Query 036996
Match_columns 214
No_of_seqs 142 out of 1383
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:31:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02590 probable tyrosine dec 100.0 2.8E-44 6.1E-49 331.2 22.3 195 18-214 51-249 (539)
2 PLN02880 tyrosine decarboxylas 100.0 5.6E-43 1.2E-47 320.9 22.4 197 16-214 5-201 (490)
3 KOG0628 Aromatic-L-amino-acid/ 100.0 1.4E-41 3.1E-46 299.4 17.4 193 21-213 1-201 (511)
4 PF00282 Pyridoxal_deC: Pyrido 100.0 2.1E-37 4.5E-42 275.6 10.6 160 55-214 1-161 (373)
5 TIGR03811 tyr_de_CO2_Ent tyros 100.0 7E-33 1.5E-37 258.2 20.4 192 12-214 3-242 (608)
6 TIGR03799 NOD_PanD_pyr putativ 100.0 2.8E-32 6.1E-37 251.5 18.1 193 16-214 13-229 (522)
7 KOG0629 Glutamate decarboxylas 100.0 9E-33 2E-37 241.8 12.4 186 22-214 29-217 (510)
8 COG0076 GadB Glutamate decarbo 99.9 8.6E-26 1.9E-30 205.5 16.9 173 36-214 3-177 (460)
9 PLN02263 serine decarboxylase 99.9 4.4E-24 9.4E-29 193.7 12.3 120 73-214 75-198 (470)
10 TIGR01788 Glu-decarb-GAD gluta 99.9 1.1E-21 2.3E-26 177.7 14.6 142 63-214 14-158 (431)
11 PLN03032 serine decarboxylase; 99.7 3.6E-17 7.8E-22 145.7 11.1 121 73-214 8-131 (374)
12 PRK02769 histidine decarboxyla 99.7 7.6E-17 1.7E-21 144.1 11.1 118 74-214 8-130 (380)
13 cd06450 DOPA_deC_like DOPA dec 99.6 6.2E-15 1.3E-19 128.6 11.7 112 96-213 1-114 (345)
14 KOG1383 Glutamate decarboxylas 99.3 5.5E-11 1.2E-15 106.3 12.4 137 61-213 51-189 (491)
15 PRK13520 L-tyrosine decarboxyl 98.9 9E-09 2E-13 90.6 11.0 122 71-213 2-123 (371)
16 PRK00451 glycine dehydrogenase 98.9 2.4E-08 5.2E-13 90.8 12.0 135 55-212 32-172 (447)
17 TIGR03812 tyr_de_CO2_Arch tyro 98.8 8.9E-08 1.9E-12 84.4 13.2 124 73-213 2-125 (373)
18 PRK05367 glycine dehydrogenase 98.3 6.7E-06 1.5E-10 81.4 13.2 127 71-213 478-609 (954)
19 TIGR00461 gcvP glycine dehydro 98.3 4.8E-06 1E-10 81.7 12.0 124 72-213 467-597 (939)
20 TIGR03531 selenium_SpcS O-phos 98.1 1.4E-05 3E-10 73.1 7.9 123 64-214 28-171 (444)
21 PRK04366 glycine dehydrogenase 97.8 0.0006 1.3E-08 63.0 13.7 142 55-213 35-180 (481)
22 PLN02651 cysteine desulfurase 96.8 0.0096 2.1E-07 52.6 9.2 69 128-212 38-106 (364)
23 COG1104 NifS Cysteine sulfinat 96.4 0.027 5.9E-07 50.6 9.3 104 96-214 4-111 (386)
24 TIGR03402 FeS_nifS cysteine de 96.3 0.033 7.1E-07 49.3 9.9 67 128-211 37-103 (379)
25 PRK02948 cysteine desulfurase; 96.2 0.027 5.9E-07 49.9 8.8 73 124-212 34-106 (381)
26 TIGR03235 DNA_S_dndA cysteine 96.0 0.063 1.4E-06 47.0 9.7 69 128-211 37-105 (353)
27 TIGR02006 IscS cysteine desulf 95.8 0.06 1.3E-06 48.3 9.1 65 132-212 46-110 (402)
28 PRK14012 cysteine desulfurase; 95.7 0.094 2E-06 47.0 9.7 60 137-212 53-112 (404)
29 cd00609 AAT_like Aspartate ami 95.0 0.21 4.5E-06 42.8 9.5 80 116-213 23-102 (350)
30 cd06453 SufS_like Cysteine des 94.6 0.23 4.9E-06 43.7 8.7 69 124-208 34-102 (373)
31 cd00613 GDC-P Glycine cleavage 94.5 0.52 1.1E-05 41.8 11.0 121 75-213 3-127 (398)
32 KOG1549 Cysteine desulfurase N 94.4 0.16 3.4E-06 46.2 7.4 105 90-213 40-150 (428)
33 PRK07179 hypothetical protein; 92.8 0.65 1.4E-05 41.6 8.6 96 90-212 58-156 (407)
34 PF01276 OKR_DC_1: Orn/Lys/Arg 92.5 0.51 1.1E-05 43.0 7.5 111 77-213 4-125 (417)
35 cd06451 AGAT_like Alanine-glyo 91.9 0.99 2.2E-05 39.3 8.4 44 127-176 26-69 (356)
36 PRK12566 glycine dehydrogenase 91.7 1.4 3.1E-05 44.1 9.9 123 69-207 477-604 (954)
37 PF01212 Beta_elim_lyase: Beta 91.4 0.96 2.1E-05 39.2 7.7 59 124-208 24-82 (290)
38 cd01494 AAT_I Aspartate aminot 91.2 0.51 1.1E-05 35.7 5.2 52 137-208 4-55 (170)
39 PRK09331 Sep-tRNA:Cys-tRNA syn 90.3 1.2 2.6E-05 39.8 7.4 55 137-213 67-121 (387)
40 cd00615 Orn_deC_like Ornithine 90.2 1.8 3.8E-05 37.1 8.2 55 138-213 64-118 (294)
41 cd00610 OAT_like Acetyl ornith 90.1 1.3 2.9E-05 39.3 7.6 42 132-180 78-119 (413)
42 TIGR01979 sufS cysteine desulf 90.1 2 4.2E-05 38.2 8.6 66 128-208 57-122 (403)
43 COG2008 GLY1 Threonine aldolas 89.9 0.87 1.9E-05 40.3 6.0 75 108-208 11-88 (342)
44 PRK03715 argD acetylornithine 89.6 1.8 3.8E-05 39.0 8.0 41 132-181 77-117 (395)
45 cd06502 TA_like Low-specificit 88.1 0.55 1.2E-05 40.5 3.6 52 136-209 35-86 (338)
46 TIGR03246 arg_catab_astC succi 88.0 2.9 6.3E-05 37.5 8.3 23 160-182 95-117 (397)
47 PRK00854 rocD ornithine--oxo-a 87.2 4.6 9.9E-05 36.0 9.1 41 128-181 82-122 (401)
48 KOG1368 Threonine aldolase [Am 86.7 0.84 1.8E-05 39.9 3.8 44 123-179 50-93 (384)
49 PRK12403 putative aminotransfe 86.4 4.1 8.9E-05 37.5 8.4 42 133-181 98-139 (460)
50 PF02347 GDC-P: Glycine cleava 85.8 15 0.00033 33.7 11.5 136 55-211 32-171 (429)
51 COG0001 HemL Glutamate-1-semia 85.6 2 4.4E-05 39.3 5.8 43 131-181 91-133 (432)
52 PRK15029 arginine decarboxylas 85.5 6.3 0.00014 38.8 9.5 54 139-213 211-264 (755)
53 PRK09082 methionine aminotrans 85.5 7.2 0.00016 34.6 9.4 84 112-212 50-133 (386)
54 PRK05093 argD bifunctional N-s 85.4 5.3 0.00011 35.8 8.5 58 137-207 86-143 (403)
55 PRK02936 argD acetylornithine 84.9 3.2 6.8E-05 36.6 6.7 40 132-180 70-109 (377)
56 PRK08361 aspartate aminotransf 84.9 7 0.00015 34.7 9.0 64 108-176 49-112 (391)
57 TIGR01977 am_tr_V_EF2568 cyste 84.5 7.2 0.00016 34.1 8.8 59 132-209 43-101 (376)
58 PLN02721 threonine aldolase 84.3 3.5 7.6E-05 35.6 6.7 60 125-209 36-95 (353)
59 PRK15399 lysine decarboxylase 84.3 6.8 0.00015 38.3 9.1 53 140-213 202-254 (713)
60 PRK01278 argD acetylornithine 84.3 7.6 0.00016 34.5 8.9 24 159-182 90-113 (389)
61 PRK06917 hypothetical protein; 84.0 5.9 0.00013 36.3 8.3 43 132-181 73-115 (447)
62 PRK07046 aminotransferase; Val 84.0 1.4 3E-05 40.6 4.1 41 132-181 114-154 (453)
63 cd06454 KBL_like KBL_like; thi 83.8 6.4 0.00014 33.9 8.1 55 136-212 49-103 (349)
64 cd06452 SepCysS Sep-tRNA:Cys-t 83.7 3.9 8.5E-05 35.9 6.8 61 127-213 42-102 (361)
65 TIGR01885 Orn_aminotrans ornit 83.3 6.2 0.00013 35.2 8.0 39 136-183 82-120 (401)
66 PRK06108 aspartate aminotransf 83.2 9.4 0.0002 33.5 9.0 64 109-177 41-104 (382)
67 PLN02414 glycine dehydrogenase 82.8 24 0.00052 35.9 12.5 129 63-211 75-209 (993)
68 PRK05965 hypothetical protein; 82.0 3.8 8.3E-05 37.7 6.2 42 133-181 90-131 (459)
69 TIGR03403 nifS_epsilon cystein 82.0 15 0.00032 32.4 9.8 66 132-212 42-108 (382)
70 PRK12566 glycine dehydrogenase 81.9 34 0.00074 34.6 13.0 131 55-209 46-183 (954)
71 TIGR00461 gcvP glycine dehydro 81.8 19 0.00042 36.3 11.3 128 55-208 31-167 (939)
72 cd00611 PSAT_like Phosphoserin 81.7 7.6 0.00016 34.2 7.8 67 102-174 6-80 (355)
73 PRK04260 acetylornithine amino 81.4 6.7 0.00014 34.7 7.4 39 132-180 69-107 (375)
74 PRK02627 acetylornithine amino 81.3 7.4 0.00016 34.4 7.7 41 132-181 80-120 (396)
75 PRK03244 argD acetylornithine 81.1 4.7 0.0001 35.9 6.3 38 136-179 88-125 (398)
76 PRK07481 hypothetical protein; 81.0 4.5 9.7E-05 37.1 6.3 43 133-181 86-128 (449)
77 PRK15400 lysine decarboxylase 80.7 11 0.00023 37.0 8.9 54 139-213 201-254 (714)
78 PRK04073 rocD ornithine--oxo-a 80.6 10 0.00022 33.9 8.3 38 136-182 85-122 (396)
79 PLN02624 ornithine-delta-amino 80.4 11 0.00023 34.9 8.6 39 135-182 119-157 (474)
80 TIGR02539 SepCysS Sep-tRNA:Cys 80.4 13 0.00027 32.9 8.8 55 137-213 55-109 (370)
81 PRK09295 bifunctional cysteine 80.3 8.5 0.00018 34.3 7.7 96 95-207 25-126 (406)
82 TIGR03576 pyridox_MJ0158 pyrid 79.6 8.6 0.00019 34.0 7.4 63 132-213 53-117 (346)
83 PRK13578 ornithine decarboxyla 79.5 9.3 0.0002 37.4 8.1 50 140-210 181-230 (720)
84 PRK07480 putative aminotransfe 79.0 5.6 0.00012 36.6 6.3 42 133-181 94-135 (456)
85 PTZ00433 tyrosine aminotransfe 78.7 22 0.00048 31.9 9.9 72 106-177 51-124 (412)
86 PRK07036 hypothetical protein; 78.1 6.2 0.00013 36.4 6.3 43 132-181 94-136 (466)
87 PLN02760 4-aminobutyrate:pyruv 77.9 15 0.00033 34.3 8.8 43 133-181 133-175 (504)
88 PRK06105 aminotransferase; Pro 77.2 14 0.00031 34.0 8.3 43 132-181 91-133 (460)
89 PRK05958 8-amino-7-oxononanoat 77.2 14 0.00031 32.2 8.1 58 134-213 85-142 (385)
90 PRK05764 aspartate aminotransf 76.8 18 0.00038 32.0 8.7 64 109-177 48-111 (393)
91 TIGR00699 GABAtrns_euk 4-amino 76.6 13 0.00027 34.5 7.8 47 128-181 100-146 (464)
92 PRK07678 aminotransferase; Val 76.4 4.6 0.0001 37.0 4.9 40 134-181 90-129 (451)
93 PTZ00125 ornithine aminotransf 76.2 13 0.00027 33.0 7.6 48 160-209 91-138 (400)
94 cd00378 SHMT Serine-glycine hy 76.2 11 0.00025 33.3 7.3 43 127-177 59-101 (402)
95 PRK06916 adenosylmethionine--8 76.1 19 0.00041 33.2 8.8 43 132-181 98-140 (460)
96 PRK12381 bifunctional succinyl 76.1 15 0.00032 33.0 8.0 23 159-181 98-120 (406)
97 PRK09792 4-aminobutyrate trans 76.0 8 0.00017 35.1 6.3 42 133-180 83-124 (421)
98 PRK08360 4-aminobutyrate amino 75.9 9.5 0.00021 34.9 6.8 41 134-181 85-125 (443)
99 PRK07482 hypothetical protein; 75.6 15 0.00033 33.8 8.1 43 132-181 93-135 (461)
100 PRK06943 adenosylmethionine--8 74.8 19 0.0004 33.2 8.4 43 133-182 97-139 (453)
101 PRK07030 adenosylmethionine--8 74.8 19 0.0004 33.3 8.5 43 132-181 89-131 (466)
102 cd00616 AHBA_syn 3-amino-5-hyd 74.6 9.6 0.00021 32.9 6.3 62 126-212 15-76 (352)
103 PRK06918 4-aminobutyrate amino 74.4 12 0.00026 34.2 7.1 43 133-181 97-139 (451)
104 PRK13393 5-aminolevulinate syn 74.4 13 0.00029 33.2 7.3 98 89-212 48-149 (406)
105 TIGR03392 FeS_syn_CsdA cystein 73.9 23 0.00049 31.4 8.6 97 95-207 18-119 (398)
106 PF00266 Aminotran_5: Aminotra 73.7 25 0.00055 30.8 8.8 70 125-210 35-104 (371)
107 PRK04013 argD acetylornithine/ 73.4 17 0.00038 32.4 7.7 40 128-180 65-104 (364)
108 PRK10874 cysteine sulfinate de 73.2 18 0.0004 32.0 7.9 96 95-207 21-122 (401)
109 TIGR01976 am_tr_V_VC1184 cyste 73.1 26 0.00057 30.9 8.8 62 130-208 57-118 (397)
110 PLN02482 glutamate-1-semialdeh 73.1 5.9 0.00013 36.8 4.7 42 132-181 138-179 (474)
111 PRK07505 hypothetical protein; 72.9 20 0.00044 31.9 8.1 61 131-208 89-149 (402)
112 PRK05769 4-aminobutyrate amino 72.4 11 0.00024 34.4 6.3 43 132-180 96-138 (441)
113 PRK06058 4-aminobutyrate amino 72.1 11 0.00024 34.4 6.3 42 133-180 99-140 (443)
114 PRK00062 glutamate-1-semialdeh 72.1 11 0.00023 34.2 6.2 40 133-180 90-129 (426)
115 PRK08117 4-aminobutyrate amino 72.1 15 0.00033 33.3 7.1 40 134-180 87-126 (433)
116 PRK07683 aminotransferase A; V 71.8 18 0.0004 32.0 7.5 63 110-176 46-108 (387)
117 PRK00615 glutamate-1-semialdeh 71.6 7 0.00015 35.7 4.8 42 133-181 93-134 (433)
118 PRK05639 4-aminobutyrate amino 71.6 17 0.00036 33.5 7.3 40 134-180 97-136 (457)
119 KOG1401 Acetylornithine aminot 71.4 6.2 0.00014 35.8 4.3 50 125-185 95-144 (433)
120 PRK13392 5-aminolevulinate syn 71.3 18 0.00038 32.4 7.3 56 137-212 95-150 (410)
121 TIGR01821 5aminolev_synth 5-am 71.1 18 0.00039 32.2 7.3 56 137-212 94-149 (402)
122 PRK04612 argD acetylornithine 71.0 19 0.00041 32.6 7.5 41 133-181 82-122 (408)
123 PRK08297 L-lysine aminotransfe 70.5 7.9 0.00017 35.4 4.9 40 136-181 95-134 (443)
124 COG1003 GcvP Glycine cleavage 70.2 15 0.00033 33.9 6.4 72 127-211 103-174 (496)
125 PLN02656 tyrosine transaminase 70.1 77 0.0017 28.3 11.2 65 107-176 50-115 (409)
126 PRK05630 adenosylmethionine--8 69.8 28 0.00061 31.6 8.3 41 134-181 84-124 (422)
127 PRK07483 hypothetical protein; 69.7 18 0.00039 33.1 7.1 41 134-181 74-114 (443)
128 PLN02822 serine palmitoyltrans 69.4 73 0.0016 29.5 11.1 18 196-213 195-212 (481)
129 PRK06082 4-aminobutyrate amino 69.3 14 0.00029 34.1 6.2 42 132-180 112-153 (459)
130 TIGR03301 PhnW-AepZ 2-aminoeth 69.1 23 0.00049 30.5 7.3 66 101-177 5-70 (355)
131 PRK05964 adenosylmethionine--8 68.8 21 0.00045 32.3 7.3 42 133-181 85-126 (423)
132 TIGR03372 putres_am_tran putre 68.7 9.2 0.0002 35.1 5.0 42 133-181 117-158 (442)
133 PRK08593 4-aminobutyrate amino 68.7 15 0.00032 33.7 6.3 43 133-181 85-127 (445)
134 PRK07986 adenosylmethionine--8 68.5 34 0.00075 31.2 8.6 42 133-181 86-127 (428)
135 PRK06777 4-aminobutyrate amino 68.2 20 0.00043 32.5 7.0 41 135-181 85-125 (421)
136 TIGR01825 gly_Cac_T_rel pyrido 68.0 27 0.00059 30.6 7.7 61 130-212 75-135 (385)
137 COG0403 GcvP Glycine cleavage 67.9 67 0.0014 29.6 10.0 123 69-211 55-181 (450)
138 TIGR00709 dat 2,4-diaminobutyr 67.2 36 0.00078 31.1 8.5 44 132-180 81-125 (442)
139 PRK12389 glutamate-1-semialdeh 67.0 9.7 0.00021 34.6 4.7 41 133-181 93-133 (428)
140 TIGR00707 argD acetylornithine 66.4 36 0.00077 29.7 8.1 40 133-181 69-108 (379)
141 PRK13360 omega amino acid--pyr 66.3 23 0.00051 32.4 7.1 42 133-181 89-130 (442)
142 PF00202 Aminotran_3: Aminotra 66.2 16 0.00034 32.1 5.8 41 133-180 59-99 (339)
143 PTZ00094 serine hydroxymethylt 66.2 14 0.0003 33.8 5.6 45 129-177 76-120 (452)
144 PRK06209 glutamate-1-semialdeh 66.0 12 0.00025 34.1 5.1 41 133-181 88-128 (431)
145 PRK07777 aminotransferase; Val 65.9 61 0.0013 28.6 9.6 47 125-175 57-103 (387)
146 PLN02855 Bifunctional selenocy 65.8 45 0.00097 29.9 8.8 99 94-208 33-136 (424)
147 KOG1404 Alanine-glyoxylate ami 65.5 5.4 0.00012 36.2 2.6 23 159-181 111-133 (442)
148 PLN00144 acetylornithine trans 65.5 14 0.0003 33.0 5.4 39 134-181 58-96 (382)
149 PRK11522 putrescine--2-oxoglut 65.2 12 0.00026 34.6 5.0 42 133-181 124-165 (459)
150 PRK09064 5-aminolevulinate syn 65.2 34 0.00074 30.4 7.9 61 128-212 90-150 (407)
151 TIGR00700 GABAtrnsam 4-aminobu 65.1 19 0.00041 32.5 6.3 40 135-180 78-117 (420)
152 TIGR03251 LAT_fam L-lysine 6-t 65.1 12 0.00025 34.1 4.9 39 137-181 89-127 (431)
153 PRK06062 hypothetical protein; 64.9 17 0.00037 33.4 5.9 42 133-181 95-136 (451)
154 PLN02483 serine palmitoyltrans 64.7 29 0.00063 32.2 7.5 100 88-213 102-204 (489)
155 PRK06939 2-amino-3-ketobutyrat 64.6 33 0.00071 30.0 7.6 60 132-213 86-145 (397)
156 PRK12414 putative aminotransfe 64.6 44 0.00095 29.6 8.4 44 129-176 66-109 (384)
157 TIGR01365 serC_2 phosphoserine 64.4 27 0.00059 31.4 7.0 67 92-170 3-71 (374)
158 PLN00175 aminotransferase fami 64.1 63 0.0014 29.1 9.4 64 108-175 70-133 (413)
159 PRK08960 hypothetical protein; 64.1 28 0.00061 30.8 7.1 63 108-175 48-110 (387)
160 PLN02414 glycine dehydrogenase 63.6 18 0.00039 36.8 6.2 67 130-213 565-635 (993)
161 PRK07495 4-aminobutyrate amino 63.4 22 0.00049 32.3 6.4 42 133-180 83-124 (425)
162 PRK06541 hypothetical protein; 62.8 22 0.00047 32.8 6.2 41 134-181 96-136 (460)
163 COG4992 ArgD Ornithine/acetylo 62.6 27 0.00059 31.8 6.6 38 137-182 88-125 (404)
164 PRK05367 glycine dehydrogenase 62.5 1.5E+02 0.0034 30.1 12.5 132 55-210 43-181 (954)
165 PRK09221 beta alanine--pyruvat 62.5 22 0.00048 32.5 6.2 41 134-181 93-133 (445)
166 PRK07682 hypothetical protein; 62.4 73 0.0016 27.9 9.4 48 125-176 53-100 (378)
167 COG0161 BioA Adenosylmethionin 62.4 29 0.00063 32.1 6.8 67 106-183 65-131 (449)
168 PRK06173 adenosylmethionine--8 62.3 34 0.00073 31.2 7.3 42 133-181 87-128 (429)
169 TIGR00713 hemL glutamate-1-sem 62.1 23 0.00049 31.9 6.1 37 136-180 91-127 (423)
170 PRK08088 4-aminobutyrate amino 61.6 42 0.00091 30.3 7.8 42 134-181 85-126 (425)
171 PRK08912 hypothetical protein; 61.5 81 0.0018 27.8 9.5 42 130-175 64-105 (387)
172 PRK09264 diaminobutyrate--2-ox 61.4 25 0.00054 31.9 6.3 43 133-180 82-126 (425)
173 PRK06207 aspartate aminotransf 61.3 45 0.00097 29.9 7.9 45 128-176 77-121 (405)
174 PRK12462 phosphoserine aminotr 60.2 53 0.0012 29.5 8.0 67 98-169 7-80 (364)
175 PLN02409 serine--glyoxylate am 60.2 37 0.00079 30.4 7.1 43 127-175 36-78 (401)
176 COG0520 csdA Selenocysteine ly 59.1 78 0.0017 28.7 9.0 96 96-208 25-125 (405)
177 PRK07337 aminotransferase; Val 58.8 79 0.0017 27.8 9.0 60 111-175 49-108 (388)
178 PLN03227 serine palmitoyltrans 58.7 49 0.0011 29.6 7.7 58 129-212 43-100 (392)
179 PRK13034 serine hydroxymethylt 58.5 31 0.00066 31.2 6.3 42 128-177 69-110 (416)
180 PRK08742 adenosylmethionine--8 58.5 38 0.00083 31.4 7.0 45 133-182 107-154 (472)
181 PRK10534 L-threonine aldolase; 58.0 41 0.00089 28.9 6.9 40 125-177 30-69 (333)
182 PRK06149 hypothetical protein; 57.8 57 0.0012 33.1 8.6 41 134-181 625-665 (972)
183 TIGR01437 selA_rel uncharacter 57.6 42 0.0009 29.7 7.0 37 132-177 44-80 (363)
184 TIGR01822 2am3keto_CoA 2-amino 57.4 67 0.0014 28.2 8.3 58 130-213 84-141 (393)
185 PRK08363 alanine aminotransfer 57.0 61 0.0013 28.7 8.0 46 127-177 68-113 (398)
186 TIGR00508 bioA adenosylmethion 56.3 76 0.0017 28.8 8.6 41 135-182 90-130 (427)
187 PRK06107 aspartate aminotransf 55.8 48 0.001 29.5 7.1 61 110-175 51-111 (402)
188 PLN00145 tyrosine/nicotianamin 55.6 47 0.001 30.1 7.1 48 125-177 90-137 (430)
189 TIGR02407 ectoine_ectB diamino 55.3 34 0.00075 30.9 6.1 45 132-180 77-122 (412)
190 PRK06148 hypothetical protein; 54.2 21 0.00045 36.4 4.9 42 133-181 663-704 (1013)
191 PRK06931 diaminobutyrate--2-ox 53.3 56 0.0012 30.1 7.2 46 132-181 100-145 (459)
192 PRK06225 aspartate aminotransf 52.6 59 0.0013 28.6 7.1 34 137-177 70-103 (380)
193 PRK00011 glyA serine hydroxyme 51.9 38 0.00082 30.2 5.8 40 129-176 67-106 (416)
194 TIGR01814 kynureninase kynuren 51.7 57 0.0012 29.1 6.9 52 140-209 77-128 (406)
195 PRK15407 lipopolysaccharide bi 51.5 50 0.0011 30.2 6.6 67 129-212 63-129 (438)
196 PRK07309 aromatic amino acid a 51.1 1.2E+02 0.0027 26.7 9.0 44 129-176 67-110 (391)
197 KOG1403 Predicted alanine-glyo 50.9 12 0.00026 33.0 2.3 43 134-182 84-127 (452)
198 PLN02187 rooty/superroot1 50.2 1.4E+02 0.0029 27.5 9.3 48 125-177 104-151 (462)
199 PF00155 Aminotran_1_2: Aminot 50.0 1.1E+02 0.0023 26.4 8.3 72 125-213 40-112 (363)
200 cd06007 R3H_DEXH_helicase R3H 50.0 26 0.00057 22.9 3.3 41 111-151 5-45 (59)
201 PLN02724 Molybdenum cofactor s 50.0 1E+02 0.0022 30.6 8.8 97 95-208 36-136 (805)
202 COG0436 Aspartate/tyrosine/aro 49.1 94 0.002 28.0 7.9 69 107-179 43-111 (393)
203 PRK05937 8-amino-7-oxononanoat 48.3 84 0.0018 27.6 7.4 102 89-213 7-114 (370)
204 PLN02452 phosphoserine transam 48.3 1.4E+02 0.003 26.7 8.7 72 94-170 6-84 (365)
205 PRK07324 transaminase; Validat 48.0 37 0.0008 30.0 5.0 37 131-177 64-100 (373)
206 PF10022 DUF2264: Uncharacteri 47.8 1.5E+02 0.0033 26.5 8.9 124 22-149 2-148 (361)
207 PRK07550 hypothetical protein; 47.2 1E+02 0.0022 27.1 7.7 44 128-176 66-109 (386)
208 TIGR00858 bioF 8-amino-7-oxono 46.9 1.3E+02 0.0027 25.7 8.2 41 160-213 79-119 (360)
209 PRK11658 UDP-4-amino-4-deoxy-L 45.8 1.4E+02 0.0029 26.5 8.3 61 127-212 31-91 (379)
210 PRK05942 aspartate aminotransf 45.5 1.2E+02 0.0026 26.8 8.0 43 130-176 74-116 (394)
211 PRK08636 aspartate aminotransf 44.7 1.2E+02 0.0026 27.0 7.9 43 129-176 71-114 (403)
212 PRK11706 TDP-4-oxo-6-deoxy-D-g 44.4 1E+02 0.0022 27.2 7.3 56 136-212 34-89 (375)
213 PLN02955 8-amino-7-oxononanoat 42.6 91 0.002 29.1 6.8 71 133-213 147-219 (476)
214 PLN02368 alanine transaminase 41.9 1.5E+02 0.0032 26.8 8.0 48 125-177 103-150 (407)
215 KOG1402 Ornithine aminotransfe 41.8 83 0.0018 28.3 6.0 38 139-185 107-144 (427)
216 cd00617 Tnase_like Tryptophana 41.8 95 0.0021 28.4 6.8 41 124-177 48-88 (431)
217 PRK07590 L,L-diaminopimelate a 41.3 2.6E+02 0.0056 24.9 9.7 93 71-172 15-114 (409)
218 PRK08068 transaminase; Reviewe 41.1 1.6E+02 0.0034 26.0 8.0 61 110-175 50-112 (389)
219 PRK13238 tnaA tryptophanase/L- 40.8 85 0.0019 28.9 6.4 41 123-176 72-112 (460)
220 PRK05957 aspartate aminotransf 40.5 1.5E+02 0.0032 26.2 7.7 62 110-176 45-108 (389)
221 PLN02974 adenosylmethionine-8- 40.3 1.5E+02 0.0033 29.7 8.3 25 159-183 429-453 (817)
222 PF12725 DUF3810: Protein of u 39.7 2.5E+02 0.0053 24.7 8.8 27 20-46 94-120 (318)
223 PRK08175 aminotransferase; Val 39.5 1.7E+02 0.0037 25.8 8.0 46 125-174 63-108 (395)
224 TIGR03537 DapC succinyldiamino 39.3 1.5E+02 0.0033 25.6 7.6 43 129-176 36-79 (350)
225 TIGR02326 transamin_PhnW 2-ami 39.2 1E+02 0.0023 26.7 6.5 43 129-176 31-73 (363)
226 PRK07865 N-succinyldiaminopime 37.6 2.7E+02 0.0059 24.1 9.6 59 109-174 44-103 (364)
227 PLN00061 photosystem II protei 37.2 2E+02 0.0043 22.5 6.8 31 19-49 74-104 (150)
228 TIGR01265 tyr_nico_aTase tyros 36.5 1.4E+02 0.0031 26.5 7.0 41 132-177 76-116 (403)
229 TIGR02379 ECA_wecE TDP-4-keto- 35.6 1.3E+02 0.0029 26.7 6.6 60 128-212 30-89 (376)
230 PRK09147 succinyldiaminopimela 35.5 1.5E+02 0.0032 26.2 6.9 63 109-176 46-109 (396)
231 PRK06246 fumarate hydratase; P 35.0 2.6E+02 0.0057 24.2 8.0 72 72-145 163-234 (280)
232 TIGR01827 gatC_rel Asp-tRNA(As 34.2 1.5E+02 0.0032 20.2 5.2 50 27-78 3-54 (73)
233 PRK09148 aminotransferase; Val 33.5 2.3E+02 0.005 25.2 7.9 43 130-176 69-111 (405)
234 TIGR03588 PseC UDP-4-keto-6-de 33.3 2.8E+02 0.006 24.3 8.3 60 127-211 27-86 (380)
235 PRK06938 diaminobutyrate--2-ox 32.8 1.7E+02 0.0036 27.0 7.0 20 161-180 130-150 (464)
236 cd02640 R3H_NRF R3H domain of 32.4 76 0.0016 20.7 3.4 40 112-151 6-46 (60)
237 COG0156 BioF 7-keto-8-aminopel 32.4 2.5E+02 0.0055 25.5 7.8 62 126-213 81-142 (388)
238 COG2406 Protein distantly rela 32.3 1.6E+02 0.0034 23.2 5.6 25 58-82 90-114 (172)
239 TIGR03540 DapC_direct LL-diami 32.3 2.6E+02 0.0056 24.4 7.9 41 130-175 68-109 (383)
240 PF00464 SHMT: Serine hydroxym 31.8 1.1E+02 0.0023 27.9 5.4 45 126-176 59-105 (399)
241 PRK06348 aspartate aminotransf 31.7 2.3E+02 0.005 24.9 7.5 48 125-177 62-109 (384)
242 cd02639 R3H_RRM R3H domain of 31.6 39 0.00084 22.2 1.9 24 128-151 23-46 (60)
243 PRK07366 succinyldiaminopimela 31.2 2.3E+02 0.0049 24.9 7.4 47 125-176 64-111 (388)
244 COG0399 WecE Predicted pyridox 30.9 1.7E+02 0.0036 26.5 6.4 57 106-177 13-69 (374)
245 COG0160 GabT 4-aminobutyrate a 30.5 1.9E+02 0.004 26.9 6.7 24 159-182 119-142 (447)
246 COG1055 ArsB Na+/H+ antiporter 30.2 43 0.00093 30.7 2.6 67 106-180 323-393 (424)
247 cd00614 CGS_like CGS_like: Cys 29.7 2.3E+02 0.005 24.9 7.1 38 127-177 38-75 (369)
248 PRK05355 3-phosphoserine/phosp 29.0 2.5E+02 0.0053 24.8 7.2 41 127-173 42-82 (360)
249 TIGR00722 ttdA_fumA_fumB hydro 28.6 3.4E+02 0.0075 23.4 7.7 74 70-145 154-227 (273)
250 PF02594 DUF167: Uncharacteris 28.5 67 0.0014 22.1 2.7 20 133-152 40-59 (77)
251 TIGR03538 DapC_gpp succinyldia 28.4 2.5E+02 0.0054 24.7 7.2 43 131-176 66-109 (393)
252 COG0521 MoaB Molybdopterin bio 28.1 74 0.0016 25.5 3.3 25 132-168 54-78 (169)
253 PF06956 RtcR: Regulator of RN 28.1 1.5E+02 0.0033 24.0 5.0 50 68-117 79-128 (183)
254 PLN00143 tyrosine/nicotianamin 27.9 2.3E+02 0.0049 25.3 6.9 43 129-176 74-116 (409)
255 cd02641 R3H_Smubp-2_like R3H d 27.4 91 0.002 20.2 3.1 39 113-151 7-46 (60)
256 PRK08574 cystathionine gamma-s 27.1 2E+02 0.0043 25.7 6.3 60 126-211 50-109 (385)
257 PLN02994 1-aminocyclopropane-1 27.0 1.3E+02 0.0029 23.3 4.5 42 130-176 93-136 (153)
258 PRK09440 avtA valine--pyruvate 26.2 3E+02 0.0065 24.4 7.3 38 132-174 77-114 (416)
259 PRK14808 histidinol-phosphate 25.9 1.7E+02 0.0036 25.4 5.5 40 130-177 57-96 (335)
260 TIGR01366 serC_3 phosphoserine 25.3 3.9E+02 0.0084 23.5 7.8 44 126-175 34-78 (361)
261 COG4867 Uncharacterized protei 25.2 2.8E+02 0.006 25.9 6.7 58 27-85 180-237 (652)
262 COG3977 Alanine-alpha-ketoisov 24.8 2.3E+02 0.005 25.2 5.9 61 108-173 52-113 (417)
263 TIGR01364 serC_1 phosphoserine 24.5 2.4E+02 0.0053 24.7 6.3 40 128-173 32-72 (349)
264 COG0542 clpA ATP-binding subun 24.4 2.4E+02 0.0051 28.2 6.6 76 71-152 494-576 (786)
265 PRK12821 aspartyl/glutamyl-tRN 24.4 1.5E+02 0.0032 27.6 4.9 47 34-80 417-467 (477)
266 PRK03080 phosphoserine aminotr 24.0 3.6E+02 0.0079 23.8 7.4 41 127-173 42-83 (378)
267 PF01041 DegT_DnrJ_EryC1: DegT 23.8 2E+02 0.0043 25.2 5.6 50 112-176 9-59 (363)
268 PRK15391 fumarate hydratase Fu 23.3 4.1E+02 0.0088 25.4 7.6 79 73-152 205-289 (548)
269 PLN02231 alanine transaminase 23.2 2.4E+02 0.0053 26.5 6.3 67 106-177 142-211 (534)
270 PF15509 DUF4650: Domain of un 23.0 5.6E+02 0.012 24.2 8.3 96 21-116 308-407 (520)
271 PRK07681 aspartate aminotransf 22.9 5.3E+02 0.011 22.7 8.3 64 108-176 48-112 (399)
272 PRK13456 DNA protection protei 22.7 3.7E+02 0.008 21.9 6.4 44 36-82 71-117 (186)
273 COG4041 Predicted membrane pro 22.7 1.8E+02 0.0039 22.5 4.3 77 65-152 31-109 (171)
274 PRK13479 2-aminoethylphosphona 22.7 2.7E+02 0.0058 24.1 6.2 44 129-177 33-76 (368)
275 PRK02610 histidinol-phosphate 22.6 2E+02 0.0043 25.3 5.4 40 129-175 66-109 (374)
276 PRK04870 histidinol-phosphate 22.5 5E+02 0.011 22.3 8.4 30 139-174 69-98 (356)
277 PRK06855 aminotransferase; Val 22.4 2.7E+02 0.0059 25.1 6.4 40 130-174 74-113 (433)
278 PRK08230 tartrate dehydratase 22.1 5.4E+02 0.012 22.6 7.8 73 71-145 165-237 (299)
279 PRK06836 aspartate aminotransf 22.0 4.4E+02 0.0095 23.2 7.5 39 130-175 74-114 (394)
280 PLN03032 serine decarboxylase; 21.0 4.6E+02 0.01 23.5 7.4 88 26-114 4-104 (374)
281 PRK05387 histidinol-phosphate 20.7 2.3E+02 0.0049 24.4 5.3 34 137-177 64-97 (353)
282 COG0783 Dps DNA-binding ferrit 20.3 4.3E+02 0.0093 20.7 7.0 56 24-83 54-110 (156)
283 TIGR01264 tyr_amTase_E tyrosin 20.0 3.6E+02 0.0078 23.8 6.5 40 130-175 74-113 (401)
No 1
>PLN02590 probable tyrosine decarboxylase
Probab=100.00 E-value=2.8e-44 Score=331.25 Aligned_cols=195 Identities=50% Similarity=0.978 Sum_probs=181.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHhHhhcCCCCcCCC
Q 036996 18 SADLEPKSFSDESKAVIDFIADYYKNIEK----YPVQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHWQS 93 (214)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~pv~~~~~~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~ 93 (214)
+.++++++||+.++++++.+.+|++++.+ +||.+.+.|+++++.++.++|++|++++++++++.+.+.++.++|+|
T Consensus 51 ~~~m~~~~~r~~~~~~~d~i~~~~~~~~~~~~~~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p~~~~~~h 130 (539)
T PLN02590 51 MKPMDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGITHWQS 130 (539)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCcCCC
Confidence 56699999999999999999999999887 69999999999999999999999999999999999999999999999
Q ss_pred CCcceeccCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHH
Q 036996 94 PNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCT 173 (214)
Q Consensus 94 pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~A 173 (214)
||||||+++++++++++||+|++++|+++..|+.||++++||++|++||++|+|+|+.+..++.++|+||+|||+|||+|
T Consensus 131 P~f~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~a 210 (539)
T PLN02590 131 PSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVV 210 (539)
T ss_pred CCeeEeccCCCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999875433447899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhcC
Q 036996 174 LAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKLI 214 (214)
Q Consensus 174 l~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~ll 214 (214)
|++||++..++.+. .+.+++++|+|+++||||+|||+++
T Consensus 211 l~aAR~~~~~~~g~--~~~~~~vvy~S~~aH~Sv~KAa~il 249 (539)
T PLN02590 211 VLAARDRILKKVGK--TLLPQLVVYGSDQTHSSFRKACLIG 249 (539)
T ss_pred HHHHHHHHHhhhcc--cCCCCEEEEecCCchHHHHHHHHHc
Confidence 99999988765443 4568999999999999999999975
No 2
>PLN02880 tyrosine decarboxylase
Probab=100.00 E-value=5.6e-43 Score=320.86 Aligned_cols=197 Identities=53% Similarity=1.009 Sum_probs=182.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHhHhhcCCCCcCCCCC
Q 036996 16 SFSADLEPKSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHWQSPN 95 (214)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~pr 95 (214)
..+..+|+++|++.++++++.+.+|+++..++||.+...|+++++.++..+|++|.+++++++++.+.+.++.++|+|||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~ 84 (490)
T PLN02880 5 EWLRPMDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVTHWQSPN 84 (490)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 34556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHH
Q 036996 96 FFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLA 175 (214)
Q Consensus 96 ~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~ 175 (214)
|+||+++++++++++||++++.+|+|+..|+.||++++||++|++|+++++|+|+++..++.++|++|+|||+|||+||+
T Consensus 85 f~~~~~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~ 164 (490)
T PLN02880 85 YFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLL 164 (490)
T ss_pred eeEeccCCCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987543344689999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhcC
Q 036996 176 AARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKLI 214 (214)
Q Consensus 176 aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~ll 214 (214)
+||++.+++.+. .+.++++||+|+++|||+.|||+++
T Consensus 165 ~AR~~~~~~~g~--~~~~~~vv~~S~~aH~Sv~Kaa~~l 201 (490)
T PLN02880 165 AARDRVLRKVGK--NALEKLVVYASDQTHSALQKACQIA 201 (490)
T ss_pred HHHHHHHHHhcc--cccCCeEEEEcCCchHHHHHHHHHc
Confidence 999998766553 3457899999999999999999985
No 3
>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=299.39 Aligned_cols=193 Identities=46% Similarity=0.858 Sum_probs=182.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHhHhhcCCCCcCCCCCcceec
Q 036996 21 LEPKSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHWQSPNFFGYF 100 (214)
Q Consensus 21 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~~ 100 (214)
++.++||+.+++++|+|+||+++++++||+|.++|..++++++...|++|+++++|++++.+.+.|+.+||+||+|++|+
T Consensus 1 Md~~efR~~gk~mVD~IadY~e~ir~r~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAyf 80 (511)
T KOG0628|consen 1 MDSEEFREEGKEMVDYIADYLENIRKRRVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAYF 80 (511)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeEc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCC--CCCCceecCCchHHHHHHHHHHH
Q 036996 101 QANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFS--GTGGGVLHGSTCESLVCTLAAAR 178 (214)
Q Consensus 101 ~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~--~~~~G~~tsGGt~aNl~Al~aAR 178 (214)
+++.++++++||+|.+.++.-+++|..||+.+++|..|++||++|+|+|+.|+.. +.+||++.+..|+|+|.+|++||
T Consensus 81 pa~~s~~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR 160 (511)
T KOG0628|consen 81 PAGNSYPSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAAR 160 (511)
T ss_pred cCccchHHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988863 58999999999999999999999
Q ss_pred HHHHHHhCCCC------CCCCceEEEEeCCCchHHHHHhhc
Q 036996 179 DKALEKLGGGF------DNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 179 ~~~~~~~~~g~------~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
.+++++.+.+- .-..++|+|||+++|.||+|||-+
T Consensus 161 ~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i 201 (511)
T KOG0628|consen 161 TEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLI 201 (511)
T ss_pred HHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhh
Confidence 99998766531 124689999999999999999965
No 4
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=100.00 E-value=2.1e-37 Score=275.58 Aligned_cols=160 Identities=41% Similarity=0.802 Sum_probs=139.7
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHHhhcccCcccccCChhHHHH
Q 036996 55 PGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATEL 134 (214)
Q Consensus 55 ~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~i 134 (214)
|+++++.++..+|++|.++++|++++++.+.++..+|+||+|+||+++++++++++||++++++|+|+..|+.+|++++|
T Consensus 1 P~~l~~~~~~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~ 80 (373)
T PF00282_consen 1 PGELRARLDEELPEEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEI 80 (373)
T ss_dssp TTSSGGGCHCCHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHH
T ss_pred ChhhhhcCccccccCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcccccccccccccccc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCC-CCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 135 ESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGG-GFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 135 E~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~-g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
|++|++|+++++|+|+.+...+.++|+||+|||+||++||++||++..++.+. |....+++++|+|+++|||+.|||++
T Consensus 81 E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~ 160 (373)
T PF00282_consen 81 EREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARI 160 (373)
T ss_dssp HHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHH
T ss_pred hHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcce
Confidence 99999999999999966543334799999999999999999999999876442 22224689999999999999999997
Q ss_pred C
Q 036996 214 I 214 (214)
Q Consensus 214 l 214 (214)
+
T Consensus 161 l 161 (373)
T PF00282_consen 161 L 161 (373)
T ss_dssp T
T ss_pred e
Confidence 5
No 5
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=100.00 E-value=7e-33 Score=258.21 Aligned_cols=192 Identities=15% Similarity=0.226 Sum_probs=158.1
Q ss_pred CccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHhHhhcCCCC
Q 036996 12 THGTSFSAD--LEPKSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCILPGLT 89 (214)
Q Consensus 12 ~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~ 89 (214)
+...-|+.| +|.+.|++.+.++++.+.+++.+.....- +.+++++++. ..+.+...+++++++++.+.+.++++
T Consensus 3 ~~~a~flgpk~en~~~~~~~~~~~~~~~~~~r~~~~p~d~-~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~~~sv 78 (608)
T TIGR03811 3 NLNALFIGDKAENGQLYKDLLNKLVDEHLGWRQNYMPQDK-PVISPQERTS---KSFTKTVNNMKDVLDELSSRLRTESV 78 (608)
T ss_pred ChhheeecCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCHHHhcc---cccccCccCHHHHHHHHHHHHhcCCC
Confidence 344557766 68899999999999999999988543210 2455665555 35556666899999999999999999
Q ss_pred cCCCC-CcceeccCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchH
Q 036996 90 HWQSP-NFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCE 168 (214)
Q Consensus 90 ~~~~p-r~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~ 168 (214)
+|+|| ||+|||++++++++++|+++++++|+|+..|+.||++++||++|++|+|+|+|||++ +|+||+|||+
T Consensus 79 ~~~~P~ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~-------~G~~TsGGT~ 151 (608)
T TIGR03811 79 PWHSAGRYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNG-------WGHIVADGSL 151 (608)
T ss_pred CCCCccceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCC-------CeEEeCChHH
Confidence 99999 999999999999999999999999999999999999999999999999999999974 8999999999
Q ss_pred HHHHHHHHHHHHHH-----HHhCC----C---------------------------------C--CCCCce-EEEEeCCC
Q 036996 169 SLVCTLAAARDKAL-----EKLGG----G---------------------------------F--DNITKL-AVYASDQT 203 (214)
Q Consensus 169 aNl~Al~aAR~~~~-----~~~~~----g---------------------------------~--~~~~~~-~i~~s~~a 203 (214)
||++||++||+.+. +..+. | . ....++ ++++|+++
T Consensus 152 ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~a 231 (608)
T TIGR03811 152 ANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTK 231 (608)
T ss_pred HHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCc
Confidence 99999999999751 11000 0 0 011233 79999999
Q ss_pred chHHHHHhhcC
Q 036996 204 HFALQKSAKLI 214 (214)
Q Consensus 204 H~Si~KAa~ll 214 (214)
|||+.|||+++
T Consensus 232 HyS~~KAa~il 242 (608)
T TIGR03811 232 HYSWLKAADII 242 (608)
T ss_pred cHHHHHHHHHc
Confidence 99999999875
No 6
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=100.00 E-value=2.8e-32 Score=251.45 Aligned_cols=193 Identities=19% Similarity=0.249 Sum_probs=150.9
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHHHHHHHh--cCCCCCCCCCChhHHhhcC-CCCCCCCCCCHHHHHHHHhHhhcCCCCcC
Q 036996 16 SFSADLEP-KSFSDESKAVIDFIADYYKN--IEKYPVQSKVEPGYLSARL-PDTAPHSPESLDDILKDVTDCILPGLTHW 91 (214)
Q Consensus 16 ~~~~~~~~-~~~~~~~~~~~~~i~~~~~~--~~~~pv~~~~~~~~l~~~~-~~~lP~~g~~~~~il~~l~~~~~~~~~~~ 91 (214)
-|-.|..+ ..+.++.+++.+.+.+|+.+ ....|+.+ ++++.+ ...+|++|.+.+++++++.+.+.+++++|
T Consensus 13 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 87 (522)
T TIGR03799 13 IFTVPEAPDSTLGRIEQKISQNLAGFLQEHIVAIEKPLS-----EIEKDFSSAEIPEQPTFVSEHTQFLLDKLVAHSVHT 87 (522)
T ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccCCCch-----hhhhcccccCCCCCCCChHHHHHHHHHHHHcCCCCC
Confidence 34445444 45777788888888888777 33334443 334333 56899999999999999999999999999
Q ss_pred CCCCcceeccCC-CChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCC-CC----c-CCCCCCceecC
Q 036996 92 QSPNFFGYFQAN-ASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPS-SF----L-FSGTGGGVLHG 164 (214)
Q Consensus 92 ~~pr~~g~~~~~-~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~-~~----~-~~~~~~G~~ts 164 (214)
+||||+|||+++ |...+.+++ +++.+|+|+..|+.||++++||++|++|+++|+|.++ .+ . ....++|+||+
T Consensus 88 ~hP~f~g~~~~~~p~~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~ts 166 (522)
T TIGR03799 88 ASPSFIGHMTSALPYFMLPLSK-LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCS 166 (522)
T ss_pred CCCCeEEeccCCCchHHHHHHH-HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcC
Confidence 999999999997 555555788 6779999999999999999999999999999996332 11 1 12246899999
Q ss_pred CchHHHHHHHHHHHHHHHHHhCC-------CCC------CCCceEEEEeCCCchHHHHHhhcC
Q 036996 165 STCESLVCTLAAARDKALEKLGG-------GFD------NITKLAVYASDQTHFALQKSAKLI 214 (214)
Q Consensus 165 GGt~aNl~Al~aAR~~~~~~~~~-------g~~------~~~~~~i~~s~~aH~Si~KAa~ll 214 (214)
|||+||++||++||++.++..+. |+. +.++++||+|+.+|||+.||++++
T Consensus 167 GGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~l 229 (522)
T TIGR03799 167 GGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVL 229 (522)
T ss_pred chHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHc
Confidence 99999999999999998754221 221 235789999999999999999864
No 7
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-33 Score=241.85 Aligned_cols=186 Identities=24% Similarity=0.339 Sum_probs=171.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHhHhhcCCCCcCCCCCccee
Q 036996 22 EPKSFSDESKAVIDFIADYYKNIEKY--PVQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHWQSPNFFGY 99 (214)
Q Consensus 22 ~~~~~~~~~~~~~~~i~~~~~~~~~~--pv~~~~~~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~ 99 (214)
+.+..+.++.++++.+.+|...-.++ .|.+++.|++|+..++.++|++|+++++|++++++.+ .+.+++.|||||+.
T Consensus 29 ~~~~te~fl~~v~~~ll~~v~~~~dr~~kv~~fhhP~~L~~l~nlel~~~~esl~qil~~cr~tl-~y~vKTgHprffNQ 107 (510)
T KOG0629|consen 29 GEEVTEPFLRAVVDILLDYVKKGFDRSQKVLDFHHPDELKELFNLELRDQPESLAQILEDCRDTL-KYSVKTGHPRFFNQ 107 (510)
T ss_pred CchhhHhhhHHHHHHHHHhhccCCcccceeecccChHHHHHHhCcccCCChhhHHHHHHHHHHHH-HhhhccCCCcchhh
Confidence 44456888999999999996665544 8999999999999999999999999999999999965 57789999999999
Q ss_pred ccCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHH
Q 036996 100 FQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARD 179 (214)
Q Consensus 100 ~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~ 179 (214)
+.++.++.+++|+|++++.|.|+.+++.+|+++.||.+|+.-+.+++||+.+ ++|+|++||+.||+||+.+||.
T Consensus 108 l~~glD~~~Lag~wlT~t~Ntn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~------~DgIf~pggsisn~Ya~~~Ary 181 (510)
T KOG0629|consen 108 LSSGLDPIGLAGEWLTSTANTNMFTYEIAPVFVLMEEEVLAKMREIVGWEEG------GDGIFAPGGSISNMYAMNCARY 181 (510)
T ss_pred hccCCCHHHHHHHHHHhccCCCCceEEecceEEeehHHHHHHHHHHhCCCCC------CCceecCCchhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999986 4899999999999999999999
Q ss_pred HHHHHhC-CCCCCCCceEEEEeCCCchHHHHHhhcC
Q 036996 180 KALEKLG-GGFDNITKLAVYASDQTHFALQKSAKLI 214 (214)
Q Consensus 180 ~~~~~~~-~g~~~~~~~~i~~s~~aH~Si~KAa~ll 214 (214)
+.+|+.+ .|+.+.|++++|+|+++||||.|||+++
T Consensus 182 k~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~l 217 (510)
T KOG0629|consen 182 KNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFL 217 (510)
T ss_pred hcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHh
Confidence 9999854 5888889999999999999999999864
No 8
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.94 E-value=8.6e-26 Score=205.46 Aligned_cols=173 Identities=20% Similarity=0.190 Sum_probs=140.9
Q ss_pred HHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHhHhhc-CCCCcCCCCCcceeccCCCChhhhHHHHH
Q 036996 36 FIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCIL-PGLTHWQSPNFFGYFQANASTAGFLGEML 114 (214)
Q Consensus 36 ~i~~~~~~~~~~pv~~~~~~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~-~~~~~~~~pr~~g~~~~~~~~~~~~~d~l 114 (214)
.+.++......+++-+...+-.-.......+|+.+.+.++++.++.+... +...++.||+++.+..+.+.++.++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~ 82 (460)
T COG0076 3 GLIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELL 82 (460)
T ss_pred hHHHHHHhhccCCCccccccchhhhhhhccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHH
Confidence 34444444444444344444444455567899999999999999999844 44444559999999999999999999999
Q ss_pred HhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCC-CCCCCC
Q 036996 115 CSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGG-GFDNIT 193 (214)
Q Consensus 115 ~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~-g~~~~~ 193 (214)
..++|+|++.|+.+|+++++|++|++|+++|+|+|+++ .|+||+|||+||++|+++||++..+.... +.....
T Consensus 83 ~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~------~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~ 156 (460)
T COG0076 83 VSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEA------SGTFTSGGTEANLLALLAARERWRKRALAESGKPGG 156 (460)
T ss_pred HHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCC------ceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCC
Confidence 99999999999999999999999999999999999764 89999999999999999999999865432 112223
Q ss_pred ceEEEEeCCCchHHHHHhhcC
Q 036996 194 KLAVYASDQTHFALQKSAKLI 214 (214)
Q Consensus 194 ~~~i~~s~~aH~Si~KAa~ll 214 (214)
.++||+|+++|||++|||+++
T Consensus 157 ~P~ii~s~~aH~s~~Kaa~~l 177 (460)
T COG0076 157 KPNIVCSETAHFSFEKAARYL 177 (460)
T ss_pred CCeEEecCcchhHHHHHHHHh
Confidence 558999999999999999875
No 9
>PLN02263 serine decarboxylase
Probab=99.91 E-value=4.4e-24 Score=193.73 Aligned_cols=120 Identities=20% Similarity=0.361 Sum_probs=106.4
Q ss_pred HHHHHHHHhHhhcCCCCcCCCCCcceeccCCCCh-hhhHHHHHHhhcccCcccccCCh---hHHHHHHHHHHHHHHHcCC
Q 036996 73 LDDILKDVTDCILPGLTHWQSPNFFGYFQANAST-AGFLGEMLCSGFNVVGFNWLASP---VATELESIVMDWMGKMLKL 148 (214)
Q Consensus 73 ~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~-~~~~~d~l~~~~n~n~~~~~~sp---~~~~iE~~vi~wl~~l~G~ 148 (214)
++++|+++.+.+.++..+ |+|| +...++ ++.+++++...+|+.+..|..+| .+++||++|++|+++|+|+
T Consensus 75 ~~~~l~~~~~~~~~~~~~-----~~gY-p~n~~~d~s~l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~ 148 (470)
T PLN02263 75 MASVLARYRKTLVERTKH-----HLGY-PYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEI 148 (470)
T ss_pred HHHHHHHHHHHHHhcccc-----eeCC-CCcccCChhhHHHHHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCC
Confidence 589999999988876543 9999 555666 89999999999999999999999 6899999999999999999
Q ss_pred CCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhcC
Q 036996 149 PSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKLI 214 (214)
Q Consensus 149 p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~ll 214 (214)
|++. .+|++|+|||||||+||++||++. ++.++|+|+++|||+.|||+++
T Consensus 149 p~~~-----~~G~vtsGGTEaNL~Al~aARe~~-----------~~~vvy~S~~aH~Sv~KAa~ll 198 (470)
T PLN02263 149 EKNE-----YWGYITNCGTEGNLHGILVGREVF-----------PDGILYASRESHYSVFKAARMY 198 (470)
T ss_pred CCCC-----CeEEEeCcHHHHHHHHHHHHHhhc-----------CCcEEEEcCCccHHHHHHHHhc
Confidence 8732 389999999999999999999964 3468999999999999999985
No 10
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.87 E-value=1.1e-21 Score=177.71 Aligned_cols=142 Identities=11% Similarity=0.087 Sum_probs=118.3
Q ss_pred CCCCCCCCCCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHH
Q 036996 63 PDTAPHSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWM 142 (214)
Q Consensus 63 ~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl 142 (214)
...+|++|.+.+++++++...+.. .+..||+|++|+.+++.+. +.+++..++|+|.+.|..+|..+++|+++++|+
T Consensus 14 ~~~~p~~~~~~~~~~~~~~~~iyl--d~~a~~~~~~~~tt~~~p~--~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~l 89 (431)
T TIGR01788 14 KYRMPEEEMPPDAAYQLIHDELSL--DGNPRLNLATFVTTWMEPE--ARKLMDETINKNMIDKDEYPQTAEIENRCVNML 89 (431)
T ss_pred cccCCCCCCCHHHHHHHHHHHhhh--cCCcceeeeeeeCCCCCHH--HHHHHHHHHhcCCCCcccCccHHHHHHHHHHHH
Confidence 368999999999999999987653 3567899999999887776 579999999999889999999999999999999
Q ss_pred HHHcCCC-C-CCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhC-CCCCCCCceEEEEeCCCchHHHHHhhcC
Q 036996 143 GKMLKLP-S-SFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLG-GGFDNITKLAVYASDQTHFALQKSAKLI 214 (214)
Q Consensus 143 ~~l~G~p-~-~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~-~g~~~~~~~~i~~s~~aH~Si~KAa~ll 214 (214)
++++|+| + +. .+|++||||||||++||++||++...+.+ .|. ...+++||+|+++|+|+.|+++++
T Consensus 90 a~llg~~~~~~~-----~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~-~~~~~~ii~s~~~H~sv~ka~~~l 158 (431)
T TIGR01788 90 ADLWHAPAKDAE-----AVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGK-PTDKPNLVMGSNVQVCWEKFARYF 158 (431)
T ss_pred HHHhCCCCCCCC-----CeEEEechHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCcEEEEcCcchHHHHHHHHHc
Confidence 9999998 2 22 48999999999999999999976433211 111 124678999999999999999764
No 11
>PLN03032 serine decarboxylase; Provisional
Probab=99.72 E-value=3.6e-17 Score=145.74 Aligned_cols=121 Identities=21% Similarity=0.321 Sum_probs=97.5
Q ss_pred HHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHHhhcccCcccccCCh---hHHHHHHHHHHHHHHHcCCC
Q 036996 73 LDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASP---VATELESIVMDWMGKMLKLP 149 (214)
Q Consensus 73 ~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp---~~~~iE~~vi~wl~~l~G~p 149 (214)
.+++++++.+.+. -.+..|.||.......++.+..++....|+-+..+..++ .+.++|+++++|+++++|+|
T Consensus 8 ~~~~~~~~~~~~~-----~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~ 82 (374)
T PLN03032 8 MADILASYDKLLA-----EKSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE 82 (374)
T ss_pred HHHHHHHHHHHHH-----HhhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCC
Confidence 4567777777554 356789999988777778888888877666555555443 68999999999999999998
Q ss_pred CCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhcC
Q 036996 150 SSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKLI 214 (214)
Q Consensus 150 ~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~ll 214 (214)
++. .+|+|||||||||++|+++||++. ++.++|+|+.+|||+.||++++
T Consensus 83 ~~~-----~~G~fTsGGTEaNl~al~~ar~~~-----------~~~~vi~s~~~H~Sv~kaa~~l 131 (374)
T PLN03032 83 KDE-----YWGYITTCGTEGNLHGILVGREVF-----------PDGILYASRESHYSVFKAARMY 131 (374)
T ss_pred Ccc-----CCEEEeCchHHHHHHHHHHHHHhC-----------CCcEEEeCCCceeHHHHHHHHc
Confidence 653 479999999999999999999863 2237899999999999999864
No 12
>PRK02769 histidine decarboxylase; Provisional
Probab=99.70 E-value=7.6e-17 Score=144.07 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=92.4
Q ss_pred HHHHHHHhHhhcCCCCcCCCCCcceeccCCCCh-hhhHHHHHHhhcccCcccccCCh----hHHHHHHHHHHHHHHHcCC
Q 036996 74 DDILKDVTDCILPGLTHWQSPNFFGYFQANAST-AGFLGEMLCSGFNVVGFNWLASP----VATELESIVMDWMGKMLKL 148 (214)
Q Consensus 74 ~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~-~~~~~d~l~~~~n~n~~~~~~sp----~~~~iE~~vi~wl~~l~G~ 148 (214)
.+.|+++...+. .||+++.+++...++ .+.+++++....|+.+ .|..++ .+.++|+++++|+++++|+
T Consensus 8 ~~~~~~~~~~~~------~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~g-np~~~~~~g~~~~~~e~~~~~~~a~l~g~ 80 (380)
T PRK02769 8 QKEIEDFWLYLR------HNQYFNVGYPEAADFDYSALKRFFSFSINNCG-DPYSKSNYPLNSFDFERDVMNFFAELFKI 80 (380)
T ss_pred HHHHHHHHHHHH------HhhhcccCCCchhhcCHHHHHHHHHhhhccCC-CccccCCCCCChHHHHHHHHHHHHHHhCC
Confidence 455666665442 567766666555544 7899999999888644 455555 3789999999999999999
Q ss_pred CCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhcC
Q 036996 149 PSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKLI 214 (214)
Q Consensus 149 p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~ll 214 (214)
|+.. .+|+|||||||||++|+++||++. +..+||+|+.+|||+.|+++++
T Consensus 81 ~~~~-----~~G~~TsGgTean~~a~~~ar~~~-----------~~~~ii~s~~~H~Sv~ka~~~l 130 (380)
T PRK02769 81 PFNE-----SWGYITNGGTEGNLYGCYLARELF-----------PDGTLYYSKDTHYSVSKIARLL 130 (380)
T ss_pred CCCC-----CCEEEecChHHHHHHHHHHHHHhC-----------CCcEEEeCCCceehHHHHHHHc
Confidence 8643 489999999999999999999853 2347899999999999999864
No 13
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.60 E-value=6.2e-15 Score=128.63 Aligned_cols=112 Identities=38% Similarity=0.603 Sum_probs=95.5
Q ss_pred cceeccCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCC-CCCcCCCCCCceecCCchHHHHHHH
Q 036996 96 FFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLP-SSFLFSGTGGGVLHGSTCESLVCTL 174 (214)
Q Consensus 96 ~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p-~~~~~~~~~~G~~tsGGt~aNl~Al 174 (214)
|+++++++++++++++|+++..+|+|...|..+|...++|+++.+|+++++|++ +. ..|+||+|||+||++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~------~~~~~t~ggt~a~~~al 74 (345)
T cd06450 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSED------ADGVFTSGGSESNLLAL 74 (345)
T ss_pred CcccccCCCcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCC------CCEEEeCChhHHHHHHH
Confidence 688998999999999999999999999999999999999999999999999997 33 37999999999999999
Q ss_pred HHHHHHHHHHhCC-CCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 175 AAARDKALEKLGG-GFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 175 ~aAR~~~~~~~~~-g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
.++|++..++.+. |....++.+|++++.+|+|+.+++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~ 114 (345)
T cd06450 75 LAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAY 114 (345)
T ss_pred HHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHH
Confidence 9999876543221 11112356899999999999999864
No 14
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=99.27 E-value=5.5e-11 Score=106.34 Aligned_cols=137 Identities=17% Similarity=0.158 Sum_probs=108.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHhHhhcCCCCcCCCCCcceeccCC-CChhhhHHHHHHhhccc-CcccccCChhHHHHHHHH
Q 036996 61 RLPDTAPHSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQAN-ASTAGFLGEMLCSGFNV-VGFNWLASPVATELESIV 138 (214)
Q Consensus 61 ~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~-~~~~~~~~d~l~~~~n~-n~~~~~~sp~~~~iE~~v 138 (214)
.....+|++|.+-+++++.+.+...-+. +|.-.+..|-++.. +... .++...+|- |....+..|+.+.+|+++
T Consensus 51 ~~~~~lP~~gl~~d~v~~~i~~~~~ld~-~~~~~~vS~~v~~~~~~~~----~l~~~~~~k~N~l~~d~fp~~~~~e~~~ 125 (491)
T KOG1383|consen 51 MYFFTLPSKGLPKDAVLELINDELMLDG-NPRLGLASGVVYWGEPELD----KLIMEAYNKFNPLHPDEFPVVRKLEAEC 125 (491)
T ss_pred ceeecCCCCCCCHHHHHHHHHHHhccCC-CcccCeeeEEEecCCcchh----hHHHHHHhhcCccCccccchhHHHHHHH
Confidence 3347899999999999999998665443 45555555555443 3333 455555555 778899999999999999
Q ss_pred HHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 139 MDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 139 i~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
|++++.||+-|++ .+|..|+|||+|.+.+.+..|++....+ ++.++.+.+++.+|.+++|++++
T Consensus 126 Vnm~~~L~~~~~~------~~g~~t~G~Ses~l~~~k~~~~~r~~~k-----~I~~p~iv~~~~v~~a~eK~a~y 189 (491)
T KOG1383|consen 126 VNMIANLFNAPSD------SCGCGTVGGSESGLAAKKSYRNRRKAQK-----GIDKPNIVTPQNVHAAFEKAARY 189 (491)
T ss_pred HHHHHHHhcCCcc------ccCccccccchHHHHHHHHHHHHHHhcc-----CCCCccccchHHHHHHHHHHHhh
Confidence 9999999999965 4999999999999999999999876542 34677888999999999999975
No 15
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=98.93 E-value=9e-09 Score=90.63 Aligned_cols=122 Identities=17% Similarity=0.220 Sum_probs=90.3
Q ss_pred CCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCC
Q 036996 71 ESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPS 150 (214)
Q Consensus 71 ~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~ 150 (214)
.+.+|+|+.+++.-.+ ..... ||++.+.+.+.+..+ +.+...+..+.......|....++.++.+++++++|.|+
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 76 (371)
T PRK13520 2 LSEEEILEELEEYRSE-DLKYE--RILSSMCTEPHPIAR--KAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPD 76 (371)
T ss_pred CCHHHHHHHHHHHHhc-CCCHH--HeeeeeecCchHHHH--HHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCC
Confidence 3578999999986555 44555 689998877665533 555555554433333346778899999999999999986
Q ss_pred CCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 151 SFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 151 ~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
. .+++|+|||++|..++.++|+... + ++-.|++++..|+|+.++++.
T Consensus 77 ~-------~~~~~~ggt~a~~~a~~~~~~~~~---~------~~~~vl~~~~~h~s~~~~~~~ 123 (371)
T PRK13520 77 A-------YGYITSGGTEANIQAVRAARNLAK---A------EKPNIVVPESAHFSFDKAADM 123 (371)
T ss_pred C-------CeEEecCcHHHHHHHHHHHHhhcc---C------CCceEEecCcchHHHHHHHHH
Confidence 4 589999999999999999876521 1 234567899999999998764
No 16
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=98.87 E-value=2.4e-08 Score=90.76 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=94.5
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhh------HHHHHHhhcccCcccccCC
Q 036996 55 PGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGF------LGEMLCSGFNVVGFNWLAS 128 (214)
Q Consensus 55 ~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~------~~d~l~~~~n~n~~~~~~s 128 (214)
|++++......+|+++ +.+++++++.+...++.....|++++|.-..+...++. .+++++. +|++.. +.+
T Consensus 32 p~~~~~~~~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~-y~~~~~--~~~ 107 (447)
T PRK00451 32 PEELRLKRPLDLPPGL-SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAVVDHIISRSEFYTA-YTPYQP--EIS 107 (447)
T ss_pred CHHHHhCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHHHHHHHhchhHHHh-cCCCCC--ccc
Confidence 6778877778899976 99999999999775555445688888843222111222 2344444 555433 446
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHH
Q 036996 129 PVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQ 208 (214)
Q Consensus 129 p~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~ 208 (214)
+...+.+.+..+|+++++|.+.+ .+++|+|||+ ++.++..|+... +.-.|++++..|.+..
T Consensus 108 ~g~~~~~~e~~~~la~l~g~~~~-------~v~~~~g~t~-~~~~~~~a~~~~-----------~g~~Vlv~~~~~~~~~ 168 (447)
T PRK00451 108 QGTLQAIFEYQTMICELTGMDVA-------NASMYDGATA-LAEAALMAVRIT-----------KRKKVLVSGAVHPEYR 168 (447)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcc-------eEEecCcHHH-HHHHHHHHHHhc-----------CCCEEEEeCccCHHHH
Confidence 77788888999999999999874 5889999996 566666666421 1224677999999999
Q ss_pred HHhh
Q 036996 209 KSAK 212 (214)
Q Consensus 209 KAa~ 212 (214)
++++
T Consensus 169 ~~~~ 172 (447)
T PRK00451 169 EVLK 172 (447)
T ss_pred HHHH
Confidence 8865
No 17
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=98.81 E-value=8.9e-08 Score=84.44 Aligned_cols=124 Identities=16% Similarity=0.227 Sum_probs=91.2
Q ss_pred HHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCC
Q 036996 73 LDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSF 152 (214)
Q Consensus 73 ~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~ 152 (214)
.+++++++.+ +..++++.++||++..+.+.+.+... +.+...+..+.......|....+|.++.+++++++|.++.
T Consensus 2 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~- 77 (373)
T TIGR03812 2 EEEVLEELKE-YRSEDLKYSDGRILGSMCTNPHPIAV--KAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDA- 77 (373)
T ss_pred HHHHHHHHHH-HHhcCCCCCCCcEEEEEeCCchHHHH--HHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCC-
Confidence 4789999999 55677788999999999887666633 3334444443333333467788999999999999999864
Q ss_pred cCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 153 LFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 153 ~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
.+++++|||++|+.++.+.++...+ + .+.-.|++++..|+|+.++++.
T Consensus 78 ------~~~~~~g~~~~~~~~~~~~~~~~~~--~-----~~g~~vl~~~~~h~~~~~~~~~ 125 (373)
T TIGR03812 78 ------YGYIVSGGTEANIQAVRAAKNLARE--E-----KRTPNIIVPESAHFSFEKAAEM 125 (373)
T ss_pred ------CeEEeccHHHHHHHHHHHHHHHHhc--c-----CCCcEEEECCcchHHHHHHHHH
Confidence 6889999999999998887754321 1 1223567899999999998764
No 18
>PRK05367 glycine dehydrogenase; Provisional
Probab=98.35 E-value=6.7e-06 Score=81.39 Aligned_cols=127 Identities=13% Similarity=0.036 Sum_probs=87.4
Q ss_pred CCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHHhhcccCcccc-----cCChhHHHHHHHHHHHHHHH
Q 036996 71 ESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNW-----LASPVATELESIVMDWMGKM 145 (214)
Q Consensus 71 ~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~-----~~sp~~~~iE~~vi~wl~~l 145 (214)
.+..|+++.+++.-.++..-..+..++|+ ......+.+ ++.....+...... +.+.+..+++.++.+|++++
T Consensus 478 ~sE~e~~r~~~~l~~kn~~~~~~~i~lGs-ct~~~~p~~--~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~el 554 (954)
T PRK05367 478 HSETEMMRYLRRLEDKDLALDRSMIPLGS-CTMKLNAAA--EMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEI 554 (954)
T ss_pred CCHHHHHHHHHHHHhcCcCcccceeeCCc-CCCcCCHHH--HHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999855554332344567888 333333333 44444444433322 34445889999999999999
Q ss_pred cCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 146 LKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 146 ~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
+|++. ..+..+||+++|+.+|+++|.+...+ |. .++.+|++|+.+|+|+.+++.+
T Consensus 555 tG~d~--------~sl~~~~ga~ge~agL~a~r~~~~~~-G~----~~r~~vlis~~aH~snp~sa~~ 609 (954)
T PRK05367 555 TGYDA--------VSLQPNAGAQGEYAGLLAIRAYHESR-GE----GHRDVCLIPSSAHGTNPASAVM 609 (954)
T ss_pred HCCCC--------EEECccHHHHHHHHHHHHHHHHhhcc-CC----CCCCEEEEEchhhhhhHHHHHH
Confidence 99985 34567789999999999998764322 21 1356789999999999998865
No 19
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.35 E-value=4.8e-06 Score=81.75 Aligned_cols=124 Identities=12% Similarity=0.049 Sum_probs=90.3
Q ss_pred CHHHHHHHHhHhhcCCCCcCCCCCcceeccCC--CChhhhHHHHHHhhcccCcccccCChh-----HHHHHHHHHHHHHH
Q 036996 72 SLDDILKDVTDCILPGLTHWQSPNFFGYFQAN--ASTAGFLGEMLCSGFNVVGFNWLASPV-----ATELESIVMDWMGK 144 (214)
Q Consensus 72 ~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~--~~~~~~~~d~l~~~~n~n~~~~~~sp~-----~~~iE~~vi~wl~~ 144 (214)
+..|+++.+++.-.++ ....+ +++..+ ..+...+.+++....+.....+-..|. ..+++.++.+|||+
T Consensus 467 sE~e~~r~~~~L~~kn-~~~~~----~fi~lGsctmk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~e 541 (939)
T TIGR00461 467 SETEMLRYLHRLESKD-LALNN----SMIPLGSCTMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCS 541 (939)
T ss_pred CHHHHHHHHHHHHhcC-CCccc----cCCCCccCCCccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHH
Confidence 7788999988854433 22223 333222 345556678887777766554444454 88999999999999
Q ss_pred HcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 145 MLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 145 l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
+.|+|. .++..+||+.+++++|+++|.+.. .++. ..|.+|++|+++|.+..+++++
T Consensus 542 ltGmd~--------~Sl~p~aGA~gE~agL~aiR~y~~-~rge----~~R~~vlip~saHgtnPasa~~ 597 (939)
T TIGR00461 542 ITGFDA--------ISLQPNSGAQGEYAGLRVIRSYHE-SRGE----NHRNICLIPVSAHGTNPASAAM 597 (939)
T ss_pred HHCCCC--------cccCCchHHHHHHHHHHHHHHHHH-hcCC----CCCCEEEEEccccCcCHHHHHH
Confidence 999995 689999999999999999998762 2332 2467889999999888887764
No 20
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=98.06 E-value=1.4e-05 Score=73.12 Aligned_cols=123 Identities=14% Similarity=0.072 Sum_probs=80.4
Q ss_pred CCCCCCCCCHHHHHHHHhHhhcCCCCcCC--------CCCcc---------eeccC---CCChhhhHHHHHHhhcccCcc
Q 036996 64 DTAPHSPESLDDILKDVTDCILPGLTHWQ--------SPNFF---------GYFQA---NASTAGFLGEMLCSGFNVVGF 123 (214)
Q Consensus 64 ~~lP~~g~~~~~il~~l~~~~~~~~~~~~--------~pr~~---------g~~~~---~~~~~~~~~d~l~~~~n~n~~ 123 (214)
..+|++|.+.+.|...+.+.-.-+..+|. ..|.+ ++-.+ +.+..+. +.
T Consensus 28 ~~~p~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~gere~rv~~~~~~~~~~~~~hgigr~~~l~~~-----------q~- 95 (444)
T TIGR03531 28 RKIPEEGWDDETIELFLHELSVMDTNNFPNNVGVGEREGRVFSKLVARRHYRFCHGIGRSGDLVAP-----------QP- 95 (444)
T ss_pred CcCCccCCCHHHHHHHHHHHhcCCcCCCccccCcCcccceeechhhhhcccceecCCCCccccccc-----------Cc-
Confidence 68999999999888887775433333443 22222 22222 1111110 00
Q ss_pred cccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCch-HHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCC
Q 036996 124 NWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTC-ESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQ 202 (214)
Q Consensus 124 ~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt-~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~ 202 (214)
--..|+....++++..+|+++++|.+.-. .+++++||| ++++.+|.++|.+.. ..+.||+.+ .
T Consensus 96 ka~gss~~~~l~~~~e~~~~~~~G~~~~~------~a~~v~~~Tg~al~laL~alr~~~~---------~gd~VI~p~-~ 159 (444)
T TIGR03531 96 KAAGSSLLYKLTNKLVKDFLKLLGLRSIK------SAFVVPLATGMSLSLCLSALRHKRP---------KAKYVIWPR-I 159 (444)
T ss_pred cccCccHHHHHHHHHHHHHHHHcCCCCCC------EEEEECCHHHHHHHHHHHHcCCcCC---------CCCEEEEEC-c
Confidence 11345667899999999999999998432 588999999 899999998875321 135667655 5
Q ss_pred CchHHHHHhhcC
Q 036996 203 THFALQKSAKLI 214 (214)
Q Consensus 203 aH~Si~KAa~ll 214 (214)
+|+|+.||+.++
T Consensus 160 th~S~~kAi~~~ 171 (444)
T TIGR03531 160 DQKSCIKAISTA 171 (444)
T ss_pred ChHHHHHHHHHc
Confidence 799999999764
No 21
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=97.78 E-value=0.0006 Score=62.98 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=90.9
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHhHhhcCCCCcCCCCCcceeccCC-CChhhhHHHHHHhhcccCcccc---cCChh
Q 036996 55 PGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQAN-ASTAGFLGEMLCSGFNVVGFNW---LASPV 130 (214)
Q Consensus 55 ~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~-~~~~~~~~d~l~~~~n~n~~~~---~~sp~ 130 (214)
|+.++..-...+|+ .+..|+++.+.+.-.++.. . ...|.|.=.+. ..++.+.-.++......+-..| ..+.+
T Consensus 35 p~~~~~~~~~~~~~--~se~~~~~~~~~l~~~n~~-~-~~~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG 110 (481)
T PRK04366 35 PEELLRKEPPELPE--VSELEVVRHYTRLSQKNYG-V-DTGFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQG 110 (481)
T ss_pred CHHHhcCCCCCCCC--CCHHHHHHHHHHHHhcCCC-C-CcceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhH
Confidence 34443222345676 7888999999986554432 1 12555554333 3444455444443111233444 35667
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHH
Q 036996 131 ATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKS 210 (214)
Q Consensus 131 ~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KA 210 (214)
..++..++.+|+++++|+++ ..++.++|+.++++++.++|.....+ +. .++..|++++..|.+..++
T Consensus 111 ~lel~~~~~~~la~l~G~~~--------~~l~~~~GA~a~~~~l~~~r~~~~~~-Gd----~~~~~Vlv~~~~hp~~~~~ 177 (481)
T PRK04366 111 ALELMYELQEWLKEITGMDA--------VTLQPAAGAHGELTGLLMIRAYHEAR-GD----TKRTEVIVPDSAHGTNPAS 177 (481)
T ss_pred HHHHHHHHHHHHHHHhCCCc--------eEEEeCcHHHHHHHHHHHHHHHhhcc-Cc----CCCCEEEEcCCccHhHHHH
Confidence 78999999999999999974 46777888899999988887654321 11 1344677899999999988
Q ss_pred hhc
Q 036996 211 AKL 213 (214)
Q Consensus 211 a~l 213 (214)
++.
T Consensus 178 ~~~ 180 (481)
T PRK04366 178 AAM 180 (481)
T ss_pred HHH
Confidence 754
No 22
>PLN02651 cysteine desulfurase
Probab=96.76 E-value=0.0096 Score=52.60 Aligned_cols=69 Identities=9% Similarity=0.025 Sum_probs=51.2
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFAL 207 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si 207 (214)
++.+..+-.++-+.+++++|.+++ .-+||+|||+++..++..++....+ +.-.|+++...|+|+
T Consensus 38 ~~~~~~~~~~~r~~la~~~g~~~~-------~v~~t~~~t~a~~~~l~~~~~~~~~---------~g~~vl~~~~~h~s~ 101 (364)
T PLN02651 38 GWESEDAVEKARAQVAALIGADPK-------EIIFTSGATESNNLAIKGVMHFYKD---------KKKHVITTQTEHKCV 101 (364)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC-------eEEEeCCHHHHHHHHHHHHHHhccC---------CCCEEEEcccccHHH
Confidence 344566666778999999998764 5789999999999999887654321 123567799999998
Q ss_pred HHHhh
Q 036996 208 QKSAK 212 (214)
Q Consensus 208 ~KAa~ 212 (214)
.+.+.
T Consensus 102 ~~~~~ 106 (364)
T PLN02651 102 LDSCR 106 (364)
T ss_pred HHHHH
Confidence 76653
No 23
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=96.36 E-value=0.027 Score=50.56 Aligned_cols=104 Identities=13% Similarity=0.038 Sum_probs=64.9
Q ss_pred cceeccCCCChhhhHHHHH---Hhh-cccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHH
Q 036996 96 FFGYFQANASTAGFLGEML---CSG-FNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLV 171 (214)
Q Consensus 96 ~~g~~~~~~~~~~~~~d~l---~~~-~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl 171 (214)
|+-|=.+.+..+.++-.|+ ... -|++. ....+-.+..+=.+.=+++++++|.++. .=+|||||||||-
T Consensus 4 YlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~-------eIiFTSG~TEsnN 75 (386)
T COG1104 4 YLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPE-------EIIFTSGATESNN 75 (386)
T ss_pred cccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCC-------eEEEecCCcHHHH
Confidence 4444434444444443333 222 34443 3333444444444567799999999885 5799999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhcC
Q 036996 172 CTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKLI 214 (214)
Q Consensus 172 ~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~ll 214 (214)
.|++.+-.....+ + ..--|++|..=|.||...|+.+
T Consensus 76 laI~g~~~a~~~~-~------~~~HIIts~iEH~aVl~~~~~L 111 (386)
T COG1104 76 LAIKGAALAYRNA-Q------KGKHIITSAIEHPAVLNTCRYL 111 (386)
T ss_pred HHHHhhHHhhhcc-c------CCCeEEEcccccHHHHHHHHHH
Confidence 9999754333221 1 1224678999999999888753
No 24
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=96.34 E-value=0.033 Score=49.33 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFAL 207 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si 207 (214)
++....+..++-+++++++|.+++ .-+||+|||+++..++....... . ++-+|+++...|+|+
T Consensus 37 ~~~~~~~~~~~r~~la~~~g~~~~-------~i~~t~~~t~a~~~al~~~~~~~----~------~~~~vv~~~~~~~s~ 99 (379)
T TIGR03402 37 GGEVGKAVEEAREQVAKLLGAEPD-------EIIFTSGGTESDNTAIKSALAAQ----P------EKRHIITTAVEHPAV 99 (379)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC-------eEEEeCcHHHHHHHHHHHHHHhc----C------CCCeEEEcccccHHH
Confidence 345566777888999999998754 57899999999999988764421 1 123566788899888
Q ss_pred HHHh
Q 036996 208 QKSA 211 (214)
Q Consensus 208 ~KAa 211 (214)
.+.+
T Consensus 100 ~~~~ 103 (379)
T TIGR03402 100 LSLC 103 (379)
T ss_pred HHHH
Confidence 6554
No 25
>PRK02948 cysteine desulfurase; Provisional
Probab=96.24 E-value=0.027 Score=49.85 Aligned_cols=73 Identities=11% Similarity=0.043 Sum_probs=52.4
Q ss_pred cccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCC
Q 036996 124 NWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQT 203 (214)
Q Consensus 124 ~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~a 203 (214)
.+..+.....+..++-+.+++++|.+++ .-++|+|+|++|..++.+..+... + +.-+|+++...
T Consensus 34 ~~~~~~~~~~~~~~~r~~la~~~g~~~~-------~i~~~~g~t~a~~~~~~~~~~~~~---~------~g~~vv~~~~~ 97 (381)
T PRK02948 34 LHDIGGTASSLLQVCRKTFAEMIGGEEQ-------GIYFTSGGTESNYLAIQSLLNALP---Q------NKKHIITTPME 97 (381)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCC-------eEEEeCcHHHHHHHHHHHHHHhcc---C------CCCEEEECCcc
Confidence 3445555667777888999999998764 568999999999988877654321 1 22356678899
Q ss_pred chHHHHHhh
Q 036996 204 HFALQKSAK 212 (214)
Q Consensus 204 H~Si~KAa~ 212 (214)
|+|+....+
T Consensus 98 h~s~~~~~~ 106 (381)
T PRK02948 98 HASIHSYFQ 106 (381)
T ss_pred cHHHHHHHH
Confidence 999877653
No 26
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=95.95 E-value=0.063 Score=47.03 Aligned_cols=69 Identities=12% Similarity=0.004 Sum_probs=48.9
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFAL 207 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si 207 (214)
+.....+..++-+++++++|.+++ .-+||+|+|+++..++.+.+.... . ..+-.|+++...|.|+
T Consensus 37 ~~~~~~~~~~~r~~la~~~g~~~~-------~v~~~~g~t~a~~~~l~~l~~~~~---~-----~g~~~vi~~~~~~~s~ 101 (353)
T TIGR03235 37 GHNAKKAVERARKQVAEALGADTE-------EVIFTSGATESNNLAILGLARAGE---Q-----KGKKHIITSAIEHPAV 101 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC-------eEEEeCCHHHHHHHHHHHHHHhcc---c-----CCCCeeeEcccccHHH
Confidence 334456677889999999999764 579999999999888766543211 0 0124567788999987
Q ss_pred HHHh
Q 036996 208 QKSA 211 (214)
Q Consensus 208 ~KAa 211 (214)
....
T Consensus 102 ~~~~ 105 (353)
T TIGR03235 102 LEPI 105 (353)
T ss_pred HHHH
Confidence 6654
No 27
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=95.82 E-value=0.06 Score=48.26 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHh
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSA 211 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa 211 (214)
...-.++-+.+++++|.+++ .-+||+|||+++..++...+.... + +.-.|+++...|.|+.+++
T Consensus 46 ~~~~~~~r~~la~~~g~~~~-------~v~~~~g~t~a~~~~l~~l~~~~~---~------~g~~Vi~~~~~h~s~~~~~ 109 (402)
T TIGR02006 46 EEAVENARNQVAELIGADSR-------EIVFTSGATESNNLAIKGIAHFYK---S------KGNHIITSKTEHKAVLDTC 109 (402)
T ss_pred HHHHHHHHHHHHHHhCCCCC-------eEEEeCCHHHHHHHHHHHHHHhhc---C------CCCEEEECCCccHHHHHHH
Confidence 34555667889999998764 579999999999998876653221 1 2235677889999988765
Q ss_pred h
Q 036996 212 K 212 (214)
Q Consensus 212 ~ 212 (214)
.
T Consensus 110 ~ 110 (402)
T TIGR02006 110 R 110 (402)
T ss_pred H
Confidence 3
No 28
>PRK14012 cysteine desulfurase; Provisional
Probab=95.65 E-value=0.094 Score=47.00 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhh
Q 036996 137 IVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAK 212 (214)
Q Consensus 137 ~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~ 212 (214)
++-+++++++|.+++ ..++|+|||+++..++.+.++... + +.-.|+++...|+|+.++++
T Consensus 53 ~~r~~ia~~~g~~~~-------~v~~~~g~t~al~~~l~~l~~~~~---~------~gd~Vi~~~~~~~s~~~~~~ 112 (404)
T PRK14012 53 IARNQIADLIGADPR-------EIVFTSGATESDNLAIKGAAHFYQ---K------KGKHIITSKTEHKAVLDTCR 112 (404)
T ss_pred HHHHHHHHHcCcCcC-------eEEEeCCHHHHHHHHHHHHHHhhc---C------CCCEEEEecCccHHHHHHHH
Confidence 345688999998764 578999999999999877654321 1 11246678899999876653
No 29
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=95.01 E-value=0.21 Score=42.82 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=59.7
Q ss_pred hhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCce
Q 036996 116 SGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKL 195 (214)
Q Consensus 116 ~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~ 195 (214)
...+.+...+...+...++|..+.+++...+|.+... ..-++|+|||+++..++.+... +.-
T Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-----~~~~~~~~~t~a~~~~~~~~~~-------------~g~ 84 (350)
T cd00609 23 AALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPP-----EEIVVTNGAQEALSLLLRALLN-------------PGD 84 (350)
T ss_pred HhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCc-----ceEEEecCcHHHHHHHHHHhCC-------------CCC
Confidence 4555565667777888999999999999998875443 3578899999888777666531 112
Q ss_pred EEEEeCCCchHHHHHhhc
Q 036996 196 AVYASDQTHFALQKSAKL 213 (214)
Q Consensus 196 ~i~~s~~aH~Si~KAa~l 213 (214)
+|+++..+|+++.++++.
T Consensus 85 ~vl~~~~~~~~~~~~~~~ 102 (350)
T cd00609 85 EVLVPDPTYPGYEAAARL 102 (350)
T ss_pred EEEEcCCCchhHHHHHHH
Confidence 467789999999988764
No 30
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=94.55 E-value=0.23 Score=43.68 Aligned_cols=69 Identities=13% Similarity=0.025 Sum_probs=48.9
Q ss_pred cccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCC
Q 036996 124 NWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQT 203 (214)
Q Consensus 124 ~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~a 203 (214)
.+..++...++..++.+++++++|.++.. ..++|+|+|+++..++.+..... . +.-.|++++.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~------~v~~~~g~t~a~~~~~~~l~~~~----~------~g~~vl~~~~~ 97 (373)
T cd06453 34 VHELSARATDAYEAAREKVARFINAPSPD------EIIFTRNTTEAINLVAYGLGRAN----K------PGDEIVTSVME 97 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCC------eEEEeCCHHHHHHHHHHHhhhcC----C------CCCEEEECcch
Confidence 45556777788888999999999987322 57899999999877776653310 0 12246678899
Q ss_pred chHHH
Q 036996 204 HFALQ 208 (214)
Q Consensus 204 H~Si~ 208 (214)
|+|+.
T Consensus 98 ~~~~~ 102 (373)
T cd06453 98 HHSNI 102 (373)
T ss_pred hHHHH
Confidence 98853
No 31
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=94.52 E-value=0.52 Score=41.80 Aligned_cols=121 Identities=10% Similarity=0.074 Sum_probs=62.7
Q ss_pred HHHHHHhHhhcCCCCcCCCC-CcceeccCCCChhhhHHHHHHhh-cccCcccccC--ChhHHHHHHHHHHHHHHHcCCCC
Q 036996 75 DILKDVTDCILPGLTHWQSP-NFFGYFQANASTAGFLGEMLCSG-FNVVGFNWLA--SPVATELESIVMDWMGKMLKLPS 150 (214)
Q Consensus 75 ~il~~l~~~~~~~~~~~~~p-r~~g~~~~~~~~~~~~~d~l~~~-~n~n~~~~~~--sp~~~~iE~~vi~wl~~l~G~p~ 150 (214)
+||+++.+ +........++ -.++-...+..++.++-+..... .+..-..|.. ++...++-.++.+++++++|.+.
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~ 81 (398)
T cd00613 3 EVLRHLKR-LASKNKALDQSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDV 81 (398)
T ss_pred HHHHHHHH-HHhcCcCcccCcccccccccCCcCcHHHHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCc
Confidence 67777666 32111112211 23333333444455554444443 1110011221 45667888999999999999875
Q ss_pred CCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 151 SFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 151 ~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
+ .-+++.+|+.+...++..++-.. + +.-.|++++..|.+...++.+
T Consensus 82 ~-------~v~~~~~g~~~~~~~~~~~~~~~----~------~gd~Vl~~~~~h~~~~~~~~~ 127 (398)
T cd00613 82 A-------NASLQDEATAAAEAAGLAAIRAY----H------KRNKVLVPDSAHPTNPAVART 127 (398)
T ss_pred c-------ceeccCchHHHHHHHHHHHHhcc----c------CCCEEEEcCccCcchHHHHHH
Confidence 3 23456655545555555554221 0 112456788888888776643
No 32
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=94.43 E-value=0.16 Score=46.17 Aligned_cols=105 Identities=17% Similarity=0.110 Sum_probs=67.0
Q ss_pred cCCCCCcceeccCCCChhhhHHHHHHhhccc--CcccccCChhH---HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecC
Q 036996 90 HWQSPNFFGYFQANASTAGFLGEMLCSGFNV--VGFNWLASPVA---TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHG 164 (214)
Q Consensus 90 ~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~--n~~~~~~sp~~---~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~ts 164 (214)
+-..|-|+..-.+++-++.++-.++.-..+- |.... +++- ..+|. .=..+++|+|-+++ +=+||+
T Consensus 40 ~~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~--~y~w~~~~~~E~-aR~~VAklInAd~~-------dIiFts 109 (428)
T KOG1549|consen 40 HGTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSR--SYGWKAEDAVEA-AREQVAKLINADPS-------DIVFTS 109 (428)
T ss_pred CCCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCcc--ccchhhhHHHHH-HHHHHHHHhCCCCC-------cEEEeC
Confidence 4567788888888888887775554333222 22222 2321 12332 23478999999886 579999
Q ss_pred CchHHHHHHHH-HHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 165 STCESLVCTLA-AARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 165 GGt~aNl~Al~-aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
|+|+||=+.+. .+|... + + .++ .|++.+..|.|+.++++-
T Consensus 110 ~ATEs~Nlvl~~v~~~~~--~-~-----~~k-~iitl~~eH~~v~~s~~~ 150 (428)
T KOG1549|consen 110 GATESNNLVLKGVARFFG--D-K-----TKK-HIITLQTEHPCVLDSCRA 150 (428)
T ss_pred CchHHHHHHHHHhhcccc--c-c-----ccc-eEEEecccCcchhHHHHH
Confidence 99999987765 232221 1 1 122 677899999999999864
No 33
>PRK07179 hypothetical protein; Provisional
Probab=92.80 E-value=0.65 Score=41.61 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=54.7
Q ss_pred cCCCCCcceeccCCCChhhhHHHHHHhhcccCc-ccccC--ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCc
Q 036996 90 HWQSPNFFGYFQANASTAGFLGEMLCSGFNVVG-FNWLA--SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGST 166 (214)
Q Consensus 90 ~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~-~~~~~--sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGG 166 (214)
.+.+-+|+|... .|.....+.+.+....+... ..+-. .+...++|+ .+++++|.++ .++|+||
T Consensus 58 ~~~~~~YL~l~~-~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~----~la~~~g~~~---------~~~~~sG 123 (407)
T PRK07179 58 ILQSNDYLNLSG-HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEK----KLAAFTGFES---------CLLCQSG 123 (407)
T ss_pred EeecCCccCCCC-CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHH----HHHHHhCCCc---------EEEECCH
Confidence 344556666652 23344444444443322211 11221 245566775 5666677643 4899999
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhh
Q 036996 167 CESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAK 212 (214)
Q Consensus 167 t~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~ 212 (214)
++||..++.+... +.-.++++...|+|+..+++
T Consensus 124 ~~An~~~l~~l~~-------------~g~~v~~~~~~h~s~~~~~~ 156 (407)
T PRK07179 124 WAANVGLLQTIAD-------------PNTPVYIDFFAHMSLWEGVR 156 (407)
T ss_pred HHHHHHHHHHhCC-------------CCCEEEEECCcCHHHHHHHH
Confidence 9999888765421 11245678999999977654
No 34
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=92.55 E-value=0.51 Score=43.03 Aligned_cols=111 Identities=13% Similarity=0.100 Sum_probs=63.6
Q ss_pred HHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHHhhcccCcccccCC-----------hhHHHHHHHHHHHHHHH
Q 036996 77 LKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLAS-----------PVATELESIVMDWMGKM 145 (214)
Q Consensus 77 l~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~s-----------p~~~~iE~~vi~wl~~l 145 (214)
++.+.++...+...|+-|..-+ +......-++..+..++..|...++.| |-..- ++.-+.++++
T Consensus 4 ~~aL~~y~~~~~~~fh~PGHk~---G~~~~~~p~g~~~~~f~G~~~~~~Dl~te~~~lD~L~~p~G~I--~eAe~~aA~~ 78 (417)
T PF01276_consen 4 FEALKKYAEEGPYSFHMPGHKG---GRGFDKSPAGRLFYDFFGENLFRADLSTEVPGLDDLHDPEGII--KEAEELAARA 78 (417)
T ss_dssp HHHHHHHHHTT-EESSSSTTTT---TTCGGGSHHHHHHHHHH-HHHHHT---TTSTTCBBTTTTBTHH--HHHHHHHHHH
T ss_pred HHHHHHHHhCCCceeecCccCC---CCCCCcchHHHHHHHHHhhHHHHHHHhhcccccCcccCCccHH--HHHHHHHHHh
Confidence 3445555555556666555443 222233334555555555444434332 22222 2334678999
Q ss_pred cCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 146 LKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 146 ~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
+|-+.++ ++|.|+|.+|..++.++-+ +.=.|++...+|=||..|+.+
T Consensus 79 fGAd~t~--------flvnGsT~g~~a~i~a~~~-------------~gd~VLv~RN~HkSv~~alil 125 (417)
T PF01276_consen 79 FGADKTF--------FLVNGSTSGNQAMIMALCR-------------PGDKVLVDRNCHKSVYNALIL 125 (417)
T ss_dssp HTESEEE--------EESSHHHHHHHHHHHHHTT-------------TTCEEEEETT--HHHHHHHHH
T ss_pred cCCCeEE--------EEecCchHHHHHHHHHhcC-------------CCCEEEEcCCcHHHHHHHHHH
Confidence 9998875 7899999999999888732 112467899999999998754
No 35
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=91.89 E-value=0.99 Score=39.32 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=35.2
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 127 ASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 127 ~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
.+|...++..++.+++++++|.++.. ..++|++||+++..++.+
T Consensus 26 ~~~~~~~~~~~~~~~la~~~g~~~~~------~~~~~~~~t~al~~~~~~ 69 (356)
T cd06451 26 RSPEFLALMDEILEGLRYVFQTENGL------TFLLSGSGTGAMEAALSN 69 (356)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCC------EEEEecCcHHHHHHHHHH
Confidence 46777788889999999999996532 478999999998877754
No 36
>PRK12566 glycine dehydrogenase; Provisional
Probab=91.70 E-value=1.4 Score=44.10 Aligned_cols=123 Identities=11% Similarity=-0.005 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHhHhhcCCCCcCCCCCccee--c-cCC--CChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHH
Q 036996 69 SPESLDDILKDVTDCILPGLTHWQSPNFFGY--F-QAN--ASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMG 143 (214)
Q Consensus 69 ~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~--~-~~~--~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~ 143 (214)
.+.+..|+++.+++.-.++..-..+..|.|- | +++ -..+.--.++.+. .+. ...+.+-+.-++=.+.-+|+|
T Consensus 477 ~~~SE~el~r~~~~La~kn~~~~~~~~~LGsCTmK~n~~~~~~p~s~~eF~t~--hPy-qp~e~sQG~lq~i~elq~~l~ 553 (954)
T PRK12566 477 AHHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATSEMIPITWPEFAQL--HPF-APREQAEGYRAMIDELEAWLC 553 (954)
T ss_pred cCCCHHHHHHHHHHHHhcCcCcccCcccCcccccCcCcHHhhhcccchhhhcC--CCC-CchhhhcCHHHHHHHHHHHHH
Confidence 4578889999998855544322233445554 0 000 0111122333333 221 122556555555455558999
Q ss_pred HHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHH
Q 036996 144 KMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFAL 207 (214)
Q Consensus 144 ~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si 207 (214)
++.|++.. -+--.+|+.+++.+|++.|.+...+ |. ..+-++++|+.+|.+.
T Consensus 554 eLtGmd~~--------Sl~p~sGA~gE~A~Lmair~yh~~~-Ge----~~r~~vLIp~saHgtN 604 (954)
T PRK12566 554 AITGFDAI--------CMQPNSGAQGEYAGLLAIRRYHRSR-GQ----SQRDICLIPSSAHGTN 604 (954)
T ss_pred HHHCCCeE--------eecCCchHHHHHHHHHHHHHHHHhc-CC----CCCCEEEecccccccC
Confidence 99999862 2333478999999999998765432 32 1245567899999553
No 37
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=91.45 E-value=0.96 Score=39.18 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=44.0
Q ss_pred cccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCC
Q 036996 124 NWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQT 203 (214)
Q Consensus 124 ~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~a 203 (214)
.|...|...++|.. +++++|.+. .+|+++||++|..++.+.-. |.-.++|.+.+
T Consensus 24 ~Yg~D~~~~~l~~~----i~~l~g~e~---------a~f~~sGT~An~~al~~~~~-------------~~~~vi~~~~a 77 (290)
T PF01212_consen 24 AYGEDPTTARLEER----IAELFGKEA---------ALFVPSGTMANQLALRAHLR-------------PGESVICADTA 77 (290)
T ss_dssp CTTSSHHHHHHHHH----HHHHHTSSE---------EEEESSHHHHHHHHHHHHHH-------------TTEEEEEETTE
T ss_pred ccCCChhHHHHHHH----HHHHcCCCE---------EEEeCCCChHHHHHHHHHHh-------------cCCceeccccc
Confidence 57888888877765 567888874 47999999999999977752 22355678888
Q ss_pred chHHH
Q 036996 204 HFALQ 208 (214)
Q Consensus 204 H~Si~ 208 (214)
|..+.
T Consensus 78 Hi~~~ 82 (290)
T PF01212_consen 78 HIHFD 82 (290)
T ss_dssp HHHHS
T ss_pred eeeee
Confidence 87653
No 38
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=91.20 E-value=0.51 Score=35.75 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHH
Q 036996 137 IVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQ 208 (214)
Q Consensus 137 ~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~ 208 (214)
++-++++++++.+.. ..++++|||+++..++.+++.. + -.++++...|++..
T Consensus 4 ~~~~~l~~~~~~~~~-------~~~~~~~~t~a~~~~~~~~~~~-----~--------~~v~~~~~~~~~~~ 55 (170)
T cd01494 4 ELEEKLARLLQPGND-------KAVFVPSGTGANEAALLALLGP-----G--------DEVIVDANGHGSRY 55 (170)
T ss_pred HHHHHHHHHcCCCCC-------cEEEeCCcHHHHHHHHHHhCCC-----C--------CEEEEeecccceeh
Confidence 456788899863222 6899999999999999887531 1 13556667777666
No 39
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=90.30 E-value=1.2 Score=39.76 Aligned_cols=55 Identities=9% Similarity=0.030 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 137 IVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 137 ~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
+.-+.+++++|.++ .++|+|||++|..++.+.. . +.-.|+++...|+|+..+++.
T Consensus 67 ~l~~~lA~~~g~~~---------~~~~~g~t~a~~~al~~l~-------~------~gd~Vlv~~~~h~s~~~~~~~ 121 (387)
T PRK09331 67 DFHEDLAEFLGMDE---------ARVTHGAREGKFAVMHSLC-------K------KGDYVVLDGLAHYTSYVAAER 121 (387)
T ss_pred HHHHHHHHHhCCCc---------EEEeCCHHHHHHHHHHHhc-------C------CCCEEEECCCchHHHHHHHHH
Confidence 33445666677753 4689999999988776541 1 112456789999999887653
No 40
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=90.16 E-value=1.8 Score=37.11 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 138 VMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 138 vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
.-+-+++++|-++. =++|+|+|.+|..++.+.. + +.-.|+++..+|.|+..++.+
T Consensus 64 ~~~~~A~~~ga~~~--------~~~~~Gst~a~~~~l~al~-------~------~gd~Vlv~~~~h~s~~~~~~~ 118 (294)
T cd00615 64 AQELAARAFGAKHT--------FFLVNGTSSSNKAVILAVC-------G------PGDKILIDRNCHKSVINGLVL 118 (294)
T ss_pred HHHHHHHHhCCCCE--------EEEcCcHHHHHHHHHHHcC-------C------CCCEEEEeCCchHHHHHHHHH
Confidence 34456777886542 3459999999988876541 1 112456788999999888764
No 41
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=90.10 E-value=1.3 Score=39.32 Aligned_cols=42 Identities=14% Similarity=0.031 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
...+.++.+.+++++|.+.+ .-+|++|||++|..|+.++|..
T Consensus 78 ~~~~~~l~~~l~~~~~~~~~-------~v~~~~sgsea~~~al~~~~~~ 119 (413)
T cd00610 78 NEPAVELAELLLALTPEGLD-------KVFFVNSGTEAVEAALKLARAY 119 (413)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEcCcHHHHHHHHHHHHHHH
Confidence 56777788888888874332 4789999999999999999864
No 42
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=90.07 E-value=2 Score=38.25 Aligned_cols=66 Identities=24% Similarity=0.114 Sum_probs=41.6
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFAL 207 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si 207 (214)
++.....-.++-+.+++++|.++.. .-++|+|+|+++...+.+...... . +.-.|++++..|.|.
T Consensus 57 ~~~~~~~~~~~r~~ia~~~~~~~~~------~v~~~~g~t~~l~~~~~~~~~~~~---~------~g~~vl~~~~~~~s~ 121 (403)
T TIGR01979 57 SVRATEAYEAVREKVAKFINAASDE------EIVFTRGTTESINLVAYSWGDSNL---K------AGDEIVISEMEHHAN 121 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCC------eEEEeCCHHHHHHHHHHHhhhhcC---C------CCCEEEECcchhhHH
Confidence 3444445557778899999997321 578999999986655544322111 1 122566788888875
Q ss_pred H
Q 036996 208 Q 208 (214)
Q Consensus 208 ~ 208 (214)
.
T Consensus 122 ~ 122 (403)
T TIGR01979 122 I 122 (403)
T ss_pred H
Confidence 3
No 43
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=89.93 E-value=0.87 Score=40.34 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=50.6
Q ss_pred hhHHHHHHhhcccC---cccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHH
Q 036996 108 GFLGEMLCSGFNVV---GFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEK 184 (214)
Q Consensus 108 ~~~~d~l~~~~n~n---~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~ 184 (214)
+...+++....+.| -..|...|....+|+ ++++++|. . ..+|+++||++|..||.+.-+
T Consensus 11 g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~----~~ae~~g~-~--------a~~Fv~sGT~aN~lal~~~~~----- 72 (342)
T COG2008 11 GPTPEMREALAAANAVGDDVYGEDPTTNALEQ----RIAELFGK-E--------AALFVPSGTQANQLALAAHCQ----- 72 (342)
T ss_pred CCCHHHHHHHHhccccCCCCCCCCHHHHHHHH----HHHHHhCC-c--------eEEEecCccHHHHHHHHHhcC-----
Confidence 33445566666555 245666777666655 68889988 4 479999999999999887642
Q ss_pred hCCCCCCCCceEEEEeCCCchHHH
Q 036996 185 LGGGFDNITKLAVYASDQTHFALQ 208 (214)
Q Consensus 185 ~~~g~~~~~~~~i~~s~~aH~Si~ 208 (214)
|--.++|-+++|...+
T Consensus 73 --------~~~~vi~~~~aHi~~~ 88 (342)
T COG2008 73 --------PGESVICHETAHIYTD 88 (342)
T ss_pred --------CCCeEEEeccccceec
Confidence 2224567788886544
No 44
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=89.60 E-value=1.8 Score=39.02 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
++.|.++.+++++..+++ .-+|+++||+||..|+++||.+.
T Consensus 77 ~~~~~~la~~l~~~~~~~---------~v~f~~SGseA~e~Aik~ar~~~ 117 (395)
T PRK03715 77 NEPMAKLAGLLTQHSCFD---------KVFFANSGAEANEGAIKLARKWG 117 (395)
T ss_pred CHHHHHHHHHHhhccCCC---------EEEEeCCcHHHHHHHHHHHHHHh
Confidence 567778888888765432 35899999999999999999763
No 45
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=88.14 E-value=0.55 Score=40.45 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHH
Q 036996 136 SIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQK 209 (214)
Q Consensus 136 ~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~K 209 (214)
.++.+++++++| ++ ..++|+|||++|..++.+..+ +.-.|+++..+|+++.+
T Consensus 35 ~~l~~~~a~~~g-~~--------~~~~~~~gt~a~~~~~~~l~~-------------~gd~v~~~~~~~~~~~~ 86 (338)
T cd06502 35 AKLEARAAELFG-KE--------AALFVPSGTAANQLALAAHTQ-------------PGGSVICHETAHIYTDE 86 (338)
T ss_pred HHHHHHHHHHhC-CC--------eEEEecCchHHHHHHHHHhcC-------------CCCeEEEecCcceeeec
Confidence 344568888888 43 589999999998887765321 11235578888887654
No 46
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=87.96 E-value=2.9 Score=37.45 Aligned_cols=23 Identities=30% Similarity=0.203 Sum_probs=20.5
Q ss_pred ceecCCchHHHHHHHHHHHHHHH
Q 036996 160 GVLHGSTCESLVCTLAAARDKAL 182 (214)
Q Consensus 160 G~~tsGGt~aNl~Al~aAR~~~~ 182 (214)
-.|+++||+||..|+++||.+..
T Consensus 95 ~~f~~SGseA~e~Alk~ar~~~~ 117 (397)
T TIGR03246 95 VFFCNSGAEANEAALKLARRYAL 117 (397)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHH
Confidence 57999999999999999998753
No 47
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=87.23 E-value=4.6 Score=35.97 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
.+...++|++ +++++|.+ ..+++++||+||..||++||...
T Consensus 82 ~~~~~~l~~~----l~~~~~~~---------~~~~~~SGs~A~e~al~~a~~~~ 122 (401)
T PRK00854 82 NDQLAPLYEE----LAALTGSH---------KVLPMNSGAEAVETAIKAVRKWG 122 (401)
T ss_pred CHHHHHHHHH----HHhhCCCC---------EEEEeCCcHHHHHHHHHHHHHHH
Confidence 3444455554 45556643 36899999999999999999864
No 48
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=86.72 E-value=0.84 Score=39.92 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=34.5
Q ss_pred ccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHH
Q 036996 123 FNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARD 179 (214)
Q Consensus 123 ~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~ 179 (214)
..|..-|-..++|++|-+ |+|=. .|.|++.||++|+.|+++.-+
T Consensus 50 dVyGeD~tt~rLE~~vA~----l~GKE---------AgLFv~SGTmgNllaIm~Hc~ 93 (384)
T KOG1368|consen 50 DVYGEDPTTNRLEQRVAE----LFGKE---------AGLFVPSGTMGNLLAIMVHCH 93 (384)
T ss_pred ccccCCccHHHHHHHHHH----HhCcc---------ceeeecccccccHHHHHHHhc
Confidence 357778889999998755 45432 489999999999999988754
No 49
>PRK12403 putative aminotransferase; Provisional
Probab=86.39 E-value=4.1 Score=37.53 Aligned_cols=42 Identities=12% Similarity=-0.024 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+.|+++++-+-+ .-.|+++||+||-.|+++||.+.
T Consensus 98 ~~~~~lae~L~~~~p~~~~-------~v~f~~SGseA~e~AiklAr~~~ 139 (460)
T PRK12403 98 PAVIELSELLFSLLPGHYS-------HAIYTNSGSEANEVLIRTVRRYW 139 (460)
T ss_pred HHHHHHHHHHHHhCCCCcC-------EEEEeCCcHHHHHHHHHHHHHHH
Confidence 3445556667777652211 46899999999999999999874
No 50
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=85.75 E-value=15 Score=33.75 Aligned_cols=136 Identities=9% Similarity=0.040 Sum_probs=64.6
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHH---hhcccC-cccccCChh
Q 036996 55 PGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLC---SGFNVV-GFNWLASPV 130 (214)
Q Consensus 55 ~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~---~~~n~n-~~~~~~sp~ 130 (214)
|++++-.-+..+|+. .+..|+++.+.+...++.. ...|.|-=...-..++++-.-+. .++... +.-.+.|-+
T Consensus 32 P~~i~~~~~~~lp~~-~sE~e~~r~~~~la~kN~~---~~~fiG~G~y~~~~P~~i~~~i~~~~ef~TaYtPYQpEisQG 107 (429)
T PF02347_consen 32 PEEIRLKKPLNLPEP-LSEYELLRHLERLASKNKS---YTSFIGAGSYTHYVPAVIDRNILSRPEFYTAYTPYQPEISQG 107 (429)
T ss_dssp -GGG-SS-----------HHHHHHHHHHHHTTS-----TTS---CTTT-----HHHHH-HHCCHHCCCS-STTSGGGBHH
T ss_pred CHhhcCCCCCCCCCC-CCHHHHHHHHHHHHhcCCC---CCccccccccCceeChhhcCccccChhhhccCCCCCcHHHHH
Confidence 455544334566654 7788999999986654432 33444433333344566555222 222221 112355666
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHH
Q 036996 131 ATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKS 210 (214)
Q Consensus 131 ~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KA 210 (214)
.-++=-+.-.++++|.|+|-. .--+..|+| |--.|++.|.+...+ ++-++++|+..|......
T Consensus 108 ~Lq~lfe~Qs~i~eLTGmdva-------NaSlyd~at-A~aEa~~ma~r~~~~---------~~~~vlv~~~~hP~~~~v 170 (429)
T PF02347_consen 108 RLQALFEYQSMICELTGMDVA-------NASLYDGAT-AAAEAMLMAVRATKR---------KRNKVLVPESLHPQTRAV 170 (429)
T ss_dssp HHHHHHHHHHHHHHHHTSSEE--------SEBSSCCH-HHHHHHHHHHHHHTT------------EEEEETTS-CHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCcc-------CCCCCChhH-HHHHHHHHHHHhccc---------CCcEEEEcCCcChhhHHH
Confidence 666666778899999999863 223555555 555566666543211 123567899999887654
Q ss_pred h
Q 036996 211 A 211 (214)
Q Consensus 211 a 211 (214)
+
T Consensus 171 ~ 171 (429)
T PF02347_consen 171 L 171 (429)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=85.58 E-value=2 Score=39.26 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 131 ATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 131 ~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
.+++|-++-+.++++++.=+ .=-|++.||||++.|+.+||-..
T Consensus 91 Pte~Ei~~Aell~~~~p~~e--------~vrfvnSGTEAtmsAiRlARa~T 133 (432)
T COG0001 91 PTELEVELAELLIERVPSIE--------KVRFVNSGTEATMSAIRLARAYT 133 (432)
T ss_pred CCHHHHHHHHHHHHhcCccc--------EEEEecchhHHHHHHHHHHHHhh
Confidence 36788899999999997644 24588999999999999999875
No 52
>PRK15029 arginine decarboxylase; Provisional
Probab=85.52 E-value=6.3 Score=38.79 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=40.8
Q ss_pred HHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 139 MDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 139 i~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
-+..+++||-+.++ ++|.|.|.+|+.++.++-. .| + .|++...+|=|+..|+.+
T Consensus 211 q~~aA~~fgA~~t~--------FlvNGST~gn~a~i~a~~~-----~g-------d-~Vlv~RN~HKSv~~al~L 264 (755)
T PRK15029 211 EKYAARVFGADRSW--------SVVVGTSGSNRTIMQACMT-----DN-------D-VVVVDRNCHKSIEQGLIL 264 (755)
T ss_pred HHHHHHHhCCCcEE--------EEeCChhHHHHHHHHHhcC-----CC-------C-EEEeecccHHHHHHHHHH
Confidence 46789999998865 7899999999976665421 11 2 456899999999988765
No 53
>PRK09082 methionine aminotransferase; Validated
Probab=85.49 E-value=7.2 Score=34.60 Aligned_cols=84 Identities=11% Similarity=0.039 Sum_probs=50.2
Q ss_pred HHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCC
Q 036996 112 EMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDN 191 (214)
Q Consensus 112 d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~ 191 (214)
+.+...+......|........+++.+.+|+.+++|.+.+. ...-++|+|||+++..++.+-. . .+
T Consensus 50 ~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~----~~~i~~t~G~~~al~~~~~~~~----~-~g----- 115 (386)
T PRK09082 50 EALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDA----DSEITVTAGATEALFAAILALV----R-PG----- 115 (386)
T ss_pred HHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC----CCcEEEeCCHHHHHHHHHHHHc----C-CC-----
Confidence 44444443322234344456789999999999999875321 0147889999999887765431 1 11
Q ss_pred CCceEEEEeCCCchHHHHHhh
Q 036996 192 ITKLAVYASDQTHFALQKSAK 212 (214)
Q Consensus 192 ~~~~~i~~s~~aH~Si~KAa~ 212 (214)
-.|++..-+|.++.++++
T Consensus 116 ---d~Vli~~p~y~~~~~~~~ 133 (386)
T PRK09082 116 ---DEVIVFDPSYDSYAPAIE 133 (386)
T ss_pred ---CEEEEeCCCchhhHHHHH
Confidence 124455666666665554
No 54
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=85.40 E-value=5.3 Score=35.75 Aligned_cols=58 Identities=12% Similarity=-0.036 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHH
Q 036996 137 IVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFAL 207 (214)
Q Consensus 137 ~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si 207 (214)
++.+.|+++.+.+ .-.|+++||+||..|+.+||.+...+.+. .++-+++....-|=+.
T Consensus 86 ~l~~~l~~~~~~~---------~~~~~~sGseA~e~a~klar~~~~~~~~~----~~~~ii~~~~~~HG~~ 143 (403)
T PRK05093 86 RLAKKLIDATFAE---------RVFFANSGAEANEAAFKLARRYACDRHGP----EKTEIIAFHNSFHGRT 143 (403)
T ss_pred HHHHHHHhhCCCC---------EEEEeCchHHHHHHHHHHHHHHHhhcCCC----CCCeEEEEcCCcCCch
Confidence 4445555655442 35788999999999999999886432111 1234444555555543
No 55
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=84.93 E-value=3.2 Score=36.64 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
..++.++-+++++..+.+ .-+|+++|++||..|+.+||..
T Consensus 70 ~~~~~~la~~l~~~~~~~---------~~~~~~sG~~a~~~A~~~a~~~ 109 (377)
T PRK02936 70 NSLQEEVASLLAENSAGD---------LVFFCNSGAEANEAALKLARKH 109 (377)
T ss_pred CHHHHHHHHHHHhcCCCC---------EEEEeCCcHHHHHHHHHHHHHh
Confidence 567778888888876542 3589999999999999999865
No 56
>PRK08361 aspartate aminotransferase; Provisional
Probab=84.90 E-value=7 Score=34.71 Aligned_cols=64 Identities=8% Similarity=0.096 Sum_probs=42.2
Q ss_pred hhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 108 GFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 108 ~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
..+.+.+...+......|...+....+++.+.+|+.+.+|.+-+. ..-++|+||++++..++.+
T Consensus 49 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-----~~i~~t~G~~~al~~~~~~ 112 (391)
T PRK08361 49 KNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDV-----DNVIVTAGAYEATYLAFES 112 (391)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCc-----ccEEEeCChHHHHHHHHHH
Confidence 445555555554433334445566789999999998887753221 2568999999998877654
No 57
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=84.50 E-value=7.2 Score=34.09 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQK 209 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~K 209 (214)
...-.++.+++++++|.++.. .-++|+|+|+++..++.+ ..+ +.-.|+++...|.++..
T Consensus 43 ~~~~~~~~~~la~~~~~~~~~------~v~~~~g~t~al~~~~~~----~~~---------~gd~vl~~~~~~~~~~~ 101 (376)
T TIGR01977 43 SREVEETRQLLAKLFNAPSSA------HVVFTNNATTALNIALKG----LLK---------EGDHVITTPMEHNSVAR 101 (376)
T ss_pred HHHHHHHHHHHHHHhCcCCCC------eEEEeCCHHHHHHHHHHh----ccC---------CCCEEEECcchhhHHHH
Confidence 355667788999999987532 468999999888776543 111 11245567778887643
No 58
>PLN02721 threonine aldolase
Probab=84.34 E-value=3.5 Score=35.63 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=39.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCc
Q 036996 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTH 204 (214)
Q Consensus 125 ~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH 204 (214)
+...|...++|..+.+|+ |.+ .++++++||++|+.++.+..+. .+ -.|++++.+|
T Consensus 36 ~~~~~~~~~l~~~la~~~----~~~---------~~~~~~~Gs~a~~~~l~~~~~~----~g--------d~Vl~~~~~~ 90 (353)
T PLN02721 36 LGYDPTALRLEEEMAKIF----GKE---------AALFVPSGTMGNLISVLVHCDV----RG--------SEVILGDNSH 90 (353)
T ss_pred cCCCHHHHHHHHHHHHHh----CCc---------eeEEecCccHHHHHHHHHHccC----CC--------CeEEEcCccc
Confidence 344666777887765554 443 3688889999999887764211 11 1356688899
Q ss_pred hHHHH
Q 036996 205 FALQK 209 (214)
Q Consensus 205 ~Si~K 209 (214)
+++.+
T Consensus 91 ~~~~~ 95 (353)
T PLN02721 91 IHLYE 95 (353)
T ss_pred eehhc
Confidence 88876
No 59
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=84.33 E-value=6.8 Score=38.27 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=40.4
Q ss_pred HHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 140 DWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 140 ~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
+..++.||-+.++ ++|.|+|.+|..++.++-. . .+ .|++...+|=|+..|+.+
T Consensus 202 ~~aA~~fgAd~ty--------fvvNGTS~~n~av~~a~~~-----~-------Gd-~VLvdRN~HKSv~~aLil 254 (713)
T PRK15399 202 EYIARTFGAEQSY--------IVTNGTSTSNKIVGMYAAP-----A-------GS-TLLIDRNCHKSLAHLLMM 254 (713)
T ss_pred HHHHHHhCCCcEE--------EEeCChHHHHHHHHHHhcC-----C-------CC-EEEeecccHHHHHHHHHH
Confidence 4579999998875 7899999999998887621 1 12 456799999999887654
No 60
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=84.33 E-value=7.6 Score=34.46 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.0
Q ss_pred CceecCCchHHHHHHHHHHHHHHH
Q 036996 159 GGVLHGSTCESLVCTLAAARDKAL 182 (214)
Q Consensus 159 ~G~~tsGGt~aNl~Al~aAR~~~~ 182 (214)
.-+|+++||+||..|+++||.+..
T Consensus 90 ~v~~~~sGseA~~~al~~ar~~~~ 113 (389)
T PRK01278 90 KVFFTNSGAEAVECAIKTARRYHY 113 (389)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHH
Confidence 368999999999999999998743
No 61
>PRK06917 hypothetical protein; Provisional
Probab=84.02 E-value=5.9 Score=36.32 Aligned_cols=43 Identities=9% Similarity=-0.034 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
++.+.++.+.|++++..+.+ .-.|+++||+||-.|+++||.+.
T Consensus 73 ~~~~~~lae~L~~~~p~~~~-------~v~f~~sGsEAve~AlklAr~~~ 115 (447)
T PRK06917 73 SEPAEKLAKKLSDLSPGDLN-------WSFFVNSGSEANETAMKIAIQHF 115 (447)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEeCChHHHHHHHHHHHHHHH
Confidence 34556777888887743222 46899999999999999999875
No 62
>PRK07046 aminotransferase; Validated
Probab=83.97 E-value=1.4 Score=40.59 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
+..|.++.+.++++++++ .-.|+++|||||..|+++||.+.
T Consensus 114 ~~~~~~lAe~l~~~~~~~---------~v~F~nSGtEA~e~AlrlAR~~T 154 (453)
T PRK07046 114 SEDAAWVGEELARRFGLP---------YWQVATTATDANRFVLRWARAVT 154 (453)
T ss_pred CHHHHHHHHHHHHHhCCC---------EEEEECCHHHHHHHHHHHHHHhh
Confidence 467778888888888543 34799999999999999999874
No 63
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=83.84 E-value=6.4 Score=33.89 Aligned_cols=55 Identities=7% Similarity=0.087 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhh
Q 036996 136 SIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAK 212 (214)
Q Consensus 136 ~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~ 212 (214)
.++-+++++++|.++ .+++++||++|+.++.+.. +.| + .|.+++..|+++..+++
T Consensus 49 ~~l~~~la~~~~~~~---------~iv~~sg~~a~~~~~~~~~-----~~g-------d-~Vl~~~~~~~~~~~~~~ 103 (349)
T cd06454 49 EELEEELAEFHGKEA---------ALVFSSGYAANDGVLSTLA-----GKG-------D-LIISDSLNHASIIDGIR 103 (349)
T ss_pred HHHHHHHHHHhCCCC---------EEEeccHHHHHHHHHHHhc-----CCC-------C-EEEEehhhhHHHHHHHH
Confidence 344456666777642 4788888888887765442 111 2 34567788988877654
No 64
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=83.67 E-value=3.9 Score=35.86 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=39.8
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchH
Q 036996 127 ASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFA 206 (214)
Q Consensus 127 ~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~S 206 (214)
..|...++| +.+++++|. + .-++|+|||+++..++.+.. + +.-.|+++..+|++
T Consensus 42 ~~~~~~~l~----~~la~~~g~-~--------~i~~~~g~t~al~~~l~~~~-------~------~gd~Vl~~~~~~~~ 95 (361)
T cd06452 42 EKPPIKDFH----HDLAEFLGM-D--------EARVTPGAREGKFAVMHSLC-------E------KGDWVVVDGLAHYT 95 (361)
T ss_pred cCchHHHHH----HHHHHHcCC-c--------eEEEeCCHHHHHHHHHHHhc-------C------CCCEEEEcCCcchH
Confidence 345444444 456777887 3 36799999999888775531 1 11135567889999
Q ss_pred HHHHhhc
Q 036996 207 LQKSAKL 213 (214)
Q Consensus 207 i~KAa~l 213 (214)
..++++.
T Consensus 96 ~~~~~~~ 102 (361)
T cd06452 96 SYVAAER 102 (361)
T ss_pred HHHHHHh
Confidence 9877653
No 65
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=83.33 E-value=6.2 Score=35.25 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHH
Q 036996 136 SIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALE 183 (214)
Q Consensus 136 ~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~ 183 (214)
.++-+.+++++|++. -+|++.|++||..|+.+||.+..+
T Consensus 82 ~~l~~~l~~~~~~~~---------~~~~~SGs~A~e~ai~~a~~~~~~ 120 (401)
T TIGR01885 82 GEFAEYVTKLFGYDK---------VLPMNTGAEAVETAIKLARKWGYK 120 (401)
T ss_pred HHHHHHHHhhcCCCE---------EEEeCccHHHHHHHHHHHHHHhhh
Confidence 334445555667642 478899999999999999997543
No 66
>PRK06108 aspartate aminotransferase; Provisional
Probab=83.19 E-value=9.4 Score=33.50 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=39.8
Q ss_pred hHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 109 FLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 109 ~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
.+.+.+...+......|...+....+.+.+.+|+.+.+|.+-+. ..=++|+||++++..++.+.
T Consensus 41 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~-----~~i~~t~g~~~al~~~~~~l 104 (382)
T PRK06108 41 FIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPP-----ERIAVTSSGVQALMLAAQAL 104 (382)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCc-----ceEEEeCChHHHHHHHHHHh
Confidence 34444444443332234444566788999999999998843221 14578899998877765543
No 67
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=82.80 E-value=24 Score=35.94 Aligned_cols=129 Identities=9% Similarity=-0.004 Sum_probs=67.3
Q ss_pred CCCCC--CCCCCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHHhhcc--cCcccc--cCChhHHHHHH
Q 036996 63 PDTAP--HSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFN--VVGFNW--LASPVATELES 136 (214)
Q Consensus 63 ~~~lP--~~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n--~n~~~~--~~sp~~~~iE~ 136 (214)
+..+| ..+.+..|+++.+++.-.++.. +..|.|-=+-+...+.++-+.+.+... +.-..| +.|...-+.=.
T Consensus 75 ~l~lp~~~~~~sE~e~~~~~~~la~kN~~---~~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~ 151 (993)
T PLN02414 75 SMKLSKYDEGLTESQMLEHMKSLASKNKV---FKSYIGMGYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLL 151 (993)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCc---cccccCCCCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHH
Confidence 34566 2577889999999986554322 222222111111233444233322221 111112 33444333334
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHh
Q 036996 137 IVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSA 211 (214)
Q Consensus 137 ~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa 211 (214)
+.=.++++|.|++.+ .-.++.++|.+ ..|+..|..... + ++-+|++++..|.+....+
T Consensus 152 ~~Qt~ia~LtG~~~a-------naSL~d~aTAa-aea~~~a~~~~~---g------~~~~VlVs~~~hP~~~~v~ 209 (993)
T PLN02414 152 NYQTMITDLTGLPMS-------NASLLDEGTAA-AEAMAMCNNILK---G------KKKKFLIASNCHPQTIDVC 209 (993)
T ss_pred HHHHHHHHHhCCChh-------hEeecCChHHH-HHHHHHHHhccc---C------CCCEEEEcCccCHhHHHHH
Confidence 455689999999864 45677777743 334444443211 1 2335678999999876544
No 68
>PRK05965 hypothetical protein; Provisional
Probab=82.02 E-value=3.8 Score=37.69 Aligned_cols=42 Identities=7% Similarity=-0.059 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+-|++++. .+. ..-.|+++||+||-.||++||.+.
T Consensus 90 ~~~~~lae~L~~~~p--~~~-----~~v~f~~sGSEAve~AlKlAr~~~ 131 (459)
T PRK05965 90 EPAIRLAAKLAERAP--GSL-----NHVYFTLGGSDAVDSAVRFIRHYW 131 (459)
T ss_pred HHHHHHHHHHHhhCC--CCc-----CEEEEeCChhHHHHHHHHHHHHHH
Confidence 344456677777763 221 246899999999999999999874
No 69
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=81.95 E-value=15 Score=32.45 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHcCC-CCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHH
Q 036996 132 TELESIVMDWMGKMLKL-PSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKS 210 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~-p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KA 210 (214)
..+++.. .-+.+.+|. +++ .-+||+|+|+++..++.......+.+ . ++-.|+++...|.|+..+
T Consensus 42 ~~l~~a~-~~~~~~~~~~~~~-------~i~~t~g~teal~~~~~~~~~~~~~~-~------~~~~vi~~~~e~ps~~~~ 106 (382)
T TIGR03403 42 PAIAEAL-DKLYKGINARDLD-------DIIITSCATESNNWVLKGVYFDEILK-G------GKNHIITTEVEHPAVRAT 106 (382)
T ss_pred HHHHHHH-HHHHHHcCcCCCC-------eEEEeCCHHHHHHHHHHHHHHhhccc-C------CCCEEEEcCCccHHHHHH
Confidence 3444443 444456665 332 56899999999988877552211101 0 122467788999988776
Q ss_pred hh
Q 036996 211 AK 212 (214)
Q Consensus 211 a~ 212 (214)
..
T Consensus 107 ~~ 108 (382)
T TIGR03403 107 CA 108 (382)
T ss_pred HH
Confidence 43
No 70
>PRK12566 glycine dehydrogenase; Provisional
Probab=81.87 E-value=34 Score=34.63 Aligned_cols=131 Identities=10% Similarity=0.005 Sum_probs=68.0
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhH-H------HHHHhhcccCcccccC
Q 036996 55 PGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFL-G------EMLCSGFNVVGFNWLA 127 (214)
Q Consensus 55 ~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~-~------d~l~~~~n~n~~~~~~ 127 (214)
|.+++-.-+..+|+ +.+..|+++++++...++.. ...|.|-=+-....++++ - +|+++. -+ .-.+.
T Consensus 46 P~~ir~~~~l~lp~-~~sE~e~~~~~~~~a~kN~~---~~~fiG~G~y~~~~P~vi~~~i~~~~~~yTaY-TP--YQpEi 118 (954)
T PRK12566 46 PPAIRLNRPLDLPA-ALDEQAALARLRGYAEQNQV---WTSLIGMGYHGTVTPTVILRNVLENPGWYTAY-TP--YQPEI 118 (954)
T ss_pred CHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCC---ccccccccccCCcCcHHHHHHHHhCchhhhcC-CC--CCchh
Confidence 44454322345664 57888999999986555432 223433321122233444 2 233332 11 11234
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFAL 207 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si 207 (214)
|-+--+.=-+--.++++|.|+|-. ..-+.-|+| |--.|+.+|+..... ++-.+++|+..|...
T Consensus 119 sQG~Lqal~e~Qtmi~~LtGm~va-------NASl~D~at-A~aEA~~ma~~~~~~---------k~~~~~v~~~~hP~~ 181 (954)
T PRK12566 119 AQGRLEALLNFQQMTIDLTGLDLA-------NASLLDEAT-AAAEAMALAKRVAKS---------KSNRFFVDEHCHPQT 181 (954)
T ss_pred hhHHHHHHHHHHHHHHHHhCchhh-------hhhhccchh-HHHHHHHHHHHHhhc---------CCCEEEECCCCCHHH
Confidence 544322222334599999999853 223555555 445577766643211 133567899999774
Q ss_pred HH
Q 036996 208 QK 209 (214)
Q Consensus 208 ~K 209 (214)
..
T Consensus 182 ~~ 183 (954)
T PRK12566 182 LS 183 (954)
T ss_pred HH
Confidence 43
No 71
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=81.81 E-value=19 Score=36.33 Aligned_cols=128 Identities=10% Similarity=0.069 Sum_probs=67.5
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHhHhhcCCCCc--CCCCCcceeccCCCChhhhHH-------HHHHhhcccCcccc
Q 036996 55 PGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTH--WQSPNFFGYFQANASTAGFLG-------EMLCSGFNVVGFNW 125 (214)
Q Consensus 55 ~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~--~~~pr~~g~~~~~~~~~~~~~-------d~l~~~~n~n~~~~ 125 (214)
|++++..-+..+|+ +.+..|+++.+++.-.++... .-.-.|+.+. .+.++- +|+++. -+ .-.
T Consensus 31 P~~i~~~~~l~lp~-~~sE~e~~~~~~~la~~N~~~~~fig~G~y~~~-----~p~~i~r~v~~~p~~~Tay-tP--yQ~ 101 (939)
T TIGR00461 31 PPNILKRRPLQLEA-PSKEYEALAHLKKIASKNHKFKSYIGMGYYGTI-----LPPVIQRNLLENPGWYTAY-TP--YQP 101 (939)
T ss_pred CHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCCccccCCCCcCCCc-----CChHHHHHHHhCchhhhcC-CC--CCh
Confidence 34444332345665 457889999999865543220 1122222222 233333 233332 12 122
Q ss_pred cCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCch
Q 036996 126 LASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHF 205 (214)
Q Consensus 126 ~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~ 205 (214)
+.|-+.-++=-+.-.++++|.|+|-. .-.+..++| |-..|+..|+.... + ++-.+++++..|.
T Consensus 102 EisQG~Le~l~e~Qt~i~eLtGm~~a-------NaSl~d~at-A~aEa~~~a~~~~~---~------~~~~vlv~~~~hP 164 (939)
T TIGR00461 102 EISQGRLEALLNFQTVVSDLTGLPVA-------NASLLDEGT-AAAEAMALSFNVSK---K------KANKFFVAKDLHP 164 (939)
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCChh-------hhhccchhh-HHHHHHHHHHHhhc---C------CCCEEEECCCCCc
Confidence 44555444445566799999999964 234666665 44446555543211 1 1235678999998
Q ss_pred HHH
Q 036996 206 ALQ 208 (214)
Q Consensus 206 Si~ 208 (214)
...
T Consensus 165 ~~~ 167 (939)
T TIGR00461 165 QTK 167 (939)
T ss_pred chH
Confidence 755
No 72
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=81.69 E-value=7.6 Score=34.22 Aligned_cols=67 Identities=7% Similarity=-0.027 Sum_probs=42.0
Q ss_pred CCCChhhhHHHHHHhhc----ccCcccccCC---hhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCC-chHHHHHH
Q 036996 102 ANASTAGFLGEMLCSGF----NVVGFNWLAS---PVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGS-TCESLVCT 173 (214)
Q Consensus 102 ~~~~~~~~~~d~l~~~~----n~n~~~~~~s---p~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsG-Gt~aNl~A 173 (214)
++...+.-+.+.+...+ |..-+.+..+ +-+.++=.++-+.+++++|.|+.. .=+||+| ||+++=.+
T Consensus 6 Gp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~------~vvf~~gs~T~a~~~~ 79 (355)
T cd00611 6 GPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNY------KVLFLQGGATGQFAAV 79 (355)
T ss_pred CCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCc------eEEEEcCCchHHHHHH
Confidence 33334444445555555 4444445555 556677778899999999986542 5688878 88776544
Q ss_pred H
Q 036996 174 L 174 (214)
Q Consensus 174 l 174 (214)
+
T Consensus 80 ~ 80 (355)
T cd00611 80 P 80 (355)
T ss_pred H
Confidence 3
No 73
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=81.44 E-value=6.7 Score=34.67 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
...+.++-++++. .++. -.+|+++||++|..|+..||..
T Consensus 69 ~~~~~~la~~l~~---~~~~-------~~~~~~SGseA~~~Al~~ar~~ 107 (375)
T PRK04260 69 NSLQEEVAQKLIG---DKDY-------LAFFCNSGAEANEAAIKIARKA 107 (375)
T ss_pred CHHHHHHHHHHhc---CcCC-------EEEEcCccHHHHHHHHHHHHHh
Confidence 4566666665543 2221 3689999999999999999875
No 74
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=81.34 E-value=7.4 Score=34.39 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
.....++.++++++.|.+ .-++|+||+++|..|+.+||...
T Consensus 80 ~~~~~~la~~l~~~~~~~---------~v~~~~gg~eA~~~al~~a~~~~ 120 (396)
T PRK02627 80 IEPQEELAEKLVELSGMD---------KVFFCNSGAEANEAAIKLARKYG 120 (396)
T ss_pred CHHHHHHHHHHHhhcCCC---------EEEECCCcHHHHHHHHHHHHHHh
Confidence 456667778888887663 35899999999999999998764
No 75
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=81.14 E-value=4.7 Score=35.89 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHH
Q 036996 136 SIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARD 179 (214)
Q Consensus 136 ~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~ 179 (214)
.++.+++++++|.+.. ..-+||+||+++|..|+.++|.
T Consensus 88 ~~la~~l~~~~~~~~~------~~v~~~~sgsea~~~al~~~~~ 125 (398)
T PRK03244 88 IALAERLVELLGAPEG------GRVFFCNSGAEANEAAFKLARL 125 (398)
T ss_pred HHHHHHHHHhCCCCCC------CEEEEeCchHHHHHHHHHHHHH
Confidence 4677788888875421 1578999999999999999986
No 76
>PRK07481 hypothetical protein; Provisional
Probab=81.02 E-value=4.5 Score=37.13 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+.|+++++ |.+. ..-.|+++||+||-.|+++||.+.
T Consensus 86 ~~~~~lae~L~~~~~-~~~~-----~~v~f~~sGsEAve~AlklAr~~~ 128 (449)
T PRK07481 86 PRAIELSYELIDMFA-PEGM-----RRVFFSSGGSDSVETALKLARQYW 128 (449)
T ss_pred HHHHHHHHHHHHhcC-CCCC-----CEEEEcCchHHHHHHHHHHHHHHH
Confidence 445566777777774 2221 146799999999999999999875
No 77
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=80.69 E-value=11 Score=36.98 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=40.3
Q ss_pred HHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 139 MDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 139 i~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
-+-.++.||-+.++ ++|.|+|.+|..++.++-.. .+ .|++...+|=|+..|+.+
T Consensus 201 e~~AA~~fgAd~ty--------fvvNGTS~~n~av~~a~~~~------------Gd-~VLvdRN~HKSv~haLil 254 (714)
T PRK15400 201 EEYIARVFNADRSY--------MVTNGTSTANKIVGMYSAPA------------GS-TVLIDRNCHKSLTHLMMM 254 (714)
T ss_pred HHHHHHHhCCCcEE--------EEeCchHHHHHHHHHHhcCC------------CC-EEEeecccHHHHHHHHHH
Confidence 35678999998875 78999999999887765211 12 456799999999887654
No 78
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=80.57 E-value=10 Score=33.86 Aligned_cols=38 Identities=16% Similarity=0.046 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHH
Q 036996 136 SIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKAL 182 (214)
Q Consensus 136 ~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~ 182 (214)
.++.+.|+++.+.+ .-+|++.||+||..||++||.+..
T Consensus 85 ~~l~~~l~~~~~~~---------~~~~~~SGseA~e~Alk~a~~~~~ 122 (396)
T PRK04073 85 GPWYEKVAKLTGKD---------MVLPMNTGAEAVETAIKAARRWAY 122 (396)
T ss_pred HHHHHHHHhcCCCC---------eEEEcCChHHHHHHHHHHHHHHhh
Confidence 33445555655542 357899999999999999998743
No 79
>PLN02624 ornithine-delta-aminotransferase
Probab=80.40 E-value=11 Score=34.88 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHH
Q 036996 135 ESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKAL 182 (214)
Q Consensus 135 E~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~ 182 (214)
..++.+.|++++|++ .-.|+++|++||-.||+.||.+..
T Consensus 119 ~~~la~~L~~~~~~~---------~~~f~~SGseA~e~AlklAr~~~~ 157 (474)
T PLN02624 119 FPEFAEYLTSMFGYD---------MVLPMNTGAEGVETAIKLARKWGY 157 (474)
T ss_pred HHHHHHHHHhhcCCC---------eEEEeCChHHHHHHHHHHHHHHHH
Confidence 334455555566654 347899999999999999998643
No 80
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=80.39 E-value=13 Score=32.90 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 137 IVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 137 ~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
+..+.+++++|.++ ..+++||+++|...+.+-. + +.-.|+++...|+|+..++++
T Consensus 55 ~~~e~lA~~~g~~~---------~~i~~g~~~a~~~~~~~l~-------~------~gd~Vl~~~~~h~s~~~~~~~ 109 (370)
T TIGR02539 55 DFLEDLAEFLGMDE---------ARVTHGAREGKFAVMHALC-------K------EGDWVVLDGLAHYTSYVAAER 109 (370)
T ss_pred HHHHHHHHHhCCCc---------eEEECChHHHHHHHHHHhh-------C------CCCEEEECCcccHHHHHHHHH
Confidence 34555889999875 4678999999877655431 1 112455688999999877653
No 81
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=80.25 E-value=8.5 Score=34.33 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=53.9
Q ss_pred CcceeccCCCChhhhHHHHHHhhccc---C--cccccCChhHHHHHHHHHHHHHHHcCCC-CCCcCCCCCCceecCCchH
Q 036996 95 NFFGYFQANASTAGFLGEMLCSGFNV---V--GFNWLASPVATELESIVMDWMGKMLKLP-SSFLFSGTGGGVLHGSTCE 168 (214)
Q Consensus 95 r~~g~~~~~~~~~~~~~d~l~~~~n~---n--~~~~~~sp~~~~iE~~vi~wl~~l~G~p-~~~~~~~~~~G~~tsGGt~ 168 (214)
-|+.+=.+++.+..++ +.+..++.. | ......++.+..+-.++-+.+++++|-+ ++ .=+||+|+|+
T Consensus 25 iYld~a~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~-------~v~~t~g~t~ 96 (406)
T PRK09295 25 AYLDSAASAQKPSQVI-DAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAE-------ELVFVRGTTE 96 (406)
T ss_pred EEEeCcccccCCHHHH-HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCC-------eEEEeCCHHH
Confidence 4666655555555554 444333321 2 2223334555555556778899999973 33 4689999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHH
Q 036996 169 SLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFAL 207 (214)
Q Consensus 169 aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si 207 (214)
++..++..-....+ . +.-.|++++..|.|.
T Consensus 97 ~l~~~~~~~~~~~~---~------~gd~vl~~~~~~~s~ 126 (406)
T PRK09295 97 GINLVANSWGNSNV---R------AGDNIIISEMEHHAN 126 (406)
T ss_pred HHHHHHHHhhhhcC---C------CcCEEEECcchhhHH
Confidence 97766543321111 1 112456677777664
No 82
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=79.56 E-value=8.6 Score=33.97 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEE-Ee-CCCchHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVY-AS-DQTHFALQK 209 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~-~s-~~aH~Si~K 209 (214)
..+.+++-+.+++.+|.+++ .-++++||+++|..++.+-- +. .+.+++ .+ .-+|.|+..
T Consensus 53 ~~~~~~Le~~lA~~~g~~~e-------~ilv~~gg~~a~~~~~~al~-------~~-----gd~Vli~~~d~p~~~s~~~ 113 (346)
T TIGR03576 53 AIFEEKVQELGREHLGGPEE-------KILVFNRTSSAILATILALE-------PP-----GRKVVHYLPEKPAHPSIPR 113 (346)
T ss_pred HHHHHHHHHHHHHHcCCCcc-------eEEEECCHHHHHHHHHHHhC-------CC-----CCEEEECCCCCCCchhHHH
Confidence 37788888899999999764 47899999999988876431 11 233433 23 569999988
Q ss_pred Hhhc
Q 036996 210 SAKL 213 (214)
Q Consensus 210 Aa~l 213 (214)
++++
T Consensus 114 ~~~l 117 (346)
T TIGR03576 114 SCKL 117 (346)
T ss_pred HHHH
Confidence 7765
No 83
>PRK13578 ornithine decarboxylase; Provisional
Probab=79.50 E-value=9.3 Score=37.39 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=38.6
Q ss_pred HHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHH
Q 036996 140 DWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKS 210 (214)
Q Consensus 140 ~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KA 210 (214)
+..+++||-+.++ ++|.|+|.+|..++.++-.. .+ .|++...+|=|+.-+
T Consensus 181 ~~AA~~fgAd~ty--------FlvNGTS~gn~a~i~a~~~~------------Gd-~VLvdRN~HKSv~hg 230 (720)
T PRK13578 181 KHAAKVFNADKTY--------FVLNGTSASNKVVTNALLTP------------GD-LVLFDRNNHKSNHHG 230 (720)
T ss_pred HHHHHHhCCCceE--------EEeCChhHHHHHHHHHhcCC------------CC-EEEeecccHHHHHHH
Confidence 5688999998875 79999999999988775211 12 456789999999885
No 84
>PRK07480 putative aminotransferase; Validated
Probab=79.02 E-value=5.6 Score=36.60 Aligned_cols=42 Identities=10% Similarity=-0.099 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+.|+++++-+- ..-.|+++||+||-.||++||.+.
T Consensus 94 ~~~~~lae~L~~~~p~~~-------~~v~f~~SGseA~e~AlklAr~~~ 135 (456)
T PRK07480 94 PPAIELAAKLAEVAPPGF-------NHVFFTNSGSEANDTVLRMVRHYW 135 (456)
T ss_pred HHHHHHHHHHHHhCCCCc-------CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 444556666777763211 145799999999999999999874
No 85
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=78.68 E-value=22 Score=31.86 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=42.8
Q ss_pred hhhhHHHHHHhhcccCc-ccccCChhHHHHHHHHHHHHHHHcCCCCCC-cCCCCCCceecCCchHHHHHHHHHH
Q 036996 106 TAGFLGEMLCSGFNVVG-FNWLASPVATELESIVMDWMGKMLKLPSSF-LFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 106 ~~~~~~d~l~~~~n~n~-~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~-~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
++..+.+.+...++.+. ..|....+..++-+.+.+|+.+.++.+.+. ..-+...-++|+|+++++..++.+-
T Consensus 51 p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~ 124 (412)
T PTZ00433 51 TPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTAL 124 (412)
T ss_pred CCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHh
Confidence 45666677777666432 223322346778888999998766421100 0000125689999999988877654
No 86
>PRK07036 hypothetical protein; Provisional
Probab=78.14 E-value=6.2 Score=36.42 Aligned_cols=43 Identities=7% Similarity=0.030 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
++.+.++.+.|++++ |... ..-.|+++||+||-.|+++||.+.
T Consensus 94 ~~~~~~lae~L~~~~--p~~~-----~~v~f~~sGseAve~AlklAr~~~ 136 (466)
T PRK07036 94 NAPAAELAAKLAELA--PGDL-----NHVFLTTGGSTAVDSALRFVHYYF 136 (466)
T ss_pred CHHHHHHHHHHHHhC--CCCc-----CEEEEeCCchHHHHHHHHHHHHHH
Confidence 345566677777776 3221 246899999999999999999864
No 87
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=77.86 E-value=15 Score=34.29 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++-+.|++++.-.+ . ..-.|+++||+||-.|+++||.+.
T Consensus 133 ~~~~~lae~L~~~~~~~~-~-----~~v~f~~SGsEA~e~AlKlAr~~~ 175 (504)
T PLN02760 133 KPSLDLAKELLEMFTARK-M-----GKVFFTNSGSEANDTQVKLVWYYN 175 (504)
T ss_pred HHHHHHHHHHHhhcCCCC-C-----CEEEEeCChHHHHHHHHHHHHHHH
Confidence 344445555556653211 1 135789999999999999999864
No 88
>PRK06105 aminotransferase; Provisional
Probab=77.20 E-value=14 Score=33.99 Aligned_cols=43 Identities=12% Similarity=-0.059 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
+..+.++.+.|++++..+-+ .-.|+++||+||-.||++||.+.
T Consensus 91 ~~~~~~lae~L~~~~p~~~~-------~v~f~~SGseAve~AlKlar~~~ 133 (460)
T PRK06105 91 HGPVIDLAEKLVAMAPVPMS-------KVFFTNSGSEANDTVVKLVWYYN 133 (460)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEeCCcHHHHHHHHHHHHHHH
Confidence 34445566777777642211 45789999999999999999764
No 89
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=77.17 E-value=14 Score=32.18 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 134 LESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 134 iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
+..++-+++++++|.+ ..+++++|+++++.++.+. . +. .+ .|++++..|.+..+++.+
T Consensus 85 ~~~~l~~~la~~~~~~---------~~i~~~~g~~~~~~~l~~~----~---~~-----gd-~V~~~~~~~~~~~~~~~~ 142 (385)
T PRK05958 85 AHEALEEELAEWFGAE---------RALLFSSGYAANLAVLTAL----A---GK-----GD-LIVSDKLNHASLIDGARL 142 (385)
T ss_pred HHHHHHHHHHHHhCCC---------cEEEECcHHHHHHHHHHHh----C---CC-----CC-EEEEeCccCHHHHHHHHh
Confidence 3445566777777733 3588888999888765432 1 11 12 345678899998887654
No 90
>PRK05764 aspartate aminotransferase; Provisional
Probab=76.82 E-value=18 Score=31.98 Aligned_cols=64 Identities=9% Similarity=0.029 Sum_probs=40.3
Q ss_pred hHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 109 FLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 109 ~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
.+.+.+...++.....|........+++.+.+|+.+..|..-+. ..=++|+|+++++..++.+.
T Consensus 48 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~-----~~i~~~~g~~~a~~~~~~~~ 111 (393)
T PRK05764 48 HIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDP-----SQVIVTTGAKQALYNAFMAL 111 (393)
T ss_pred HHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCH-----HHEEEeCCcHHHHHHHHHHh
Confidence 34455555554333334444456789999999998877642111 14589999999887776654
No 91
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=76.56 E-value=13 Score=34.53 Aligned_cols=47 Identities=11% Similarity=-0.119 Sum_probs=32.6
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
.+...++.+.+.+.+++++. ... ..=.|+++|||||-.||++||.+.
T Consensus 100 ~~~~~~la~~l~~~l~~~~p--~~~-----~~v~f~~SGsEAvE~AlKlAr~~~ 146 (464)
T TIGR00699 100 NFPSKDWAKILKEGILKVAP--KGQ-----DQVWTGMSGSDANELAFKAAFMYY 146 (464)
T ss_pred cHHHHHHHHHHHHhHHhhCC--CCc-----CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 34445566666666666663 211 135799999999999999999864
No 92
>PRK07678 aminotransferase; Validated
Probab=76.42 E-value=4.6 Score=37.05 Aligned_cols=40 Identities=13% Similarity=-0.038 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 134 LESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 134 iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
.+.++.+-|+++++.++ .-.|+++||+||-.|+++||.+.
T Consensus 90 ~~~~lae~l~~~~~~~~--------~v~f~~sGseA~e~AlklAr~~t 129 (451)
T PRK07678 90 PAIKLAEKLNEWLGGEY--------VIFFSNSGSEANETAFKIARQYH 129 (451)
T ss_pred HHHHHHHHHHHhCCCCC--------EEEEeCCcHHHHHHHHHHHHHHH
Confidence 44456666777765432 46899999999999999999875
No 93
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=76.24 E-value=13 Score=33.02 Aligned_cols=48 Identities=15% Similarity=0.007 Sum_probs=29.2
Q ss_pred ceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHH
Q 036996 160 GVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQK 209 (214)
Q Consensus 160 G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~K 209 (214)
-+|+++||+||..|+..+|.+...+++ ....++-++.....-|-+..-
T Consensus 91 ~~~~~SGs~A~e~al~~~~~~~~~~~~--~~~~~~~vl~~~~~~Hg~~~~ 138 (400)
T PTZ00125 91 VLPMNSGAEAGETALKFARKWGYEVKG--IPENQAKIIFCNGNFSGRTIG 138 (400)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhccC--CCCCCCeEEEECCCcCCccHH
Confidence 478999999999999999976432221 111123444455555554433
No 94
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=76.16 E-value=11 Score=33.29 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=31.6
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 127 ASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 127 ~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
..+....+|+.+.+++++++|.+.. -+++++||+++..++.+-
T Consensus 59 ~~~~~~~l~~~~~~~~~~~~g~~~~--------~v~~~sgt~a~~~~l~~l 101 (402)
T cd00378 59 GCEYVDEIEDLAIERAKKLFGAEYA--------NVQPHSGSQANLAVYFAL 101 (402)
T ss_pred CchHHHHHHHHHHHHHHHHhCCCce--------eeecCCcHHHHHHHHHHh
Confidence 3456678888888999999998642 355556788888766554
No 95
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=76.08 E-value=19 Score=33.17 Aligned_cols=43 Identities=5% Similarity=-0.104 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
+..+.++.+.|++++.-+- ..-.|+++||+||-.|+++||.+.
T Consensus 98 ~~~~~~lae~L~~~~p~~~-------~~v~f~~SGseAve~AlklAr~~~ 140 (460)
T PRK06916 98 NVPSILLAEKLIEVVPEGL-------KKVFYSDSGATAVEIAIKMAFQYW 140 (460)
T ss_pred CHHHHHHHHHHHHhCCCCC-------CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 3445566777777763211 146899999999999999999864
No 96
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=76.06 E-value=15 Score=33.03 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=20.4
Q ss_pred CceecCCchHHHHHHHHHHHHHH
Q 036996 159 GGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 159 ~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
.-+|+++||+||..|+++||.+.
T Consensus 98 ~v~~~~sGseA~e~Alk~ar~~~ 120 (406)
T PRK12381 98 RVFFCNSGAEANEAALKLARKYA 120 (406)
T ss_pred eEEEcCCcHHHHHHHHHHHHHHH
Confidence 35899999999999999999874
No 97
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=75.97 E-value=8 Score=35.07 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
..+.++.+.|++++..+.. ..=.|+++||+||-.|+++||..
T Consensus 83 ~~~~~la~~l~~~~p~~~~------~~~~f~~sGseA~e~AlklAr~~ 124 (421)
T PRK09792 83 ESYVTLAEKINALAPVSGQ------AKTAFFTTGAEAVENAVKIARAH 124 (421)
T ss_pred HHHHHHHHHHHHhCCCCCC------ceEEEeCChHHHHHHHHHHHHHh
Confidence 4445666777777643211 13578889999999999999975
No 98
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=75.87 E-value=9.5 Score=34.95 Aligned_cols=41 Identities=7% Similarity=-0.095 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 134 LESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 134 iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
.+.++.+.|+++++.+.+ .-.|+++||+||-.|++.||.+.
T Consensus 85 ~~~~la~~L~~~~p~~~~-------~v~f~~sGsEAve~AlklAr~~t 125 (443)
T PRK08360 85 EPLLLAEKLIEIAPGDNP-------KVSFGLSGSDANDGAIKFARAYT 125 (443)
T ss_pred HHHHHHHHHHHhCCCCCC-------EEEEcCCHHHHHHHHHHHHHHhc
Confidence 444666677777743321 46899999999999999999763
No 99
>PRK07482 hypothetical protein; Provisional
Probab=75.63 E-value=15 Score=33.79 Aligned_cols=43 Identities=7% Similarity=-0.126 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
++.+.++.+.|++++. .+. ..-.|+++||+||-.||++||.+.
T Consensus 93 ~~~~~~lAe~L~~~~p--~~~-----~~v~f~~sGSEAve~AlKlAr~~~ 135 (461)
T PRK07482 93 TEASITLSKRIIDRAP--AGM-----SKVYYGLSGSDANETQIKLVWYYN 135 (461)
T ss_pred CHHHHHHHHHHHHhCC--CCc-----CEEEEeCchHHHHHHHHHHHHHHH
Confidence 4555667777778763 211 135799999999999999999864
No 100
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=74.83 E-value=19 Score=33.15 Aligned_cols=43 Identities=5% Similarity=-0.054 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKAL 182 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~ 182 (214)
..+.++.+-|+++++-+-+ .-.|+++||+||-.|+++||.+..
T Consensus 97 ~~~~~lAe~L~~~~p~~~~-------~v~f~~sGseAve~AlKlA~~~~~ 139 (453)
T PRK06943 97 EPAIELAERLAALTGGTLG-------HAFFASDGASAVEIALKMSFHAWR 139 (453)
T ss_pred HHHHHHHHHHHHhCCCCCC-------EEEEeCCCHHHHHHHHHHHHHHHH
Confidence 3445566777777643211 468999999999999999998753
No 101
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=74.75 E-value=19 Score=33.30 Aligned_cols=43 Identities=7% Similarity=-0.019 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
++...++.+.|++++. ... ..-.|+++||+||-.|+++||.+.
T Consensus 89 ~~~~~~lae~L~~~~p--~~~-----~~v~f~~sGsEAve~AlKlAr~~~ 131 (466)
T PRK07030 89 HEPVIELSERLVKITP--PGL-----SRCFYADNGSSAIEVALKMSFHYW 131 (466)
T ss_pred CHHHHHHHHHHHHhCC--CCc-----CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 3455667777888763 221 146899999999999999999874
No 102
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=74.61 E-value=9.6 Score=32.86 Aligned_cols=62 Identities=21% Similarity=0.132 Sum_probs=41.3
Q ss_pred cCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCch
Q 036996 126 LASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHF 205 (214)
Q Consensus 126 ~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~ 205 (214)
...|...++|+. +++++|.+ ..++|++||+++..++.+.+- + +.-.|+++..+|.
T Consensus 15 ~~~~~~~~~~~~----la~~~~~~---------~~~~~~sgt~al~~~l~~l~~------~------~gd~vl~~~~~~~ 69 (352)
T cd00616 15 TLGPKVREFEKA----FAEYLGVK---------YAVAVSSGTAALHLALRALGI------G------PGDEVIVPSFTFV 69 (352)
T ss_pred cCCHHHHHHHHH----HHHHhCCC---------eEEEECCHHHHHHHHHHHcCC------C------CCCEEEeCCcchH
Confidence 446666677765 55666643 368899999999888776531 1 1124567888888
Q ss_pred HHHHHhh
Q 036996 206 ALQKSAK 212 (214)
Q Consensus 206 Si~KAa~ 212 (214)
+...++.
T Consensus 70 ~~~~~~~ 76 (352)
T cd00616 70 ATANAIL 76 (352)
T ss_pred HHHHHHH
Confidence 8877654
No 103
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=74.42 E-value=12 Score=34.21 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+.|+++++-+.. ..-.|+++||+||-.|+++||.+.
T Consensus 97 ~~~~~la~~L~~~~p~~~~------~~v~f~~sGseA~e~AlklAr~~t 139 (451)
T PRK06918 97 EPYIELAEKLAALAPGSFD------KKVLFLNSGAEAVENAVKIARKYT 139 (451)
T ss_pred HHHHHHHHHHHHhCCCCCC------CEEEEcCCcHHHHHHHHHHHHHHh
Confidence 4556677778887742211 135899999999999999999864
No 104
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=74.42 E-value=13 Score=33.19 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=51.5
Q ss_pred CcCCCCCcceeccCCCChhhhHHHHHHhhcccCcccc---cCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCC
Q 036996 89 THWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNW---LASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGS 165 (214)
Q Consensus 89 ~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~---~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsG 165 (214)
+++.+-.|+|.-.. +.....+.+.+...-.....+. ...+...++| +.+++++|.+ ..++++.
T Consensus 48 ~~~~sn~ylgl~~~-p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le----~~la~~~g~~---------~~~~~~S 113 (406)
T PRK13393 48 TVWCSNDYLGMGQH-PAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLE----AELADLHGKE---------AALLFTS 113 (406)
T ss_pred EEeecccccCCCCC-HHHHHHHHHHHHHcCCCCcccccccCChHHHHHHH----HHHHHHhCCC---------cEEEeCC
Confidence 35666678876432 2233333333332211111111 1223445555 5566666653 2466666
Q ss_pred chHHHHHHHHH-HHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhh
Q 036996 166 TCESLVCTLAA-ARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAK 212 (214)
Q Consensus 166 Gt~aNl~Al~a-AR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~ 212 (214)
|+++|..++.+ ++.. +.-+|++....|.|+..++.
T Consensus 114 G~~An~~ai~~l~~~~------------~g~~I~~~~~~H~s~~~~~~ 149 (406)
T PRK13393 114 GYVSNWAALSTLGSRL------------PGCVILSDELNHASMIEGIR 149 (406)
T ss_pred cHHHHHHHHHHhhcCC------------CCCEEEEccchhHHHHHHHH
Confidence 67899999884 4321 11256667788988877654
No 105
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=73.89 E-value=23 Score=31.42 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=53.2
Q ss_pred CcceeccCCCChhhhHHHHHHhhccc---Ccc--cccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHH
Q 036996 95 NFFGYFQANASTAGFLGEMLCSGFNV---VGF--NWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCES 169 (214)
Q Consensus 95 r~~g~~~~~~~~~~~~~d~l~~~~n~---n~~--~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~a 169 (214)
-|+.+=..++.+..+ -+.+..+++. |.. .+..++...+.-.++-+.+++++|.++.. .-+||+|+|++
T Consensus 18 iyld~a~~~~~p~~v-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~------~i~~t~g~t~~ 90 (398)
T TIGR03392 18 VYLDSAATALKPQAV-IDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAE------NIVWTRGTTES 90 (398)
T ss_pred EEeeCccccCCCHHH-HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCC------eEEEeCChHHH
Confidence 355555455544444 3555455432 211 12223334445556777899999985211 46789999998
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHH
Q 036996 170 LVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFAL 207 (214)
Q Consensus 170 Nl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si 207 (214)
+-.++.+.... ..+ +.-.|++++..|+|.
T Consensus 91 l~~~~~~~~~~---~~~------~gd~Vl~~~~~~~s~ 119 (398)
T TIGR03392 91 INLVAQSYARP---RLQ------PGDEIIVSEAEHHAN 119 (398)
T ss_pred HHHHHHHhhhc---cCC------CCCEEEECCcchhHH
Confidence 87776543211 001 112456788888774
No 106
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=73.69 E-value=25 Score=30.77 Aligned_cols=70 Identities=14% Similarity=0.059 Sum_probs=45.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCc
Q 036996 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTH 204 (214)
Q Consensus 125 ~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH 204 (214)
...+.-..++=+++-+-+++++|.+++. .=+||+++|.++-..+...+... . +.-.|+++...|
T Consensus 35 ~~~~~~~~~~~~~~r~~la~~lg~~~~~------~v~~~~~~t~a~~~~~~~l~~~~----~------~g~~vl~~~~~~ 98 (371)
T PF00266_consen 35 SHRSREFAEILEEAREALAKLLGAPPDE------EVVFTSNGTEALNAVASSLLNPL----K------PGDEVLVTSNEH 98 (371)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHTSSTTE------EEEEESSHHHHHHHHHHHHHHHG----T------TTCEEEEEESSH
T ss_pred cchhhhhhHHHHHHHHHHHHhcCCcccc------ccccccccchhhhhhhhcccccc----c------cccccccccccc
Confidence 3344444455556777899999998832 45789999987666666654432 1 222466778889
Q ss_pred hHHHHH
Q 036996 205 FALQKS 210 (214)
Q Consensus 205 ~Si~KA 210 (214)
+|...+
T Consensus 99 ~s~~~~ 104 (371)
T PF00266_consen 99 PSNRYP 104 (371)
T ss_dssp HHHHHH
T ss_pred cccccc
Confidence 988743
No 107
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=73.40 E-value=17 Score=32.38 Aligned_cols=40 Identities=18% Similarity=0.042 Sum_probs=28.7
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
.+...++++.+. +++|++ ..+|+++||+||-.|+++||.+
T Consensus 65 ~~~~~~la~~l~----~~~~~~---------~v~~~~SGseA~e~Alklar~~ 104 (364)
T PRK04013 65 HEEKEEMLEELS----KWVNYE---------YVYMGNSGTEAVEAALKFARLY 104 (364)
T ss_pred CHHHHHHHHHHH----hhcCCC---------EEEEeCchHHHHHHHHHHHHHH
Confidence 344445555544 444553 3689999999999999999987
No 108
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=73.17 E-value=18 Score=32.02 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=53.5
Q ss_pred CcceeccCCCChhhhHHHHHHhhcccC---c--ccccCChhHHHHHHHHHHHHHHHcCCC-CCCcCCCCCCceecCCchH
Q 036996 95 NFFGYFQANASTAGFLGEMLCSGFNVV---G--FNWLASPVATELESIVMDWMGKMLKLP-SSFLFSGTGGGVLHGSTCE 168 (214)
Q Consensus 95 r~~g~~~~~~~~~~~~~d~l~~~~n~n---~--~~~~~sp~~~~iE~~vi~wl~~l~G~p-~~~~~~~~~~G~~tsGGt~ 168 (214)
-|+.+-..++.+..++ +.+..++... . ..+..+......-.++-+.+++++|.+ ++ .-+||+|+|+
T Consensus 21 ~yld~a~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~-------~i~~~~~~t~ 92 (401)
T PRK10874 21 VYLDSAATALKPQAVI-EATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAK-------NIVWTRGTTE 92 (401)
T ss_pred EEEeCCcccCCCHHHH-HHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCC-------EEEEECCHHH
Confidence 4666665666555555 4444444321 1 111223334555566778899999983 33 5678999998
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHH
Q 036996 169 SLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFAL 207 (214)
Q Consensus 169 aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si 207 (214)
++-..+.......+ . +.-.|++++..|+|.
T Consensus 93 ~i~~~~~~~~~~~~---~------~gd~vl~~~~~~~s~ 122 (401)
T PRK10874 93 SINLVAQSYARPRL---Q------PGDEIIVSEAEHHAN 122 (401)
T ss_pred HHHHHHHHhhhccC---C------CcCEEEECCcchHHH
Confidence 87666544311000 1 112456788888763
No 109
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=73.14 E-value=26 Score=30.86 Aligned_cols=62 Identities=13% Similarity=0.013 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHH
Q 036996 130 VATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQ 208 (214)
Q Consensus 130 ~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~ 208 (214)
...++-.++-+.+++++|.++. .-++++|+|+++...+.+..... + +.-.|++++..|+|..
T Consensus 57 ~~~~~~~~l~~~ia~~~~~~~~-------~v~~~~~~t~~l~~~~~~~~~~~----~------~gd~vl~~~~~~~s~~ 118 (397)
T TIGR01976 57 RADQVVDDAREAVADLLNADPP-------EVVFGANATSLTFLLSRAISRRW----G------PGDEVIVTRLDHEANI 118 (397)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC-------eEEEeCCHHHHHHHHHHHHHhcC----C------CCCEEEEcCCchHhHH
Confidence 3445667888899999998754 35788888887654443332111 1 1124566788888764
No 110
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=73.12 E-value=5.9 Score=36.76 Aligned_cols=42 Identities=17% Similarity=0.066 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
+..|.++.+.+++++..-+ .-.|++.|||||..|+++||.+.
T Consensus 138 ~~~~~~lAe~l~~~~p~~~--------~v~f~~SGsEA~e~AlklAR~~t 179 (474)
T PLN02482 138 CLLENVLAEMVIDAVPSVE--------MVRFVNSGTEACMGVLRLARAYT 179 (474)
T ss_pred CHHHHHHHHHHHHhCCCCC--------EEEEeCChHHHHHHHHHHHHHhc
Confidence 4667788888998874322 45799999999999999999863
No 111
>PRK07505 hypothetical protein; Provisional
Probab=72.91 E-value=20 Score=31.91 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHH
Q 036996 131 ATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQ 208 (214)
Q Consensus 131 ~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~ 208 (214)
.++...++-+.+++++|. + -++++.|+++|..++.+++....+ + + ++.+|+.....|.|+.
T Consensus 89 ~~~~~~~l~~~la~~~~~-~---------~~~~~sG~~a~~~ai~~~~~~~~~--~----~-~~~vi~~~~~~H~s~~ 149 (402)
T PRK07505 89 RSQILKDLEEALSELFGA-S---------VLTFTSCSAAHLGILPLLASGHLT--G----G-VPPHMVFDKNAHASLN 149 (402)
T ss_pred hhHHHHHHHHHHHHHhCC-C---------EEEECChHHHHHHHHHHHHhcccC--C----C-CCCEEEEchhhhHhHH
Confidence 345556677778888876 3 244555678999999887653221 0 1 2335566778898874
No 112
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=72.36 E-value=11 Score=34.45 Aligned_cols=43 Identities=14% Similarity=-0.024 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
+..+.++.+.|+++++-+.- ..-.|+++||+||-.|+++||.+
T Consensus 96 ~~~~~~lAe~L~~~~p~~~~------~~v~f~~SGsEA~e~AlklAr~~ 138 (441)
T PRK05769 96 YEPAVELAERLVEIAPGGFE------KKVFFTNSGTESNEAAIKIARYH 138 (441)
T ss_pred CHHHHHHHHHHHHhCCCCCC------CEEEECCchHHHHHHHHHHHHHH
Confidence 34556777888887742111 14578999999999999999976
No 113
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=72.10 E-value=11 Score=34.38 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
+...++.+.++++++.+.. ..-.|+++||+||-.|+++||.+
T Consensus 99 ~~~~~la~~l~~~~p~~~~------~~v~f~~sGseA~e~AlklAr~~ 140 (443)
T PRK06058 99 EGYVAVAEQLNRLTPGDHE------KRSALFNSGAEAVENAVKIARSY 140 (443)
T ss_pred HHHHHHHHHHHHhCCCCCC------CEEEEeCCcHHHHHHHHHHHHHh
Confidence 4555677788888743211 13478888999999999999986
No 114
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=72.08 E-value=11 Score=34.22 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
..+.++.+++++++...+ .-.||.+||+||..|+++||..
T Consensus 90 ~~~~~la~~L~~~~~~~~--------~v~~~~sGseA~e~Aik~a~~~ 129 (426)
T PRK00062 90 ELEVELAELVIELVPSIE--------MVRMVNSGTEATMSAIRLARGY 129 (426)
T ss_pred HHHHHHHHHHHHhCCCCC--------EEEEecCHHHHHHHHHHHHHHH
Confidence 455677888888763222 3579999999999999999986
No 115
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=72.08 E-value=15 Score=33.29 Aligned_cols=40 Identities=10% Similarity=0.049 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 134 LESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 134 iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
.+.++-+.|+++++ ... ..=.|+++||+||-.|+++||..
T Consensus 87 ~~~~la~~L~~~~~--~~~-----~~v~f~~SGseA~e~AlklAr~~ 126 (433)
T PRK08117 87 SILKLAEELAEITP--GGL-----DCFFFSNSGAEAIEGALKLAKHV 126 (433)
T ss_pred HHHHHHHHHHHhCC--CCC-----CEEEEeCcHHHHHHHHHHHHHHh
Confidence 34455555666662 211 13578899999999999999976
No 116
>PRK07683 aminotransferase A; Validated
Probab=71.83 E-value=18 Score=32.03 Aligned_cols=63 Identities=10% Similarity=0.021 Sum_probs=41.0
Q ss_pred HHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 110 LGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 110 ~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
+.+.+...+..+...|...+...++++.+.+|+.+..|.+-+. ...-++|+|+++++..++.+
T Consensus 46 ~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~----~~~I~~t~G~~~al~~~~~~ 108 (387)
T PRK07683 46 VKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSP----ESEIIVTIGASEAIDIAFRT 108 (387)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCcEEEeCChHHHHHHHHHH
Confidence 4455555554443344444556789999999998877764221 01468999999988877654
No 117
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=71.62 E-value=7 Score=35.74 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+.|+++++.... .-.|+.+||+||-.|+++||.+.
T Consensus 93 ~~~~~la~~L~~~~~~~~~-------~v~f~~SGsEA~e~AiklAr~~t 134 (433)
T PRK00615 93 EQEILFAEELFSYLGLEDH-------KIRFVSSGTEATMTAVRLARGIT 134 (433)
T ss_pred HHHHHHHHHHHHhCCCCcC-------EEEEeCchHHHHHHHHHHHHHhh
Confidence 4556678888888754321 45899999999999999999863
No 118
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=71.55 E-value=17 Score=33.53 Aligned_cols=40 Identities=5% Similarity=0.023 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 134 LESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 134 iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
.+.++.+.|+++++.+.+ .-.|+++||+||-.|+++||.+
T Consensus 97 ~~~~lae~L~~~~p~~~~-------~v~f~~SGsEA~e~AlklAr~~ 136 (457)
T PRK05639 97 RAIRVAEKLAEISPIENP-------KVLFGLSGSDAVDMAIKVSKFS 136 (457)
T ss_pred HHHHHHHHHHhhCCCCcC-------EEEEeCchHHHHHHHHHHHHHh
Confidence 344566777777643322 4689999999999999999976
No 119
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=71.40 E-value=6.2 Score=35.85 Aligned_cols=50 Identities=24% Similarity=0.187 Sum_probs=36.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHh
Q 036996 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKL 185 (214)
Q Consensus 125 ~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~ 185 (214)
+...+ +..+|+.+++-+.+- +.+ .=.|+..||+||-+||+.||.....+.
T Consensus 95 ~~t~e-av~l~~~l~~~~~~~--~~~--------rvff~nsGTeAne~ALK~Ark~~~~~~ 144 (433)
T KOG1401|consen 95 YFTLE-AVELEEVLSAVLGKG--SAE--------RVFFCNSGTEANETALKFARKFTGKKH 144 (433)
T ss_pred cccHH-HHHHHHHHHhcccCC--Ccc--------EEEEecCCcHHHHHHHHHHHHhhcccC
Confidence 44445 567777766666552 332 467999999999999999999877654
No 120
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=71.28 E-value=18 Score=32.37 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhh
Q 036996 137 IVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAK 212 (214)
Q Consensus 137 ~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~ 212 (214)
++-+.+++++|.++ .++++.|+++|..++.+.-.. . +.-+|+++...|+|...++.
T Consensus 95 ~Le~~la~~~g~~~---------~i~~~sG~~a~~~~i~~l~~~-----~------~g~~vi~~~~~h~s~~~~~~ 150 (410)
T PRK13392 95 LLERELADLHGKES---------ALLFTSGYVSNDAALSTLGKL-----L------PGCVILSDALNHASMIEGIR 150 (410)
T ss_pred HHHHHHHHHhCCCC---------EEEECcHHHHHHHHHHHHhcC-----C------CCCEEEEehhhhHHHHHHHH
Confidence 33456677777542 467777789998888632110 1 11256667778999877654
No 121
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=71.13 E-value=18 Score=32.20 Aligned_cols=56 Identities=9% Similarity=0.090 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhh
Q 036996 137 IVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAK 212 (214)
Q Consensus 137 ~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~ 212 (214)
++-+.+++++|.+ ..++++.|+++|..++.+++... +.-+|++....|.|+..++.
T Consensus 94 ~Le~~la~~~g~~---------~~l~~~sG~~an~~ai~~l~~~~-----------~~~~v~~~~~~h~s~~~~~~ 149 (402)
T TIGR01821 94 ELEAELADLHGKE---------SALVFTSGYVANDATLATLAKII-----------PGCVIFSDELNHASMIEGIR 149 (402)
T ss_pred HHHHHHHHHhCCC---------eEEEECchHHHHHHHHHHhhCCC-----------CCCEEEEcchHhHHHHHHHH
Confidence 3445566666743 24777778999999998876421 12355555667888766543
No 122
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=71.05 E-value=19 Score=32.56 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
....++.+.|+++.+..+ .-.|+++||+||-.|+++||.+.
T Consensus 82 ~~~~~la~~L~~~~~~~~--------~v~f~~sGseA~e~AlklAr~~~ 122 (408)
T PRK04612 82 APPLKLAEELVTASRFAE--------KVFLCNSGTEANEAAIKLVRKWA 122 (408)
T ss_pred HHHHHHHHHHHhhCCCCC--------EEEEcCchHHHHHHHHHHHHHHH
Confidence 334466677777764322 35899999999999999999875
No 123
>PRK08297 L-lysine aminotransferase; Provisional
Probab=70.50 E-value=7.9 Score=35.45 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 136 SIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 136 ~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
.+..+-|+++.+ |++. ..-.|+++|||||-.|++.||.+.
T Consensus 95 ~~la~~l~~~~~-p~~~-----~~v~f~~SGsEAve~AlKlAr~~~ 134 (443)
T PRK08297 95 ARFVDTFARVLG-DPEL-----PHLFFVDGGALAVENALKVAFDWK 134 (443)
T ss_pred HHHHHHHHhhcC-CCCC-----CEEEEeCchHHHHHHHHHHHHHHh
Confidence 344555666653 3321 246899999999999999999874
No 124
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=70.21 E-value=15 Score=33.86 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=51.4
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchH
Q 036996 127 ASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFA 206 (214)
Q Consensus 127 ~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~S 206 (214)
+..+..+|=.++-.||+++-|++.- -+-...|+..-+++|++.|.+...+ |. ..|-+++++++||=.
T Consensus 103 ~vqG~l~li~~Lq~~L~~ITG~Dav--------sLQP~AGAqGE~aGll~Ir~YHe~r-G~----~~R~~~LIP~SAHGT 169 (496)
T COG1003 103 QVQGYLELIYELQEWLKEITGMDAV--------SLQPNAGAQGEYAGLLAIRAYHESR-GE----GHRNICLIPDSAHGT 169 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcee--------eccCCCCcchhhHHHHHHHHHHHHc-CC----CcCcEEEeeccccCC
Confidence 3445667778889999999999862 2334566889999999999987543 32 145667789999965
Q ss_pred HHHHh
Q 036996 207 LQKSA 211 (214)
Q Consensus 207 i~KAa 211 (214)
---.|
T Consensus 170 NPASA 174 (496)
T COG1003 170 NPASA 174 (496)
T ss_pred ChhhH
Confidence 44443
No 125
>PLN02656 tyrosine transaminase
Probab=70.13 E-value=77 Score=28.32 Aligned_cols=65 Identities=6% Similarity=0.109 Sum_probs=42.8
Q ss_pred hhhHHHHHHhhcccCc-ccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 107 AGFLGEMLCSGFNVVG-FNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 107 ~~~~~d~l~~~~n~n~-~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
+..+-+.+..++..+. ..|....+..++.+.+.+|+.+..|++-+. ..-++|+|+++++..++.+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-----~~i~~t~G~~~al~~~~~~ 115 (409)
T PLN02656 50 THVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSL-----DDVFITSGCTQAIDVALSM 115 (409)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCc-----ccEEEeCChHHHHHHHHHH
Confidence 3455566666655442 234344566788899999999887764221 2567999999987776654
No 126
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=69.81 E-value=28 Score=31.63 Aligned_cols=41 Identities=7% Similarity=-0.117 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 134 LESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 134 iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
...++.+.|+++++.+-+ .-.|+++||+||-.|+++||.+.
T Consensus 84 ~~~~lae~L~~~~p~~~~-------~v~f~~SGseA~e~AlklAr~~~ 124 (422)
T PRK05630 84 PAIKLTRKLLNLTDNGLD-------HVFYSDSGSVSVEVAIKMALQYS 124 (422)
T ss_pred HHHHHHHHHHhhCCCCcC-------EEEEeCCcHHHHHHHHHHHHHHH
Confidence 344566677777632211 45799999999999999999875
No 127
>PRK07483 hypothetical protein; Provisional
Probab=69.73 E-value=18 Score=33.12 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 134 LESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 134 iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
...++.+.|++++..+-+ .=.|+++||+||-.|+++||.+.
T Consensus 74 ~~~~lae~L~~~~p~~~~-------~v~f~~sGsEAve~AlklAr~~~ 114 (443)
T PRK07483 74 PAEALADRLVAAAPAGLE-------HVYFVSGGSEAVEAALKLARQYF 114 (443)
T ss_pred HHHHHHHHHHHhCCCCCC-------EEEEcCCcHHHHHHHHHHHHHHH
Confidence 344566777777631111 35799999999999999999874
No 128
>PLN02822 serine palmitoyltransferase
Probab=69.40 E-value=73 Score=29.49 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=14.0
Q ss_pred EEEEeCCCchHHHHHhhc
Q 036996 196 AVYASDQTHFALQKSAKL 213 (214)
Q Consensus 196 ~i~~s~~aH~Si~KAa~l 213 (214)
+|++....|+|+..++.+
T Consensus 195 ~Ii~d~~~H~s~~~~~~l 212 (481)
T PLN02822 195 IIVADEGVHWGIQNGLYL 212 (481)
T ss_pred EEEEeCCccHHHHHHHHH
Confidence 445678899999888765
No 129
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=69.25 E-value=14 Score=34.12 Aligned_cols=42 Identities=10% Similarity=-0.013 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
++.+.++-+.|+++++.+.+ .-.|+++||+||-.|++.||.+
T Consensus 112 ~~~~~~lae~L~~~~p~~~~-------~v~f~~sGseAve~AlklAr~~ 153 (459)
T PRK06082 112 NETAIECAEKLTEIAGGELN-------RVLFAPGGTSAIGMALKLARHI 153 (459)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEECCCcHHHHHHHHHHHHHh
Confidence 34555666777777753211 4689999999999999999975
No 130
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=69.10 E-value=23 Score=30.45 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=40.1
Q ss_pred cCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 101 QANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 101 ~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
+++..+...+-+.+...++. | ++....+-..+-+.+++++|.+++. ..-++++|||+++..++...
T Consensus 5 p~p~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~la~~~~~~~~~-----~~i~~~~~gt~~l~~~~~~~ 70 (355)
T TIGR03301 5 PGPLSTSATVRDAMLVDWCH----W--DSEFNDVTDQVRDRLLALAGGDDNH-----TCVLLQGSGTFAVEATIGSL 70 (355)
T ss_pred CCCCCCCHHHHHHhhhhccC----C--CHHHHHHHHHHHHHHHHHhcCCCCC-----cEEEEeCCcHHHHHHHHHhc
Confidence 33444444444555443332 2 2233356667788999999998642 13557899998888776554
No 131
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=68.77 E-value=21 Score=32.26 Aligned_cols=42 Identities=10% Similarity=-0.006 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+.|++++. ... ..-.|+++||+||-.|+++||.+.
T Consensus 85 ~~~~~la~~l~~~~p--~~~-----~~v~f~~sGseA~e~A~klar~~~ 126 (423)
T PRK05964 85 EPAERLAQRLVALTP--GGL-----DHVFFSDSGSVAVEVALKMALQYW 126 (423)
T ss_pred HHHHHHHHHHHHhCC--CCC-----CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 444566777777763 211 145799999999999999999874
No 132
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=68.71 E-value=9.2 Score=35.11 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
....++.+.|++++..+.+ .-.|+.+|||||-.|+++||.+.
T Consensus 117 ~~~~~lAe~L~~~~p~~~~-------~v~f~~SGsEA~e~AlklAr~~t 158 (442)
T TIGR03372 117 PLRALLAKTLAALTPGKLK-------YSFFCNSGTESVEAALKLAKAYQ 158 (442)
T ss_pred HHHHHHHHHHHHhCCCCcC-------EEEEeCCchHHHHHHHHHHHHHH
Confidence 3445667777777632211 35899999999999999999875
No 133
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=68.66 E-value=15 Score=33.72 Aligned_cols=43 Identities=9% Similarity=-0.143 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+.|++++.-+.. ..=.|+++||+||-.|+++||...
T Consensus 85 ~~~~~lae~L~~~~p~~~~------~~v~f~~SGseA~e~AiklAr~~t 127 (445)
T PRK08593 85 EPLVRLAKKLCELAPGDFE------KRVTFGLSGSDANDGIIKFARAYT 127 (445)
T ss_pred HHHHHHHHHHHHhCCCCCC------CEEEECCchHHHHHHHHHHHHHhh
Confidence 3444556667777632210 135799999999999999999863
No 134
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=68.52 E-value=34 Score=31.18 Aligned_cols=42 Identities=12% Similarity=-0.065 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
....++.+.|+++++-+-+ .=.|+++||+||-.|++.||.+.
T Consensus 86 ~~~~~la~~L~~~~p~~~~-------~v~f~~SGsEAve~AlklAr~~~ 127 (428)
T PRK07986 86 PPAIELCRKLVAMTPQPLE-------CVFLADSGSVAVEVAMKMALQYW 127 (428)
T ss_pred HHHHHHHHHHHhhCCCCcC-------EEEEeCCcHHHHHHHHHHHHHHH
Confidence 3455667778887642211 45899999999999999999864
No 135
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=68.22 E-value=20 Score=32.50 Aligned_cols=41 Identities=7% Similarity=0.114 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 135 ESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 135 E~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
+.++.+.|++++..+.- ..=.|+++||+||-.|+++||.+.
T Consensus 85 ~~~la~~l~~~~p~~~~------~~~~f~~sGseA~e~AlklAr~~t 125 (421)
T PRK06777 85 YVTLAERINALAPIDGP------AKTAFFTTGAEAVENAVKIARAYT 125 (421)
T ss_pred HHHHHHHHHHhCCCCCC------ceEEEeCCcHHHHHHHHHHHHHhh
Confidence 34556667777643211 135788999999999999999763
No 136
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=68.05 E-value=27 Score=30.56 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHH
Q 036996 130 VATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQK 209 (214)
Q Consensus 130 ~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~K 209 (214)
+...+-.++.+++++++|-++ . ++++.|+++++.++.+.. .. .+ .|++....|.+...
T Consensus 75 g~~~l~~~l~~~l~~~~g~~~--------~-i~~~sG~~a~~~a~~~~~-------~~-----gd-~vi~~~~~~~~~~~ 132 (385)
T TIGR01825 75 GTLRLHEELEEKLAKFKKTEA--------A-LVFQSGFNTNQGVLSALL-------RK-----GD-IVLSDELNHASIID 132 (385)
T ss_pred CCcHHHHHHHHHHHHHhCCCc--------E-EEECcHHHHHHHHHHHhC-------CC-----CC-EEEEEccccHHHHH
Confidence 334566778888999988543 2 455555888887766531 11 12 45577888999877
Q ss_pred Hhh
Q 036996 210 SAK 212 (214)
Q Consensus 210 Aa~ 212 (214)
++.
T Consensus 133 ~~~ 135 (385)
T TIGR01825 133 GLR 135 (385)
T ss_pred HHH
Confidence 654
No 137
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=67.93 E-value=67 Score=29.60 Aligned_cols=123 Identities=10% Similarity=0.022 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHH-HHHHh--hcccC-cccccCChhHHHHHHHHHHHHHH
Q 036996 69 SPESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLG-EMLCS--GFNVV-GFNWLASPVATELESIVMDWMGK 144 (214)
Q Consensus 69 ~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~-d~l~~--~~n~n-~~~~~~sp~~~~iE~~vi~wl~~ 144 (214)
.|.+..+++.++++...++. ..+.|.|-=+-+...|.++- .++.. +|-.. .--.+.|-+--+.=-+--.++++
T Consensus 55 ~~~sE~e~l~~l~~ia~kN~---~~~sfiG~GyY~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~d 131 (450)
T COG0403 55 KPLSEYEALAELKEIASKNK---VFTSFIGAGYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVAD 131 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCc---hhhhhccCcccCCcCcHHHHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHH
Confidence 35588899999999766543 44555554333333344433 22211 01100 00113333321111122357899
Q ss_pred HcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHh
Q 036996 145 MLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSA 211 (214)
Q Consensus 145 l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa 211 (214)
|.|+|=. .--+--|+| |--.|+..|+....+ ++-++++++..|..-...+
T Consensus 132 LTGm~VA-------NASm~DeaT-AaAEAm~ma~r~~k~---------k~~~~~V~~~vhpqt~~Vl 181 (450)
T COG0403 132 LTGLDVA-------NASMLDEAT-AAAEAMLMAKRVTKK---------KRNKFLVPKDVHPQTLDVL 181 (450)
T ss_pred HhCCCcc-------cchhhhhHH-HHHHHHHHHHHhhcC---------cCceEEecCCCCHHHHHHH
Confidence 9999853 334556665 555666666554321 2346788999998765443
No 138
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=67.22 E-value=36 Score=31.06 Aligned_cols=44 Identities=9% Similarity=0.109 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHcCCCC-CCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPS-SFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~-~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
++.+.++.+.|+++++.+. .. ..-+++++||+||-.|++.||.+
T Consensus 81 ~~~~~~lae~L~~~~p~~~~~~-----~~~f~~~sGsEA~e~AlklAr~~ 125 (442)
T TIGR00709 81 TPLKDAFIEALLNIIPKRKMDY-----KLQFPGPSGADAVEAAIKLAKTY 125 (442)
T ss_pred cHHHHHHHHHHHHhCCCcCCCc-----cEEEeCCCHHHHHHHHHHHHHHh
Confidence 3455566778888874321 11 02344689999999999999987
No 139
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=67.01 E-value=9.7 Score=34.61 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+.|++++..-+ .-.|+++||+||-.|+++||.+.
T Consensus 93 ~~~~~la~~l~~~~p~~~--------~v~f~~sGseA~e~AlklAr~~t 133 (428)
T PRK12389 93 ELEIEFAKMLKEAIPSLE--------KVRFVNSGTEAVMTTIRVARAYT 133 (428)
T ss_pred HHHHHHHHHHHHhCCCCc--------EEEEeCCHHHHHHHHHHHHHHhh
Confidence 455667777777764111 46899999999999999999873
No 140
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=66.42 E-value=36 Score=29.74 Aligned_cols=40 Identities=15% Similarity=0.028 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
....++-+++++++|.+ .-+++.||+++|..++.++|...
T Consensus 69 ~~~~~l~~~la~~~g~~---------~~~~~~sg~~a~~~a~~~~~~~~ 108 (379)
T TIGR00707 69 EPQEELAEKLVEHSGAD---------RVFFCNSGAEANEAALKLARKYT 108 (379)
T ss_pred HHHHHHHHHHHhhCCCC---------EEEEeCCcHHHHHHHHHHHHHHh
Confidence 34556667777778765 25899999999999999987643
No 141
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=66.30 E-value=23 Score=32.37 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+.|++++. .+. ..-.|+++||+||-.|+++||.+.
T Consensus 89 ~~~~~la~~l~~~~p--~~~-----~~v~f~~sGseA~e~AlklAr~~~ 130 (442)
T PRK13360 89 PKAFELANRIAEIAP--GGL-----NHVFFTNSGSESVDTALKIALAYH 130 (442)
T ss_pred HHHHHHHHHHHHhCC--CCC-----CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 344566777777762 211 135799999999999999999874
No 142
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=66.18 E-value=16 Score=32.14 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
....++.+.|+++++-+- ..-.|+.+||+||=.||+.||.+
T Consensus 59 ~~~~~la~~L~~~~p~~~-------~~v~f~~sGseAve~Alkla~~~ 99 (339)
T PF00202_consen 59 PEAAELAEKLAELFPGGL-------DRVFFANSGSEAVEAALKLARQY 99 (339)
T ss_dssp HHHHHHHHHHHHHSSTTE-------EEEEEESSHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhcccccc-------ceeeeccCchHHHHHHHHHhhcc
Confidence 344567788888883221 25689999999999999999943
No 143
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=66.16 E-value=14 Score=33.81 Aligned_cols=45 Identities=16% Similarity=0.072 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 129 PVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 129 p~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
.....+|...-+-++++||.+++.. ...+.+++||++|+.++.+-
T Consensus 76 ~~~~~iE~~ar~~~a~lf~a~~~~~----~~~~~~~sgt~an~~v~~al 120 (452)
T PTZ00094 76 EVVDKIENLCQKRALEAFGLDPEEW----GVNVQPYSGSPANFAVYTAL 120 (452)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcccc----eeecCCCchHHHHHHHHHHh
Confidence 4457889888999999999865420 01122388999999977654
No 144
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=66.00 E-value=12 Score=34.13 Aligned_cols=41 Identities=7% Similarity=-0.005 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..|.++.+.|++++...+ .-.|+++||+||-.|+++||.+.
T Consensus 88 ~~~~~la~~l~~~~p~~~--------~v~f~~sGseA~e~AlklAr~~t 128 (431)
T PRK06209 88 AIELDAAESFLELIDGAD--------MVKFCKNGSDATSAAVRLARAYT 128 (431)
T ss_pred HHHHHHHHHHHHhCCccc--------eEEEecCHHHHHHHHHHHHHHHh
Confidence 455567778888773212 35799999999999999999873
No 145
>PRK07777 aminotransferase; Validated
Probab=65.92 E-value=61 Score=28.56 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=32.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHH
Q 036996 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLA 175 (214)
Q Consensus 125 ~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~ 175 (214)
|...+...++++.+.+|+.+.+|.+-+. ...=++|+||++++..++.
T Consensus 57 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~----~~~i~~t~G~~~al~~~~~ 103 (387)
T PRK07777 57 YPPGPGIPELRAAIAAQRRRRYGLEYDP----DTEVLVTVGATEAIAAAVL 103 (387)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCcEEEeCCcHHHHHHHHH
Confidence 4444556788899999999988875321 0135789999999876654
No 146
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=65.84 E-value=45 Score=29.90 Aligned_cols=99 Identities=12% Similarity=-0.007 Sum_probs=51.7
Q ss_pred CCcceeccCCCChhhhHHHHHHhhccc---CcccccC--ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchH
Q 036996 94 PNFFGYFQANASTAGFLGEMLCSGFNV---VGFNWLA--SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCE 168 (214)
Q Consensus 94 pr~~g~~~~~~~~~~~~~d~l~~~~n~---n~~~~~~--sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~ 168 (214)
..|+.+=.+++.+..+ -+.+...+.. |...+.. ++....+-.++-+.+++++|.++.. .-+||+|+|+
T Consensus 33 ~iyLd~a~~~~~p~~v-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~------~v~~t~g~t~ 105 (424)
T PLN02855 33 LVYLDNAATSQKPAAV-LDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSR------EIVFTRNATE 105 (424)
T ss_pred eEEeeCccccCCCHHH-HHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCC------EEEEeCCHHH
Confidence 3566664444444444 3555444322 2222222 2223333456678899999985321 5789999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHH
Q 036996 169 SLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQ 208 (214)
Q Consensus 169 aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~ 208 (214)
++-..+.......+ . +.-.|+++...|.|..
T Consensus 106 al~~i~~~~~~~~~---~------~gd~vl~~~~~~~s~~ 136 (424)
T PLN02855 106 AINLVAYTWGLANL---K------PGDEVILSVAEHHSNI 136 (424)
T ss_pred HHHHHHHHhhhhcC---C------CcCEEEECCCccHHHH
Confidence 87665532110001 1 1124567778887753
No 147
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=65.54 E-value=5.4 Score=36.15 Aligned_cols=23 Identities=22% Similarity=-0.019 Sum_probs=21.3
Q ss_pred CceecCCchHHHHHHHHHHHHHH
Q 036996 159 GGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 159 ~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
.-+|+++|||||=+||+.||.+.
T Consensus 111 ~vfF~nsGsEANelal~mar~Yt 133 (442)
T KOG1404|consen 111 VVFFVNSGSEANELALKMARLYT 133 (442)
T ss_pred EEEEecCCchHHHHHHHHHHHhc
Confidence 57899999999999999999884
No 148
>PLN00144 acetylornithine transaminase
Probab=65.53 E-value=14 Score=33.03 Aligned_cols=39 Identities=10% Similarity=-0.083 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 134 LESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 134 iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
.+.++.+.|+++.+.+ .-.|+++||+||-.|+++||.+.
T Consensus 58 ~~~~la~~l~~~~~~~---------~v~f~~sGseA~e~AlklAr~~~ 96 (382)
T PLN00144 58 PQVELAKRLVASSFAD---------RVFFCNSGTEANEAAIKFARKYQ 96 (382)
T ss_pred HHHHHHHHHHhcCCCC---------eEEEeCCcHHHHHHHHHHHHHHH
Confidence 3445556666665432 35799999999999999999875
No 149
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=65.24 E-value=12 Score=34.55 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+.|++++..+.+ .-.|+++||+||-.|+++||.+.
T Consensus 124 ~~~~~lae~L~~~~p~~~~-------~v~f~~SGsEAve~AlklAr~~t 165 (459)
T PRK11522 124 PLRAMLAKTLAALTPGKLK-------YSFFCNSGTESVEAALKLAKAYQ 165 (459)
T ss_pred HHHHHHHHHHHHhCCCCCC-------EEEEeCCchHHHHHHHHHHHHHh
Confidence 3444556666666532111 35799999999999999999875
No 150
>PRK09064 5-aminolevulinate synthase; Validated
Probab=65.23 E-value=34 Score=30.41 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=38.1
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFAL 207 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si 207 (214)
.|...++|+. +++++|.++ .++.+.|+++|..++.+++... +..+++.....|.|+
T Consensus 90 ~~~~~~l~~~----la~~~g~~~---------~~~~~sG~~an~~ai~~l~~~~-----------~~~~i~~~~~~h~s~ 145 (407)
T PRK09064 90 NHYHVELERE----LADLHGKEA---------ALVFTSGYVSNDATLSTLAKLI-----------PDCVIFSDELNHASM 145 (407)
T ss_pred HHHHHHHHHH----HHHHhCCCc---------EEEECcHHHHHHHHHHHHhCCC-----------CCCEEEEeCcchHHH
Confidence 3445556655 455556432 4666667899999988775421 234566667778888
Q ss_pred HHHhh
Q 036996 208 QKSAK 212 (214)
Q Consensus 208 ~KAa~ 212 (214)
..++.
T Consensus 146 ~~~~~ 150 (407)
T PRK09064 146 IEGIR 150 (407)
T ss_pred HHHHH
Confidence 66554
No 151
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=65.13 E-value=19 Score=32.52 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 135 ESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 135 E~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
+.++.+.|++++.-+.. ..-.|+++||+||-.|++.||.+
T Consensus 78 ~~~la~~l~~~~p~~~~------~~v~f~~sGseA~e~AlklAr~~ 117 (420)
T TIGR00700 78 YVALAEKLNRIAPGSGP------KKSVFFNSGAEAVENAVKIARSY 117 (420)
T ss_pred HHHHHHHHHHhCCCCCC------CEEEEeCCcHHHHHHHHHHHHHh
Confidence 44566667777632111 13589999999999999999986
No 152
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=65.08 E-value=12 Score=34.13 Aligned_cols=39 Identities=13% Similarity=0.048 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 137 IVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 137 ~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
+.++.|+++.+ |+.. ..-.|+++||+||-.|+++||.+.
T Consensus 89 ~l~~~l~~~~~-~~~~-----~~v~f~~sGsEAve~AlklAr~~t 127 (431)
T TIGR03251 89 RFVDTFARVLG-DPAL-----PHLFFIEGGALAVENALKTAFDWK 127 (431)
T ss_pred HHHHHHHHhcC-CCCc-----CEEEEeCCcHHHHHHHHHHHHHHh
Confidence 34555666642 2211 135799999999999999999864
No 153
>PRK06062 hypothetical protein; Provisional
Probab=64.93 E-value=17 Score=33.37 Aligned_cols=42 Identities=7% Similarity=-0.042 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+.|+++..-+- ..-.|+++||+||-.|+++||.+.
T Consensus 95 ~~~~~lae~L~~~~p~~~-------~~v~f~~SGsEAve~AlklAr~~t 136 (451)
T PRK06062 95 DARSEAARLIAERAPGDL-------SKVFFTNGGADANEHAVRMARLHT 136 (451)
T ss_pred HHHHHHHHHHHHhCCCCC-------CEEEEcCChHHHHHHHHHHHHHhh
Confidence 444556666777763211 146899999999999999999863
No 154
>PLN02483 serine palmitoyltransferase
Probab=64.68 E-value=29 Score=32.23 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=55.5
Q ss_pred CCcCCCCCcceeccCCCChhhhHHHHHHhhcccCcccc---cCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecC
Q 036996 88 LTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNW---LASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHG 164 (214)
Q Consensus 88 ~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~---~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~ts 164 (214)
..++++-.|+|+-...+.....+.+.+...--....+. ...+...++|+. +++++|-++ -++.+
T Consensus 102 ~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~----lA~~~g~~~---------ai~~~ 168 (489)
T PLN02483 102 CLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEEL----VARFVGKPA---------AIVFG 168 (489)
T ss_pred EEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHH----HHHHhCCCc---------EEEEC
Confidence 35677888999875444444444555544322111222 234455556555 455556443 35556
Q ss_pred CchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 165 STCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 165 GGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
.|+.+|+.++.+- + +. .. .|++.+-.|.|+..++++
T Consensus 169 ~G~~an~~~i~al----~---~~-----Gd-~Vi~d~~~h~s~~~~~~~ 204 (489)
T PLN02483 169 MGYATNSTIIPAL----I---GK-----GG-LIISDSLNHNSIVNGARG 204 (489)
T ss_pred CHHHHHHHHHHHh----C---CC-----CC-EEEEcchhhHHHHHHHHH
Confidence 6777888554431 1 11 12 355788999999887754
No 155
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=64.60 E-value=33 Score=30.04 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHh
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSA 211 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa 211 (214)
..+..++.+|+++++|.++ .+++++|+++|..++.+. + + +.-.|++.+-.|++...++
T Consensus 86 ~~l~~~l~~~la~~~g~~~---------~i~~tsG~~a~~~~~~~l----~---~------~gd~vi~~~~~~~~~~~~~ 143 (397)
T PRK06939 86 QDLHKELEEKLAKFLGTED---------AILYSSCFDANGGLFETL----L---G------KEDAIISDALNHASIIDGV 143 (397)
T ss_pred cHHHHHHHHHHHHHhCCCc---------EEEEcChHHHHHHHHHHh----C---C------CCCEEEEEhhhhHHHHHHH
Confidence 4566778899999998653 355555588877765432 1 1 1123556788999987766
Q ss_pred hc
Q 036996 212 KL 213 (214)
Q Consensus 212 ~l 213 (214)
++
T Consensus 144 ~~ 145 (397)
T PRK06939 144 RL 145 (397)
T ss_pred Hh
Confidence 54
No 156
>PRK12414 putative aminotransferase; Provisional
Probab=64.56 E-value=44 Score=29.57 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 129 PVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 129 p~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
.+...+.+.+.+|+.+++|.+-+. ...-++|+||++++..++.+
T Consensus 66 ~G~~~lr~~ia~~l~~~~g~~~~~----~~~i~it~g~~~al~~~~~~ 109 (384)
T PRK12414 66 AGIAALREALAEKTERLYGARYDP----ASEVTVIASASEGLYAAISA 109 (384)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCC----CCcEEEECChHHHHHHHHHH
Confidence 345678889999999999985210 01468999999887665543
No 157
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=64.44 E-value=27 Score=31.35 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=42.9
Q ss_pred CCCCcceeccCCCC--hhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHH
Q 036996 92 QSPNFFGYFQANAS--TAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCES 169 (214)
Q Consensus 92 ~~pr~~g~~~~~~~--~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~a 169 (214)
..|+|. ++|+ .+++.-+.+. +..+...-.+|-+.++=+++.+.|.++++.|++. ..-+++++||.+
T Consensus 3 ~~~~f~----~gp~~~~~~~~~~~~~---~~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~-----~v~~l~GsGT~a 70 (374)
T TIGR01365 3 ANPCFS----SGPCAKRPGWSIEELK---NAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADY-----LIGIVPASDTGA 70 (374)
T ss_pred CCCCcC----CCccCCCchhhHHHHh---hhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCc-----EEEEECCchHHH
Confidence 345544 5554 3554333333 2333344678999999999999999999987543 235668888754
Q ss_pred H
Q 036996 170 L 170 (214)
Q Consensus 170 N 170 (214)
.
T Consensus 71 ~ 71 (374)
T TIGR01365 71 V 71 (374)
T ss_pred H
Confidence 3
No 158
>PLN00175 aminotransferase family protein; Provisional
Probab=64.13 E-value=63 Score=29.05 Aligned_cols=64 Identities=14% Similarity=0.077 Sum_probs=41.1
Q ss_pred hhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHH
Q 036996 108 GFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLA 175 (214)
Q Consensus 108 ~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~ 175 (214)
..+.+.+...+......|....+..++.+.+.+|+.+..|.+-+. ...-++|+|+++++..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~----~~~I~vt~G~~~al~~~~~ 133 (413)
T PLN00175 70 DFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDP----EKEVTVTSGCTEAIAATIL 133 (413)
T ss_pred HHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCCEEEeCCHHHHHHHHHH
Confidence 344566665555432334445566789999999999988864221 0136789999988766554
No 159
>PRK08960 hypothetical protein; Provisional
Probab=64.10 E-value=28 Score=30.76 Aligned_cols=63 Identities=5% Similarity=-0.051 Sum_probs=40.0
Q ss_pred hhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHH
Q 036996 108 GFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLA 175 (214)
Q Consensus 108 ~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~ 175 (214)
..+-+.+...+..+...|...+...++.+.+.+|+.+..|++-+. ..=++|+|++++...++.
T Consensus 48 ~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-----~~i~it~G~~~al~~~~~ 110 (387)
T PRK08960 48 EPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDP-----ERILVTPGGSGALLLASS 110 (387)
T ss_pred HHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCCh-----hhEEEccCcHHHHHHHHH
Confidence 334455555554333334445566788889999998887764321 246789999998776653
No 160
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=63.64 E-value=18 Score=36.80 Aligned_cols=67 Identities=12% Similarity=-0.005 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCch----HHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCch
Q 036996 130 VATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTC----ESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHF 205 (214)
Q Consensus 130 ~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt----~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~ 205 (214)
+..++=.++=+|+++++|++ .-+||+++| ++++.++.+.. +..|. + .|-+|++|..+|.
T Consensus 565 g~~~~~~~~r~~la~i~g~~---------~v~f~pnaga~ge~a~~~vi~~~~----~~~Gd---~-~r~~vli~~~aH~ 627 (993)
T PLN02414 565 GYQEMFEDLGDLLCEITGFD---------SFSLQPNAGAAGEYAGLMVIRAYH----LSRGD---H-HRNVCIIPVSAHG 627 (993)
T ss_pred HHHHHHHHHHHHHHHHhCCC---------eEEEcCCCcHHHHHHHHHHHHHHH----hccCC---C-CCCEEEeCCCcCc
Confidence 44566678889999999993 357888888 77776665552 22232 1 3456788999999
Q ss_pred HHHHHhhc
Q 036996 206 ALQKSAKL 213 (214)
Q Consensus 206 Si~KAa~l 213 (214)
|..+.+.+
T Consensus 628 sn~a~a~~ 635 (993)
T PLN02414 628 TNPASAAM 635 (993)
T ss_pred cCHHHHHH
Confidence 99888764
No 161
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=63.40 E-value=22 Score=32.29 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
+.+.++.+.++++++-+.. ..-.|+++||+||-.|+++||.+
T Consensus 83 ~~~~~la~~l~~~~p~~~~------~~v~f~~SGseA~e~AlklAr~~ 124 (425)
T PRK07495 83 ENYVRLAERLNALVPGDFA------KKTIFVTTGAEAVENAVKIARAA 124 (425)
T ss_pred HHHHHHHHHHHHhCCCCCC------CEEEECCchHHHHHHHHHHHHHh
Confidence 3445567777777742210 13579999999999999999986
No 162
>PRK06541 hypothetical protein; Provisional
Probab=62.76 E-value=22 Score=32.80 Aligned_cols=41 Identities=5% Similarity=-0.055 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 134 LESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 134 iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
...++.+.|++++.-+- ..-.|+++||+||-.|+++||.+.
T Consensus 96 ~~~~la~~l~~~~p~~~-------~~v~f~~sGseAve~AlklAr~~~ 136 (460)
T PRK06541 96 PAIELAERLAALAPGDL-------NRVFFTTGGSEAVESAWKLAKQYF 136 (460)
T ss_pred HHHHHHHHHHHhCCCCc-------CEEEEcCCcHHHHHHHHHHHHHHH
Confidence 34455666666653211 145789999999999999999874
No 163
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=62.57 E-value=27 Score=31.79 Aligned_cols=38 Identities=13% Similarity=-0.000 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHH
Q 036996 137 IVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKAL 182 (214)
Q Consensus 137 ~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~ 182 (214)
++.+.|+++.+ ..+ .-+|+++|||||=.|++.||.+..
T Consensus 88 ~la~~L~~~s~-~~d-------~vff~NSGaEA~EaAiKlARk~~~ 125 (404)
T COG4992 88 ELAEKLVELSP-FAD-------RVFFCNSGAEANEAALKLARKYTG 125 (404)
T ss_pred HHHHHHHhhCc-ccc-------EEEEcCCcHHHHHHHHHHHHHHcC
Confidence 45667777776 222 468999999999999999999985
No 164
>PRK05367 glycine dehydrogenase; Provisional
Probab=62.54 E-value=1.5e+02 Score=30.15 Aligned_cols=132 Identities=11% Similarity=0.054 Sum_probs=68.2
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhH-H------HHHHhhcccCcccccC
Q 036996 55 PGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFL-G------EMLCSGFNVVGFNWLA 127 (214)
Q Consensus 55 ~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~-~------d~l~~~~n~n~~~~~~ 127 (214)
|+.++..-+..+|+ +.+..|+++.+++.-.++.. ...|.|.=+-+...+.++ - +|+++ |-+. -.+.
T Consensus 43 P~~i~~~~~l~lp~-~~sE~e~~~~~~~la~~N~~---~~~~ig~G~y~~~~P~vi~~~i~~~~~~~t~-ytPy--Q~Ei 115 (954)
T PRK05367 43 PASIRLAEPLDLPA-ALSEAEALAELRAIASKNKV---FRSYIGQGYYGTHTPPVILRNILENPAWYTA-YTPY--QPEI 115 (954)
T ss_pred CHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCC---CCcccCCCCCCCcCcHHHHHHHHhCcchhhc-cCCC--ChHH
Confidence 44454333445663 46788999999986554432 112322211111223333 2 22221 1111 1233
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFAL 207 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si 207 (214)
|-+.-++=.+.-.++++|.|++.. .-.++.++|.+ ..|+..+++... + ++-.|++++..|.+.
T Consensus 116 sQG~Leal~~~Qt~la~LtG~~~a-------naSl~d~aTAa-~ea~~~a~~~~~---~------~~~~vlv~~~~hP~~ 178 (954)
T PRK05367 116 SQGRLEALLNFQTMVADLTGLEIA-------NASLLDEATAA-AEAMALAKRVSK---S------KSNRFFVDDDVHPQT 178 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChh-------hccccccHHHH-HHHHHHhhhhcc---C------CCCEEEEcCccCHHH
Confidence 444333334455789999999864 34577776643 346666654321 1 012567899999987
Q ss_pred HHH
Q 036996 208 QKS 210 (214)
Q Consensus 208 ~KA 210 (214)
...
T Consensus 179 ~~v 181 (954)
T PRK05367 179 LDV 181 (954)
T ss_pred HHH
Confidence 643
No 165
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=62.48 E-value=22 Score=32.54 Aligned_cols=41 Identities=15% Similarity=0.018 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 134 LESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 134 iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
.+.++.+.|++++..+-+ .=.|+++||+||-.|+++||.+.
T Consensus 93 ~~~~la~~L~~~~p~~~~-------~v~f~~sGseAve~AlklAr~~~ 133 (445)
T PRK09221 93 LAFELAERLAELAPGGLD-------HVFFTNSGSESVDTALKIALAYH 133 (445)
T ss_pred HHHHHHHHHHHhCCCCCC-------EEEEeCCcHHHHHHHHHHHHHHH
Confidence 344566777777632111 35799999999999999999875
No 166
>PRK07682 hypothetical protein; Validated
Probab=62.42 E-value=73 Score=27.93 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=33.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 125 ~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
|...+....+.+.+.+|+.+.+|.+-+. ...=++|+||++++..++.+
T Consensus 53 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~----~~~i~~t~G~~~al~~~~~~ 100 (378)
T PRK07682 53 YTANAGLLELRQEIAKYLKKRFAVSYDP----NDEIIVTVGASQALDVAMRA 100 (378)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCC----CCcEEEeCChHHHHHHHHHH
Confidence 4444566788899999999988874221 01468899999888766543
No 167
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=62.41 E-value=29 Score=32.11 Aligned_cols=67 Identities=13% Similarity=-0.012 Sum_probs=39.3
Q ss_pred hhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHH
Q 036996 106 TAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALE 183 (214)
Q Consensus 106 ~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~ 183 (214)
....+.+.+...-..+......-| +. ++.+.|+++.. ++. ...-+||++||+||=+|++.||++...
T Consensus 65 i~~Ai~~Q~~~l~~~~~~~~t~~P-a~----~LA~~L~~~aP--~~~----l~~vFf~~sGSeAvEtAlKma~qY~~~ 131 (449)
T COG0161 65 IAEAIKKQLDKLPHVMFGGFTHEP-AI----ELAEKLAELAP--EGG----LDHVFFTDSGSEAVETALKMALQYWRA 131 (449)
T ss_pred HHHHHHHHHHhCCchhhcccCCch-HH----HHHHHHHHhCC--CCC----ccEEEEeCCchHHHHHHHHHHHHHHHh
Confidence 344444444443333333445556 33 23445556553 110 024689999999999999999998753
No 168
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=62.30 E-value=34 Score=31.23 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+.|++++. ... ..=.|+.+||+||-.|+++||.+.
T Consensus 87 ~~~~~lae~L~~~~p--~~~-----~~v~f~~sGseAve~AlklAr~~~ 128 (429)
T PRK06173 87 EPAVELAQKLLEILP--PSL-----NKIFFADSGSVAVEVAMKMALQYQ 128 (429)
T ss_pred HHHHHHHHHHHhhCC--CCc-----CEEEEeCCchHHHHHHHHHHHHHH
Confidence 344566677777763 211 145799999999999999999874
No 169
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=62.06 E-value=23 Score=31.87 Aligned_cols=37 Identities=11% Similarity=-0.040 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 136 SIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 136 ~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
.++.+.+++.+.-++ .=+||.|||+||..|+++||.+
T Consensus 91 ~~lae~l~~~~~~~~--------~v~~~~sGseA~e~Alk~ar~~ 127 (423)
T TIGR00713 91 ILLAKEIISRVPSVE--------MVRFVNSGTEATMSAVRLARGY 127 (423)
T ss_pred HHHHHHHHHhCCccc--------EEEEeCCHHHHHHHHHHHHHHh
Confidence 344555556553332 3589999999999999999986
No 170
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=61.60 E-value=42 Score=30.31 Aligned_cols=42 Identities=12% Similarity=0.006 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 134 LESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 134 iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
.+.++.+.++++.+.+-. ..=+|+++|++||-.||++||...
T Consensus 85 ~~~~la~~l~~~~~~~~~------~~~~f~~sGsea~e~Alklar~~~ 126 (425)
T PRK08088 85 PYLELCEKMNQKVPGDFA------KKTLLVTTGSEAVENAVKIARAAT 126 (425)
T ss_pred HHHHHHHHHHHhCCCCCC------CEEEEeCCcHHHHHHHHHHHHHHh
Confidence 344778888888764321 134788888999999999999863
No 171
>PRK08912 hypothetical protein; Provisional
Probab=61.51 E-value=81 Score=27.76 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHH
Q 036996 130 VATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLA 175 (214)
Q Consensus 130 ~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~ 175 (214)
+..++.+.+.+|+.+..|.+-+. ...-++|+|+++++..++.
T Consensus 64 G~~~lr~~ia~~~~~~~g~~~~~----~~~i~~t~G~~~al~~~~~ 105 (387)
T PRK08912 64 GLPELRQAVAAHYARFQGLDLDP----ETEVMVTSGATEALAAALL 105 (387)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCC----cccEEEeCCcHHHHHHHHH
Confidence 44678889999999888874321 0146789999988755544
No 172
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=61.37 E-value=25 Score=31.86 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCC-Ccee-cCCchHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTG-GGVL-HGSTCESLVCTLAAARDK 180 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~-~G~~-tsGGt~aNl~Al~aAR~~ 180 (214)
..+.++.+.+++++..|... . .=.| +++||+||-.|+++||.+
T Consensus 82 ~~~~~lae~l~~~~~~~~~~-----~~~~~f~~~sGseA~e~AlklAr~~ 126 (425)
T PRK09264 82 TAKREFLETFEETILKPRGL-----DYKVQFTGPTGTNAVEAALKLARKV 126 (425)
T ss_pred HHHHHHHHHHHHhhcCCcCC-----CceEEEeCCCHHHHHHHHHHHHHHh
Confidence 44556667777765333221 0 1235 479999999999999986
No 173
>PRK06207 aspartate aminotransferase; Provisional
Probab=61.34 E-value=45 Score=29.86 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=30.9
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
..+...+-+.+.+|+.+.+|.+-+. ...=++|+|+++++..++.+
T Consensus 77 ~~G~~~LR~aia~~l~~~~g~~~~~----~~~I~it~Ga~~al~~~~~~ 121 (405)
T PRK06207 77 YRGDADIRELLAARLAAFTGAPVDA----ADELIITPGTQGALFLAVAA 121 (405)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCC----CCCEEEeCCcHHHHHHHHHH
Confidence 3445678888999999999974210 01467899998887666543
No 174
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=60.20 E-value=53 Score=29.46 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=45.5
Q ss_pred eeccCC-CChhhhHHHHHHhhcccCc---ccc---cCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHH
Q 036996 98 GYFQAN-ASTAGFLGEMLCSGFNVVG---FNW---LASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCES 169 (214)
Q Consensus 98 g~~~~~-~~~~~~~~d~l~~~~n~n~---~~~---~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~a 169 (214)
.|-+++ ..|..++-.+-..++|.++ ... -.+|-+.++=+++.+-|.++++.|++. .--++++|||.+
T Consensus 7 nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y-----~Vlfl~GggT~~ 80 (364)
T PRK12462 7 NFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEY-----GVVFLQGGSSLQ 80 (364)
T ss_pred eecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCC-----eEEEEeccHHHH
Confidence 333444 3467888888888888654 222 346778888899999999999998764 123444555543
No 175
>PLN02409 serine--glyoxylate aminotransaminase
Probab=60.17 E-value=37 Score=30.41 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=32.7
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHH
Q 036996 127 ASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLA 175 (214)
Q Consensus 127 ~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~ 175 (214)
.+|.+.++=+++.+++++++|.+.+. .-+++++||.++..++.
T Consensus 36 ~~~~~~~~~~~~~~~l~~~~g~~~~~------~vi~~~~gt~a~~~a~~ 78 (401)
T PLN02409 36 RSPAFPALTKELLEDVKYIFKTKSGT------PFIFPTTGTGAWESALT 78 (401)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCC------EEEEeCCcHHHHHHHHH
Confidence 36777778888999999999987542 46888888887765543
No 176
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=59.07 E-value=78 Score=28.74 Aligned_cols=96 Identities=16% Similarity=0.082 Sum_probs=58.3
Q ss_pred cceeccCCCChhhhHHHHHHhhc---ccCcc--cccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHH
Q 036996 96 FFGYFQANASTAGFLGEMLCSGF---NVVGF--NWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESL 170 (214)
Q Consensus 96 ~~g~~~~~~~~~~~~~d~l~~~~---n~n~~--~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aN 170 (214)
|+.+-.++. .+..+.|.+..++ |.|.. ....+.-+++.+.+.=+.+++++|.++.. .=+||.|.|++.
T Consensus 25 ylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~------eIvft~~tT~al 97 (405)
T COG0520 25 YLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSD------EIVFTRGTTEAL 97 (405)
T ss_pred EecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCC------eEEEeCChhHHH
Confidence 444443333 4556667777654 44433 33344456778888888999999998522 578999999886
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHH
Q 036996 171 VCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQ 208 (214)
Q Consensus 171 l~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~ 208 (214)
-.....-... + + +.-.|++|+.-|.|..
T Consensus 98 n~va~~l~~~-~---~------~gdeIv~s~~EH~sn~ 125 (405)
T COG0520 98 NLVARGLGRS-L---K------PGDEIVVSDLEHHSNI 125 (405)
T ss_pred HHHHHHhhhh-h---c------CCCEEEEccCcchhhH
Confidence 5443322211 1 1 1234567888888764
No 177
>PRK07337 aminotransferase; Validated
Probab=58.76 E-value=79 Score=27.84 Aligned_cols=60 Identities=10% Similarity=0.086 Sum_probs=38.2
Q ss_pred HHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHH
Q 036996 111 GEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLA 175 (214)
Q Consensus 111 ~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~ 175 (214)
.+.+...+......|....+...+.+.+.+|+.+..|.+-+. ..=++|+|++++...++.
T Consensus 49 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~-----~~i~~t~G~~~al~~~~~ 108 (388)
T PRK07337 49 VEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAP-----ERIVVTAGASAALLLACL 108 (388)
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh-----HhEEEecCcHHHHHHHHH
Confidence 455555554333334444456789999999999888864221 145789999988766554
No 178
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=58.70 E-value=49 Score=29.61 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHH
Q 036996 129 PVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQ 208 (214)
Q Consensus 129 p~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~ 208 (214)
+...++|+.+- +++|-++ .++.+.|+.+|+.++.+- . + +.=.|++.+.+|.|+.
T Consensus 43 ~~~~~LE~~lA----~~~g~e~---------al~~~sG~~a~~~~i~~l----~-~--------~GD~Vl~~~~~h~s~~ 96 (392)
T PLN03227 43 DAHLELEQCMA----EFLGTES---------AILYSDGASTTSSTVAAF----A-K--------RGDLLVVDRGVNEALL 96 (392)
T ss_pred HHHHHHHHHHH----HHhCCCc---------EEEecCcHHHHHHHHHHh----C-C--------CCCEEEEeccccHHHH
Confidence 34567777654 4455543 467777778888665542 1 1 1124668999999998
Q ss_pred HHhh
Q 036996 209 KSAK 212 (214)
Q Consensus 209 KAa~ 212 (214)
.++.
T Consensus 97 ~~~~ 100 (392)
T PLN03227 97 VGVS 100 (392)
T ss_pred HHHH
Confidence 8764
No 179
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=58.47 E-value=31 Score=31.24 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
.|...++|+.+.+-+++++|-+. .=+++++|+.||+.++.+-
T Consensus 69 ~~~~~~lE~~~~~~la~l~g~~~--------alv~~~SG~~A~~~~l~al 110 (416)
T PRK13034 69 CEFVDEVEALAIERAKQLFGCDY--------ANVQPHSGSQANGAVYLAL 110 (416)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCc--------eEEecCCcHHHHHHHHHHh
Confidence 47788999988889999998753 2245688899999887653
No 180
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=58.47 E-value=38 Score=31.36 Aligned_cols=45 Identities=7% Similarity=-0.063 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCCC---CCcCCCCCCceecCCchHHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPS---SFLFSGTGGGVLHGSTCESLVCTLAAARDKAL 182 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~---~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~ 182 (214)
....++.+.|++++.-.. +. ..-.|+++||+||-.|+++||.+..
T Consensus 107 ~~~~~lae~L~~~~p~~~~~~~~-----~~v~f~~sGSEAvE~AlKlAr~~~~ 154 (472)
T PRK08742 107 EPAVQLAEQLLAIAPRQDGRAPL-----SKVFYADNGSAGVEVALKMAFHYFH 154 (472)
T ss_pred HHHHHHHHHHHHhCCCcccCCCC-----CEEEEeCCchHHHHHHHHHHHHHHH
Confidence 345567777777763210 11 1458999999999999999999853
No 181
>PRK10534 L-threonine aldolase; Provisional
Probab=58.01 E-value=41 Score=28.86 Aligned_cols=40 Identities=8% Similarity=0.164 Sum_probs=29.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 125 ~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
|...|...++|+.+ ++++|.++ .++++||+++++.++.+.
T Consensus 30 Y~~~~~~~~L~~~l----a~~~g~~~---------~~v~~~g~~a~~~~l~~~ 69 (333)
T PRK10534 30 YGDDPTVNALQDYA----AELSGKEA---------ALFLPTGTQANLVALLSH 69 (333)
T ss_pred cCCCHHHHHHHHHH----HHHhCCCe---------EEEeCchHHHHHHHHHHh
Confidence 33567777888876 44567765 379999999999998754
No 182
>PRK06149 hypothetical protein; Provisional
Probab=57.84 E-value=57 Score=33.13 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 134 LESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 134 iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
...++.+.|++++ |... ..-.|+++||+||-.|++.||.+.
T Consensus 625 ~~~elae~L~~~~--p~~~-----~~v~f~~SGsEA~e~AlklAr~~t 665 (972)
T PRK06149 625 AVAEFSERLAALA--PDGL-----DTVFLVNSGSEANDLAIRLAWAAS 665 (972)
T ss_pred HHHHHHHHHHHhC--CCCc-----CEEEEeCCchHHHHHHHHHHHHhc
Confidence 3444555666666 2211 146899999999999999999873
No 183
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=57.64 E-value=42 Score=29.70 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
..+-+++-+++++++|.+ ..++|+|||+++..++.+.
T Consensus 44 ~~~~~~~~~~~a~~~g~~---------~~~~~~g~t~al~~al~al 80 (363)
T TIGR01437 44 KELVNKTGEYIANLLGVE---------DAVIVSSASAGIAQSVAAV 80 (363)
T ss_pred HHHHHHHHHHHHHhhCCC---------eEEEEcCHHHHHHHHHHHH
Confidence 355667888899999864 2589999999999998875
No 184
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=57.39 E-value=67 Score=28.21 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHH
Q 036996 130 VATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQK 209 (214)
Q Consensus 130 ~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~K 209 (214)
...++| +.+++++|-+ ..++++||+++|...+.+- + +. .+ .|++++..|.|+..
T Consensus 84 ~~~~le----~~ia~~~g~~---------~~ii~~~~~~a~~~~~~~l----~---~~-----gd-~vi~~~~~~~s~~~ 137 (393)
T TIGR01822 84 IHKELE----AKIAAFLGTE---------DTILYASCFDANGGLFETL----L---GA-----ED-AIISDALNHASIID 137 (393)
T ss_pred HHHHHH----HHHHHHhCCC---------cEEEECchHHHHHHHHHHh----C---CC-----CC-EEEEeccccHHHHH
Confidence 345566 4566666653 3678899999988554332 1 11 12 35568899999887
Q ss_pred Hhhc
Q 036996 210 SAKL 213 (214)
Q Consensus 210 Aa~l 213 (214)
++++
T Consensus 138 ~~~~ 141 (393)
T TIGR01822 138 GVRL 141 (393)
T ss_pred HHHh
Confidence 7654
No 185
>PRK08363 alanine aminotransferase; Validated
Probab=57.02 E-value=61 Score=28.73 Aligned_cols=46 Identities=13% Similarity=0.046 Sum_probs=31.8
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 127 ASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 127 ~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
..+...++++.+.+|+....|.+-+. ..=++|+|+++++..++.+.
T Consensus 68 ~~~g~~~lr~~ia~~~~~~~g~~~~~-----~~i~it~G~~~al~~~~~~~ 113 (398)
T PRK08363 68 PSEGLPELREAIVKREKRKNGVDITP-----DDVRVTAAVTEALQLIFGAL 113 (398)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCCCh-----hhEEEeCCHHHHHHHHHHHh
Confidence 34566788899999998877653221 14578899988887776543
No 186
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=56.34 E-value=76 Score=28.81 Aligned_cols=41 Identities=15% Similarity=-0.079 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHH
Q 036996 135 ESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKAL 182 (214)
Q Consensus 135 E~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~ 182 (214)
..++.+.++++++-+- ..-.|+.+||+||-.|+++||.+..
T Consensus 90 ~~~la~~l~~~~~~~~-------~~v~f~~sGseA~e~AlklAr~~~~ 130 (427)
T TIGR00508 90 AIELCQKLVKMTPNAL-------DCVFLADSGSVAVEVALKMALQYWQ 130 (427)
T ss_pred HHHHHHHHHhhCCCCC-------CEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 3456777888764221 1468999999999999999999753
No 187
>PRK06107 aspartate aminotransferase; Provisional
Probab=55.82 E-value=48 Score=29.51 Aligned_cols=61 Identities=7% Similarity=0.030 Sum_probs=38.5
Q ss_pred HHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHH
Q 036996 110 LGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLA 175 (214)
Q Consensus 110 ~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~ 175 (214)
+.+.+...+......|....+..++...+.+|+.+.+|.+-.. ..=++|+|++.++..++.
T Consensus 51 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-----~~i~~t~G~~~al~~~~~ 111 (402)
T PRK06107 51 IKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYAD-----NEITVGGGAKQAIFLALM 111 (402)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh-----hhEEEeCCHHHHHHHHHH
Confidence 4555555554332223332344567778899999888874221 246889999988887764
No 188
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=55.56 E-value=47 Score=30.08 Aligned_cols=48 Identities=6% Similarity=0.070 Sum_probs=33.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 125 ~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
|.......++.+.+.+|+.+..|++-+. ..-++|+|+|+++..++.+-
T Consensus 90 Y~~~~G~~~lr~aia~~~~~~~~~~~~~-----~~v~it~G~~~al~l~~~~l 137 (430)
T PLN00145 90 YSTCVGLLPARRAIAEYLSRDLPYELST-----DDIYLTAGCAQAIEIIMSVL 137 (430)
T ss_pred CCCCccCHHHHHHHHHHHhhccCCCCCh-----hhEEEeCCHHHHHHHHHHHh
Confidence 3334456778888888988776654221 25789999999988776653
No 189
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=55.29 E-value=34 Score=30.85 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCcee-cCCchHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVL-HGSTCESLVCTLAAARDK 180 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~-tsGGt~aNl~Al~aAR~~ 180 (214)
++.+.++.+.|++++..|... ...-.| +++||+||-.|+++||.+
T Consensus 77 ~~~~~~lae~l~~~~~~~~~~----~~~~~f~~~sGseA~e~AlklAr~~ 122 (412)
T TIGR02407 77 TEAKREFLETFNEIILKPRGL----DYKVQFPGPTGTNAVESALKLARKV 122 (412)
T ss_pred cHHHHHHHHHHHHhccCccCC----CceEEEeCCCchHHHHHHHHHHhhh
Confidence 345556777777775333221 001235 589999999999999976
No 190
>PRK06148 hypothetical protein; Provisional
Probab=54.20 E-value=21 Score=36.43 Aligned_cols=42 Identities=14% Similarity=0.027 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
..+.++.+.|++++.-+-+ .-.|+.+|||||-.||++||.+.
T Consensus 663 ~~~~~lAe~L~~~~p~~~~-------~v~f~nSGsEA~e~AlklAr~~t 704 (1013)
T PRK06148 663 DAIVAYAERLTATLPDGLT-------VAFFVNSGSEANSLALRLARAHT 704 (1013)
T ss_pred HHHHHHHHHHHHhCCCCcC-------EEEEeCCcHHHHHHHHHHHHHhc
Confidence 4455667777777632111 35799999999999999999863
No 191
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=53.27 E-value=56 Score=30.07 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKA 181 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~ 181 (214)
+..+.++.+.|+++++..... ...-+++++||+||-.|+++||.+.
T Consensus 100 ~~~~~~lAe~L~~~~p~~~~~----~~~~f~~~SGsEAve~AlklAr~~t 145 (459)
T PRK06931 100 TPLKDAFSEYLLSLLPGQGKE----YCLQFTGPSGADAVEAAIKLAKTYT 145 (459)
T ss_pred CHHHHHHHHHHHHhCCCcccc----ceEEEeCCCcHHHHHHHHHHHHHhc
Confidence 456667777888887432210 0012445899999999999999863
No 192
>PRK06225 aspartate aminotransferase; Provisional
Probab=52.56 E-value=59 Score=28.57 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 137 IVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 137 ~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
++-+++++.+|.+++ .-++|+|+|+++..++.+.
T Consensus 70 ~lr~~ia~~l~~~~~-------~v~~~~g~t~al~~~~~~~ 103 (380)
T PRK06225 70 ELRELILKDLGLDDD-------EALITAGATESLYLVMRAF 103 (380)
T ss_pred HHHHHHHHhcCCCCC-------cEEEeCCHHHHHHHHHHHh
Confidence 345667777888664 5789999999988887654
No 193
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=51.94 E-value=38 Score=30.22 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 129 PVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 129 p~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
+....+|+.+.+++++++|.+.. -+++++||.++..++.+
T Consensus 67 ~~~~~~e~~~~~~la~~~g~~~~--------~i~~~sgt~al~~~l~~ 106 (416)
T PRK00011 67 EYVDVVEQLAIDRAKELFGAEYA--------NVQPHSGSQANAAVYFA 106 (416)
T ss_pred hHHHHHHHHHHHHHHHHhCCCce--------eeecCCchHHHHHHHHH
Confidence 45567888888899999998753 25545568887665544
No 194
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=51.65 E-value=57 Score=29.06 Aligned_cols=52 Identities=8% Similarity=-0.008 Sum_probs=32.3
Q ss_pred HHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHH
Q 036996 140 DWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQK 209 (214)
Q Consensus 140 ~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~K 209 (214)
+.+ +++|.+++ .=+||+|+|+++-.++..- ++. + .++-+|+++...|.|+..
T Consensus 77 ~~~-~l~g~~~~-------~v~~~~~~t~~l~~~~~~~----~~~-~-----~~~~~i~~~~~~~~s~~~ 128 (406)
T TIGR01814 77 LKL-RLVGAKED-------EVVVMNTLTINLHLLLASF----YKP-T-----PKRYKILLEAKAFPSDHY 128 (406)
T ss_pred ccc-cccCCCCC-------cEEEeCCchHHHHHHHHHh----cCC-c-----CCccEEEecCCCCChHHH
Confidence 335 88998664 3589999998766655432 111 1 123356688899988544
No 195
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=51.50 E-value=50 Score=30.22 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHH
Q 036996 129 PVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQ 208 (214)
Q Consensus 129 p~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~ 208 (214)
|...++|+++-++ +|.+ ..++|++||++++.|+.+....+..+.+. . +.=.|+++..+|.+..
T Consensus 63 ~~~~~fe~~lA~~----~g~~---------~~v~~~sGt~al~~aL~al~~~~~~~~~~--~--pGd~VIv~~~t~~a~~ 125 (438)
T PRK15407 63 RFNDAFEKKLAEF----LGVR---------YALLVNSGSSANLLAFSALTSPKLGDRAL--K--PGDEVITVAAGFPTTV 125 (438)
T ss_pred hhHHHHHHHHHHH----hCCC---------eEEEECCHHHHHHHHHHHHhhccccccCC--C--CCCEEEECCCCcHHHH
Confidence 4445677665544 5543 35889999999999998764333221111 0 1123456778888776
Q ss_pred HHhh
Q 036996 209 KSAK 212 (214)
Q Consensus 209 KAa~ 212 (214)
.++.
T Consensus 126 ~~v~ 129 (438)
T PRK15407 126 NPII 129 (438)
T ss_pred HHHH
Confidence 6553
No 196
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=51.15 E-value=1.2e+02 Score=26.72 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 129 PVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 129 p~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
.+..++++.+.+|+....|.+-.. ...=++|+|+++++..++.+
T Consensus 67 ~g~~~lr~~ia~~~~~~~~~~~~~----~~~i~it~G~~~al~~~~~~ 110 (391)
T PRK07309 67 AGLLELRQAAADFVKEKYNLDYAP----ENEILVTIGATEALSASLTA 110 (391)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCC----CCcEEEeCChHHHHHHHHHH
Confidence 345788899999998887763110 01457899999988777664
No 197
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=50.88 E-value=12 Score=32.98 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHc-CCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHH
Q 036996 134 LESIVMDWMGKML-KLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKAL 182 (214)
Q Consensus 134 iE~~vi~wl~~l~-G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~ 182 (214)
+-.++++....+. -+|+= ..-+|+..|||+|=.||.+||+...
T Consensus 84 lhd~lv~cA~~l~stlPeL------svc~F~NSGSEANDLALRLAR~ftk 127 (452)
T KOG1403|consen 84 LHDELVQCARTLTSTLPEL------SVCFFVNSGSEANDLALRLARNFTK 127 (452)
T ss_pred hHHHHHHHHHHHhhcCCCc------eEEEEecCCchhhHHHHHHHHhhcc
Confidence 3444444444443 24552 3568999999999999999999753
No 198
>PLN02187 rooty/superroot1
Probab=50.22 E-value=1.4e+02 Score=27.48 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=32.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 125 ~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
|...++...+.+.+.+|+.+..|++-+. ..=++|+|+++++..++.+-
T Consensus 104 Y~~~~G~~~lR~aiA~~~~~~~~~~~~~-----~~I~it~G~~~al~~~~~~l 151 (462)
T PLN02187 104 YGPGAGILPARRAVADYMNRDLPHKLTP-----EDIFLTAGCNQGIEIVFESL 151 (462)
T ss_pred CCCCCChHHHHHHHHHHHHHhcCCCCCc-----ccEEEeCCHHHHHHHHHHHh
Confidence 3344456678888899998877664221 24678999998887766543
No 199
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=50.05 E-value=1.1e+02 Score=26.40 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=49.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCC-ceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCC
Q 036996 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGG-GVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQT 203 (214)
Q Consensus 125 ~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~-G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~a 203 (214)
+..+.+..+++..+.+|+.+--|.+.+. . .+++++|+.+.+..+..... .. +.-.|++.+-+
T Consensus 40 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~------~~~i~~~~G~~~~~~~~~~~~~-----~~------~~~~vlv~~P~ 102 (363)
T PF00155_consen 40 YPPPQGYPELREAIADFLGRRYGVPVDP------EANILVTSGAQAALFLLLRLLK-----IN------PGDTVLVPDPC 102 (363)
T ss_dssp STCTTHHHHHHHHHHHHHHHHHTHHTTG------GEGEEEESHHHHHHHHHHHHHH-----SS------TTSEEEEEESS
T ss_pred CCCchhhHHHHHHHHHHhhhccCccccc------ceEEEEecccccchhhhhhccc-----cc------ccccceecCCc
Confidence 4444567889999999999777776653 4 78888888888877655543 11 12245667788
Q ss_pred chHHHHHhhc
Q 036996 204 HFALQKSAKL 213 (214)
Q Consensus 204 H~Si~KAa~l 213 (214)
|..+..+++.
T Consensus 103 y~~~~~~~~~ 112 (363)
T PF00155_consen 103 YPSYIEAARL 112 (363)
T ss_dssp STHHHHHHHH
T ss_pred cccccccccc
Confidence 8887777654
No 200
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=50.03 E-value=26 Score=22.87 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=29.2
Q ss_pred HHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCC
Q 036996 111 GEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSS 151 (214)
Q Consensus 111 ~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~ 151 (214)
.+.+..+.+.......-.|..+..|+.+|.-+|+-+|+...
T Consensus 5 ~~~i~~F~~~~~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~ 45 (59)
T cd06007 5 NKALEDFRASDNEEYEFPSSLTNHERAVIHRLCRKLGLKSK 45 (59)
T ss_pred HHHHHHHHcCcccEEEcCCCCCHHHHHHHHHHHHHcCCCce
Confidence 34555555554333445566899999999999999999753
No 201
>PLN02724 Molybdenum cofactor sulfurase
Probab=50.00 E-value=1e+02 Score=30.61 Aligned_cols=97 Identities=9% Similarity=-0.056 Sum_probs=52.8
Q ss_pred CcceeccCCCChhhhHHHHHHhhcc---cCccc-ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHH
Q 036996 95 NFFGYFQANASTAGFLGEMLCSGFN---VVGFN-WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESL 170 (214)
Q Consensus 95 r~~g~~~~~~~~~~~~~d~l~~~~n---~n~~~-~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aN 170 (214)
-|+.+-.+++.++..+-+++..++. .|... ...+..++.+=.++=+.+++++|.++.. ..=+||+|+|+|+
T Consensus 36 iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~-----~~VvFtsnaT~al 110 (805)
T PLN02724 36 VYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSD-----YACVFTSGATAAL 110 (805)
T ss_pred EeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccc-----eEEEEeCChHHHH
Confidence 4666654444444555555544432 23221 2233334544556677899999986531 0248999999996
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHH
Q 036996 171 VCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQ 208 (214)
Q Consensus 171 l~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~ 208 (214)
-.... - ++ .. . .. .|+++..-|.|+.
T Consensus 111 nlva~---~--l~--~~--~--gd-~Iv~t~~eH~svl 136 (805)
T PLN02724 111 KLVGE---T--FP--WS--S--ES-HFCYTLENHNSVL 136 (805)
T ss_pred HHHHH---H--CC--CC--C--CC-eEEEeeccccchH
Confidence 64422 1 11 11 0 12 3445788888876
No 202
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=49.12 E-value=94 Score=27.99 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=45.5
Q ss_pred hhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHH
Q 036996 107 AGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARD 179 (214)
Q Consensus 107 ~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~ 179 (214)
+.-+-+.+...++.....+..+.+..++-+.+.+++.+..|.+-.. ...=++|.|++++++.++.+--+
T Consensus 43 p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~----~~eiivt~Ga~~al~~~~~a~~~ 111 (393)
T COG0436 43 PEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDP----EEEIIVTAGAKEALFLAFLALLN 111 (393)
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCeEEEeCCHHHHHHHHHHHhcC
Confidence 3434455555444432134455667789999999999998854321 01379999999999988876543
No 203
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=48.35 E-value=84 Score=27.63 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=50.9
Q ss_pred CcCCCCCcceeccCCCChhhhHHHHHHhhcccC---cccccCCh---hHHHHHHHHHHHHHHHcCCCCCCcCCCCCCcee
Q 036996 89 THWQSPNFFGYFQANASTAGFLGEMLCSGFNVV---GFNWLASP---VATELESIVMDWMGKMLKLPSSFLFSGTGGGVL 162 (214)
Q Consensus 89 ~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n---~~~~~~sp---~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~ 162 (214)
+++.+=.|+|+-..++-..+ +.+.+.....+. +.....+. ....+=.+.=+.+++++|.++ .++
T Consensus 7 ~~~~s~~YL~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~---------~l~ 76 (370)
T PRK05937 7 IDFVTNDFLGFSRSDTLVHE-VEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE---------AFI 76 (370)
T ss_pred EEeECCCccCCCCCHHHHHH-HHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe---------EEE
Confidence 45666677777655433333 334444433221 01111111 122333333455677777754 255
Q ss_pred cCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 163 HGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 163 tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
.+.|+.+|+ ++..+ +. + +.-.|+.....|.|+..++++
T Consensus 77 ~~sG~~a~~-~~~~~----~~--~------~~d~ii~d~~~H~sv~~~~~~ 114 (370)
T PRK05937 77 VPSGYMANL-GLCAH----LS--S------VTDYVLWDEQVHISVVYSLSV 114 (370)
T ss_pred ECChHHHHH-HHHHH----hC--C------CCCEEEEEhhhhHHHHHHHHH
Confidence 555567885 32211 11 1 122566779999999988764
No 204
>PLN02452 phosphoserine transaminase
Probab=48.35 E-value=1.4e+02 Score=26.71 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=47.4
Q ss_pred CCcceeccCC-CChhhhHHHHHHhhcccCc---ccc---cCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCc
Q 036996 94 PNFFGYFQAN-ASTAGFLGEMLCSGFNVVG---FNW---LASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGST 166 (214)
Q Consensus 94 pr~~g~~~~~-~~~~~~~~d~l~~~~n~n~---~~~---~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGG 166 (214)
.|-+.+-+++ ..+..++..+....+|-+. ... -.+|-+.++=+++.+-|.++++.|+++ ..-++++||
T Consensus 6 ~~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y-----~v~~l~Gsg 80 (365)
T PLN02452 6 GRVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNY-----EVLFLQGGA 80 (365)
T ss_pred CceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCc-----eEEEEeCcc
Confidence 3444555555 4467788888888776542 122 346777888889999999999998764 134445666
Q ss_pred hHHH
Q 036996 167 CESL 170 (214)
Q Consensus 167 t~aN 170 (214)
|.+.
T Consensus 81 t~~~ 84 (365)
T PLN02452 81 STQF 84 (365)
T ss_pred HHHH
Confidence 6443
No 205
>PRK07324 transaminase; Validated
Probab=48.01 E-value=37 Score=29.99 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 131 ATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 131 ~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
..++++.+.+|+. +.+++ .-++|+|+++++..++.+.
T Consensus 64 ~~~lr~~ia~~~~---~~~~~-------~vi~t~G~~~al~~~~~~l 100 (373)
T PRK07324 64 SPEFKEAVASLYQ---NVKPE-------NILQTNGATGANFLVLYAL 100 (373)
T ss_pred CHHHHHHHHHHhc---CCChh-------hEEEcCChHHHHHHHHHHh
Confidence 3456666655553 23332 3578888888887776543
No 206
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.82 E-value=1.5e+02 Score=26.53 Aligned_cols=124 Identities=15% Similarity=0.228 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCC-----CChhHHhh----------cC----CCCCCCCCCCHHHHHHH
Q 036996 22 EPKSFSDESKAVIDFIADYYKNIEKY---PVQSK-----VEPGYLSA----------RL----PDTAPHSPESLDDILKD 79 (214)
Q Consensus 22 ~~~~~~~~~~~~~~~i~~~~~~~~~~---pv~~~-----~~~~~l~~----------~~----~~~lP~~g~~~~~il~~ 79 (214)
+++...+.++++++-+..++..-..+ |+... ...+.|+. .+ ...-++++....++.+.
T Consensus 2 tR~~w~~~~~~ll~p~~~~~s~~~~~~~~P~~~~a~~~~~~a~~LEgfaR~l~g~ap~l~~~~~~~~~~~~~~~~~~~~~ 81 (361)
T PF10022_consen 2 TRADWVEALDKLLEPLLPYLSPGGARIRMPGESGAHYDRKAADYLEGFARPLWGAAPWLAGGGEDDDTEEGKLREKLREL 81 (361)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCcCCcCcchhHHHHHHHHHHHHHHHHHhcCCCcCcccccccHHHHHHH
Confidence 56778888899999999888765443 22221 11111221 11 12234556677888888
Q ss_pred HhHhhcCCCCcCCCCCcceeccCC-CChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCC
Q 036996 80 VTDCILPGLTHWQSPNFFGYFQAN-ASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLP 149 (214)
Q Consensus 80 l~~~~~~~~~~~~~pr~~g~~~~~-~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p 149 (214)
..+-+..+ ++..||.|+|++... ...+....=.++-...+. ..|+. ...+--+.|++||.+.-+..
T Consensus 82 ~~~gi~~G-tdP~spdyw~~~~~~dQ~~VEaa~la~aL~~a~~-~lW~~--L~~~~k~~l~~wL~~~~~~~ 148 (361)
T PF10022_consen 82 YRKGIANG-TDPKSPDYWGFIGDYDQRLVEAASLALALLRAPE-WLWDP--LDEEEKENLVDWLKQIRGIK 148 (361)
T ss_pred HHHHHHhc-CCCCCccccCCcccchhhHhHHHHHHHHHHHCHH-HHHhh--CCHHHHHHHHHHHHhcCcCC
Confidence 88877655 678999999998655 333333222222222322 34543 22345667889998876653
No 207
>PRK07550 hypothetical protein; Provisional
Probab=47.17 E-value=1e+02 Score=27.13 Aligned_cols=44 Identities=7% Similarity=-0.000 Sum_probs=28.9
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
.++..+++..+.+++.+..|.+-+. ..=++|+|+++++..++.+
T Consensus 66 ~~G~~~lr~~ia~~~~~~~g~~~~~-----~~i~~t~G~~~al~~~~~~ 109 (386)
T PRK07550 66 VEGLPELREAYAAHYSRLYGAAISP-----EQVHITSGCNQAFWAAMVT 109 (386)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCc-----ceEEEecCcHHHHHHHHHH
Confidence 3456778888888888877754221 1456788888776665544
No 208
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=46.92 E-value=1.3e+02 Score=25.75 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=25.4
Q ss_pred ceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhhc
Q 036996 160 GVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213 (214)
Q Consensus 160 G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~l 213 (214)
.+++++|+++++.++.+. . .. .+ .|++.+-.|.+...++.+
T Consensus 79 ~i~~~~G~~~~~~~l~~~----~---~~-----gd-~v~~~~~~~~~~~~~~~~ 119 (360)
T TIGR00858 79 ALLFSSGYLANVGVISAL----V---GK-----GD-LILSDALNHASLIDGCRL 119 (360)
T ss_pred EEEECchHHHHHHHHHHh----C---CC-----CC-EEEEEccccHHHHHHHHh
Confidence 467777788888654433 1 11 12 345677889888877653
No 209
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=45.75 E-value=1.4e+02 Score=26.53 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=37.9
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchH
Q 036996 127 ASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFA 206 (214)
Q Consensus 127 ~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~S 206 (214)
.+|...++|+.+-+++ |.+ ..++|+|||+++..++.+.. + + +.=.|+++..+|.+
T Consensus 31 ~g~~~~~le~~la~~~----g~~---------~~v~~~sgt~al~lal~al~---~---~------~Gd~Viv~~~~~~~ 85 (379)
T PRK11658 31 TGPKNQALEQAFCQLT----GNQ---------HAIAVSSATAGMHITLMALG---I---G------PGDEVITPSLTWVS 85 (379)
T ss_pred CCHhHHHHHHHHHHHh----CCC---------eEEEECCHHHHHHHHHHHcC---C---C------CCCEEEECCCcHHH
Confidence 4677778887765554 543 25789999999888876541 1 1 11134567777777
Q ss_pred HHHHhh
Q 036996 207 LQKSAK 212 (214)
Q Consensus 207 i~KAa~ 212 (214)
...++.
T Consensus 86 ~~~~~~ 91 (379)
T PRK11658 86 TLNMIV 91 (379)
T ss_pred HHHHHH
Confidence 665543
No 210
>PRK05942 aspartate aminotransferase; Provisional
Probab=45.48 E-value=1.2e+02 Score=26.83 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 130 VATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 130 ~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
+..++.+.+.+|+.+..|.+-+. ...-++|+|++++....+.+
T Consensus 74 G~~~lr~aia~~~~~~~~~~~~~----~~~i~vt~G~~~al~~~~~~ 116 (394)
T PRK05942 74 GTASFRQAITDWYHRRYGVELDP----DSEALPLLGSKEGLTHLALA 116 (394)
T ss_pred CCHHHHHHHHHHHHHHHCCCcCC----CCeEEEccChHHHHHHHHHH
Confidence 34578889999998887764221 00246788988888776544
No 211
>PRK08636 aspartate aminotransferase; Provisional
Probab=44.70 E-value=1.2e+02 Score=26.96 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCCCCC-CceecCCchHHHHHHHHH
Q 036996 129 PVATELESIVMDWMGKMLKLPSSFLFSGTG-GGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 129 p~~~~iE~~vi~wl~~l~G~p~~~~~~~~~-~G~~tsGGt~aNl~Al~a 176 (214)
.+...+-..+.+|+.+..|++-+. . .=++|+|++++....+.+
T Consensus 71 ~G~~~lR~~ia~~l~~~~~~~~~~-----~~~I~it~G~~~al~~~~~~ 114 (403)
T PRK08636 71 KGIYKLRLAICNWYKRKYNVDLDP-----ETEVVATMGSKEGYVHLVQA 114 (403)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCC-----CCeEEECCChHHHHHHHHHH
Confidence 345678888899998888865321 1 246888888877666543
No 212
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=44.43 E-value=1e+02 Score=27.20 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHHHHHhh
Q 036996 136 SIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAK 212 (214)
Q Consensus 136 ~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si~KAa~ 212 (214)
+++-+++++.+|.+ .-++|+|||.++..++.+. .. + +.=.|+++.-+|.+...++.
T Consensus 34 ~~~e~~la~~~g~~---------~~v~~~sgt~al~~~l~~~---~~---~------~Gd~Viv~~~t~~~~~~~~~ 89 (375)
T PRK11706 34 RRCQQWLEQRFGSA---------KVLLTPSCTAALEMAALLL---DI---Q------PGDEVIMPSYTFVSTANAFV 89 (375)
T ss_pred HHHHHHHHHHhCCC---------eEEEECCHHHHHHHHHHHh---CC---C------CCCEEEECCCCcHHHHHHHH
Confidence 34445667777663 3578999998876665433 00 1 11134567777877776654
No 213
>PLN02955 8-amino-7-oxononanoate synthase
Probab=42.60 E-value=91 Score=29.12 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH--HHHHhCCCCCCCCceEEEEeCCCchHHHHH
Q 036996 133 ELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK--ALEKLGGGFDNITKLAVYASDQTHFALQKS 210 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~--~~~~~~~g~~~~~~~~i~~s~~aH~Si~KA 210 (214)
.+..++=+.|++++|.++ -++.+.|..+|+.++.+--.. .++..+.- ...+..+||+=+.+|.|+.-+
T Consensus 147 ~~h~~LE~~LA~f~g~e~---------all~sSGy~AN~~~i~aL~~~~~~~~~~~~~-~~~~~d~i~~D~~~HaSI~dG 216 (476)
T PLN02955 147 TYHRLLESSLADLKKKED---------CLVCPTGFAANMAAMVAIGSVASLLAASGKP-LKNEKVAIFSDALNHASIIDG 216 (476)
T ss_pred HHHHHHHHHHHHHHCCCc---------EEEECChHHHHHHHHHHHhhccccccccccc-cCCCCcEEEEeccchHHHHHH
Confidence 344445556777778765 478888899999887653110 01100100 001345677778899999998
Q ss_pred hhc
Q 036996 211 AKL 213 (214)
Q Consensus 211 a~l 213 (214)
+++
T Consensus 217 ~~l 219 (476)
T PLN02955 217 VRL 219 (476)
T ss_pred HHh
Confidence 865
No 214
>PLN02368 alanine transaminase
Probab=41.87 E-value=1.5e+02 Score=26.80 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=33.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 125 ~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
|..+.+..++-..+.+|+.+..|++-+. -.=++|+|++++...++.+.
T Consensus 103 Y~~~~G~~~LR~aia~~~~~~~g~~~~~-----~~I~it~Ga~~al~~~~~~l 150 (407)
T PLN02368 103 YSDSRGLPGVRKEVAEFIERRDGYPSDP-----ELIFLTDGASKGVMQILNAV 150 (407)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCh-----hhEEEcccHHHHHHHHHHHH
Confidence 3333344678888999999888865221 15678999998887776554
No 215
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=41.84 E-value=83 Score=28.27 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=28.4
Q ss_pred HHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHh
Q 036996 139 MDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKL 185 (214)
Q Consensus 139 i~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~ 185 (214)
-+.+.++|||+.- +=+..|.|++=+|+++||.|....+
T Consensus 107 ~~~vt~lf~~~kv---------lpmnTGaEa~Eta~KLaR~wgy~~K 144 (427)
T KOG1402|consen 107 AEYVTKLFGYDKV---------LPMNTGAEAVETACKLARKWGYRKK 144 (427)
T ss_pred HHHHHHhcCccee---------eecccchhHHHHHHHHHHHHHHhhc
Confidence 3567789999752 2245558999999999999876554
No 216
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=41.77 E-value=95 Score=28.45 Aligned_cols=41 Identities=12% Similarity=0.018 Sum_probs=31.8
Q ss_pred cccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 124 NWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 124 ~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
.|..++...++|+.+-+|+ |.+ ..++|+|||+++..++.+-
T Consensus 48 ~Y~~~~g~~~Leeaia~~~----g~~---------~vv~t~~Gt~Al~la~~al 88 (431)
T cd00617 48 AYAGSKSFYDLEDAVQDLF----GFK---------HIIPTHQGRGAENILFSIL 88 (431)
T ss_pred ccCCCCCHHHHHHHHHHHH----CCC---------eEEEcCCHHHHHHHHHHHh
Confidence 4777888889999876655 553 3689999999999887654
No 217
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=41.26 E-value=2.6e+02 Score=24.86 Aligned_cols=93 Identities=5% Similarity=-0.164 Sum_probs=48.4
Q ss_pred CCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCC--ChhhhHHHHHHhhccc-----CcccccCChhHHHHHHHHHHHHH
Q 036996 71 ESLDDILKDVTDCILPGLTHWQSPNFFGYFQANA--STAGFLGEMLCSGFNV-----VGFNWLASPVATELESIVMDWMG 143 (214)
Q Consensus 71 ~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~--~~~~~~~d~l~~~~n~-----n~~~~~~sp~~~~iE~~vi~wl~ 143 (214)
..++++.+.+.+.-. .+..+.....=.+.+ .++..+.+.+...++. ....|...++...+-+.+.+|+.
T Consensus 15 ~~~~~~~~~~~~~~~----~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 90 (409)
T PRK07590 15 YLFPEIARRVNAFRE----ANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDY 90 (409)
T ss_pred chHHHHHHHHHHHhh----hcCCCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHH
Confidence 346677776666432 222232222211111 1233445555555543 22334445566778888889988
Q ss_pred HHcCCCCCCcCCCCCCceecCCchHHHHH
Q 036996 144 KMLKLPSSFLFSGTGGGVLHGSTCESLVC 172 (214)
Q Consensus 144 ~l~G~p~~~~~~~~~~G~~tsGGt~aNl~ 172 (214)
+..|++-+. -.=++|+|++++...
T Consensus 91 ~~~g~~~~~-----~~I~it~Ga~~al~~ 114 (409)
T PRK07590 91 QARGCDISA-----DEIFISDGAKCDTGN 114 (409)
T ss_pred HhcCCcCCh-----hhEEECCCHHHHHHH
Confidence 777664321 145678887776543
No 218
>PRK08068 transaminase; Reviewed
Probab=41.06 E-value=1.6e+02 Score=25.96 Aligned_cols=61 Identities=10% Similarity=-0.077 Sum_probs=36.1
Q ss_pred HHHHHHhhcccCc-ccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCC-CceecCCchHHHHHHHH
Q 036996 110 LGEMLCSGFNVVG-FNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTG-GGVLHGSTCESLVCTLA 175 (214)
Q Consensus 110 ~~d~l~~~~n~n~-~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~-~G~~tsGGt~aNl~Al~ 175 (214)
+.+.+...++... ..|...++..++.+.+.+|+.+..|.+-+. . .-++|+||+++...++.
T Consensus 50 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~-----~~~i~it~G~~~~l~~~~~ 112 (389)
T PRK08068 50 IVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDP-----ETEVAILFGGKAGLVELPQ 112 (389)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CccEEEcCCcHHHHHHHHH
Confidence 3455555544321 123233456788889999998877864321 1 24688888887766433
No 219
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=40.84 E-value=85 Score=28.92 Aligned_cols=41 Identities=15% Similarity=0.033 Sum_probs=31.1
Q ss_pred ccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 123 FNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 123 ~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
..|..++...++|+.+.+|+ |.. ..++|+|||+++..++.+
T Consensus 72 ~~Y~~~~g~~~Lreaia~~~----~~~---------~vv~t~ggt~A~~~~~~a 112 (460)
T PRK13238 72 EAYAGSRSYYRLEDAVKDIF----GYP---------YTIPTHQGRAAEQILFPV 112 (460)
T ss_pred cccCCCCCHHHHHHHHHHHh----CCC---------cEEECCCHHHHHHHHHHH
Confidence 35777788888988776666 432 369999999999988654
No 220
>PRK05957 aspartate aminotransferase; Provisional
Probab=40.49 E-value=1.5e+02 Score=26.23 Aligned_cols=62 Identities=10% Similarity=-0.033 Sum_probs=35.2
Q ss_pred HHHHHHhhcc-cCcccccCChhHHHHHHHHHHHHHHHcCCCCC-CcCCCCCCceecCCchHHHHHHHHH
Q 036996 110 LGEMLCSGFN-VVGFNWLASPVATELESIVMDWMGKMLKLPSS-FLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 110 ~~d~l~~~~n-~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~-~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
+.+.+...++ .....+....+...+-..+.+++++.+|.+-+ . ..-++|+|++++...++.+
T Consensus 45 ~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~-----~~i~~t~G~~~~l~~~~~~ 108 (389)
T PRK05957 45 AIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNE-----QAIVVTAGSNMAFMNAILA 108 (389)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----CeEEEeCChHHHHHHHHHH
Confidence 3444444432 22222333334455667778888888887421 1 1467888988877665543
No 221
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=40.27 E-value=1.5e+02 Score=29.66 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=21.1
Q ss_pred CceecCCchHHHHHHHHHHHHHHHH
Q 036996 159 GGVLHGSTCESLVCTLAAARDKALE 183 (214)
Q Consensus 159 ~G~~tsGGt~aNl~Al~aAR~~~~~ 183 (214)
.-+||.+||+||=.||+.||++...
T Consensus 429 rVffs~sGSeAvE~AlKmA~r~y~~ 453 (817)
T PLN02974 429 RVFFSDNGSTAIEVALKMAFRKFIV 453 (817)
T ss_pred EEEECCchHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999875443
No 222
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=39.69 E-value=2.5e+02 Score=24.68 Aligned_cols=27 Identities=7% Similarity=0.235 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 036996 20 DLEPKSFSDESKAVIDFIADYYKNIEK 46 (214)
Q Consensus 20 ~~~~~~~~~~~~~~~~~i~~~~~~~~~ 46 (214)
+.+.+++.++.+..++.+.+...++..
T Consensus 94 ~~~~~eL~~l~~~li~~~N~l~~~i~~ 120 (318)
T PF12725_consen 94 EYSTEELKELTEYLIEKANELREQITE 120 (318)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 689999999999999999998777654
No 223
>PRK08175 aminotransferase; Validated
Probab=39.50 E-value=1.7e+02 Score=25.82 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=29.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHH
Q 036996 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTL 174 (214)
Q Consensus 125 ~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al 174 (214)
|....+..++.+.+.+|+.+..|++-+. ...-++|+|++++....+
T Consensus 63 Y~~~~G~~~lr~aia~~~~~~~g~~~~~----~~~i~~t~G~~~~l~~~~ 108 (395)
T PRK08175 63 YSTSRGIPRLRRAISRWYQDRYDVDIDP----ESEAIVTIGSKEGLAHLM 108 (395)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCcEEEccCcHHHHHHHH
Confidence 3333445678888999998887775321 013567888877765443
No 224
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=39.34 E-value=1.5e+02 Score=25.61 Aligned_cols=43 Identities=7% Similarity=0.071 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCCCCC-CceecCCchHHHHHHHHH
Q 036996 129 PVATELESIVMDWMGKMLKLPSSFLFSGTG-GGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 129 p~~~~iE~~vi~wl~~l~G~p~~~~~~~~~-~G~~tsGGt~aNl~Al~a 176 (214)
.+...+.+.+.+|+.+..|.+-+. . .=++|+|++++...++.+
T Consensus 36 ~G~~~lr~aia~~~~~~~g~~~~~-----~~~Iiit~Gs~~ai~~~~~~ 79 (350)
T TIGR03537 36 LGTKALREAISGWFERRFGVKLDP-----DAQVLPSAGSKEAIFHFPLV 79 (350)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCC-----CCcEEEcCChHHHHHHHHHH
Confidence 345688899999998888865331 1 357888988887665543
No 225
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=39.17 E-value=1e+02 Score=26.70 Aligned_cols=43 Identities=7% Similarity=0.055 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 129 PVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 129 p~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
+-...+-.++-+.+++++|.+++. -.=++|+|||+++..++..
T Consensus 31 ~~~~~~~~~~r~~la~l~~~~~~~-----~~i~~t~~~t~al~~~~~~ 73 (363)
T TIGR02326 31 SDYNIVVEQIRQQLLALATAEEGY-----TSVLLQGSGTFAVEAVIGS 73 (363)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCc-----eEEEEcCCCHHHHHHHHHh
Confidence 334444556778999999997531 1356889999888877644
No 226
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=37.62 E-value=2.7e+02 Score=24.12 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=35.7
Q ss_pred hHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCC-CCCcCCCCCCceecCCchHHHHHHH
Q 036996 109 FLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLP-SSFLFSGTGGGVLHGSTCESLVCTL 174 (214)
Q Consensus 109 ~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p-~~~~~~~~~~G~~tsGGt~aNl~Al 174 (214)
.+.+.+....+.+ .|....+..++.+.+.+|+.+..|.+ -+. ..=++|+|++++....+
T Consensus 44 ~~~~~~~~~~~~~--~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-----~~I~it~G~~~~i~~~~ 103 (364)
T PRK07865 44 VIQEALAAAADAP--GYPTTAGTPELREAIVGWLARRRGVTGLDP-----AAVLPVIGSKELVAWLP 103 (364)
T ss_pred HHHHHHHHHHhhC--CCCCccCCHHHHHHHHHHHHHHcCCCCCCc-----ccEEEccChHHHHHHHH
Confidence 3444444433322 23333445678889999999988764 221 25678888888776543
No 227
>PLN00061 photosystem II protein Psb27; Provisional
Probab=37.24 E-value=2e+02 Score=22.49 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 036996 19 ADLEPKSFSDESKAVIDFIADYYKNIEKYPV 49 (214)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~pv 49 (214)
.+.|.+.|++......+.|.+|+.+.+..|.
T Consensus 74 ~p~D~~~~~~aa~~Ake~IndYisryR~~~~ 104 (150)
T PLN00061 74 DPKDEAKFRRTADAAKESIREYLGNWRGQKT 104 (150)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4678888999999999999999999977653
No 228
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=36.48 E-value=1.4e+02 Score=26.49 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
..+.+.+.+++..-.|.+-.. ..-++|+|||+++..++.+-
T Consensus 76 ~~lr~~ia~~l~~~~~~~~~~-----~~ii~t~G~t~al~~~~~~l 116 (403)
T TIGR01265 76 LAAREAVAEYLSSDLPGKLTA-----DDVVLTSGCSQAIEICIEAL 116 (403)
T ss_pred HHHHHHHHHHHHhhcCCCCCH-----HHEEEecChHHHHHHHHHHh
Confidence 345555555555444432111 13567888888777766654
No 229
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=35.57 E-value=1.3e+02 Score=26.70 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=35.2
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFAL 207 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~Si 207 (214)
.|...++| +++++.+|.+ .-++|+|||.+...++.+.. . + +.=.|+++.-+|.+.
T Consensus 30 g~~~~~~e----~~la~~~g~~---------~~v~~~sgt~aL~~~l~al~---~---~------pGd~Viv~~~t~~~~ 84 (376)
T TIGR02379 30 GPFSRRCE----TWLENRTGTK---------KALLTPSCTAALEMAALLLD---I---Q------PGDEVIMPSYTFVST 84 (376)
T ss_pred cHHHHHHH----HHHHHHhCCC---------eEEEeCCHHHHHHHHHHHcC---C---C------CcCEEEECCCCcHHH
Confidence 45455555 4566666553 36899999998766655430 0 1 111344677777777
Q ss_pred HHHhh
Q 036996 208 QKSAK 212 (214)
Q Consensus 208 ~KAa~ 212 (214)
..++.
T Consensus 85 ~~~~~ 89 (376)
T TIGR02379 85 ANAFV 89 (376)
T ss_pred HHHHH
Confidence 66653
No 230
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=35.49 E-value=1.5e+02 Score=26.23 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=35.0
Q ss_pred hHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCC-CCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 109 FLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLP-SSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 109 ~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p-~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
.+.+.+...++. ...|....+..++-+.+.+|+.+..|++ -+. .-.=++|+|++++....+.+
T Consensus 46 ~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~----~~~i~it~G~~~al~~~~~~ 109 (396)
T PRK09147 46 FIKDALAANLDG-LASYPTTAGLPALREAIAAWLERRYGLPALDP----ATQVLPVNGSREALFAFAQT 109 (396)
T ss_pred HHHHHHHHHhhh-hcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCc----cceEEECCChHHHHHHHHHH
Confidence 344444444432 2223333344567778888998888865 111 00245688888877665554
No 231
>PRK06246 fumarate hydratase; Provisional
Probab=35.00 E-value=2.6e+02 Score=24.18 Aligned_cols=72 Identities=14% Similarity=0.033 Sum_probs=50.2
Q ss_pred CHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHH
Q 036996 72 SLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKM 145 (214)
Q Consensus 72 ~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l 145 (214)
+.+.|.+.+.+.+...-.++--|...|--.++... .++.+.-.++=...+....-|-..++|+++++-+-++
T Consensus 163 g~e~i~~fvle~v~~aG~~~CPP~~vGVGIGGt~d--~a~~laK~Allr~i~~~n~~~~~a~lE~eLl~~iN~l 234 (280)
T PRK06246 163 GLEGIKKFVLETVKEAGGNPCPPIIVGVGIGGTFD--KAAKLAKKALLRPIGERNPDPEIAALEEELLEEINKL 234 (280)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCHH--HHHHHHHHHhcCcccCCCCChHHHHHHHHHHHHHHhc
Confidence 46888898888888887788889999998887533 3333433333222223344677889999999988775
No 232
>TIGR01827 gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C, putative. This model represents a family small family related to GatC, the third subunit of an enzyme for completing the charging of tRNA(Gln) by amidating the Glu-tRNA(Gln). The few known archaea that contain a member of this family appear to produce Asn-tRNA(Asn) by an analogous amidotransferase reaction. This protein is proposed to substitute for GatC in the charging of both tRNAs.
Probab=34.20 E-value=1.5e+02 Score=20.23 Aligned_cols=50 Identities=6% Similarity=0.141 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCC--HHHHHH
Q 036996 27 SDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPES--LDDILK 78 (214)
Q Consensus 27 ~~~~~~~~~~i~~~~~~~~~~pv~~~~~~~~l~~~~~~~lP~~g~~--~~~il~ 78 (214)
.+.++.++..+.+-++++. -|-|...+.+....+....|..+.+ .+++|+
T Consensus 3 ~~~~~~~~~~~~e~L~evd--~VeP~~~~~~~~n~lReD~~~~s~~~~re~iL~ 54 (73)
T TIGR01827 3 LKEAEEILEEFSERLEDVD--EEEETYYISDGSNKFREDEEPRCDPEFKKKMLE 54 (73)
T ss_pred HHHHHHHHHHHHHHHHccC--CCCCcccccccccCCCCCcCCCCcchhHHHHHH
Confidence 4567788888888888877 3333334444445555566655544 445544
No 233
>PRK09148 aminotransferase; Validated
Probab=33.51 E-value=2.3e+02 Score=25.18 Aligned_cols=43 Identities=9% Similarity=-0.040 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 130 VATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 130 ~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
+..++...+.+|+.+.+|.+-+. ...=++|+|++++....+.+
T Consensus 69 G~~~lr~aia~~~~~~~g~~~~~----~~~I~it~G~~~al~~~~~~ 111 (405)
T PRK09148 69 GIPGLRRAQAAYYARRFGVKLNP----DTQVVATLGSKEGFANMAQA 111 (405)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCC----CCcEEEcCChHHHHHHHHHH
Confidence 45678888889998877764221 00357899998887666543
No 234
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=33.34 E-value=2.8e+02 Score=24.33 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCchH
Q 036996 127 ASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFA 206 (214)
Q Consensus 127 ~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~S 206 (214)
.+|...++|+.+.+|+ |.+ ..+++++||.++..++.+.. .+ .| + .|+++..+|.+
T Consensus 27 ~g~~~~~le~~la~~~----g~~---------~~v~~~sgt~al~~~l~al~---~~-~G-------d-~Viv~~~~~~~ 81 (380)
T TIGR03588 27 QGPTVPAFEEALAEYV----GAK---------YAVAFNSATSALHIACLALG---VG-PG-------D-RVWTTPITFVA 81 (380)
T ss_pred CChhHHHHHHHHHHHH----CCC---------eEEEEcCHHHHHHHHHHHcC---CC-CC-------C-EEEeCCcchHH
Confidence 4566677777765554 443 24677788888777765541 10 01 1 24456666666
Q ss_pred HHHHh
Q 036996 207 LQKSA 211 (214)
Q Consensus 207 i~KAa 211 (214)
..+++
T Consensus 82 ~~~~~ 86 (380)
T TIGR03588 82 TANCA 86 (380)
T ss_pred HHHHH
Confidence 65554
No 235
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=32.78 E-value=1.7e+02 Score=27.03 Aligned_cols=20 Identities=5% Similarity=0.121 Sum_probs=17.0
Q ss_pred eec-CCchHHHHHHHHHHHHH
Q 036996 161 VLH-GSTCESLVCTLAAARDK 180 (214)
Q Consensus 161 ~~t-sGGt~aNl~Al~aAR~~ 180 (214)
+|+ ++||+||-.|+++||.+
T Consensus 130 ~f~~~SGSEAve~AlklAr~~ 150 (464)
T PRK06938 130 QFCGPTGTDAVEAALKLVKTA 150 (464)
T ss_pred EEeCCCcHHHHHHHHHHHHHh
Confidence 354 68899999999999976
No 236
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=32.44 E-value=76 Score=20.73 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=27.5
Q ss_pred HHHHhhcccC-cccccCChhHHHHHHHHHHHHHHHcCCCCC
Q 036996 112 EMLCSGFNVV-GFNWLASPVATELESIVMDWMGKMLKLPSS 151 (214)
Q Consensus 112 d~l~~~~n~n-~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~ 151 (214)
+.+..+.+.. .-.....|..+..|+.+|..+|+-+|+...
T Consensus 6 ~~i~~F~~s~~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 6 QIIQNYAHSDDIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHcCCccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 4445555443 223344555899999999999999999653
No 237
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=32.44 E-value=2.5e+02 Score=25.45 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=41.1
Q ss_pred cCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCch
Q 036996 126 LASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHF 205 (214)
Q Consensus 126 ~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~ 205 (214)
..++...++|+++ ++.+|.+. .++-+.|-.||+-.+-+=.. ++-+|+.=+..|.
T Consensus 81 G~~~~h~~LE~~l----A~f~g~e~---------al~f~SGy~AN~~~i~~l~~-------------~~dli~~D~lnHA 134 (388)
T COG0156 81 GTSDLHVELEEEL----ADFLGAEA---------ALLFSSGFVANLGLLSALLK-------------KGDLIFSDELNHA 134 (388)
T ss_pred CCcHHHHHHHHHH----HHHhCCCc---------EEEEcccchhHHHHHHHhcC-------------CCcEEEEechhhh
Confidence 4456677888875 55556664 35555567788766543211 2446677789999
Q ss_pred HHHHHhhc
Q 036996 206 ALQKSAKL 213 (214)
Q Consensus 206 Si~KAa~l 213 (214)
|+..++++
T Consensus 135 SiidG~rl 142 (388)
T COG0156 135 SIIDGIRL 142 (388)
T ss_pred hHHHHHHh
Confidence 99999875
No 238
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=32.28 E-value=1.6e+02 Score=23.22 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=17.9
Q ss_pred HhhcCCCCCCCCCCCHHHHHHHHhH
Q 036996 58 LSARLPDTAPHSPESLDDILKDVTD 82 (214)
Q Consensus 58 l~~~~~~~lP~~g~~~~~il~~l~~ 82 (214)
+...-+..+|+.|.+.+++|+-+.+
T Consensus 90 ISgC~~a~LPedp~D~~~~l~vlv~ 114 (172)
T COG2406 90 ISGCKPAYLPEDPYDIDEILAVLVK 114 (172)
T ss_pred hcCCCCCCCCCCccCHHHHHHHHHH
Confidence 3344456899999999988876553
No 239
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=32.25 E-value=2.6e+02 Score=24.44 Aligned_cols=41 Identities=10% Similarity=0.013 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCcCCCCCC-ceecCCchHHHHHHHH
Q 036996 130 VATELESIVMDWMGKMLKLPSSFLFSGTGG-GVLHGSTCESLVCTLA 175 (214)
Q Consensus 130 ~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~-G~~tsGGt~aNl~Al~ 175 (214)
+..++-+.+.+|+.+..|.+-+. .. =++|+|++++....+.
T Consensus 68 G~~~lr~~ia~~~~~~~~~~~~~-----~~~vi~t~G~~~~l~~~~~ 109 (383)
T TIGR03540 68 GMLAYRQAVADWYKRRFGVELDP-----ETEVLSLIGSKEGIAHIPL 109 (383)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCC-----CCeEEECCCcHHHHHHHHH
Confidence 34567788888888887775321 12 3467888877666544
No 240
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=31.78 E-value=1.1e+02 Score=27.92 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=31.4
Q ss_pred cCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceec--CCchHHHHHHHHH
Q 036996 126 LASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLH--GSTCESLVCTLAA 176 (214)
Q Consensus 126 ~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~t--sGGt~aNl~Al~a 176 (214)
..+-...++|+..++-+.+|||..++. |++-+ .+||.||+..+.+
T Consensus 59 ~G~~~id~iE~la~~ra~~lF~~~~~~------w~anvqp~SGs~An~av~~a 105 (399)
T PF00464_consen 59 GGCEYIDEIEELAIERAKELFGAEPKE------WYANVQPHSGSQANLAVYMA 105 (399)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHT-STTT------EEEE---SSHHHHHHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHhCCCccc------ceEEeecCCchHHHHHHHHH
Confidence 345567899999999999999998543 44433 6677888766544
No 241
>PRK06348 aspartate aminotransferase; Provisional
Probab=31.69 E-value=2.3e+02 Score=24.88 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=32.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 125 ~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
|....+...+.+.+.+|+.+..|++-+. ..=++|+|+++++..++.+.
T Consensus 62 Y~~~~G~~~lr~~ia~~~~~~~~~~~~~-----~~i~it~G~~~al~~~~~~~ 109 (384)
T PRK06348 62 YTDSGGDVELIEEIIKYYSKNYDLSFKR-----NEIMATVGACHGMYLALQSI 109 (384)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCh-----hhEEEcCChHHHHHHHHHHh
Confidence 3333344578889999998877764332 24678999998887666654
No 242
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=31.61 E-value=39 Score=22.18 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCC
Q 036996 128 SPVATELESIVMDWMGKMLKLPSS 151 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~ 151 (214)
.|..+.-|+.+|.-+|.-+|+...
T Consensus 23 p~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 23 PSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceE
Confidence 556788999999999999999865
No 243
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=31.25 E-value=2.3e+02 Score=24.91 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=28.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCC-CceecCCchHHHHHHHHH
Q 036996 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTG-GGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 125 ~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~-~G~~tsGGt~aNl~Al~a 176 (214)
|...++...+-+.+.+|+.+..|.+-+. . .=++|+|++++....+.+
T Consensus 64 Y~~~~G~~~lr~aia~~~~~~~g~~~~~-----~~~I~it~Gs~~al~~~~~~ 111 (388)
T PRK07366 64 YLLFHGTLDFREAAAQWYEQRFGLAVDP-----ETEVLPLIGSQEGTAHLPLA 111 (388)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcCCC-----cCeEEECCCcHHHHHHHHHH
Confidence 3333445567778888888877764321 1 235578888877665543
No 244
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=30.93 E-value=1.7e+02 Score=26.51 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=38.2
Q ss_pred hhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 106 TAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 106 ~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
..+-.-+.+...+...-.. .+|-..+.|+ ++++.+|-+. .+.++.||.|+..||++-
T Consensus 13 i~~~e~~~v~~vl~sg~i~--~G~~v~~FE~----~~ae~~G~k~---------ava~~sgT~AL~laL~al 69 (374)
T COG0399 13 IGEEELAAVQEVLKSGWLT--GGPFVRRFEQ----AFAEYLGVKY---------AVAVSSGTAALHLALLAL 69 (374)
T ss_pred cchHHHHHHHHHHHcCCee--cChHHHHHHH----HHHHHhCCCe---------EEEecChHHHHHHHHHhc
Confidence 3344445566666554332 3788888888 5677777654 578888899999988743
No 245
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=30.46 E-value=1.9e+02 Score=26.88 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=21.3
Q ss_pred CceecCCchHHHHHHHHHHHHHHH
Q 036996 159 GGVLHGSTCESLVCTLAAARDKAL 182 (214)
Q Consensus 159 ~G~~tsGGt~aNl~Al~aAR~~~~ 182 (214)
--+|+++||+||=.|+++||.+..
T Consensus 119 ~~~f~~sGaeA~E~AiKiAr~~Tg 142 (447)
T COG0160 119 KVFFGNSGAEAVEAAIKIARAYTG 142 (447)
T ss_pred eEEecCCcHHHHHHHHHHHHHHhC
Confidence 467999999999999999999863
No 246
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=30.20 E-value=43 Score=30.75 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=48.9
Q ss_pred hhhhHHHHHHhhcccCcccccCChhHHHHHHHH----HHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHH
Q 036996 106 TAGFLGEMLCSGFNVVGFNWLASPVATELESIV----MDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDK 180 (214)
Q Consensus 106 ~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~v----i~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~ 180 (214)
..+.+.-++++.+|+-+..-...|...++.... .-|.+-.+|-+= ||-+|.=|+.||+..+-++|++
T Consensus 323 ~~~~~s~~lSsv~~NvP~vl~~~~~i~~~~~~~~~~~~lw~A~a~Ga~l--------GgnlT~IGs~Anlv~~~i~~~~ 393 (424)
T COG1055 323 GIGWLSGLLSSVLDNVPTVLTFAPIIKGLAANGMGKEPLWLALALGADL--------GGNLTPIGSAANLVWLGVLERK 393 (424)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHhhcccccchHHHHHHHHHhCcc--------ccchhhhhhHHHHHHHHHHHHC
Confidence 345566677777887766555556554444432 468888887653 8999999999999999999887
No 247
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=29.67 E-value=2.3e+02 Score=24.91 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=27.5
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 127 ASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 127 ~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
..|...++|+.+.+ +.|.+ ..+++++|+.||..++.+.
T Consensus 38 ~~p~~~~le~~la~----l~g~~---------~a~~~~sG~~Ai~~~l~~l 75 (369)
T cd00614 38 GNPTVDALEKKLAA----LEGGE---------AALAFSSGMAAISTVLLAL 75 (369)
T ss_pred CChhHHHHHHHHHH----HHCCC---------CEEEEcCHHHHHHHHHHHH
Confidence 45777888876554 55543 3688899999999888765
No 248
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=28.95 E-value=2.5e+02 Score=24.81 Aligned_cols=41 Identities=7% Similarity=0.075 Sum_probs=25.3
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHH
Q 036996 127 ASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCT 173 (214)
Q Consensus 127 ~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~A 173 (214)
.++-+.++=+++.+-+++++|-|++. .=++++|++.+-+.|
T Consensus 42 r~~~f~~~~~~~~~~l~~l~~~~~~~------~v~~~~gsgt~~~Ea 82 (360)
T PRK05355 42 RSKEFEAVAEEAEADLRELLNIPDNY------KVLFLQGGASLQFAM 82 (360)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCc------EEEEEcCCchHHHHH
Confidence 34445577778888888899876542 335555554454444
No 249
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=28.65 E-value=3.4e+02 Score=23.39 Aligned_cols=74 Identities=9% Similarity=0.027 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHH
Q 036996 70 PESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKM 145 (214)
Q Consensus 70 g~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l 145 (214)
..+.+.|.+.+.+.+...-.++--|...|--.++... .++.+...++=...+....-|-..+||+++++.+-++
T Consensus 154 ~~g~egi~~fVle~V~~aG~~~CPP~~vGVGIGGt~d--~aa~LaK~Allr~ig~~n~d~~~a~lE~elle~iN~l 227 (273)
T TIGR00722 154 SDGIEGVKKFVLETVKNAGGKPCPPIIVGVGIGGSFE--TAAKLAKKALLRPIGERHPNPKIAKLELELLEEINSL 227 (273)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCHH--HHHHHHHHHhhhhhccCCCChhHHHHHHHHHHHHHhc
Confidence 3457888888888888777788889999988887332 2223332222222333445677899999999988775
No 250
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=28.49 E-value=67 Score=22.07 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHcCCCCCC
Q 036996 133 ELESIVMDWMGKMLKLPSSF 152 (214)
Q Consensus 133 ~iE~~vi~wl~~l~G~p~~~ 152 (214)
+.=++++++|++.||.|.+.
T Consensus 40 kAN~ali~~La~~l~v~ks~ 59 (77)
T PF02594_consen 40 KANKALIRFLAKALGVPKSD 59 (77)
T ss_dssp CHHHHHHHHHHHHCT--TTC
T ss_pred hhHHHHHHHHHHHhCCCccc
Confidence 45568999999999999863
No 251
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=28.39 E-value=2.5e+02 Score=24.74 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcCCCCC-CceecCCchHHHHHHHHH
Q 036996 131 ATELESIVMDWMGKMLKLPSSFLFSGTG-GGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 131 ~~~iE~~vi~wl~~l~G~p~~~~~~~~~-~G~~tsGGt~aNl~Al~a 176 (214)
..++-+.+.+|+.+..|++.+.. .. .=++|+|++++....+.+
T Consensus 66 ~~~lr~aia~~~~~~~~~~~~~~---~~~~i~it~Ga~~al~~~~~~ 109 (393)
T TIGR03538 66 LPELRQAIARWLERRFDLPTGVD---PERHVLPVNGTREALFAFAQA 109 (393)
T ss_pred CHHHHHHHHHHHHHhhCCcccCC---CCceEEECCCcHHHHHHHHHH
Confidence 45677788888888877763110 01 235688888877766554
No 252
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=28.14 E-value=74 Score=25.45 Aligned_cols=25 Identities=8% Similarity=0.140 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCE 168 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~ 168 (214)
.++++++..|+.+. . +.++|+|||-
T Consensus 54 ~~I~~~l~~~~~~~------~------DvvlttGGTG 78 (169)
T COG0521 54 EQIRATLIALIDED------V------DVVLTTGGTG 78 (169)
T ss_pred HHHHHHHHHHhcCC------C------CEEEEcCCcc
Confidence 45777777776553 1 6789999984
No 253
>PF06956 RtcR: Regulator of RNA terminal phosphate cyclase; InterPro: IPR009715 RtcR is a sigma54-dependent enhancer binding protein [] that activates transcription of the rtcBA operon. The product of the rtcA gene is an RNA 3 -terminal phosphate cyclase []. This domain is found at the N terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain IPR002078 from INTERPRO in the central region of the protein sequence.
Probab=28.08 E-value=1.5e+02 Score=23.97 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHHhh
Q 036996 68 HSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSG 117 (214)
Q Consensus 68 ~~g~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~ 117 (214)
..|.+++||...+.+....+...+....|+=|+.++...+-++=-+|+.+
T Consensus 79 ~dPWDfeeVY~~l~dfa~~Y~Fd~e~E~YlvHITTGTHVaQIc~FLL~Es 128 (183)
T PF06956_consen 79 ADPWDFEEVYAALHDFARGYPFDPENEDYLVHITTGTHVAQICWFLLTES 128 (183)
T ss_pred CCCccHHHHHHHHHHHHhhCCCCCCCCceEEEecCCcHHHHHHHHHHHHh
Confidence 45788999999999988888888889999999999877777766666655
No 254
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=27.92 E-value=2.3e+02 Score=25.33 Aligned_cols=43 Identities=9% Similarity=-0.045 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 129 PVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 129 p~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
.+...+-+.+.+|+.+..|++-+. ..=++|+|++++...++.+
T Consensus 74 ~G~~~lr~aia~~~~~~~g~~~~~-----~~I~it~G~~~al~~~~~~ 116 (409)
T PLN00143 74 GGILPARRAIADYLSNDLPYQLSP-----DDVYLTLGCKHAAEIIIKV 116 (409)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCH-----hhEEEecChHHHHHHHHHH
Confidence 344556677788887776654321 1456788888877766553
No 255
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=27.42 E-value=91 Score=20.24 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=26.2
Q ss_pred HHHhhcccCc-ccccCChhHHHHHHHHHHHHHHHcCCCCC
Q 036996 113 MLCSGFNVVG-FNWLASPVATELESIVMDWMGKMLKLPSS 151 (214)
Q Consensus 113 ~l~~~~n~n~-~~~~~sp~~~~iE~~vi~wl~~l~G~p~~ 151 (214)
.+..+.+... -...-.|..+..|+.+|.-+|+-+|+...
T Consensus 7 ~i~~F~~~~~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 7 MVKAFMKDPKATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred HHHHHHcCCCcCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 3444444332 22344454889999999999999999653
No 256
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=27.12 E-value=2e+02 Score=25.72 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=37.0
Q ss_pred cCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEeCCCch
Q 036996 126 LASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHF 205 (214)
Q Consensus 126 ~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aAR~~~~~~~~~g~~~~~~~~i~~s~~aH~ 205 (214)
...|...++|+.+ ++++|.+ ..+++++|+.++..++.+. ++ .| + .|+++...|.
T Consensus 50 ~~np~~~~lE~~l----A~l~g~~---------~~l~~~sG~~Ai~~~l~~l----l~-~G-------D-~Vlv~~~~y~ 103 (385)
T PRK08574 50 EENPTLRPLEEAL----AKLEGGV---------DALAFNSGMAAISTLFFSL----LK-AG-------D-RVVLPMEAYG 103 (385)
T ss_pred CCCccHHHHHHHH----HHHhCCC---------cEEEeCCHHHHHHHHHHHH----hC-CC-------C-EEEEcCCCch
Confidence 4456677777764 5556643 3588899999988877643 21 11 2 3446677777
Q ss_pred HHHHHh
Q 036996 206 ALQKSA 211 (214)
Q Consensus 206 Si~KAa 211 (214)
+..+.+
T Consensus 104 ~~~~~~ 109 (385)
T PRK08574 104 TTLRLL 109 (385)
T ss_pred hHHHHH
Confidence 765544
No 257
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=27.01 E-value=1.3e+02 Score=23.32 Aligned_cols=42 Identities=7% Similarity=-0.036 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHcCC--CCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 130 VATELESIVMDWMGKMLKL--PSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 130 ~~~~iE~~vi~wl~~l~G~--p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
+..++=+.+.+|+.+.+|. +-+. ..=++|+|++.++...+.+
T Consensus 93 G~~~lR~AiA~~l~~~~g~~v~~~p-----d~Ivvt~Ga~~al~~l~~~ 136 (153)
T PLN02994 93 GLANFRKAIANFMAEARGGRVKFDA-----DMIVLSAGATAANEIIMFC 136 (153)
T ss_pred CcHHHHHHHHHHHHHHhCCCCccch-----hheEEcCCHHHHHHHHHHH
Confidence 4456778889999999883 2111 1467888888877665544
No 258
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=26.20 E-value=3e+02 Score=24.38 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHH
Q 036996 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTL 174 (214)
Q Consensus 132 ~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al 174 (214)
..+-+.+.+|+.+..|.+-+. ..=++|+|++++....+
T Consensus 77 ~~LR~aia~~~~~~~g~~v~~-----~~I~it~Ga~~al~~~~ 114 (416)
T PRK09440 77 DELIEALAALLNERYGWNISP-----QNIALTNGSQSAFFYLF 114 (416)
T ss_pred HHHHHHHHHHHHHHhCCCCCh-----hhEEEccChHHHHHHHH
Confidence 455566667776665543211 13456666666554443
No 259
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=25.94 E-value=1.7e+02 Score=25.40 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 130 VATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 130 ~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
...++.+.+.+|+.+. +.+++ .=++|+|+++++..++.+-
T Consensus 57 ~~~~Lr~aia~~~~~~-~~~~~-------~i~it~Ga~~~i~~~~~~~ 96 (335)
T PRK14808 57 PDEELIEKILSYLDTD-FLSKN-------NVSVGNGADEIIYVMMLMF 96 (335)
T ss_pred ChHHHHHHHHHHhCCC-CCCcc-------eEEEcCCHHHHHHHHHHHh
Confidence 3455666666666553 25544 4578889888887776543
No 260
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=25.26 E-value=3.9e+02 Score=23.48 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=30.5
Q ss_pred cCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceec-CCchHHHHHHHH
Q 036996 126 LASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLH-GSTCESLVCTLA 175 (214)
Q Consensus 126 ~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~t-sGGt~aNl~Al~ 175 (214)
..+|-+.++=.++-+-+++++|.|++. .=+|+ ++||.++-.++.
T Consensus 34 hr~~~f~~~~~~~r~~l~~l~~~~~~~------~v~f~~gs~T~a~~~~~~ 78 (361)
T TIGR01366 34 HRQAPVKNLVGRVREGLAELFSLPDGY------EVILGNGGATAFWDAATF 78 (361)
T ss_pred cCChHHHHHHHHHHHHHHHHhCCCCCc------eEEEECCchhHHHHHHHH
Confidence 456667777778889999999987542 34565 558877665553
No 261
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=25.21 E-value=2.8e+02 Score=25.88 Aligned_cols=58 Identities=9% Similarity=0.185 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHhHhhc
Q 036996 27 SDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCIL 85 (214)
Q Consensus 27 ~~~~~~~~~~i~~~~~~~~~~pv~~~~~~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~ 85 (214)
++...++++.+.|.++......- .+.+.+++-..-....|++|.+.+|+++.+...+.
T Consensus 180 ~~~~~eml~dlndll~kh~~g~d-t~~df~~fm~khge~fpe~pr~~~el~d~laAR~a 237 (652)
T COG4867 180 RRRVTEMLDDLNDLLDKHARGED-TQRDFDEFMTKHGEFFPENPRNVEELLDSLAARAA 237 (652)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC-CcccHHHHHHhccccCCCCcccHHHHHHHHHHHHH
Confidence 45567788888888877654321 12344444444467899999999999888766543
No 262
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=24.85 E-value=2.3e+02 Score=25.24 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=39.5
Q ss_pred hhHHHHHHhh-cccCcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHH
Q 036996 108 GFLGEMLCSG-FNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCT 173 (214)
Q Consensus 108 ~~~~d~l~~~-~n~n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~A 173 (214)
.+.++++++. +-.+...|+..-+-+.+=..+.+++.+-+||.-+. -.=.+|.|+--+-++.
T Consensus 52 ~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~-----~NIalTnGSQs~fFYl 113 (417)
T COG3977 52 DLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITA-----QNIALTNGSQSAFFYL 113 (417)
T ss_pred HHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCcc-----ceeeecCCccchHHHH
Confidence 4566666665 44445566666666667778899999999998654 1345666655444444
No 263
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=24.52 E-value=2.4e+02 Score=24.74 Aligned_cols=40 Identities=8% Similarity=0.148 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCC-chHHHHHH
Q 036996 128 SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGS-TCESLVCT 173 (214)
Q Consensus 128 sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsG-Gt~aNl~A 173 (214)
+|-+.++=+++.+.+.+++|.|++. .-+|++| ||+++=.+
T Consensus 32 ~~~f~~~~~~~~~~l~~l~~~~~~~------~v~~~~gsgT~a~ea~ 72 (349)
T TIGR01364 32 SKEFEAVANEAESDLRELLNIPDNY------EVLFLQGGATGQFAAV 72 (349)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCc------eEEEEcCCchHHHHHH
Confidence 4444566667777888888775432 3455555 66554333
No 264
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=24.44 E-value=2.4e+02 Score=28.22 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=47.9
Q ss_pred CCHHHHHHHHhHhhcCCCCcCCCCC--cceeccCCCChhh--hHHHHHHhhcc---cCcccccCChhHHHHHHHHHHHHH
Q 036996 71 ESLDDILKDVTDCILPGLTHWQSPN--FFGYFQANASTAG--FLGEMLCSGFN---VVGFNWLASPVATELESIVMDWMG 143 (214)
Q Consensus 71 ~~~~~il~~l~~~~~~~~~~~~~pr--~~g~~~~~~~~~~--~~~d~l~~~~n---~n~~~~~~sp~~~~iE~~vi~wl~ 143 (214)
.+-++.++.+.+.+...-.....|+ .-.|++.+|+-+| -++..|+..+. .++.-.++| ..||+..+ +
T Consensus 494 iGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMS---Ey~EkHsV---S 567 (786)
T COG0542 494 IGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMS---EYMEKHSV---S 567 (786)
T ss_pred eChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechH---HHHHHHHH---H
Confidence 3455666666665554444444443 1245567777666 67888888887 444444554 56888754 6
Q ss_pred HHcCCCCCC
Q 036996 144 KMLKLPSSF 152 (214)
Q Consensus 144 ~l~G~p~~~ 152 (214)
+|+|-|+++
T Consensus 568 rLIGaPPGY 576 (786)
T COG0542 568 RLIGAPPGY 576 (786)
T ss_pred HHhCCCCCC
Confidence 889999986
No 265
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=24.40 E-value=1.5e+02 Score=27.57 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCC---CCCCCCCh-hHHhhcCCCCCCCCCCCHHHHHHHH
Q 036996 34 IDFIADYYKNIEKY---PVQSKVEP-GYLSARLPDTAPHSPESLDDILKDV 80 (214)
Q Consensus 34 ~~~i~~~~~~~~~~---pv~~~~~~-~~l~~~~~~~lP~~g~~~~~il~~l 80 (214)
++.+.+|.+.+.+- .|-|-..| ++....+.+..|.++.+.+++++..
T Consensus 417 Ln~ILdyVEkLnEVDTegVEPM~hp~e~~~nvLREDeV~~sl~rEeaLsNA 467 (477)
T PRK12821 417 FKDITSSFKQVEKIDTTNVKPMYAPFSNSPTPLRKDKDVVQKHQKILLKNC 467 (477)
T ss_pred HHHHHHHHHHHcccCcCCCCCcccCcccccCCCCCCCCCCCCCHHHHHhcC
Confidence 34455666665542 23232233 2344566677777777777777643
No 266
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=23.97 E-value=3.6e+02 Score=23.76 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=27.6
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecC-CchHHHHHH
Q 036996 127 ASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHG-STCESLVCT 173 (214)
Q Consensus 127 ~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~ts-GGt~aNl~A 173 (214)
.++.+.++=.++-+-+++++|.|+.. .=+|++ +||+++=.+
T Consensus 42 r~~~f~~~~~~~r~~l~~l~~~~~~~------~v~~~~gs~T~~~~~~ 83 (378)
T PRK03080 42 RQKPVKALLKRVIEGTRELLSLPEGY------EVGIVPGSDTGAWEMA 83 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCc------eEEEECCchHHHHHHH
Confidence 34566777788889999999987542 345554 666654444
No 267
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=23.76 E-value=2e+02 Score=25.23 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=33.5
Q ss_pred HHHHhhcccCcccccC-ChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 112 EMLCSGFNVVGFNWLA-SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 112 d~l~~~~n~n~~~~~~-sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
+.+...++.. .+.. +|...++|+++-+|+ |-+ ..+.++.||.|+..||.+
T Consensus 9 ~~v~~~l~s~--~~~~~g~~~~~fE~~~a~~~----g~~---------~~~~~~sgt~Al~~al~~ 59 (363)
T PF01041_consen 9 DAVLEVLRSG--WLSTYGPYVEEFEKEFAEYF----GVK---------YAVAVSSGTSALHLALRA 59 (363)
T ss_dssp HHHHHHHHHT--CCSSSSHHHHHHHHHHHHHH----TSS---------EEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CccCCCHHHHHHHHHHHHHh----CCC---------eEEEeCChhHHHHHHHHh
Confidence 3444444443 2223 788889999765555 432 478899999999988877
No 268
>PRK15391 fumarate hydratase FumB; Provisional
Probab=23.30 E-value=4.1e+02 Score=25.39 Aligned_cols=79 Identities=10% Similarity=0.026 Sum_probs=52.0
Q ss_pred HHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhh---hHHHHHHhhcccCcc---cccCChhHHHHHHHHHHHHHHHc
Q 036996 73 LDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAG---FLGEMLCSGFNVVGF---NWLASPVATELESIVMDWMGKML 146 (214)
Q Consensus 73 ~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~---~~~d~l~~~~n~n~~---~~~~sp~~~~iE~~vi~wl~~l~ 146 (214)
+++|.+.+.+.+...-.++--|...|-..++...-+ .+-..++..+.+-.. .....|-..++|+++++.+-++
T Consensus 205 p~~i~~FV~e~V~~~G~~aCPP~~vGVGIGGt~~~a~~~laK~A~~~llr~l~~~~n~~g~~~r~a~LE~eLle~iN~l- 283 (548)
T PRK15391 205 PGKLKNFLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAHYYDELPTEGNEHGQAFRDVQLEQELLEEAQKL- 283 (548)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEEeCCCHHHHHHHHHHHHHHhhhcccCcccccCCCchHHHHHHHHHHHHHhhc-
Confidence 456888888888877778888999999999877644 233333344444321 1124455789999999887665
Q ss_pred CCCCCC
Q 036996 147 KLPSSF 152 (214)
Q Consensus 147 G~p~~~ 152 (214)
|+-+.+
T Consensus 284 GIGpq~ 289 (548)
T PRK15391 284 GLGAQF 289 (548)
T ss_pred CcCccc
Confidence 444334
No 269
>PLN02231 alanine transaminase
Probab=23.16 E-value=2.4e+02 Score=26.53 Aligned_cols=67 Identities=7% Similarity=-0.050 Sum_probs=43.2
Q ss_pred hhhhHHHHHHhhccc---CcccccCChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 106 TAGFLGEMLCSGFNV---VGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 106 ~~~~~~d~l~~~~n~---n~~~~~~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
+..++..+.....+. ....|..+.+..++=+.+.+|+.+..|++-+. ..=++|+|++++....+.+-
T Consensus 142 p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~p-----e~I~iT~Ga~~ai~~~~~~l 211 (534)
T PLN02231 142 SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADP-----NDIFLTDGASPAVHMMMQLL 211 (534)
T ss_pred CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCc-----ccEEEeCCHHHHHHHHHHHh
Confidence 334555544433221 22345555667788889999999887876432 25678999999888777654
No 270
>PF15509 DUF4650: Domain of unknown function (DUF4650)
Probab=23.00 E-value=5.6e+02 Score=24.20 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHHHHH---HHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHhHhhcCCCCcCC-CCCc
Q 036996 21 LEPKSFSDESKAVIDFIAD---YYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHWQ-SPNF 96 (214)
Q Consensus 21 ~~~~~~~~~~~~~~~~i~~---~~~~~~~~pv~~~~~~~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~-~pr~ 96 (214)
...++.+++=-+++..+.. -+..+..-|+.....-+.++......=|.++++++++|++|+..|--...... .+.-
T Consensus 308 s~e~q~hKLRLKLLKKLKAKKkKLAsL~s~~~~g~~~se~~e~~sq~gS~nd~eslqdlL~ELQ~qID~AD~kS~~t~~s 387 (520)
T PF15509_consen 308 SVEDQTHKLRLKLLKKLKAKKKKLASLMSSPQNGKPPSENLEHVSQCGSPNDCESLQDLLNELQYQIDIADNKSGCTTAS 387 (520)
T ss_pred cchhhHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCCccccccCCCCCCCCchHHHHHHHHHHHHhhhhcccCCCCccCC
Confidence 3445555554455554433 23333333332222223444555566677788899999999887643221110 0111
Q ss_pred ceeccCCCChhhhHHHHHHh
Q 036996 97 FGYFQANASTAGFLGEMLCS 116 (214)
Q Consensus 97 ~g~~~~~~~~~~~~~d~l~~ 116 (214)
-.-.++.++.-.|++++|.-
T Consensus 388 ~~s~~ss~shEEiLAELLSP 407 (520)
T PF15509_consen 388 DVSLYSSQSHEEILAELLSP 407 (520)
T ss_pred CccccCCCcHHHHHHHHcCC
Confidence 11235677888888888865
No 271
>PRK07681 aspartate aminotransferase; Provisional
Probab=22.87 E-value=5.3e+02 Score=22.71 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=38.0
Q ss_pred hhHHHHHHhhcccCccccc-CChhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHH
Q 036996 108 GFLGEMLCSGFNVVGFNWL-ASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAA 176 (214)
Q Consensus 108 ~~~~d~l~~~~n~n~~~~~-~sp~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~a 176 (214)
..+.+.+...++... .+. ..++...+-+.+.+|+.+..|.+-+. ...=++|+|++++....+.+
T Consensus 48 ~~~~~~~~~~~~~~~-~~~y~~~G~~~lr~aia~~~~~~~g~~~~~----~~~I~it~G~~~al~~~~~~ 112 (399)
T PRK07681 48 DFVREEMVHTANQKE-SYGYTLSGIQEFHEAVTEYYNNTHNVILNA----DKEVLLLMGSQDGLVHLPMV 112 (399)
T ss_pred HHHHHHHHHHHhccc-cCCCCCCCcHHHHHHHHHHHHHHhCCCCCC----CCeEEECCCcHHHHHHHHHH
Confidence 345566666654421 121 12455678888899999887764221 01356789988877665543
No 272
>PRK13456 DNA protection protein DPS; Provisional
Probab=22.69 E-value=3.7e+02 Score=21.86 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCCCCCCChhH---HhhcCCCCCCCCCCCHHHHHHHHhH
Q 036996 36 FIADYYKNIEKYPVQSKVEPGY---LSARLPDTAPHSPESLDDILKDVTD 82 (214)
Q Consensus 36 ~i~~~~~~~~~~pv~~~~~~~~---l~~~~~~~lP~~g~~~~~il~~l~~ 82 (214)
.+.+.+..+...|+ .+|.+ +...-...+|+.|.+..++|+...+
T Consensus 71 ~lAeRI~qLGG~P~---~~p~~~~~ls~~~~~~~p~d~tdv~~mL~~~L~ 117 (186)
T PRK13456 71 ALVPRIYELGGKLP---RDIREFHDISACPDAYLPENPTDPKEILKVLLE 117 (186)
T ss_pred HHHHHHHHhCCCCC---CChHHHhhhhcCccccCCCCcchHHHHHHHHHH
Confidence 34555555666553 35664 4444445678877778887776554
No 273
>COG4041 Predicted membrane protein [Function unknown]
Probab=22.66 E-value=1.8e+02 Score=22.47 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=48.2
Q ss_pred CCCCCC--CCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHH
Q 036996 65 TAPHSP--ESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWM 142 (214)
Q Consensus 65 ~lP~~g--~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl 142 (214)
-+||.| .+.+.|=+++++. --+.....|+|.+.++|+ +-++.+|++.-|--+...+.+-+ ..++-|+
T Consensus 31 glpekpgv~ga~~igr~ie~r----ggdlaggyfmgnivcspd--asagtllasig~yl~g~pegglv-----aallv~i 99 (171)
T COG4041 31 GLPEKPGVLGAKTIGRKIEDR----GGDLAGGYFMGNIVCSPD--ASAGTLLASIGNYLMGGPEGGLV-----AALLVWI 99 (171)
T ss_pred CCCCCCCccchHHHhhHHHHh----CCccccceeecceeeCCC--ccchhHHHHhhhheecCCcchHH-----HHHHHHH
Confidence 456665 3555565555552 234677899999988644 44677888777765555554433 3456688
Q ss_pred HHHcCCCCCC
Q 036996 143 GKMLKLPSSF 152 (214)
Q Consensus 143 ~~l~G~p~~~ 152 (214)
.+.+=-++++
T Consensus 100 gnrlcadpgy 109 (171)
T COG4041 100 GNRLCADPGY 109 (171)
T ss_pred ccccccCCCc
Confidence 7777666654
No 274
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=22.65 E-value=2.7e+02 Score=24.13 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 129 PVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 129 p~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
|....+-.++-+-+++++|.+++. ..=++|++||.++..++...
T Consensus 33 ~~~~~~~~~~~~~l~~l~~~~~~~-----~~i~~~~~gt~~l~~~~~~l 76 (368)
T PRK13479 33 DDFNALTASVRAKLVAIATGEEGY-----TCVPLQGSGTFSVEAAIGSL 76 (368)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCc-----eEEEEcCCcHHHHHHHHHhc
Confidence 444556778888999999986531 12457888888887776554
No 275
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=22.56 E-value=2e+02 Score=25.25 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHcC----CCCCCcCCCCCCceecCCchHHHHHHHH
Q 036996 129 PVATELESIVMDWMGKMLK----LPSSFLFSGTGGGVLHGSTCESLVCTLA 175 (214)
Q Consensus 129 p~~~~iE~~vi~wl~~l~G----~p~~~~~~~~~~G~~tsGGt~aNl~Al~ 175 (214)
++..++.+.+.+|+.+..| .+++ .=++|+|+++++..++.
T Consensus 66 ~G~~~Lr~aia~~~~~~~~~~~~v~~~-------~I~it~Ga~~al~~~~~ 109 (374)
T PRK02610 66 GGHEALKQAIAEYVNESAAGSSQITPA-------NISVGNGSDELIRSLLI 109 (374)
T ss_pred CchHHHHHHHHHHhCccccccCCCCHH-------HEEEcCChHHHHHHHHH
Confidence 4456677777788876643 3332 34677888777654443
No 276
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=22.51 E-value=5e+02 Score=22.32 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=15.6
Q ss_pred HHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHH
Q 036996 139 MDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTL 174 (214)
Q Consensus 139 i~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al 174 (214)
-+++++.+|.+.+. .=++|+|++++....+
T Consensus 69 r~~ia~~~~~~~~~------~I~~t~G~~~~i~~~~ 98 (356)
T PRK04870 69 KAALRAAMGVPAGA------DVLLGNGSDELIQLLA 98 (356)
T ss_pred HHHHHHHhCcCCCC------cEEEcCCHHHHHHHHH
Confidence 34455555665421 3456666666554443
No 277
>PRK06855 aminotransferase; Validated
Probab=22.35 E-value=2.7e+02 Score=25.07 Aligned_cols=40 Identities=5% Similarity=-0.058 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHH
Q 036996 130 VATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTL 174 (214)
Q Consensus 130 ~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al 174 (214)
+..++=+.+.+|+.+..|++-+. ..=++|+|++++...++
T Consensus 74 G~~~LReaia~~~~~~~g~~~~~-----~~I~it~G~~~al~~~~ 113 (433)
T PRK06855 74 GVLETREFLAELNNKRGGAQITP-----DDIIFFNGLGDAIAKIY 113 (433)
T ss_pred CCHHHHHHHHHHHHhccCCCCCH-----hHEEEcCcHHHHHHHHH
Confidence 34556667777877766654221 13467777777765554
No 278
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=22.14 E-value=5.4e+02 Score=22.55 Aligned_cols=73 Identities=18% Similarity=0.077 Sum_probs=47.6
Q ss_pred CCHHHHHHHHhHhhcCCCCcCCCCCcceeccCCCChhhhHHHHHHhhcccCcccccCChhHHHHHHHHHHHHHHH
Q 036996 71 ESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKM 145 (214)
Q Consensus 71 ~~~~~il~~l~~~~~~~~~~~~~pr~~g~~~~~~~~~~~~~d~l~~~~n~n~~~~~~sp~~~~iE~~vi~wl~~l 145 (214)
.+.+.|.+.+.+.+.....++--|-..|--.++....+. .+.-.++-...+....-|-..+||+++++-+-++
T Consensus 165 ~g~egi~~fVle~V~~aG~~~CPP~ivGVGIGGt~d~aa--~LaK~Allr~i~~~n~~p~~a~lE~eLle~iN~l 237 (299)
T PRK08230 165 EGYEGVVKFVFDVITSYGVNACPPLLVGVGIATSVETAA--VLSKKAILRPIGSRNPNPRAAELEKRLEEGLNRI 237 (299)
T ss_pred cchhHHHHHHHHHHHhhCCCCCCCceEEEEecCCHHHHH--HHHHHHhcccccCCCCChhHHHHHHHHHHHHhhc
Confidence 346778888888777777777888999988866443322 2322222222223344588899999999887665
No 279
>PRK06836 aspartate aminotransferase; Provisional
Probab=21.98 E-value=4.4e+02 Score=23.22 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHcCC--CCCCcCCCCCCceecCCchHHHHHHHH
Q 036996 130 VATELESIVMDWMGKMLKL--PSSFLFSGTGGGVLHGSTCESLVCTLA 175 (214)
Q Consensus 130 ~~~~iE~~vi~wl~~l~G~--p~~~~~~~~~~G~~tsGGt~aNl~Al~ 175 (214)
....+.+.+.+|+....+. +++ .=++|+|++++...++.
T Consensus 74 g~~~lr~~ia~~l~~~~~~~~~~~-------~i~~t~G~~~al~~~~~ 114 (394)
T PRK06836 74 GYPEVREAIAESLNRRFGTPLTAD-------HIVMTCGAAGALNVALK 114 (394)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCcC-------cEEEeCChHHHHHHHHH
Confidence 3345556666666655443 222 34577777766555443
No 280
>PLN03032 serine decarboxylase; Provisional
Probab=20.98 E-value=4.6e+02 Score=23.47 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhc----CCCCCCCCCChhHHhhcCCC-----CCC----CCCCCHHHHHHHHhHhhcCCCCcCC
Q 036996 26 FSDESKAVIDFIADYYKNI----EKYPVQSKVEPGYLSARLPD-----TAP----HSPESLDDILKDVTDCILPGLTHWQ 92 (214)
Q Consensus 26 ~~~~~~~~~~~i~~~~~~~----~~~pv~~~~~~~~l~~~~~~-----~lP----~~g~~~~~il~~l~~~~~~~~~~~~ 92 (214)
+.+...++++.+.+|+.+. -..|+....++..++..+.. --| .-|....++.+++.+.+.+- .+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~l-lg~~ 82 (374)
T PLN03032 4 RDAYMADILASYDKLLAEKSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARL-WELE 82 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHH-hCCC
Confidence 4455556666666666653 34576666666555543221 122 22334566666666655432 2333
Q ss_pred CCCcceeccCCCChhhhHHHHH
Q 036996 93 SPNFFGYFQANASTAGFLGEML 114 (214)
Q Consensus 93 ~pr~~g~~~~~~~~~~~~~d~l 114 (214)
...+.|++.++.+..-+.|=+.
T Consensus 83 ~~~~~G~fTsGGTEaNl~al~~ 104 (374)
T PLN03032 83 KDEYWGYITTCGTEGNLHGILV 104 (374)
T ss_pred CccCCEEEeCchHHHHHHHHHH
Confidence 3346799999888777665443
No 281
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=20.67 E-value=2.3e+02 Score=24.37 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHHHH
Q 036996 137 IVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAA 177 (214)
Q Consensus 137 ~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~aA 177 (214)
++-+.+++.++.+++ .-++|+|+++++..++.+.
T Consensus 64 ~lr~aia~~~~~~~~-------~I~it~G~~~al~~~~~~l 97 (353)
T PRK05387 64 ALRQAIAAYYGLDPE-------QVFVGNGSDEVLAHAFLAF 97 (353)
T ss_pred HHHHHHHHHhCCCHH-------HEEEcCCHHHHHHHHHHHh
Confidence 344455555566554 4678888888777665543
No 282
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=20.33 E-value=4.3e+02 Score=20.72 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhh-cCCCCCCCCCCCHHHHHHHHhHh
Q 036996 24 KSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSA-RLPDTAPHSPESLDDILKDVTDC 83 (214)
Q Consensus 24 ~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~~~~l~~-~~~~~lP~~g~~~~~il~~l~~~ 83 (214)
|++...+...+|.+.+.+..+...|+. ++.++.+ ..-.+.|.. .+..+.++.+.+.
T Consensus 54 ee~y~el~~~~DeiAERi~~LGg~p~~---t~~~~~~~s~ike~~~~-~~~~~~l~~l~~~ 110 (156)
T COG0783 54 EELYEELAEHVDEIAERIRALGGVPLG---TLSEYLKLSSIKEEPGD-YTAREMLKELVED 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcc---cHHHHHHhCCCcccCCC-CCHHHHHHHHHHH
Confidence 455666667777777777777765542 3344333 322344444 4566666666553
No 283
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=20.00 E-value=3.6e+02 Score=23.78 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCcCCCCCCceecCCchHHHHHHHH
Q 036996 130 VATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLA 175 (214)
Q Consensus 130 ~~~~iE~~vi~wl~~l~G~p~~~~~~~~~~G~~tsGGt~aNl~Al~ 175 (214)
...++.+.+.+|+.+ .|.+-+. ..=++|+|++++...++.
T Consensus 74 g~~~lr~aia~~~~~-~~~~~~~-----~~i~~t~G~~~al~~~~~ 113 (401)
T TIGR01264 74 GALSAREAIASYYHN-PDGPIEA-----DDVVLCSGCSHAIEMCIA 113 (401)
T ss_pred CCHHHHHHHHHHHhh-cCCCCCH-----HHEEECcChHHHHHHHHH
Confidence 344555666666654 2322110 134567777776665554
Done!