RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 036996
(214 letters)
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 237 bits (607), Expect = 1e-76
Identities = 84/202 (41%), Positives = 121/202 (59%), Gaps = 8/202 (3%)
Query: 21 LEPKSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDV 80
+ F K ++D++ADY + IE V V+PGYL +P TAP P++ +DIL+DV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 81 TDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMD 140
I+PG+THW SP FF YF +S L +MLC +GF+W ASP TELE+++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 141 WMGKMLKLPSSFLF--SGTGGGVLHGSTCESLVCTLAAARDKALEKLGG------GFDNI 192
W+GKML+LP +FL +G GGGV+ GS E+ + L AAR K + +L +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 193 TKLAVYASDQTHFALQKSAKLI 214
KL YASDQ H +++++ +
Sbjct: 181 EKLVAYASDQAHSSVERAGLIG 202
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 236 bits (605), Expect = 1e-76
Identities = 80/202 (39%), Positives = 118/202 (58%), Gaps = 8/202 (3%)
Query: 21 LEPKSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDV 80
+E F D +K ++DFIA+Y +NI + V +V+PGYL +PD AP PE D+++D+
Sbjct: 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60
Query: 81 TDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMD 140
I+PG+THW SP F YF S + +ML +GF W+ASP TELE ++MD
Sbjct: 61 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMD 120
Query: 141 WMGKMLKLPSSFLFS--GTGGGVLHGSTCESLVCTLAAARDKALEKLGG------GFDNI 192
W+GKML+LP+ FL G GGGV+ G+ ES + L A+ K L+++ +
Sbjct: 121 WLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTIL 180
Query: 193 TKLAVYASDQTHFALQKSAKLI 214
KL Y SDQ H +++++ L
Sbjct: 181 GKLVGYCSDQAHSSVERAGLLG 202
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 237 bits (606), Expect = 1e-76
Identities = 77/204 (37%), Positives = 112/204 (54%), Gaps = 9/204 (4%)
Query: 20 DLEPKSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKD 79
+EP+ + + + ++D+I Y + + V V+PGYL A+LP++AP P+S D I D
Sbjct: 5 SMEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGD 64
Query: 80 VTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVM 139
+ I+PG+ HWQSP+ Y+ A S LG+ML N +GF W +SP TELE VM
Sbjct: 65 IERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVM 124
Query: 140 DWMGKMLKLPSSFLF---SGTGGGVLHGSTCESLVCTLAAARDKALEKLG------GGFD 190
DW+ KML LP FL S GGGVL + ES + L AAR + ++
Sbjct: 125 DWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESS 184
Query: 191 NITKLAVYASDQTHFALQKSAKLI 214
+L YASDQ H +++K+ +
Sbjct: 185 LNARLVAYASDQAHSSVEKAGLIS 208
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 213 bits (545), Expect = 2e-67
Identities = 47/211 (22%), Positives = 81/211 (38%), Gaps = 12/211 (5%)
Query: 10 NITHGTSFSADLEPKSFSDESKAVIDFIADYYKNIEK--YPVQSKVEPGYLSARLPD--- 64
N+ A + V+D + +Y + V P L +
Sbjct: 5 NLFARDLLPAKNGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNL 64
Query: 65 TAPHSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFN 124
PESL+ IL D D + G+ P FF G GE L S N F
Sbjct: 65 ELSDHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFT 123
Query: 125 WLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEK 184
+ +PV +E I + M +++ S G G+ S + ++ AAR K +
Sbjct: 124 YEIAPVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPE 178
Query: 185 LGG-GFDNITKLAVYASDQTHFALQKSAKLI 214
+ G + KL ++ S+Q+H++++K+ +
Sbjct: 179 VKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL 209
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 210 bits (537), Expect = 3e-66
Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 16/205 (7%)
Query: 18 SADLEPKSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPD-TAPHSPESLDDI 76
+ +L F+ + ++ + S ++P L + + L +
Sbjct: 26 TGELGSAEFASVMSHTTSAMKSVFEQVNA--PYSGMDPKALEDAINAVDLDNKNAPLKSV 83
Query: 77 LKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELES 136
+ DV + + Q P+ + E + + N +W + AT +E
Sbjct: 84 IDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQ 143
Query: 137 IVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLG-------GGF 189
V++W+ L G+ +S L ARD +KL G
Sbjct: 144 KVVNWLCDKYDLSE------KADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLP 197
Query: 190 DNITKLAVYASDQTHFALQKSAKLI 214
D KL + S ++HF +QKSA +
Sbjct: 198 DYADKLRIVCSKKSHFTVQKSASWM 222
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 202 bits (517), Expect = 5e-63
Identities = 34/210 (16%), Positives = 68/210 (32%), Gaps = 10/210 (4%)
Query: 6 LSANNITHGTSFSADLEPKSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDT 65
++ + + V+D ++ + + EP L L
Sbjct: 23 MADSEALPSLAGDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEW-KEPEELKQLLDLE 81
Query: 66 APHSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNW 125
ES IL+ I + P FF + G ++ N + +
Sbjct: 82 LRSQGESQKQILERCRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRIITESLNTSQYTY 140
Query: 126 LASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKL 185
+PV +E V+ + ++ S G G+ S + + AR +
Sbjct: 141 EIAPVFVLMEEEVLRKLRALVGWSS-------GDGIFCPGGSISNMYAVNLARYQRYPDC 193
Query: 186 -GGGFDNITKLAVYASDQTHFALQKSAKLI 214
G + LA++ S + H+++QK A +
Sbjct: 194 KQRGLRTLPPLALFTSKECHYSIQKGAAFL 223
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 68.0 bits (166), Expect = 1e-13
Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 16/203 (7%)
Query: 13 HGTSFSADLEPKSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPES 72
+S E + + A D D+ ++ S+++P P +
Sbjct: 23 FPSSLQDYCEIRGIQSQPPARRDPTMDWLASLR-----SQIKPYRDRFPSHARLPRAGLP 77
Query: 73 LDDILKDVTDCILPGLTHWQSPNFFGY-FQANASTAGFLGEMLCSGFNVVGFNWLASPVA 131
+IL ++ W+ G + + FL E+ + P
Sbjct: 78 RAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPST 137
Query: 132 TELESIVMDWMGKMLKLPSSFLFSGTGGGVL-HGSTCESLVCTLAAARDKALEKLGGGFD 190
+ E+ V+ ML ++ GT G + G T ESL+ + RD A G
Sbjct: 138 AKFEAEVVAMTAHMLGGDAA---GGTVCGTVTSGGT-ESLLLAMKTYRDWARATKG---- 189
Query: 191 NITKLAVYASDQTHFALQKSAKL 213
IT H A K+A+
Sbjct: 190 -ITAPEAVVPVSAHAAFDKAAQY 211
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 59.5 bits (144), Expect = 1e-10
Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 15/178 (8%)
Query: 37 IADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHWQSPNF 96
+ ++IE ++S + +LP + + + L + D L T W+
Sbjct: 14 VTKVKQSIEDELIRSDSQLMNFP-QLPSNG-IPQDDVIEELNKLND--LIPHTQWKEGKV 69
Query: 97 FGYFQANASTAGFLGEMLCSGFNVV-GFNWLASPVATELESIVMDWMGKMLKLPSSFLFS 155
G L + + V + P ++ES V+ + +M PS
Sbjct: 70 SGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSD---- 125
Query: 156 GTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213
G G T ESL+ +A+ AL G IT+ + A H K+A
Sbjct: 126 TGCGTTTSGGT-ESLLLACLSAKMYALHHRG-----ITEPEIIAPVTAHAGFDKAAYY 177
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 57.4 bits (139), Expect = 4e-10
Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 10/147 (6%)
Query: 67 PHSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWL 126
S +IL+++ ++ N FG ++ +++ +
Sbjct: 6 QEKGVSEKEILEELKK-YRSLDLKYEDGNIFGSM--CSNVLPITRKIVDIFLETNLGDPG 62
Query: 127 ASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLG 186
LE + +G +L ++ G ++ G T E+ + L ++ EK
Sbjct: 63 LFKGTKLLEEKAVALLGSLLNNKDAY------GHIVSGGT-EANLMALRCIKNIWREKRR 115
Query: 187 GGFDNITKLAVYASDQTHFALQKSAKL 213
G + HF+ +K ++
Sbjct: 116 KGLSKNEHPKIIVPITAHFSFEKGREM 142
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 50.1 bits (119), Expect = 1e-07
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 2/105 (1%)
Query: 109 FLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCE 168
+++ S N + PV TEL++ ++ + + P + G G GS+ E
Sbjct: 71 ECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGT-VGSS-E 128
Query: 169 SLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213
+++ A + K K + K + +K A+
Sbjct: 129 AIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARY 173
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 40.8 bits (95), Expect = 1e-04
Identities = 24/209 (11%), Positives = 53/209 (25%), Gaps = 27/209 (12%)
Query: 13 HGTSFSADLEPKSFSDESKAVIDFIADYYKNIEKY---PVQSKVEPGYLSARLPDTAPHS 69
H S+ L P+ + I + + ++E + ++P+ +
Sbjct: 6 HHHHHSSGLVPRGSHMLDFNIEGLIPKNMEKRGELVLNEYLKEIEDVFNHRKIPE----N 61
Query: 70 PESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLA-- 127
+ I + + G +A + + L
Sbjct: 62 GIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDP 121
Query: 128 ---SPVATELESIVMDWMGKMLKLPSSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEK 184
+ A+ + ++ + K ST S+ L+AAR K
Sbjct: 122 QPKASGASIMYALTNKILESFFKQLGLN----VHAIATPISTGMSISLCLSAARKKYGSN 177
Query: 185 LGGGFDNITKLAVYASDQTHFALQKSAKL 213
V +H + K+
Sbjct: 178 -----------VVIYPYASHKSPIKAVSF 195
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 6e-04
Identities = 29/174 (16%), Positives = 44/174 (25%), Gaps = 94/174 (54%)
Query: 50 QSKVEPGYLSAR--------LPDTAP-HSPESLDDILKDVTDCILPGLTHWQSPNFFGYF 100
QS++ S R LP +P HS +L +D I
Sbjct: 404 QSRIP---FSERKLKFSNRFLPVASPFHSH-----LLVPASDLIN--------------- 440
Query: 101 QANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPSSFLFSGTGGG 160
+L + + K +++P ++ T G
Sbjct: 441 -------------------------------KDLVKNNVSFNAKDIQIP---VYD-TFDG 465
Query: 161 ----VLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVY-----ASDQTHF 205
VL GS E +V D I +L V TH
Sbjct: 466 SDLRVLSGSISERIV------------------DCIIRLPVKWETTTQFKATHI 501
Score = 33.5 bits (76), Expect = 0.049
Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 44/129 (34%)
Query: 27 SDESKAVIDFIADYY----------KNIEKYPVQSKVEPG----------YLS---ARLP 63
S ++ V + AD + + PV + G Y + +
Sbjct: 1639 SKAAQDVWNR-ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 64 DTAPHSPESLDDILKDVTDCILPG------LTHWQSPNFF-------------GYFQANA 104
D + + +I + T T + P G A+A
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 105 STAGF-LGE 112
+ AG LGE
Sbjct: 1758 TFAGHSLGE 1766
Score = 28.5 bits (63), Expect = 2.4
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 31/99 (31%)
Query: 100 FQAN--ASTAGFLGEM-------LCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLP- 149
F T GF + L F +G+ V++ +E + ++L L
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKF--LGY------VSSLVEPSKVGQFDQVLNLCL 88
Query: 150 ----SSFLFSGTGGGVLHGSTCESLVCTLAAARDKALEK 184
+ +L G +H +L L D L K
Sbjct: 89 TEFENCYL----EGNDIH-----ALAAKLLQENDTTLVK 118
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.006
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 10/27 (37%)
Query: 45 EKYPVQS--KVEPGYLSARL--PDTAP 67
EK Q+ K++ S +L D+AP
Sbjct: 18 EK---QALKKLQA---SLKLYADDSAP 38
Score = 29.5 bits (65), Expect = 0.52
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 180 KALEKLGGGFDNITKLAVYASDQTHFALQKSAKL 213
+AL+KL L +YA D AL A +
Sbjct: 20 QALKKLQA------SLKLYADDSAP-ALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.077
Identities = 28/195 (14%), Positives = 51/195 (26%), Gaps = 77/195 (39%)
Query: 35 DFIADY-YKNIEKYP--VQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHW 91
F+ ++ K+++ P + SK E +D I+
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEE------------------IDHIIMSKDAVS------- 62
Query: 92 QSPNFFGYF--QANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMD--------- 140
+ F + F+ E+L + + +L SP+ TE M
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVL-----RINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 141 --WMG-------------KMLKL--------PSSFLF-SGTGGGVLHGSTCESLVCTLAA 176
+ LKL P+ + G G G T + L
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKTW--VA--LDV 170
Query: 177 ARDKALEKL--GGGF 189
++ F
Sbjct: 171 CLSYKVQCKMDFKIF 185
>2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro
structure initiative; 1.90A {Pseudomonas aeruginosa}
Length = 144
Score = 30.4 bits (69), Expect = 0.19
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 181 ALEKLGGGFDNITKLAVYASDQTHFA 206
LE GG N+ KL VY +
Sbjct: 67 LLEAAGGHVGNLYKLNVYVTRIADKD 92
>3i7t_A RV2704, putative uncharacterized protein; siras,
YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva
unknown function; 1.93A {Mycobacterium tuberculosis}
Length = 149
Score = 29.6 bits (67), Expect = 0.45
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 179 DKALEKLGGGFDNITKLAVYASDQTHFA 206
+ AL + G ++ + +Y +D + +
Sbjct: 53 EIALGQAGATLADVVRTRIYVTDISRWR 80
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.66A {Klebsiella pneumoniae}
Length = 165
Score = 28.6 bits (64), Expect = 0.94
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
+ GG ++ KL Y + HF
Sbjct: 84 VASAGGQMSDVIKLVQYFRNLDHFP 108
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli
O6}
Length = 134
Score = 28.3 bits (64), Expect = 0.99
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
+E GG ++T +++ +D ++A
Sbjct: 69 IETAGGTMADVTFNSIFITDWKNYA 93
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor,
sugar binding protein; HET: BGC; 2.10A {Pseudomonas
syringae PV}
Length = 143
Score = 28.0 bits (63), Expect = 1.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
+ GG F +I KL ++ +D HFA
Sbjct: 79 AQAAGGSFKDIVKLNIFLTDLGHFA 103
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured
organism}
Length = 127
Score = 27.5 bits (62), Expect = 1.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
E GGG +I KL VY +D +F
Sbjct: 64 CEAAGGGLRDIVKLNVYLTDLANFP 88
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia
coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A*
2uyp_A
Length = 128
Score = 27.5 bits (62), Expect = 1.6
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
+E G +I K V+ D FA
Sbjct: 61 VEAAGLKVGDIVKTTVFVKDLNDFA 85
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region;
translation inhibitor, structural genomics, PSI; 1.70A
{Saccharomyces cerevisiae} SCOP: d.79.1.1
Length = 129
Score = 27.5 bits (62), Expect = 1.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
LE D + K+ ++ +D HFA
Sbjct: 64 LEASNSSLDRVVKVNIFLADINHFA 88
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025
putative translation initiation inhibitor; 2.15A
{Streptococcus pyogenes} SCOP: d.79.1.1
Length = 126
Score = 27.7 bits (62), Expect = 1.7
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
L +G D + ++ D +
Sbjct: 53 LALVGLTLDAVVQMDCLFRDVWNIP 77
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein;
translation initiation inhibitor regulator-like; 2.50A
{Streptococcus mutans}
Length = 125
Score = 27.5 bits (62), Expect = 1.7
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
L + G FD++ K + SD F
Sbjct: 61 LTEAGTDFDHVVKTTCFLSDIDDFV 85
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural
genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP:
d.79.1.1 PDB: 2csl_A 2cw4_A
Length = 124
Score = 27.5 bits (62), Expect = 1.9
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
LE G G + + + +D F
Sbjct: 60 LEAAGSGLSRVVQTTCFLADMEDFP 84
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious
diseases, center for STR genomics of infectious
diseases, csgid, translation; HET: GOL; 1.80A {Vibrio
vulnificus}
Length = 153
Score = 27.7 bits (62), Expect = 2.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
+E G +I K+ V+ D F
Sbjct: 85 VEASGLTVGDIVKMTVFVKDLNDFG 109
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A
{Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Length = 136
Score = 27.5 bits (62), Expect = 2.0
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
L+ G F N+ K V +D F
Sbjct: 65 LKAAGCDFTNVVKTTVLLADINDFG 89
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba
histolytica} PDB: 3m4s_A 3mqw_A*
Length = 148
Score = 27.6 bits (62), Expect = 2.0
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
LE+ G D + K +D F
Sbjct: 85 LEEAGSSMDKVVKTTCLLADIKDFG 109
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE
NPPSFA, national project on protein structural and
function analyses; 3.60A {Aeropyrum pernix} SCOP:
d.79.1.1
Length = 123
Score = 27.1 bits (61), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
+E G D+I K+ VY +D + F+
Sbjct: 56 VEGAGYSMDDIVKVTVYITDISRFS 80
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor,
trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus
horikoshii}
Length = 126
Score = 27.1 bits (61), Expect = 2.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
LE G +++ K+ VY D FA
Sbjct: 62 LEAAGYSLNDVIKVTVYLKDMNDFA 86
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria
maintenance, mitochondrial protein, protein binding;
1.75A {Saccharomyces cerevisiae}
Length = 153
Score = 27.6 bits (62), Expect = 2.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
L + DNI K+ V+ +D +FA
Sbjct: 88 LAESNSSLDNIVKVNVFLADMKNFA 112
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea,
structural genomics, UNK function; 2.00A {Sulfolobus
tokodaii} SCOP: d.79.1.1
Length = 128
Score = 27.1 bits (61), Expect = 2.3
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
++ G ++ V+ D F
Sbjct: 64 VKAAGFSLSDVAMAFVFLKDMNMFN 88
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease,
STRU genomics, joint center for structural genomics,
JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Length = 140
Score = 27.2 bits (61), Expect = 2.3
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
LE G ++ K+ V+ + +F
Sbjct: 74 LEAGGFSLKDVVKVTVFTTSMDYFQ 98
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein,
purine regulation, YJGF/YER057C family, gene regulation;
1.70A {Bacillus subtilis} SCOP: d.79.1.1
Length = 124
Score = 27.1 bits (61), Expect = 2.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
LE+ G F+ + K V+ +D FA
Sbjct: 60 LEEAGASFETVVKATVFIADMEQFA 84
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved
hypothetical protein, protein structure initiative, PSI;
2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Length = 156
Score = 27.3 bits (61), Expect = 2.4
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
LE G + + K V+ D FA
Sbjct: 93 LEAAGSSLNKVVKTTVFIKDMDSFA 117
>3lme_A Possible translation initiation inhibitor; structural genomics,
RPA2473, PSI-2, protein structure initiative; 2.74A
{Rhodopseudomonas palustris}
Length = 138
Score = 26.8 bits (60), Expect = 3.8
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 182 LEKLGGGFDNITKLAVYASDQTHFA 206
E G + +L V+ +D +
Sbjct: 63 AEAAGATKADAVRLTVFVTDVAKYR 87
>3rnr_A Stage II sporulation E family protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Length = 211
Score = 27.2 bits (61), Expect = 3.9
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 173 TLAAARDKALEKLGGGFDNITKLAV 197
+ + DN T V
Sbjct: 185 DARGILQEVEAQGRPYQDNATLALV 209
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase,
N-acetylglucosamine; 1.85A {Bacteroides
thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB:
2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A*
2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A*
2wzi_A* 2j4g_A*
Length = 716
Score = 27.1 bits (59), Expect = 4.6
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 23 PKSFSDESKAVIDFIADYYKNIEKY-PVQSKVEPGYLSARLPDTAPHSPESLDDILKDVT 81
P ++ SK I +A Y N KY Q+ + P + E L+ +
Sbjct: 373 PMEHAESSKIAIYSVASYAWNPAKYDTWQT------WKDAIRTILPSAAEELECFAMHNS 426
Query: 82 DCILPGLTHWQ 92
D G + +
Sbjct: 427 DLGPNGHGYRR 437
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification
enzyme, unknown function; 2.50A {Homo sapiens} PDB:
3al6_A*
Length = 338
Score = 26.5 bits (58), Expect = 6.7
Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 3/87 (3%)
Query: 14 GTSFSADLEPKSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESL 73
D K+F + + + K S+ E YL + D +
Sbjct: 86 AAVAQMDFISKNFVYRTLPFDQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIR 145
Query: 74 DDILKDVTDCILPGL---THWQSPNFF 97
D P + S F
Sbjct: 146 KQFPLLKGDIKFPEFFKEEQFFSSVFR 172
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 26.4 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 28 DESKAVIDFIADYYK--NIEKYPVQSKVEPGYLSARLPD 64
+E K V++ I D YK E Y + LS R P+
Sbjct: 397 EEFKRVVNMIIDVYKDFGFEDYSFR-------LSYRDPE 428
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,262,303
Number of extensions: 185512
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 53
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)