Q ss_pred ccCCCCcEEeCCCC
Q 036994 116 FHNSPGVETRVPHF 129 (129)
Q Consensus 116 ~~N~pGV~Irvp~F 129 (129)
+ +|||.+|||||
T Consensus 102 d--~pg~~lRvpgf 113 (473)
T KOG2369|consen 102 D--PPGVKLRVPGF 113 (473)
T ss_pred C--CCcceeecCCc
Confidence 7 99999999998
No 2
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=99.56 E-value=1.8e-15 Score=131.29 Aligned_cols=68 Identities=29% Similarity=0.430 Sum_probs=55.1
Q ss_pred CCcccEEEecCCCCCccEEEeCCCCCCCccccccccccccCCCCceeeecccCCCCCCCcCccccceeEEEcCCCCCccC
Q 036994 39 RGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHN 118 (129)
Q Consensus 39 ~~~~PVILVPG~gGSqLeAkL~~~~~p~~~~C~~~yc~~k~~~~wFrLWln~~~liP~~~~C~~D~m~L~YD~~T~~~~N 118 (129)
..++|||||||++||+|+|+.++ . .+++++|+++.... .|+.++|.++||++|++++|
T Consensus 17 ~~~~PViLvPG~~gS~L~a~~~~--~----------------~~~~~~W~~l~~~~----~~~~~~l~~~yd~~t~~~~~ 74 (440)
T PLN02733 17 PDLDPVLLVPGIGGSILNAVDKD--G----------------GNEERVWVRIFAAD----HEFRKKLWSRYDPKTGKTVS 74 (440)
T ss_pred CCCCcEEEeCCCCcceeEEeecC--C----------------CCccceeEEchhcC----HHHHHHhhheeCcccCceec
Confidence 46999999999999999999642 1 12346666665443 47788888999999999999
Q ss_pred C-CCcEEeCCC
Q 036994 119 S-PGVETRVPH 128 (129)
Q Consensus 119 ~-pGV~Irvp~ 128 (129)
. |||+||||+
T Consensus 75 ~~~gv~i~vp~ 85 (440)
T PLN02733 75 LDPKTEIVVPD 85 (440)
T ss_pred CCCCceEEcCC
Confidence 9 799999996
No 3
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=99.22 E-value=7.5e-12 Score=106.14 Aligned_cols=47 Identities=45% Similarity=0.953 Sum_probs=45.9
Q ss_pred ceeeecccCCCCCCCcCccccceeEEEcCCCCCccCCCCcEEeCCCC
Q 036994 83 WFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHF 129 (129)
Q Consensus 83 wFrLWln~~~liP~~~~C~~D~m~L~YD~~T~~~~N~pGV~Irvp~F 129 (129)
+|+||+|++.++|+..+||+|+|+|+||++|++++|.|||+||+|||
T Consensus 1 ~~~~W~~~~~~~~~~~~c~~~~~~l~~d~~~~~~~~~~gv~i~~~~~ 47 (389)
T PF02450_consen 1 YFELWLNLELFIPRVWDCFFDNMRLVYDPKTWHYSNDPGVEIRVPGF 47 (389)
T ss_pred CccccCCCcccccccCCcccccceEEEcCCCCceecCCCceeecCCC
Confidence 68999999999999999999999999999999999999999999998
No 4
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=99.06 E-value=6.9e-11 Score=106.98 Aligned_cols=72 Identities=26% Similarity=0.400 Sum_probs=54.8
Q ss_pred CCcccEEEecCCCCCccEEEeCCCCCCCccccccccccccCCCCceeeecccCCCCCCC-cCccccceeEEEcCCCCCcc
Q 036994 39 RGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPF-TKCFADRMMLYYDPDLDDFH 117 (129)
Q Consensus 39 ~~~~PVILVPG~gGSqLeAkL~~~~~p~~~~C~~~yc~~k~~~~wFrLWln~~~liP~~-~~C~~D~m~L~YD~~T~~~~ 117 (129)
.++||||||||+..|+||..-+ ..|+ +. ..+.|||.+....+ .. -+||+|+|+| |++|+ .
T Consensus 72 ~~khPVVlVPGiiStgLE~W~~-------~~C~------~~-~frkRlWg~~~~~~-~~~~~CWld~m~L--D~~Tg--~ 132 (642)
T PLN02517 72 TAKHPVVFVPGIVTGGLELWEG-------HQCA------EG-LFRKRLWGGTFGEV-YKRPLCWVEHMSL--DNETG--L 132 (642)
T ss_pred CcCCCEEEeCchhhcchhhccC-------cccc------cc-hhhhccccchhhhe-ecCHHHHHHhcee--CCCCC--C
Confidence 3589999999999999996322 2365 32 45679999743322 23 4899999999 99985 5
Q ss_pred CCCCcEEe-CCCC
Q 036994 118 NSPGVETR-VPHF 129 (129)
Q Consensus 118 N~pGV~Ir-vp~F 129 (129)
|+|||+|| ++||
T Consensus 133 dppGVkIRa~~G~ 145 (642)
T PLN02517 133 DPPGIRVRAVSGL 145 (642)
T ss_pred CCCCeEEEecCCh
Confidence 99999999 8776
No 5
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=79.94 E-value=1.2 Score=35.45 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.5
Q ss_pred CcccEEEecCCCCCcc
Q 036994 40 GLHPLILVPGNGGNQL 55 (129)
Q Consensus 40 ~~~PVILVPG~gGSqL 55 (129)
...|||+|||.+||--
T Consensus 3 ~g~pVlFIhG~~Gs~~ 18 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYK 18 (225)
T ss_pred CCCEEEEECcCCCCHh
Confidence 4679999999999843
No 6
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=73.17 E-value=2.2 Score=27.23 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=16.8
Q ss_pred chhhhhhccchHHHHHHHHH
Q 036994 11 DKSEKRKEMKGLRFIVAMSL 30 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (129)
|+++||+|.|-+.||..++.
T Consensus 2 ~~~~k~~El~~flfl~v~l~ 21 (47)
T TIGR02972 2 DESKRSNELKALGFIIVVLF 21 (47)
T ss_pred CcchhHHHHHHHHHHHHHHH
Confidence 67899999999999877654
No 7
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=55.00 E-value=12 Score=24.59 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=16.3
Q ss_pred chhhhhhccchHHHHHHHHH
Q 036994 11 DKSEKRKEMKGLRFIVAMSL 30 (129)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (129)
++++||+|.+-++||..++.
T Consensus 10 ~~~~k~~E~~~flfl~~~l~ 29 (56)
T PF06796_consen 10 DKSTKRSELKAFLFLAVVLF 29 (56)
T ss_pred ccchhHHHHHHHHHHHHHHH
Confidence 37889999999998877654
No 8
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=45.07 E-value=14 Score=24.23 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=9.0
Q ss_pred CCCcccEEEecCCCCCc
Q 036994 38 SRGLHPLILVPGNGGNQ 54 (129)
Q Consensus 38 ~~~~~PVILVPG~gGSq 54 (129)
...+.||+|..|+++|.
T Consensus 40 ~~~k~pVll~HGL~~ss 56 (63)
T PF04083_consen 40 NKKKPPVLLQHGLLQSS 56 (63)
T ss_dssp TTT--EEEEE--TT--G
T ss_pred CCCCCcEEEECCcccCh
Confidence 35688999999999885
No 9
>PRK11372 lysozyme inhibitor; Provisional
Probab=38.70 E-value=23 Score=25.70 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=14.8
Q ss_pred ccchHHHHHHHHHHhhhcC
Q 036994 18 EMKGLRFIVAMSLFCTCQA 36 (129)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~ 36 (129)
.||+|+.+++.+++..|+.
T Consensus 2 ~mk~ll~~~~~~lL~gCs~ 20 (109)
T PRK11372 2 SMKKLLIICLPVLLTGCSA 20 (109)
T ss_pred chHHHHHHHHHHHHHHhcC
Confidence 5999988888888776654
No 10
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=38.36 E-value=22 Score=26.41 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=10.8
Q ss_pred ccEEEecCCCCCc
Q 036994 42 HPLILVPGNGGNQ 54 (129)
Q Consensus 42 ~PVILVPG~gGSq 54 (129)
.|||||+|.+||.
T Consensus 3 p~vvllHG~~~~~ 15 (242)
T PRK11126 3 PWLVFLHGLLGSG 15 (242)
T ss_pred CEEEEECCCCCCh
Confidence 4699999999873
No 11
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=37.50 E-value=16 Score=29.90 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=10.9
Q ss_pred CCcccEEEecCCCCCc
Q 036994 39 RGLHPLILVPGNGGNQ 54 (129)
Q Consensus 39 ~~~~PVILVPG~gGSq 54 (129)
....|+|+|||.+||.
T Consensus 9 ~~~tPTifihG~~gt~ 24 (255)
T PF06028_consen 9 QSTTPTIFIHGYGGTA 24 (255)
T ss_dssp -S-EEEEEE--TTGGC
T ss_pred cCCCcEEEECCCCCCh
Confidence 4578999999999996
No 12
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=36.21 E-value=30 Score=24.08 Aligned_cols=14 Identities=14% Similarity=0.532 Sum_probs=12.0
Q ss_pred ceeEEEcCCCCCcc
Q 036994 104 RMMLYYDPDLDDFH 117 (129)
Q Consensus 104 ~m~L~YD~~T~~~~ 117 (129)
.+|+.||++|++|.
T Consensus 29 ~~k~lfDPETGqYV 42 (75)
T PF15232_consen 29 KTKTLFDPETGQYV 42 (75)
T ss_pred ceeeeecCCCCcEE
Confidence 47899999999983
No 13
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=35.82 E-value=24 Score=25.06 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=11.2
Q ss_pred ccEEEecCCCCCcc
Q 036994 42 HPLILVPGNGGNQL 55 (129)
Q Consensus 42 ~PVILVPG~gGSqL 55 (129)
.|||+++|.+|+.-
T Consensus 2 ~~vv~~hG~~~~~~ 15 (251)
T TIGR03695 2 PVLVFLHGFLGSGA 15 (251)
T ss_pred CEEEEEcCCCCchh
Confidence 57899999888753
No 14
>PRK10349 carboxylesterase BioH; Provisional
Probab=33.93 E-value=25 Score=26.68 Aligned_cols=13 Identities=38% Similarity=0.450 Sum_probs=10.8
Q ss_pred ccEEEecCCCCCc
Q 036994 42 HPLILVPGNGGNQ 54 (129)
Q Consensus 42 ~PVILVPG~gGSq 54 (129)
.|||||+|.+++.
T Consensus 14 ~~ivllHG~~~~~ 26 (256)
T PRK10349 14 VHLVLLHGWGLNA 26 (256)
T ss_pred CeEEEECCCCCCh
Confidence 3699999998875
No 15
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=33.85 E-value=25 Score=26.77 Aligned_cols=11 Identities=36% Similarity=0.872 Sum_probs=7.9
Q ss_pred EEEecCCCCCc
Q 036994 44 LILVPGNGGNQ 54 (129)
Q Consensus 44 VILVPG~gGSq 54 (129)
|++|||.+||.
T Consensus 1 v~IvhG~~~s~ 11 (171)
T PF06821_consen 1 VLIVHGYGGSP 11 (171)
T ss_dssp EEEE--TTSST
T ss_pred CEEeCCCCCCC
Confidence 78999999986
No 16
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=33.53 E-value=32 Score=24.56 Aligned_cols=14 Identities=36% Similarity=0.399 Sum_probs=11.7
Q ss_pred cccEEEecCCCCCc
Q 036994 41 LHPLILVPGNGGNQ 54 (129)
Q Consensus 41 ~~PVILVPG~gGSq 54 (129)
..|||+++|.+++.
T Consensus 4 ~~~iv~~HG~~~~~ 17 (245)
T TIGR01738 4 NVHLVLIHGWGMNA 17 (245)
T ss_pred CceEEEEcCCCCch
Confidence 46899999998875
No 17
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=32.75 E-value=27 Score=28.06 Aligned_cols=12 Identities=58% Similarity=1.207 Sum_probs=6.7
Q ss_pred ccEEEecCCCCC
Q 036994 42 HPLILVPGNGGN 53 (129)
Q Consensus 42 ~PVILVPG~gGS 53 (129)
.|||||.|.+++
T Consensus 2 ~PVVlVHG~~~~ 13 (219)
T PF01674_consen 2 RPVVLVHGTGGN 13 (219)
T ss_dssp --EEEE--TTTT
T ss_pred CCEEEECCCCcc
Confidence 699999999963
No 18
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=32.23 E-value=28 Score=25.92 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=11.2
Q ss_pred ccEEEecCCCCCcc
Q 036994 42 HPLILVPGNGGNQL 55 (129)
Q Consensus 42 ~PVILVPG~gGSqL 55 (129)
.||++|||.+|+..
T Consensus 1 ~~lf~~p~~gG~~~ 14 (229)
T PF00975_consen 1 RPLFCFPPAGGSAS 14 (229)
T ss_dssp -EEEEESSTTCSGG
T ss_pred CeEEEEcCCccCHH
Confidence 48999999999764
No 19
>PRK10673 acyl-CoA esterase; Provisional
Probab=31.33 E-value=38 Score=25.28 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.5
Q ss_pred CCcccEEEecCCCCCc
Q 036994 39 RGLHPLILVPGNGGNQ 54 (129)
Q Consensus 39 ~~~~PVILVPG~gGSq 54 (129)
....|||+|+|.+|+.
T Consensus 14 ~~~~~iv~lhG~~~~~ 29 (255)
T PRK10673 14 HNNSPIVLVHGLFGSL 29 (255)
T ss_pred CCCCCEEEECCCCCch
Confidence 4578999999998885
No 20
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=31.14 E-value=35 Score=26.40 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=12.4
Q ss_pred cccEEEecCCCCCcc
Q 036994 41 LHPLILVPGNGGNQL 55 (129)
Q Consensus 41 ~~PVILVPG~gGSqL 55 (129)
..||||++|.+++.-
T Consensus 25 ~~plvllHG~~~~~~ 39 (276)
T TIGR02240 25 LTPLLIFNGIGANLE 39 (276)
T ss_pred CCcEEEEeCCCcchH
Confidence 479999999998753
No 21
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=30.98 E-value=32 Score=23.29 Aligned_cols=12 Identities=33% Similarity=0.734 Sum_probs=10.2
Q ss_pred cEEEecCCCCCc
Q 036994 43 PLILVPGNGGNQ 54 (129)
Q Consensus 43 PVILVPG~gGSq 54 (129)
|||+++|.+++.
T Consensus 1 ~vv~~HG~~~~~ 12 (145)
T PF12695_consen 1 VVVLLHGWGGSR 12 (145)
T ss_dssp EEEEECTTTTTT
T ss_pred CEEEECCCCCCH
Confidence 689999999864
No 22
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=28.02 E-value=33 Score=30.21 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.7
Q ss_pred CCcccEEEecCCCCCcc
Q 036994 39 RGLHPLILVPGNGGNQL 55 (129)
Q Consensus 39 ~~~~PVILVPG~gGSqL 55 (129)
..+.|+|||+|.|+++-
T Consensus 88 ~~~~plVliHGyGAg~g 104 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAGLG 104 (365)
T ss_pred cCCCcEEEEeccchhHH
Confidence 56899999999998863
No 23
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=27.65 E-value=47 Score=24.42 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=12.5
Q ss_pred CcccEEEecCCCCCcc
Q 036994 40 GLHPLILVPGNGGNQL 55 (129)
Q Consensus 40 ~~~PVILVPG~gGSqL 55 (129)
...|||+++|.+|+.-
T Consensus 24 ~~~~vl~~hG~~g~~~ 39 (288)
T TIGR01250 24 EKIKLLLLHGGPGMSH 39 (288)
T ss_pred CCCeEEEEcCCCCccH
Confidence 3679999999877653
No 24
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=26.18 E-value=49 Score=24.00 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=12.3
Q ss_pred CcccEEEecCCCCCc
Q 036994 40 GLHPLILVPGNGGNQ 54 (129)
Q Consensus 40 ~~~PVILVPG~gGSq 54 (129)
...+||+++|.+|+.
T Consensus 12 ~~~~iv~lhG~~~~~ 26 (257)
T TIGR03611 12 DAPVVVLSSGLGGSG 26 (257)
T ss_pred CCCEEEEEcCCCcch
Confidence 356899999999985
No 25
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=26.09 E-value=52 Score=25.50 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=16.8
Q ss_pred ceeEEEcCCCCCccCCCCcEEeC
Q 036994 104 RMMLYYDPDLDDFHNSPGVETRV 126 (129)
Q Consensus 104 ~m~L~YD~~T~~~~N~pGV~Irv 126 (129)
...+.||+++++.-+..| +|||
T Consensus 124 f~~~~YDP~~k~l~~~~g-eirv 145 (164)
T cd04709 124 FYSLVYDPEQKTLLADQG-EIRV 145 (164)
T ss_pred EEEEEECCCCCeecccce-eEEe
Confidence 358899999998866655 6765
No 26
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=25.96 E-value=47 Score=26.61 Aligned_cols=14 Identities=36% Similarity=0.916 Sum_probs=11.7
Q ss_pred cccEEEecCCCCCc
Q 036994 41 LHPLILVPGNGGNQ 54 (129)
Q Consensus 41 ~~PVILVPG~gGSq 54 (129)
...||+|||.+||.
T Consensus 2 ~~~~lIVpG~~~Sg 15 (181)
T COG3545 2 MTDVLIVPGYGGSG 15 (181)
T ss_pred CceEEEecCCCCCC
Confidence 34689999999985
No 27
>PRK03592 haloalkane dehalogenase; Provisional
Probab=25.31 E-value=51 Score=25.67 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=12.3
Q ss_pred CcccEEEecCCCCCc
Q 036994 40 GLHPLILVPGNGGNQ 54 (129)
Q Consensus 40 ~~~PVILVPG~gGSq 54 (129)
...|||||+|.++|.
T Consensus 26 ~g~~vvllHG~~~~~ 40 (295)
T PRK03592 26 EGDPIVFLHGNPTSS 40 (295)
T ss_pred CCCEEEEECCCCCCH
Confidence 347999999998884
No 28
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=25.24 E-value=48 Score=23.07 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=9.0
Q ss_pred EEEecCCCCCc
Q 036994 44 LILVPGNGGNQ 54 (129)
Q Consensus 44 VILVPG~gGSq 54 (129)
||||+|.+++.
T Consensus 1 vv~~hG~~~~~ 11 (228)
T PF12697_consen 1 VVFLHGFGGSS 11 (228)
T ss_dssp EEEE-STTTTG
T ss_pred eEEECCCCCCH
Confidence 79999999988
No 29
>PLN02606 palmitoyl-protein thioesterase
Probab=25.15 E-value=1e+02 Score=26.39 Aligned_cols=13 Identities=31% Similarity=0.439 Sum_probs=11.3
Q ss_pred CCcccEEEecCCC
Q 036994 39 RGLHPLILVPGNG 51 (129)
Q Consensus 39 ~~~~PVILVPG~g 51 (129)
+.--|||+..|+|
T Consensus 24 ~~~~PvViwHGlg 36 (306)
T PLN02606 24 SLSVPFVLFHGFG 36 (306)
T ss_pred CCCCCEEEECCCC
Confidence 4568999999999
No 30
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=25.01 E-value=31 Score=25.17 Aligned_cols=18 Identities=50% Similarity=0.831 Sum_probs=12.8
Q ss_pred CcchhhhhhccchHHHHH
Q 036994 9 SRDKSEKRKEMKGLRFIV 26 (129)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~ 26 (129)
.|.+|-...-.|||+||-
T Consensus 3 dRt~S~A~~ALkGLrFIs 20 (100)
T PF08414_consen 3 DRTKSGAQRALKGLRFIS 20 (100)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHhccccee
Confidence 467787888899999984
No 31
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=24.55 E-value=46 Score=20.74 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=12.4
Q ss_pred hhhccchHHHHHHHHH
Q 036994 15 KRKEMKGLRFIVAMSL 30 (129)
Q Consensus 15 ~~~~~~~~~~~~~~~~ 30 (129)
||+|.+-+.||..++.
T Consensus 1 k~~El~~flfl~~~l~ 16 (42)
T TIGR02973 1 KRMELNTFLFLAAVIW 16 (42)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 6789998888876654
No 32
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=23.97 E-value=59 Score=24.75 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=12.0
Q ss_pred CcccEEEecCCCCCc
Q 036994 40 GLHPLILVPGNGGNQ 54 (129)
Q Consensus 40 ~~~PVILVPG~gGSq 54 (129)
...||||++|.+++.
T Consensus 29 ~~~~ivllHG~~~~~ 43 (282)
T TIGR03343 29 NGEAVIMLHGGGPGA 43 (282)
T ss_pred CCCeEEEECCCCCch
Confidence 457999999998764
No 33
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=23.91 E-value=74 Score=24.87 Aligned_cols=18 Identities=22% Similarity=0.552 Sum_probs=13.0
Q ss_pred cchHHHHHHHHHHhhhcC
Q 036994 19 MKGLRFIVAMSLFCTCQA 36 (129)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ 36 (129)
||=+.+|++++++.+|+.
T Consensus 1 mk~i~~l~l~lll~~C~~ 18 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGCST 18 (216)
T ss_pred ChHHHHHHHHHHHHhhcC
Confidence 677788877777777755
No 34
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=22.96 E-value=50 Score=20.41 Aligned_cols=11 Identities=45% Similarity=0.878 Sum_probs=8.8
Q ss_pred eeEEEcCCCCC
Q 036994 105 MMLYYDPDLDD 115 (129)
Q Consensus 105 m~L~YD~~T~~ 115 (129)
|++.||++++.
T Consensus 1 Mki~YD~~~D~ 11 (50)
T PF10049_consen 1 MKIEYDPEADA 11 (50)
T ss_pred CEeEEcCcCCE
Confidence 78889988764
No 35
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=22.17 E-value=65 Score=24.06 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.6
Q ss_pred cccEEEecCCCCCcc
Q 036994 41 LHPLILVPGNGGNQL 55 (129)
Q Consensus 41 ~~PVILVPG~gGSqL 55 (129)
..|||+++|.+|+..
T Consensus 28 ~~~vv~~hG~~~~~~ 42 (278)
T TIGR03056 28 GPLLLLLHGTGASTH 42 (278)
T ss_pred CCeEEEEcCCCCCHH
Confidence 579999999998763
No 36
>PLN02578 hydrolase
Probab=21.16 E-value=70 Score=26.26 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.4
Q ss_pred ccEEEecCCCCCc
Q 036994 42 HPLILVPGNGGNQ 54 (129)
Q Consensus 42 ~PVILVPG~gGSq 54 (129)
.|||||+|.+++.
T Consensus 87 ~~vvliHG~~~~~ 99 (354)
T PLN02578 87 LPIVLIHGFGASA 99 (354)
T ss_pred CeEEEECCCCCCH
Confidence 4999999999974
No 37
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=20.73 E-value=1.1e+02 Score=25.63 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=11.5
Q ss_pred CcccEEEecCCCCCc
Q 036994 40 GLHPLILVPGNGGNQ 54 (129)
Q Consensus 40 ~~~PVILVPG~gGSq 54 (129)
...|||+|||++++-
T Consensus 58 ~~~pivlVhG~~~~~ 72 (336)
T COG1075 58 AKEPIVLVHGLGGGY 72 (336)
T ss_pred CCceEEEEccCcCCc
Confidence 366999999986553
No 38
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=20.20 E-value=1.2e+02 Score=26.02 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=14.4
Q ss_pred CCCcccEEEecCCCCCccE
Q 036994 38 SRGLHPLILVPGNGGNQLE 56 (129)
Q Consensus 38 ~~~~~PVILVPG~gGSqLe 56 (129)
+.+-.|+|++.|++.+-=.
T Consensus 20 s~s~~P~ii~HGigd~c~~ 38 (296)
T KOG2541|consen 20 SPSPVPVIVWHGIGDSCSS 38 (296)
T ss_pred CcccCCEEEEeccCccccc
Confidence 3444899999999977644
No 39
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.15 E-value=56 Score=32.05 Aligned_cols=18 Identities=28% Similarity=0.650 Sum_probs=13.9
Q ss_pred CcccEEEecCCCCCccEE
Q 036994 40 GLHPLILVPGNGGNQLEA 57 (129)
Q Consensus 40 ~~~PVILVPG~gGSqLeA 57 (129)
+.=||.+|||..||-=++
T Consensus 88 sGIPVLFIPGNAGSyKQv 105 (973)
T KOG3724|consen 88 SGIPVLFIPGNAGSYKQV 105 (973)
T ss_pred CCceEEEecCCCCchHHH
Confidence 345999999999995433
Done!