BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036996
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 118/194 (60%), Gaps = 8/194 (4%)
Query: 25 SFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCI 84
F K ++D++A+Y + IE V VEPGYL +P AP P++ +DI+ DV I
Sbjct: 5 EFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKII 64
Query: 85 LPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGK 144
+PG+THW SP FF YF +S L +MLC +GF+W ASP TELE+++MDW+GK
Sbjct: 65 MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGK 124
Query: 145 MLKLPSSFL--FSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNIT------KLA 196
ML+LP +FL +G GGGV+ GS E+ + L AAR K + +L +T KL
Sbjct: 125 MLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLV 184
Query: 197 VYASDQTHFALQKS 210
Y+SDQ H +++++
Sbjct: 185 AYSSDQAHSSVERA 198
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 118/194 (60%), Gaps = 8/194 (4%)
Query: 25 SFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCI 84
F K ++D++A+Y + IE V VEPGYL +P AP P++ +DI+ DV I
Sbjct: 5 EFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKII 64
Query: 85 LPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGK 144
+PG+THW SP FF YF +S L +MLC +GF+W ASP TELE+++MDW+GK
Sbjct: 65 MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGK 124
Query: 145 MLKLPSSFL--FSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNIT------KLA 196
ML+LP +FL +G GGGV+ GS E+ + L AAR K + +L +T KL
Sbjct: 125 MLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLV 184
Query: 197 VYASDQTHFALQKS 210
Y+SDQ H +++++
Sbjct: 185 AYSSDQAHSSVERA 198
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 120/193 (62%), Gaps = 8/193 (4%)
Query: 26 FSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCIL 85
F K ++D++ADY + IE V V+PGYL +P TAP P++ +DIL+DV I+
Sbjct: 6 FRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIM 65
Query: 86 PGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKM 145
PG+THW SP FF YF +S L +MLC +GF+W ASP TELE+++MDW+GKM
Sbjct: 66 PGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKM 125
Query: 146 LKLPSSFL--FSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNIT------KLAV 197
L+LP +FL +G GGGV+ GS E+ + L AAR K + +L +T KL
Sbjct: 126 LQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVA 185
Query: 198 YASDQTHFALQKS 210
YASDQ H +++++
Sbjct: 186 YASDQAHSSVERA 198
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 114/199 (57%), Gaps = 9/199 (4%)
Query: 21 LEPKSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDV 80
+EP+ + + + ++D+I Y + + V V+PGYL A+LP++AP P+S D I D+
Sbjct: 6 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDI 65
Query: 81 TDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMD 140
I+PG+ HWQSP+ Y+ A S LG+ML N +GF W +SP TELE VMD
Sbjct: 66 ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMD 125
Query: 141 WMGKMLKLPSSFLF---SGTGGGVLHGSTCES-LVCTLAAARDKALEKLGGGFDN----- 191
W+ KML LP FL S GGGVL + ES L+ LAA ++K LE D
Sbjct: 126 WLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSL 185
Query: 192 ITKLAVYASDQTHFALQKS 210
+L YASDQ H +++K+
Sbjct: 186 NARLVAYASDQAHSSVEKA 204
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 119/201 (59%), Gaps = 8/201 (3%)
Query: 21 LEPKSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDV 80
+E F D +K ++DFIA+Y +NI + V +V+PGYL +PD AP PE D+++D+
Sbjct: 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60
Query: 81 TDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMD 140
I+PG+THW SP F YF S + +ML +GF W+ASP TELE ++MD
Sbjct: 61 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMD 120
Query: 141 WMGKMLKLPSSFLFSG--TGGGVLHGSTCESLVCTLAAARDKAL---EKLGGGFDNIT-- 193
W+GKML+LP+ FL GGGV+ G+ ES + L A+ K L ++L +D T
Sbjct: 121 WLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTIL 180
Query: 194 -KLAVYASDQTHFALQKSAKL 213
KL Y SDQ H +++++ L
Sbjct: 181 GKLVGYCSDQAHSSVERAGLL 201
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 70 PESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASP 129
PESL+ IL D D + G+ P FF G GE L S N F + +P
Sbjct: 73 PESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAP 131
Query: 130 VATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLG-GG 188
V +E I + M +++ S G G+ S + ++ AAR K ++ G
Sbjct: 132 VFVLMEQITLKKMREIVGWSSK-----DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKG 186
Query: 189 FDNITKLAVYASDQTHFALQKS 210
+ KL ++ S+Q+H++++K+
Sbjct: 187 MAAVPKLVLFTSEQSHYSIKKA 208
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 70 PESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASP 129
PESL+ IL D D + G+ P FF G GE L S N F + +P
Sbjct: 70 PESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAP 128
Query: 130 VATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLG-GG 188
V +E I + M +++ S G G+ S + ++ AAR K ++ G
Sbjct: 129 VFVLMEQITLKKMREIVGWSSK-----DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKG 183
Query: 189 FDNITKLAVYASDQTHFALQKS 210
+ KL ++ S+Q+H++++K+
Sbjct: 184 MAAVPKLVLFTSEQSHYSIKKA 205
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 13/146 (8%)
Query: 73 LDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVAT 132
L ++ DV + + Q P+ + E + N +W + AT
Sbjct: 80 LKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLXPAVAAEAXIAALNQSXDSWDQASSAT 139
Query: 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGF--- 189
+E V++W L + S G+ +S L ARD +KL G
Sbjct: 140 YVEQKVVNW------LCDKYDLSEKADGIFTSGGTQSNQXGLXLARDWIADKLSGHSIQK 193
Query: 190 ----DNITKLAVYASDQTHFALQKSA 211
D KL + S ++HF +QKSA
Sbjct: 194 LGLPDYADKLRIVCSKKSHFTVQKSA 219
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 6/121 (4%)
Query: 94 PNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFL 153
P FF + G ++ N + + +PV +E V+ KL +
Sbjct: 109 PRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLR------KLRALVG 162
Query: 154 FSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213
+S G G + ++ A + + G + LA++ S + H+++QK A
Sbjct: 163 WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAF 222
Query: 214 I 214
+
Sbjct: 223 L 223
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 159 GGVL--HGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYAS----DQTHFALQKSAK 212
GG+L H T + L A L G + K+++YAS +QTH+ALQ S K
Sbjct: 246 GGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLK 305
Query: 213 LI 214
L+
Sbjct: 306 LL 307
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 159 GGVL--HGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYAS----DQTHFALQKSAK 212
GG+L H T + L A L G + K+++YAS +QTH+ALQ S K
Sbjct: 246 GGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLK 305
Query: 213 LI 214
L+
Sbjct: 306 LL 307
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 30 SKAVIDFIADYYKNIEKYPVQSKVEPGYLSARL 62
S+ ++ + D+ K + K+PV K PG++ RL
Sbjct: 178 SQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRL 210
>pdb|1LTL|A Chain A, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|B Chain B, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|C Chain C, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|D Chain D, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|E Chain E, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|F Chain F, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
Length = 279
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 28 DESKAVIDF-----IADY----YKNIEKYPVQSKVEPGYLSARL--PDTAPHSPESLDDI 76
D+SK + F + DY ++ IEKYP +E YL + PD A E DD+
Sbjct: 10 DKSKTLTKFEEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDV 69
Query: 77 LK 78
++
Sbjct: 70 IR 71
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 30 SKAVIDFIADYYKNIEKYPVQSKVEPGYLSARL 62
S+ + + D+ K + K+PV K PG++ +RL
Sbjct: 178 SQKTFESLVDFSKALGKHPVSCKDTPGFIVSRL 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,665,458
Number of Sequences: 62578
Number of extensions: 278541
Number of successful extensions: 723
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 19
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)